Query 031168
Match_columns 164
No_of_seqs 146 out of 1836
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:12:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dum_A Hypothetical protein PH 100.0 2.7E-30 9.2E-35 171.7 13.1 155 1-162 2-159 (170)
2 3tnj_A Universal stress protei 100.0 1.5E-30 5.2E-35 169.6 11.6 146 1-161 3-149 (150)
3 3s3t_A Nucleotide-binding prot 100.0 1.6E-30 5.5E-35 168.7 10.8 142 2-158 3-146 (146)
4 1mjh_A Protein (ATP-binding do 100.0 6.2E-30 2.1E-34 168.7 13.5 158 1-161 1-161 (162)
5 3fg9_A Protein of universal st 100.0 1.3E-29 4.6E-34 166.2 12.3 140 1-158 12-156 (156)
6 3hgm_A Universal stress protei 100.0 4.1E-29 1.4E-33 162.1 12.3 144 3-157 1-147 (147)
7 1tq8_A Hypothetical protein RV 100.0 6.4E-29 2.2E-33 164.2 13.3 144 2-162 15-161 (163)
8 3dlo_A Universal stress protei 100.0 4.9E-29 1.7E-33 163.5 10.5 131 2-158 22-155 (155)
9 3idf_A USP-like protein; unive 100.0 9.3E-29 3.2E-33 159.0 10.4 136 4-158 1-138 (138)
10 2z08_A Universal stress protei 100.0 1.7E-28 5.7E-33 157.7 10.9 136 3-158 1-137 (137)
11 2gm3_A Unknown protein; AT3G01 100.0 7.5E-28 2.6E-32 160.6 11.5 147 3-161 4-165 (175)
12 1jmv_A USPA, universal stress 99.9 7.2E-27 2.5E-31 150.6 13.9 139 3-161 1-140 (141)
13 3fdx_A Putative filament prote 99.9 1.2E-27 4E-32 154.6 10.0 138 4-158 1-143 (143)
14 3olq_A Universal stress protei 99.9 3.1E-27 1E-31 171.1 10.7 148 1-161 4-152 (319)
15 3loq_A Universal stress protei 99.9 8.5E-27 2.9E-31 167.2 7.8 144 1-161 19-164 (294)
16 3mt0_A Uncharacterized protein 99.9 9.4E-26 3.2E-30 161.5 13.2 125 1-160 4-129 (290)
17 3cis_A Uncharacterized protein 99.9 1.7E-24 5.7E-29 156.3 12.1 142 2-161 17-163 (309)
18 3mt0_A Uncharacterized protein 99.9 1.2E-24 4E-29 155.8 10.3 138 3-161 133-278 (290)
19 3loq_A Universal stress protei 99.9 6.2E-24 2.1E-28 152.3 13.8 127 2-163 168-294 (294)
20 1q77_A Hypothetical protein AQ 99.9 1.5E-24 5.3E-29 139.2 8.7 133 2-158 2-138 (138)
21 3ab8_A Putative uncharacterize 99.9 3.9E-24 1.3E-28 151.4 10.3 149 5-161 1-151 (268)
22 3olq_A Universal stress protei 99.9 6.9E-23 2.3E-27 148.3 12.7 143 3-161 155-307 (319)
23 3cis_A Uncharacterized protein 99.9 3E-22 1E-26 144.4 14.1 136 3-160 170-307 (309)
24 3ab8_A Putative uncharacterize 99.9 1.6E-21 5.3E-26 138.0 10.1 116 3-158 153-268 (268)
25 2iel_A Hypothetical protein TT 97.3 0.0062 2.1E-07 37.9 10.3 129 4-157 1-133 (138)
26 1wy5_A TILS, hypothetical UPF0 96.5 0.019 6.5E-07 41.2 8.8 94 4-130 24-135 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 96.3 0.023 7.9E-07 43.1 8.6 95 4-130 18-129 (464)
28 3g40_A Na-K-CL cotransporter; 95.6 0.012 4E-07 41.5 3.7 105 16-163 177-281 (294)
29 4b4k_A N5-carboxyaminoimidazol 95.6 0.14 4.7E-06 33.5 8.4 71 83-161 36-110 (181)
30 1zun_A Sulfate adenylyltransfe 95.5 0.071 2.4E-06 38.5 7.7 93 4-131 46-157 (325)
31 3oow_A Phosphoribosylaminoimid 95.3 0.19 6.7E-06 32.4 8.5 71 83-161 19-93 (166)
32 3ih5_A Electron transfer flavo 95.1 0.015 5.2E-07 39.5 3.1 86 3-129 2-100 (217)
33 2ywx_A Phosphoribosylaminoimid 95.0 0.19 6.5E-06 32.1 7.5 69 83-159 13-82 (157)
34 3trh_A Phosphoribosylaminoimid 95.0 0.17 5.8E-06 32.7 7.4 71 83-161 20-94 (169)
35 4grd_A N5-CAIR mutase, phospho 94.8 0.21 7.1E-06 32.4 7.4 70 83-160 26-99 (173)
36 3g40_A Na-K-CL cotransporter; 94.8 0.71 2.4E-05 32.6 12.3 121 6-161 22-148 (294)
37 3kuu_A Phosphoribosylaminoimid 94.7 0.16 5.4E-06 33.0 6.8 71 82-160 25-99 (174)
38 1xmp_A PURE, phosphoribosylami 94.6 0.26 8.7E-06 31.9 7.6 72 82-161 24-99 (170)
39 3ors_A N5-carboxyaminoimidazol 94.6 0.16 5.4E-06 32.7 6.6 70 83-160 17-90 (163)
40 1k92_A Argininosuccinate synth 94.6 0.81 2.8E-05 34.6 11.4 38 2-43 8-45 (455)
41 3lp6_A Phosphoribosylaminoimid 94.5 0.16 5.6E-06 33.0 6.5 70 83-160 21-94 (174)
42 1o4v_A Phosphoribosylaminoimid 94.5 0.18 6.2E-06 33.0 6.7 72 82-161 26-101 (183)
43 1o97_C Electron transferring f 94.4 0.79 2.7E-05 32.0 10.5 83 10-132 32-124 (264)
44 2nz2_A Argininosuccinate synth 94.4 0.45 1.5E-05 35.5 9.6 39 1-43 2-40 (413)
45 3kcq_A Phosphoribosylglycinami 94.3 0.46 1.6E-05 32.1 8.8 88 1-130 5-92 (215)
46 3k32_A Uncharacterized protein 94.3 0.4 1.4E-05 31.9 8.4 39 1-43 3-41 (203)
47 2xry_A Deoxyribodipyrimidine p 94.2 0.095 3.2E-06 39.9 5.8 112 16-159 50-161 (482)
48 1ni5_A Putative cell cycle pro 94.1 0.32 1.1E-05 36.5 8.4 92 4-130 13-118 (433)
49 1u11_A PURE (N5-carboxyaminoim 94.0 0.35 1.2E-05 31.7 7.3 72 82-161 34-109 (182)
50 1sur_A PAPS reductase; assimil 93.9 0.8 2.7E-05 30.7 9.5 87 5-130 45-157 (215)
51 3rg8_A Phosphoribosylaminoimid 93.9 0.36 1.2E-05 30.9 7.1 70 83-160 16-90 (159)
52 1efp_B ETF, protein (electron 93.3 0.13 4.5E-06 35.7 4.7 79 13-132 35-125 (252)
53 3rjz_A N-type ATP pyrophosphat 92.9 0.75 2.6E-05 31.6 7.9 97 1-130 1-100 (237)
54 1efv_B Electron transfer flavo 92.6 1.8 6.2E-05 30.0 10.9 77 15-132 40-128 (255)
55 3zqu_A Probable aromatic acid 92.5 0.24 8.1E-06 33.4 5.0 39 1-40 1-39 (209)
56 2oq2_A Phosphoadenosine phosph 92.3 1.1 3.9E-05 31.0 8.5 40 4-44 41-80 (261)
57 3bl5_A Queuosine biosynthesis 92.0 1.8 6.2E-05 28.7 11.2 37 3-43 2-38 (219)
58 1np7_A DNA photolyase; protein 91.9 0.82 2.8E-05 34.9 7.8 131 4-159 5-137 (489)
59 3umv_A Deoxyribodipyrimidine p 91.5 0.24 8.3E-06 38.0 4.6 86 15-126 50-135 (506)
60 3p9x_A Phosphoribosylglycinami 91.4 2.3 7.7E-05 28.6 9.6 84 4-129 2-90 (211)
61 2hma_A Probable tRNA (5-methyl 91.2 1.9 6.6E-05 31.7 9.0 95 4-129 9-132 (376)
62 4ds3_A Phosphoribosylglycinami 91.2 2.4 8.1E-05 28.5 8.8 40 90-129 51-95 (209)
63 2ywb_A GMP synthase [glutamine 90.1 4.2 0.00014 31.1 10.3 86 5-129 210-317 (503)
64 1iv0_A Hypothetical protein; r 89.8 0.96 3.3E-05 26.5 5.2 53 107-160 38-94 (98)
65 2wsi_A FAD synthetase; transfe 89.8 2.2 7.6E-05 30.4 8.1 93 5-132 54-169 (306)
66 3tqi_A GMP synthase [glutamine 89.7 0.98 3.3E-05 34.8 6.6 88 5-129 231-339 (527)
67 2wq7_A RE11660P; lyase-DNA com 89.7 1.1 3.9E-05 34.6 6.9 128 6-159 30-161 (543)
68 3da8_A Probable 5'-phosphoribo 89.3 3.7 0.00012 27.7 9.5 84 3-130 11-99 (215)
69 2c5s_A THII, probable thiamine 89.1 3.7 0.00013 30.5 9.2 35 4-42 187-221 (413)
70 1kor_A Argininosuccinate synth 89.1 3.2 0.00011 30.8 8.8 36 5-43 1-36 (400)
71 3lqk_A Dipicolinate synthase s 88.8 1 3.4E-05 30.1 5.4 36 3-39 6-42 (201)
72 3fy4_A 6-4 photolyase; DNA rep 88.4 1.1 3.9E-05 34.5 6.1 110 1-129 1-112 (537)
73 3dm5_A SRP54, signal recogniti 88.0 5.4 0.00019 30.0 9.4 51 84-134 143-196 (443)
74 2h31_A Multifunctional protein 88.0 1.6 5.5E-05 32.6 6.4 69 84-160 280-353 (425)
75 2dpl_A GMP synthetase, GMP syn 87.8 3.1 0.00011 29.6 7.8 36 5-43 21-56 (308)
76 2o8v_A Phosphoadenosine phosph 87.7 5 0.00017 27.6 8.6 35 5-43 46-80 (252)
77 2pg3_A Queuosine biosynthesis 87.5 4.9 0.00017 27.1 10.8 36 4-43 2-37 (232)
78 2der_A TRNA-specific 2-thiouri 87.4 4.8 0.00016 29.6 8.7 96 4-130 17-142 (380)
79 1g63_A Epidermin modifying enz 86.4 0.95 3.2E-05 29.7 4.1 37 3-40 1-37 (181)
80 2ywr_A Phosphoribosylglycinami 85.9 6.1 0.00021 26.5 9.1 41 89-129 44-89 (216)
81 1vl2_A Argininosuccinate synth 85.7 9.4 0.00032 28.6 9.6 35 4-42 14-48 (421)
82 1ccw_A Protein (glutamate muta 85.6 4.5 0.00015 25.0 6.8 72 83-157 18-91 (137)
83 3tqr_A Phosphoribosylglycinami 85.3 6.6 0.00023 26.4 9.6 83 4-129 5-92 (215)
84 1vbk_A Hypothetical protein PH 85.0 5.1 0.00017 28.5 7.6 33 4-41 179-211 (307)
85 2xxa_A Signal recognition part 84.2 9.4 0.00032 28.6 9.0 38 5-42 101-139 (433)
86 3tvs_A Cryptochrome-1; circadi 84.0 0.92 3.2E-05 35.1 3.6 119 13-158 14-135 (538)
87 2ejb_A Probable aromatic acid 83.6 2.1 7.3E-05 28.2 4.8 34 5-39 2-35 (189)
88 3dff_A Teicoplanin pseudoaglyc 83.2 9.5 0.00032 26.6 8.9 48 110-157 138-185 (273)
89 3qjg_A Epidermin biosynthesis 83.2 2.2 7.5E-05 27.8 4.7 35 4-39 5-39 (175)
90 3o1l_A Formyltetrahydrofolate 83.1 10 0.00036 26.9 9.7 84 3-130 104-191 (302)
91 4f3r_A Phosphopantetheine aden 82.6 7.4 0.00025 24.9 8.0 47 82-134 52-98 (162)
92 2l69_A Rossmann 2X3 fold prote 82.4 5.2 0.00018 23.0 6.1 38 82-119 87-124 (134)
93 3kl4_A SRP54, signal recogniti 82.1 11 0.00039 28.2 8.7 50 84-133 140-192 (433)
94 3q0i_A Methionyl-tRNA formyltr 81.6 6.1 0.00021 28.3 6.9 41 87-130 54-95 (318)
95 1p3y_1 MRSD protein; flavoprot 81.2 1.9 6.4E-05 28.6 3.9 36 3-39 7-42 (194)
96 2qv7_A Diacylglycerol kinase D 80.4 6.8 0.00023 28.1 6.9 73 82-160 41-115 (337)
97 3f6p_A Transcriptional regulat 80.4 6.5 0.00022 22.8 7.9 69 83-159 13-81 (120)
98 2gkg_A Response regulator homo 80.1 6.6 0.00023 22.7 6.0 69 82-157 15-86 (127)
99 1meo_A Phosophoribosylglycinam 80.0 11 0.00038 25.2 9.9 83 5-129 1-88 (209)
100 2i2x_B MTAC, methyltransferase 80.0 12 0.00042 25.7 7.8 72 84-158 139-211 (258)
101 3nbm_A PTS system, lactose-spe 79.6 2.2 7.7E-05 25.3 3.5 65 84-159 22-86 (108)
102 2yxb_A Coenzyme B12-dependent 79.6 6 0.00021 25.2 5.8 71 84-157 34-106 (161)
103 2e0i_A 432AA long hypothetical 79.5 2.8 9.5E-05 31.5 4.7 116 12-159 10-126 (440)
104 1vhx_A Putative holliday junct 79.2 1.3 4.5E-05 28.0 2.5 54 107-160 42-99 (150)
105 1nu0_A Hypothetical protein YQ 79.1 1.7 5.7E-05 27.2 2.9 53 107-159 40-96 (138)
106 3n0v_A Formyltetrahydrofolate 78.7 15 0.00051 25.9 9.7 83 4-130 90-176 (286)
107 2ffh_A Protein (FFH); SRP54, s 78.4 19 0.00064 27.0 9.7 44 90-133 147-193 (425)
108 1jq5_A Glycerol dehydrogenase; 78.3 6.7 0.00023 28.6 6.4 69 84-160 46-119 (370)
109 3lou_A Formyltetrahydrofolate 78.1 16 0.00053 25.9 9.5 84 3-130 94-181 (292)
110 1dnp_A DNA photolyase; DNA rep 78.0 1.6 5.6E-05 33.1 3.1 89 16-129 14-104 (471)
111 3fni_A Putative diflavin flavo 77.5 7.6 0.00026 24.5 5.8 49 82-132 19-68 (159)
112 2j07_A Deoxyribodipyrimidine p 77.5 9 0.00031 28.5 6.9 111 12-159 11-121 (420)
113 1y80_A Predicted cobalamin bin 77.3 5.6 0.00019 26.4 5.3 73 83-158 103-178 (210)
114 2l69_A Rossmann 2X3 fold prote 77.3 3.6 0.00012 23.7 3.7 49 82-130 12-60 (134)
115 1qv9_A F420-dependent methylen 77.2 2.9 9.9E-05 28.7 3.7 46 112-161 56-101 (283)
116 3ecs_A Translation initiation 77.2 17 0.0006 26.0 10.0 64 88-159 164-231 (315)
117 2q5c_A NTRC family transcripti 76.8 13 0.00046 24.4 7.3 64 82-160 14-79 (196)
118 3hly_A Flavodoxin-like domain; 76.4 8.7 0.0003 24.2 5.9 49 82-132 15-63 (161)
119 3s40_A Diacylglycerol kinase; 76.2 15 0.00052 25.8 7.6 73 82-161 25-99 (304)
120 3av3_A Phosphoribosylglycinami 75.9 15 0.00051 24.5 9.3 42 88-129 45-91 (212)
121 3hv2_A Response regulator/HD d 74.9 12 0.0004 22.8 7.3 71 82-160 24-95 (153)
122 3eod_A Protein HNR; response r 74.6 10 0.00036 22.1 7.1 71 82-160 17-88 (130)
123 2bon_A Lipid kinase; DAG kinas 74.1 16 0.00054 26.1 7.3 72 83-160 44-119 (332)
124 2nwr_A 2-dehydro-3-deoxyphosph 73.9 20 0.00068 25.0 8.9 66 82-159 61-126 (267)
125 3grc_A Sensor protein, kinase; 73.9 11 0.00039 22.3 7.0 71 82-160 16-89 (140)
126 3l4e_A Uncharacterized peptida 73.7 8.8 0.0003 25.5 5.5 46 82-129 43-88 (206)
127 3h5i_A Response regulator/sens 73.6 12 0.00041 22.3 9.5 74 82-161 15-88 (140)
128 3auf_A Glycinamide ribonucleot 73.5 18 0.00063 24.5 9.7 41 89-129 65-110 (229)
129 2j48_A Two-component sensor ki 72.8 11 0.00036 21.3 8.1 72 82-161 11-85 (119)
130 3en0_A Cyanophycinase; serine 72.5 4.8 0.00016 28.5 4.1 105 6-148 27-138 (291)
131 3m47_A Orotidine 5'-phosphate 72.4 14 0.00046 25.1 6.3 37 1-42 9-45 (228)
132 3nrb_A Formyltetrahydrofolate 72.2 10 0.00035 26.7 5.8 35 3-38 87-121 (287)
133 2l2q_A PTS system, cellobiose- 72.1 9.7 0.00033 22.4 4.9 66 83-159 19-84 (109)
134 3m9w_A D-xylose-binding peripl 72.1 22 0.00074 24.6 8.8 73 82-160 18-92 (313)
135 1qkk_A DCTD, C4-dicarboxylate 71.9 14 0.00048 22.4 6.2 70 82-159 13-83 (155)
136 3ezx_A MMCP 1, monomethylamine 71.9 9.9 0.00034 25.5 5.5 71 84-157 108-183 (215)
137 3cg4_A Response regulator rece 71.6 13 0.00045 22.0 8.3 71 82-160 17-90 (142)
138 3mcu_A Dipicolinate synthase, 71.5 5.2 0.00018 26.8 3.9 37 2-39 3-40 (207)
139 2q62_A ARSH; alpha/beta, flavo 71.3 22 0.00074 24.4 7.4 49 82-132 51-110 (247)
140 1owl_A Photolyase, deoxyribodi 70.9 14 0.00049 28.0 6.7 118 12-159 12-129 (484)
141 3to5_A CHEY homolog; alpha(5)b 70.9 15 0.00052 22.4 6.7 72 82-160 22-96 (134)
142 3obi_A Formyltetrahydrofolate 70.6 12 0.00041 26.4 5.8 35 3-38 88-122 (288)
143 1sbz_A Probable aromatic acid 70.5 8.5 0.00029 25.5 4.8 34 6-39 2-35 (197)
144 2zay_A Response regulator rece 70.4 15 0.0005 22.0 7.9 69 84-160 20-91 (147)
145 1y5e_A Molybdenum cofactor bio 69.8 19 0.00064 23.0 6.5 49 80-128 28-80 (169)
146 2zki_A 199AA long hypothetical 69.3 6.3 0.00022 25.6 4.0 43 1-43 1-43 (199)
147 3gt7_A Sensor protein; structu 68.7 17 0.00058 22.1 8.7 71 82-160 17-90 (154)
148 3i42_A Response regulator rece 68.6 15 0.0005 21.3 8.5 72 82-161 13-87 (127)
149 1qzu_A Hypothetical protein MD 68.3 7.4 0.00025 26.0 4.1 36 4-39 19-54 (206)
150 3rot_A ABC sugar transporter, 68.2 26 0.00089 24.0 7.3 73 82-160 19-95 (297)
151 2is8_A Molybdopterin biosynthe 68.2 20 0.00068 22.8 6.1 48 80-127 18-69 (164)
152 2lpm_A Two-component response 68.1 15 0.00052 22.1 5.3 67 85-159 21-87 (123)
153 2ohh_A Type A flavoprotein FPR 67.0 33 0.0011 24.8 8.7 49 82-132 271-319 (404)
154 1xhf_A DYE resistance, aerobic 66.9 16 0.00054 21.0 8.1 70 83-160 14-83 (123)
155 2pju_A Propionate catabolism o 66.8 27 0.00091 23.6 7.7 67 82-160 22-91 (225)
156 2b4a_A BH3024; flavodoxin-like 66.7 17 0.00059 21.4 6.6 69 82-158 25-95 (138)
157 3tqk_A Phospho-2-dehydro-3-deo 66.5 34 0.0012 24.8 8.8 128 5-159 49-185 (346)
158 3hs3_A Ribose operon repressor 66.2 28 0.00095 23.6 7.3 66 82-160 26-94 (277)
159 1jkx_A GART;, phosphoribosylgl 66.0 27 0.00091 23.3 10.4 41 89-129 43-88 (212)
160 1zgz_A Torcad operon transcrip 66.0 16 0.00056 20.9 8.4 70 83-160 13-82 (122)
161 2rjn_A Response regulator rece 65.9 19 0.00066 21.7 6.9 70 82-159 17-87 (154)
162 1ta9_A Glycerol dehydrogenase; 65.8 19 0.00065 27.1 6.4 68 84-160 106-178 (450)
163 2qr3_A Two-component system re 65.5 18 0.00062 21.3 6.3 71 82-159 13-88 (140)
164 3ff4_A Uncharacterized protein 65.4 8 0.00027 23.4 3.6 33 91-124 77-109 (122)
165 3o1i_D Periplasmic protein TOR 65.3 30 0.001 23.6 7.7 70 82-158 21-94 (304)
166 1zco_A 2-dehydro-3-deoxyphosph 65.3 31 0.0011 23.9 9.6 66 82-159 73-138 (262)
167 4dad_A Putative pilus assembly 65.3 19 0.00066 21.4 5.7 72 82-160 30-104 (146)
168 1gpm_A GMP synthetase, XMP ami 65.2 37 0.0013 26.1 8.0 36 5-43 228-263 (525)
169 3uug_A Multiple sugar-binding 65.1 32 0.0011 23.9 7.4 73 82-160 19-93 (330)
170 3cg0_A Response regulator rece 65.0 19 0.00064 21.2 7.0 73 82-160 19-91 (140)
171 2ppv_A Uncharacterized protein 64.9 13 0.00044 26.9 5.0 51 107-160 166-218 (332)
172 3l6u_A ABC-type sugar transpor 64.9 30 0.001 23.5 8.9 73 82-160 24-98 (293)
173 2a9o_A Response regulator; ess 64.8 17 0.00058 20.6 8.0 69 84-160 13-81 (120)
174 3kbq_A Protein TA0487; structu 64.6 24 0.00083 22.8 5.9 50 79-128 19-70 (172)
175 3p52_A NH(3)-dependent NAD(+) 64.5 31 0.0011 23.6 7.7 37 3-42 25-61 (249)
176 3l49_A ABC sugar (ribose) tran 64.2 26 0.0009 23.8 6.6 73 82-160 21-95 (291)
177 3cnb_A DNA-binding response re 64.1 20 0.00067 21.1 8.2 71 82-160 18-93 (143)
178 3iwt_A 178AA long hypothetical 64.0 26 0.00088 22.4 7.1 49 80-128 37-89 (178)
179 2j4d_A Cryptochrome 3, cryptoc 63.9 21 0.00073 27.4 6.4 131 5-159 40-174 (525)
180 3snk_A Response regulator CHEY 63.2 20 0.0007 21.0 6.2 71 82-160 24-96 (135)
181 1vr6_A Phospho-2-dehydro-3-deo 63.1 41 0.0014 24.5 9.5 66 82-159 156-221 (350)
182 2p0y_A Hypothetical protein LP 63.0 10 0.00035 27.5 4.2 50 108-160 178-229 (341)
183 2qzj_A Two-component response 63.0 21 0.00072 21.1 7.6 71 82-160 14-84 (136)
184 2yvk_A Methylthioribose-1-phos 62.8 43 0.0015 24.6 7.9 67 88-159 225-294 (374)
185 2amj_A Modulator of drug activ 62.6 25 0.00085 23.1 5.9 48 82-131 33-81 (204)
186 4f2d_A L-arabinose isomerase; 62.6 35 0.0012 26.2 7.3 45 108-158 59-104 (500)
187 2a5l_A Trp repressor binding p 62.1 9.1 0.00031 24.8 3.7 39 4-42 5-44 (200)
188 3inp_A D-ribulose-phosphate 3- 62.0 8.5 0.00029 26.5 3.6 45 84-129 181-225 (246)
189 1o97_D Electron transferring f 61.7 41 0.0014 24.1 7.8 36 6-42 2-43 (320)
190 3dbi_A Sugar-binding transcrip 61.3 39 0.0013 23.7 9.7 72 82-160 79-152 (338)
191 3t6k_A Response regulator rece 61.3 23 0.00078 20.9 7.9 71 82-160 14-87 (136)
192 3u7q_B Nitrogenase molybdenum- 61.1 49 0.0017 25.5 8.0 46 84-129 402-447 (523)
193 1qgu_B Protein (nitrogenase mo 61.1 54 0.0018 25.2 8.3 46 84-129 398-443 (519)
194 1srr_A SPO0F, sporulation resp 61.0 21 0.00072 20.5 7.1 71 82-160 13-84 (124)
195 1u3d_A Cryptochrome 1 apoprote 60.5 32 0.0011 26.3 6.9 117 12-159 21-138 (509)
196 3a11_A Translation initiation 60.4 45 0.0015 24.1 7.4 67 86-159 182-251 (338)
197 1t9k_A Probable methylthioribo 60.3 46 0.0016 24.2 9.1 67 88-159 200-269 (347)
198 3lua_A Response regulator rece 60.2 24 0.00082 20.8 6.0 72 82-160 14-90 (140)
199 3uow_A GMP synthetase; structu 60.2 58 0.002 25.3 8.3 37 4-43 255-291 (556)
200 3k9c_A Transcriptional regulat 60.2 38 0.0013 23.1 9.5 69 82-159 27-96 (289)
201 2bw0_A 10-FTHFDH, 10-formyltet 60.1 34 0.0012 24.5 6.6 41 89-129 65-108 (329)
202 3qi7_A Putative transcriptiona 59.8 49 0.0017 24.3 7.5 93 6-129 14-120 (371)
203 2qxy_A Response regulator; reg 59.7 24 0.00084 20.8 7.5 70 82-160 14-84 (142)
204 3gl9_A Response regulator; bet 59.6 23 0.00079 20.4 8.5 70 83-160 13-85 (122)
205 3rqi_A Response regulator prot 59.6 30 0.001 21.8 6.2 71 82-160 17-88 (184)
206 2o2z_A Hypothetical protein; s 59.5 16 0.00053 26.3 4.7 50 108-160 168-219 (323)
207 3dfi_A Pseudoaglycone deacetyl 59.1 41 0.0014 23.2 9.7 49 109-157 134-182 (270)
208 3g1w_A Sugar ABC transporter; 59.0 40 0.0014 23.0 7.5 73 82-160 20-95 (305)
209 3egc_A Putative ribose operon 58.7 40 0.0014 22.9 9.5 71 82-160 24-96 (291)
210 3m5v_A DHDPS, dihydrodipicolin 58.7 45 0.0015 23.5 7.1 75 84-158 65-141 (301)
211 2gwr_A DNA-binding response re 58.5 37 0.0012 22.4 7.8 69 83-159 16-84 (238)
212 2qjg_A Putative aldolase MJ040 58.5 36 0.0012 23.3 6.4 68 84-159 133-210 (273)
213 3q9s_A DNA-binding response re 58.4 39 0.0013 22.7 7.5 71 82-160 47-117 (249)
214 2q7x_A UPF0052 protein SP_1565 58.4 12 0.0004 27.0 3.9 48 109-159 175-224 (326)
215 3ce9_A Glycerol dehydrogenase; 58.4 22 0.00074 25.7 5.4 67 84-159 49-120 (354)
216 1mb3_A Cell division response 58.4 24 0.00081 20.2 7.0 71 82-160 11-84 (124)
217 3w01_A Heptaprenylglyceryl pho 58.3 26 0.00087 24.0 5.4 49 110-161 26-74 (235)
218 1n8f_A DAHP synthetase; (beta/ 58.3 51 0.0017 24.0 11.4 129 6-160 53-189 (350)
219 2g2c_A Putative molybdenum cof 58.3 29 0.001 22.0 5.5 47 82-128 24-77 (167)
220 3kke_A LACI family transcripti 58.3 42 0.0014 23.0 9.4 70 82-160 31-103 (303)
221 1e5d_A Rubredoxin\:oxygen oxid 57.2 52 0.0018 23.8 10.2 49 82-132 267-315 (402)
222 1w2w_B 5-methylthioribose-1-ph 57.0 13 0.00046 24.4 3.7 66 89-159 23-93 (191)
223 2kyr_A Fructose-like phosphotr 56.9 11 0.00039 22.4 3.1 46 84-130 24-70 (111)
224 3jy6_A Transcriptional regulat 56.9 42 0.0014 22.6 9.8 70 82-160 23-94 (276)
225 3exr_A RMPD (hexulose-6-phosph 56.4 14 0.00047 24.9 3.8 32 5-41 6-37 (221)
226 2oqr_A Sensory transduction pr 56.3 39 0.0013 22.0 7.8 70 83-160 15-84 (230)
227 1mvl_A PPC decarboxylase athal 56.3 18 0.00061 24.2 4.3 34 4-39 19-52 (209)
228 2r48_A Phosphotransferase syst 56.3 11 0.00036 22.4 2.8 45 84-130 21-67 (106)
229 1uan_A Hypothetical protein TT 55.7 44 0.0015 22.4 10.4 46 84-129 51-104 (227)
230 2hy5_B Intracellular sulfur ox 55.6 33 0.0011 21.0 5.3 39 3-42 4-46 (136)
231 2vzf_A NADH-dependent FMN redu 55.5 39 0.0013 21.8 6.0 49 82-132 19-81 (197)
232 3ksm_A ABC-type sugar transpor 55.2 44 0.0015 22.3 6.8 73 82-160 16-93 (276)
233 3hdv_A Response regulator; PSI 55.1 29 0.001 20.2 8.1 72 82-160 17-90 (136)
234 3pzy_A MOG; ssgcid, seattle st 54.9 24 0.00081 22.5 4.6 47 81-128 25-74 (164)
235 1s8n_A Putative antiterminator 54.6 39 0.0013 21.6 8.0 71 82-159 23-93 (205)
236 3vzx_A Heptaprenylglyceryl pho 54.4 19 0.00064 24.5 4.2 48 111-161 22-69 (228)
237 3e61_A Putative transcriptiona 54.3 46 0.0016 22.3 6.6 69 82-160 24-95 (277)
238 2f6u_A GGGPS, (S)-3-O-geranylg 54.2 19 0.00066 24.5 4.3 49 109-160 22-70 (234)
239 1t5o_A EIF2BD, translation ini 54.1 60 0.0021 23.6 7.9 66 89-159 199-266 (351)
240 2jba_A Phosphate regulon trans 54.0 29 0.00099 19.9 6.0 69 83-159 13-84 (127)
241 2m1z_A LMO0427 protein; homolo 53.7 8.5 0.00029 22.8 2.1 44 85-130 22-67 (106)
242 3nhm_A Response regulator; pro 53.5 31 0.001 20.0 7.1 68 84-160 16-86 (133)
243 2ixd_A LMBE-related protein; h 53.3 50 0.0017 22.4 11.4 47 84-130 53-107 (242)
244 3gv0_A Transcriptional regulat 53.3 50 0.0017 22.4 8.2 71 82-160 26-98 (288)
245 3fvw_A Putative NAD(P)H-depend 53.2 43 0.0015 21.6 8.4 38 4-42 2-42 (192)
246 2rdm_A Response regulator rece 53.2 31 0.001 19.9 7.9 72 82-160 15-88 (132)
247 2goy_A Adenosine phosphosulfat 53.1 29 0.00098 24.1 5.2 35 5-44 55-89 (275)
248 1xng_A NH(3)-dependent NAD(+) 53.1 50 0.0017 22.7 6.4 37 3-42 24-60 (268)
249 3kto_A Response regulator rece 53.1 29 0.00098 20.4 4.7 72 82-160 16-89 (136)
250 3cfy_A Putative LUXO repressor 53.0 33 0.0011 20.2 6.2 69 84-160 16-85 (137)
251 1mkz_A Molybdenum cofactor bio 52.9 42 0.0014 21.4 6.3 46 82-127 27-76 (172)
252 3n53_A Response regulator rece 52.7 33 0.0011 20.2 7.3 69 83-160 14-85 (140)
253 1f6k_A N-acetylneuraminate lya 52.7 57 0.0019 22.8 9.2 52 107-158 84-137 (293)
254 1q74_A 1D-MYO-inosityl 2-aceta 52.4 59 0.002 22.9 8.4 19 108-126 117-135 (303)
255 3rfq_A Pterin-4-alpha-carbinol 52.3 46 0.0016 21.7 6.6 48 81-128 47-97 (185)
256 3kht_A Response regulator; PSI 52.1 35 0.0012 20.2 7.9 73 82-160 15-90 (144)
257 3nvt_A 3-deoxy-D-arabino-heptu 51.9 69 0.0024 23.6 8.4 66 82-159 192-257 (385)
258 3cvo_A Methyltransferase-like 51.6 35 0.0012 22.6 5.2 49 82-130 61-132 (202)
259 3pm6_A Putative fructose-bisph 51.5 17 0.00058 25.9 3.7 68 91-158 21-89 (306)
260 2r4q_A Phosphotransferase syst 51.2 10 0.00036 22.4 2.3 45 84-130 21-67 (106)
261 2a0u_A Initiation factor 2B; S 51.1 72 0.0024 23.5 9.6 67 88-159 229-298 (383)
262 3qk7_A Transcriptional regulat 50.8 56 0.0019 22.3 9.5 71 82-160 26-97 (294)
263 8abp_A L-arabinose-binding pro 50.3 57 0.002 22.2 6.9 71 82-159 18-90 (306)
264 2q9u_A A-type flavoprotein; fl 49.8 72 0.0025 23.2 10.1 74 82-157 271-347 (414)
265 1efv_A Electron transfer flavo 49.8 68 0.0023 22.9 9.0 79 7-129 4-95 (315)
266 3rpe_A MDAB, modulator of drug 49.6 55 0.0019 21.9 5.9 48 82-131 46-94 (218)
267 1zh2_A KDP operon transcriptio 49.6 34 0.0011 19.3 7.4 70 83-160 12-81 (121)
268 1gvf_A Tagatose-bisphosphate a 49.1 21 0.00072 25.2 3.9 70 90-159 11-82 (286)
269 3cu2_A Ribulose-5-phosphate 3- 48.8 29 0.00099 23.6 4.5 45 84-129 173-219 (237)
270 1x92_A APC5045, phosphoheptose 48.1 27 0.00091 22.6 4.2 38 3-41 112-149 (199)
271 3q94_A Fructose-bisphosphate a 48.0 23 0.00079 25.0 4.0 71 89-159 13-88 (288)
272 3nv7_A Phosphopantetheine aden 47.8 50 0.0017 20.8 7.2 47 82-133 49-95 (157)
273 3nbk_A Phosphopantetheine aden 47.8 54 0.0019 21.2 8.5 49 82-135 68-116 (177)
274 1vb5_A Translation initiation 47.6 68 0.0023 22.3 9.1 63 89-159 153-219 (276)
275 3k4h_A Putative transcriptiona 47.5 62 0.0021 21.8 7.8 71 82-160 29-101 (292)
276 1dbw_A Transcriptional regulat 47.4 39 0.0013 19.4 7.2 69 84-160 15-84 (126)
277 3jte_A Response regulator rece 47.4 41 0.0014 19.7 7.5 72 82-160 13-86 (143)
278 2pbq_A Molybdenum cofactor bio 47.2 54 0.0019 21.0 6.3 47 81-128 23-76 (178)
279 3hzh_A Chemotaxis response reg 47.2 45 0.0016 20.1 7.8 72 82-160 46-120 (157)
280 3h1g_A Chemotaxis protein CHEY 46.9 40 0.0014 19.5 7.1 73 82-160 15-90 (129)
281 3gxq_A Putative regulator of t 46.9 22 0.00076 17.1 2.6 26 98-123 11-37 (54)
282 1uf3_A Hypothetical protein TT 46.7 35 0.0012 22.1 4.7 17 111-127 23-39 (228)
283 1xrs_A D-lysine 5,6-aminomutas 46.4 38 0.0013 25.6 4.9 45 96-140 150-197 (516)
284 3qay_A Endolysin; amidase A/B 46.2 55 0.0019 21.1 5.4 47 82-128 32-85 (180)
285 3brs_A Periplasmic binding pro 46.1 66 0.0022 21.7 6.6 72 82-159 23-98 (289)
286 3uhj_A Probable glycerol dehyd 46.0 23 0.00078 26.1 3.9 69 84-160 67-139 (387)
287 1vp8_A Hypothetical protein AF 45.7 63 0.0022 21.4 6.4 76 81-158 28-105 (201)
288 3t8y_A CHEB, chemotaxis respon 45.7 50 0.0017 20.2 7.8 72 82-159 35-106 (164)
289 2rgy_A Transcriptional regulat 45.7 68 0.0023 21.7 7.6 70 82-159 24-98 (290)
290 1jlj_A Gephyrin; globular alph 45.5 61 0.0021 21.1 6.5 47 82-128 33-86 (189)
291 3a10_A Response regulator; pho 45.5 39 0.0013 18.9 7.1 69 83-159 12-81 (116)
292 3tfw_A Putative O-methyltransf 45.4 51 0.0017 22.1 5.4 48 82-129 98-145 (248)
293 3bul_A Methionine synthase; tr 45.4 39 0.0013 26.4 5.2 72 84-158 114-186 (579)
294 3d0c_A Dihydrodipicolinate syn 45.3 79 0.0027 22.4 7.1 73 84-158 70-144 (314)
295 1ycg_A Nitric oxide reductase; 45.3 83 0.0028 22.6 10.2 49 82-132 266-314 (398)
296 3hdg_A Uncharacterized protein 45.3 44 0.0015 19.4 7.6 71 82-160 17-88 (137)
297 3miz_A Putative transcriptiona 45.3 70 0.0024 21.8 7.6 67 83-158 31-99 (301)
298 3hcw_A Maltose operon transcri 45.3 70 0.0024 21.8 7.8 71 82-160 28-100 (295)
299 1jx7_A Hypothetical protein YC 45.0 43 0.0015 19.3 4.7 39 5-43 2-45 (117)
300 3ctl_A D-allulose-6-phosphate 44.8 35 0.0012 23.1 4.4 46 83-129 152-198 (231)
301 3c3m_A Response regulator rece 44.8 46 0.0016 19.5 7.8 70 83-160 14-86 (138)
302 2ef0_A Ornithine carbamoyltran 44.6 82 0.0028 22.4 8.8 108 2-156 7-127 (301)
303 1sqs_A Conserved hypothetical 44.6 68 0.0023 21.4 6.2 49 82-132 18-91 (242)
304 2uyg_A 3-dehydroquinate dehydr 44.5 57 0.002 20.5 5.7 72 79-158 24-99 (149)
305 3eul_A Possible nitrate/nitrit 44.4 49 0.0017 19.7 6.5 73 82-160 25-98 (152)
306 2wte_A CSA3; antiviral protein 43.9 74 0.0025 21.7 8.9 87 3-125 7-98 (244)
307 2pjk_A 178AA long hypothetical 43.7 63 0.0022 20.8 6.8 50 79-128 36-89 (178)
308 3vk5_A MOEO5; TIM barrel, tran 43.5 31 0.0011 24.3 4.0 46 112-158 58-104 (286)
309 3tqq_A Methionyl-tRNA formyltr 43.3 87 0.003 22.3 7.8 42 86-130 48-90 (314)
310 2pln_A HP1043, response regula 43.2 48 0.0016 19.3 7.0 67 82-160 28-95 (137)
311 1of8_A Phospho-2-dehydro-3-deo 43.2 96 0.0033 22.8 9.3 127 5-160 67-204 (370)
312 1dc7_A NTRC, nitrogen regulati 43.1 26 0.0009 19.9 3.3 69 83-159 14-83 (124)
313 2fz5_A Flavodoxin; alpha/beta 43.0 50 0.0017 19.5 6.8 44 82-131 14-57 (137)
314 1jbe_A Chemotaxis protein CHEY 42.9 46 0.0016 19.0 7.0 70 83-160 15-88 (128)
315 2ojp_A DHDPS, dihydrodipicolin 42.8 84 0.0029 22.0 6.5 74 84-158 59-134 (292)
316 1tjy_A Sugar transport protein 42.7 82 0.0028 21.8 6.8 72 82-159 19-93 (316)
317 3elf_A Fructose-bisphosphate a 42.5 32 0.0011 25.0 4.1 76 86-161 10-97 (349)
318 3lte_A Response regulator; str 42.4 48 0.0016 19.1 8.6 44 82-129 16-59 (132)
319 2r8w_A AGR_C_1641P; APC7498, d 42.3 92 0.0032 22.3 6.8 74 84-158 92-167 (332)
320 2fn9_A Ribose ABC transporter, 42.3 77 0.0026 21.4 8.6 72 82-159 18-91 (290)
321 1tmy_A CHEY protein, TMY; chem 42.2 46 0.0016 18.8 7.9 71 83-160 13-84 (120)
322 1o5k_A DHDPS, dihydrodipicolin 42.2 88 0.003 22.0 6.5 74 84-158 70-145 (306)
323 3k9w_A Phosphopantetheine aden 42.2 70 0.0024 20.8 8.6 47 82-134 69-116 (187)
324 3cz5_A Two-component response 42.1 54 0.0018 19.6 7.1 72 82-160 15-88 (153)
325 1ydg_A Trp repressor binding p 42.1 47 0.0016 21.6 4.7 41 3-43 5-46 (211)
326 2q8u_A Exonuclease, putative; 42.0 20 0.0007 25.4 3.1 11 34-44 18-28 (336)
327 2yva_A DNAA initiator-associat 42.0 38 0.0013 21.7 4.2 38 3-41 108-145 (196)
328 2vk2_A YTFQ, ABC transporter p 41.9 81 0.0028 21.6 8.0 72 82-159 18-91 (306)
329 3o74_A Fructose transport syst 41.9 74 0.0025 21.1 9.5 72 82-160 18-91 (272)
330 2j37_W Signal recognition part 41.8 1.2E+02 0.004 23.3 10.3 24 17-41 115-138 (504)
331 1mvo_A PHOP response regulator 41.7 50 0.0017 19.1 8.8 70 83-160 14-84 (136)
332 2d1p_B TUSC, hypothetical UPF0 41.7 22 0.00074 21.2 2.7 38 4-42 1-42 (119)
333 2v9d_A YAGE; dihydrodipicolini 41.5 96 0.0033 22.3 6.5 74 84-158 89-164 (343)
334 2ehh_A DHDPS, dihydrodipicolin 41.5 88 0.003 21.9 7.2 52 107-158 80-133 (294)
335 3jr2_A Hexulose-6-phosphate sy 41.4 13 0.00043 24.8 1.8 23 4-27 6-28 (218)
336 2ark_A Flavodoxin; FMN, struct 41.4 64 0.0022 20.5 5.2 44 82-131 19-63 (188)
337 3cu5_A Two component transcrip 41.3 54 0.0018 19.3 4.8 20 110-129 39-58 (141)
338 3rfo_A Methionyl-tRNA formyltr 41.2 95 0.0032 22.1 6.7 42 86-130 50-92 (317)
339 1mio_B Nitrogenase molybdenum 41.0 1.1E+02 0.0038 22.9 9.9 45 84-129 350-394 (458)
340 2vc6_A MOSA, dihydrodipicolina 40.8 85 0.0029 21.9 6.1 74 84-158 58-133 (292)
341 3a5f_A Dihydrodipicolinate syn 40.8 85 0.0029 21.9 6.0 74 84-158 59-134 (291)
342 2yxg_A DHDPS, dihydrodipicolin 40.7 90 0.0031 21.7 6.9 52 107-158 80-133 (289)
343 2fzv_A Putative arsenical resi 40.7 51 0.0017 23.1 4.8 49 82-132 75-135 (279)
344 4e7p_A Response regulator; DNA 40.7 57 0.0019 19.4 7.2 73 82-160 30-103 (150)
345 1uuy_A CNX1, molybdopterin bio 40.6 67 0.0023 20.3 6.4 33 96-128 43-79 (167)
346 3h5l_A Putative branched-chain 40.4 1E+02 0.0035 22.2 6.8 80 12-127 139-226 (419)
347 1wpw_A 3-isopropylmalate dehyd 40.3 99 0.0034 22.3 6.3 28 15-42 144-171 (336)
348 1vma_A Cell division protein F 40.1 96 0.0033 21.9 8.2 47 86-132 149-198 (306)
349 1h05_A 3-dehydroquinate dehydr 40.1 68 0.0023 20.1 5.9 75 76-158 24-101 (146)
350 3grf_A Ornithine carbamoyltran 40.1 1E+02 0.0035 22.2 8.3 34 112-155 93-126 (328)
351 1xky_A Dihydrodipicolinate syn 40.0 95 0.0033 21.8 9.2 74 84-158 70-145 (301)
352 2dri_A D-ribose-binding protei 39.9 82 0.0028 21.1 7.7 72 82-159 17-90 (271)
353 3tfx_A Orotidine 5'-phosphate 39.8 67 0.0023 22.2 5.3 26 1-27 1-26 (259)
354 4dim_A Phosphoribosylglycinami 39.8 64 0.0022 23.4 5.5 34 1-39 4-37 (403)
355 3jvd_A Transcriptional regulat 39.7 91 0.0031 21.8 6.2 64 82-159 80-144 (333)
356 2pl1_A Transcriptional regulat 39.7 51 0.0017 18.5 8.5 70 83-160 11-81 (121)
357 2xw6_A MGS, methylglyoxal synt 39.5 57 0.002 20.1 4.4 34 95-129 48-83 (134)
358 3gbv_A Putative LACI-family tr 39.4 87 0.003 21.2 7.1 73 82-160 25-103 (304)
359 3cpr_A Dihydrodipicolinate syn 39.4 98 0.0034 21.8 7.1 74 84-158 74-149 (304)
360 3flu_A DHDPS, dihydrodipicolin 39.3 97 0.0033 21.7 8.7 73 84-158 65-140 (297)
361 2wkj_A N-acetylneuraminate lya 39.3 90 0.0031 22.0 6.0 52 107-158 91-145 (303)
362 3n0r_A Response regulator; sig 39.0 94 0.0032 21.5 8.7 73 82-160 170-242 (286)
363 3u7r_A NADPH-dependent FMN red 38.7 53 0.0018 21.4 4.4 38 4-42 2-42 (190)
364 3kyj_B CHEY6 protein, putative 38.6 60 0.0021 19.1 6.5 71 82-159 23-95 (145)
365 2ioy_A Periplasmic sugar-bindi 38.6 89 0.003 21.0 8.3 72 82-159 17-90 (283)
366 1dbq_A Purine repressor; trans 38.4 89 0.003 21.0 9.2 71 82-159 23-95 (289)
367 3n8k_A 3-dehydroquinate dehydr 38.0 80 0.0027 20.4 6.3 79 72-158 46-127 (172)
368 1gqo_A Dehydroquinase; dehydra 38.0 73 0.0025 19.9 6.2 79 72-158 18-99 (143)
369 2qsj_A DNA-binding response re 37.9 64 0.0022 19.2 6.2 72 82-160 13-87 (154)
370 2avd_A Catechol-O-methyltransf 37.8 83 0.0028 20.4 6.4 48 82-129 104-154 (229)
371 2yvq_A Carbamoyl-phosphate syn 37.7 46 0.0016 20.5 3.8 64 90-155 61-129 (143)
372 3ayv_A Putative uncharacterize 37.7 29 0.001 23.2 3.2 79 18-119 75-153 (254)
373 3mm4_A Histidine kinase homolo 37.6 81 0.0028 20.3 7.7 72 82-160 71-160 (206)
374 3duw_A OMT, O-methyltransferas 37.5 83 0.0028 20.4 6.8 48 82-129 93-142 (223)
375 1m3s_A Hypothetical protein YC 37.4 54 0.0018 20.8 4.3 39 3-42 78-116 (186)
376 3r7f_A Aspartate carbamoyltran 37.4 1.1E+02 0.0037 21.7 9.9 63 84-155 50-118 (304)
377 3qw3_A Orotidine-5-phosphate d 37.4 42 0.0015 23.1 3.9 34 5-38 14-48 (255)
378 3m6m_D Sensory/regulatory prot 37.3 64 0.0022 19.1 7.7 71 82-160 24-99 (143)
379 1yio_A Response regulatory pro 37.2 79 0.0027 20.1 8.1 71 82-160 14-85 (208)
380 3lfh_A Manxa, phosphotransfera 36.8 75 0.0025 19.7 5.3 39 4-44 3-41 (144)
381 3l21_A DHDPS, dihydrodipicolin 36.8 1.1E+02 0.0037 21.6 6.3 74 84-158 73-148 (304)
382 1di6_A MOGA, molybdenum cofact 36.8 88 0.003 20.5 5.3 47 82-128 22-74 (195)
383 1vs1_A 3-deoxy-7-phosphoheptul 36.6 1.1E+02 0.0037 21.4 7.5 66 82-159 88-153 (276)
384 2qvg_A Two component response 36.4 64 0.0022 18.8 8.0 73 82-160 17-98 (143)
385 4e0q_A COP9 signalosome comple 36.3 63 0.0021 20.0 4.3 49 109-157 72-120 (141)
386 1k68_A Phytochrome response re 36.3 63 0.0021 18.6 7.9 73 82-160 12-94 (140)
387 3heb_A Response regulator rece 36.2 68 0.0023 19.0 7.2 74 82-160 14-98 (152)
388 2rfg_A Dihydrodipicolinate syn 36.0 88 0.003 21.9 5.5 74 84-158 58-133 (297)
389 3tdn_A FLR symmetric alpha-bet 35.9 98 0.0033 20.7 5.6 12 145-156 73-84 (247)
390 1b93_A Protein (methylglyoxal 35.5 83 0.0029 19.8 5.2 34 95-129 56-91 (152)
391 2fvy_A D-galactose-binding per 35.2 1E+02 0.0036 20.9 7.7 72 82-159 18-92 (309)
392 1viz_A PCRB protein homolog; s 34.9 47 0.0016 22.7 3.8 48 110-160 23-70 (240)
393 2px0_A Flagellar biosynthesis 34.7 1.2E+02 0.004 21.2 8.2 33 8-40 110-142 (296)
394 3c3d_A 2-phospho-L-lactate tra 34.7 50 0.0017 23.6 4.0 58 97-159 158-221 (311)
395 3ih5_A Electron transfer flavo 34.6 1E+02 0.0035 20.5 5.7 77 82-159 22-99 (217)
396 3dr5_A Putative O-methyltransf 34.6 81 0.0028 20.8 5.0 47 82-129 91-138 (221)
397 3tpf_A Otcase, ornithine carba 34.5 1.2E+02 0.0042 21.5 7.4 63 84-156 50-118 (307)
398 3ctl_A D-allulose-6-phosphate 34.5 1.1E+02 0.0036 20.7 5.5 57 85-143 95-151 (231)
399 1rtt_A Conserved hypothetical 34.4 46 0.0016 21.3 3.6 39 3-42 5-46 (193)
400 3b2n_A Uncharacterized protein 34.3 69 0.0024 18.5 6.6 72 83-160 14-86 (133)
401 1q6o_A Humps, 3-keto-L-gulonat 34.1 58 0.002 21.4 4.2 24 4-28 3-26 (216)
402 3klo_A Transcriptional regulat 34.1 96 0.0033 20.1 5.8 71 84-160 19-92 (225)
403 3huu_A Transcription regulator 34.0 1.1E+02 0.0038 20.8 7.4 71 82-160 43-115 (305)
404 1h5y_A HISF; histidine biosynt 34.0 80 0.0027 20.9 5.0 49 110-158 157-205 (253)
405 2rjo_A Twin-arginine transloca 33.7 70 0.0024 22.2 4.8 72 82-159 21-96 (332)
406 2qu7_A Putative transcriptiona 33.6 1.1E+02 0.0037 20.6 7.6 68 82-159 23-92 (288)
407 3r0j_A Possible two component 33.6 1E+02 0.0036 20.3 8.5 71 82-160 33-104 (250)
408 1zq6_A Otcase, ornithine carba 33.5 1.4E+02 0.0048 21.8 7.4 27 3-29 22-49 (359)
409 1vlj_A NADH-dependent butanol 33.4 96 0.0033 22.8 5.5 43 84-128 60-110 (407)
410 3qze_A DHDPS, dihydrodipicolin 33.3 1.2E+02 0.0041 21.5 5.9 74 84-158 81-156 (314)
411 1tk9_A Phosphoheptose isomeras 33.2 72 0.0025 20.1 4.4 41 3-44 109-149 (188)
412 3cbg_A O-methyltransferase; cy 33.1 1E+02 0.0036 20.2 6.1 48 82-129 107-157 (232)
413 3tb6_A Arabinose metabolism tr 32.9 1.1E+02 0.0038 20.5 9.6 76 82-160 31-108 (298)
414 3f3m_A Phosphopantetheine aden 32.9 96 0.0033 19.7 9.1 48 82-134 50-97 (168)
415 2xdq_A Light-independent proto 32.9 21 0.00073 26.8 2.0 51 82-132 83-140 (460)
416 3inp_A D-ribulose-phosphate 3- 32.8 97 0.0033 21.2 5.1 59 85-145 123-181 (246)
417 1a2o_A CHEB methylesterase; ba 32.8 1.4E+02 0.0047 21.5 7.9 71 83-160 14-85 (349)
418 3sz8_A 2-dehydro-3-deoxyphosph 32.7 1E+02 0.0036 21.7 5.3 66 82-159 77-142 (285)
419 1e2b_A Enzyme IIB-cellobiose; 32.7 75 0.0026 18.4 4.2 39 4-42 3-41 (106)
420 4fe7_A Xylose operon regulator 32.6 1.4E+02 0.0048 21.6 6.7 66 82-159 40-105 (412)
421 1p6q_A CHEY2; chemotaxis, sign 32.5 72 0.0024 18.2 7.3 72 82-160 16-90 (129)
422 3tr6_A O-methyltransferase; ce 32.5 1E+02 0.0035 19.9 6.3 48 82-129 99-149 (225)
423 3o3m_A Alpha subunit 2-hydroxy 32.4 35 0.0012 25.3 3.0 55 107-161 321-375 (408)
424 2fyw_A Conserved hypothetical 32.4 35 0.0012 23.6 2.9 26 103-128 42-67 (267)
425 1wdn_A GLNBP, glutamine bindin 32.1 96 0.0033 19.5 5.1 42 84-128 28-69 (226)
426 3zxs_A Cryptochrome B, rscryb; 31.9 79 0.0027 24.4 4.9 70 82-160 66-140 (522)
427 1gtz_A 3-dehydroquinate dehydr 31.9 1E+02 0.0034 19.6 4.9 79 72-158 24-106 (156)
428 1w3i_A EDA, 2-keto-3-deoxy glu 31.8 65 0.0022 22.5 4.3 51 107-158 76-130 (293)
429 1qpz_A PURA, protein (purine n 31.6 1.3E+02 0.0045 20.9 8.8 70 82-158 74-145 (340)
430 2iks_A DNA-binding transcripti 31.6 1.2E+02 0.0041 20.5 9.3 71 82-159 36-108 (293)
431 2xbl_A Phosphoheptose isomeras 31.6 70 0.0024 20.4 4.2 39 3-42 115-153 (198)
432 3eb2_A Putative dihydrodipicol 31.5 1.2E+02 0.0042 21.2 5.7 73 84-158 62-137 (300)
433 3qxc_A Dethiobiotin synthetase 31.4 88 0.003 21.2 4.8 37 2-38 19-56 (242)
434 3ipr_A PTS system, IIA compone 31.3 96 0.0033 19.2 4.8 87 5-128 2-96 (150)
435 3tak_A DHDPS, dihydrodipicolin 31.3 1.2E+02 0.0043 21.0 5.7 73 84-158 59-134 (291)
436 3ldv_A Orotidine 5'-phosphate 31.3 1.3E+02 0.0044 20.7 6.7 22 4-26 27-48 (255)
437 3c3k_A Alanine racemase; struc 31.2 1.2E+02 0.0041 20.4 7.8 69 82-159 24-94 (285)
438 4a8t_A Putrescine carbamoyltra 31.1 1.5E+02 0.0051 21.4 8.2 61 85-155 78-144 (339)
439 4gxw_A Adenosine deaminase; am 31.1 1.6E+02 0.0053 21.6 9.2 40 90-129 204-244 (380)
440 1k66_A Phytochrome response re 31.1 81 0.0028 18.4 7.7 73 82-160 16-101 (149)
441 1ys7_A Transcriptional regulat 30.9 1.1E+02 0.0037 19.8 9.1 70 83-160 18-88 (233)
442 2hmc_A AGR_L_411P, dihydrodipi 30.8 1.5E+02 0.0051 21.4 6.7 63 96-158 92-158 (344)
443 3kjx_A Transcriptional regulat 30.8 1.4E+02 0.0047 20.9 8.4 68 82-157 84-153 (344)
444 1byk_A Protein (trehalose oper 30.7 1.2E+02 0.0039 20.0 8.1 48 82-129 18-67 (255)
445 1vmd_A MGS, methylglyoxal synt 30.6 1.1E+02 0.0038 19.9 4.8 58 95-155 72-133 (178)
446 1f76_A Dihydroorotate dehydrog 30.5 1.4E+02 0.0049 21.1 7.0 34 96-129 211-247 (336)
447 3crn_A Response regulator rece 30.5 81 0.0028 18.2 8.3 70 83-160 14-84 (132)
448 3okf_A 3-dehydroquinate syntha 30.3 1.6E+02 0.0056 21.6 6.8 69 84-160 77-158 (390)
449 2w6r_A Imidazole glycerol phos 30.2 1.1E+02 0.0037 20.7 5.1 17 110-126 64-80 (266)
450 4f2g_A Otcase 1, ornithine car 30.2 1.5E+02 0.0051 21.1 7.9 61 85-155 60-126 (309)
451 2hnk_A SAM-dependent O-methylt 30.2 1.2E+02 0.0041 20.0 5.8 47 82-128 95-155 (239)
452 2nuw_A 2-keto-3-deoxygluconate 30.2 64 0.0022 22.5 4.0 51 107-158 76-130 (288)
453 2h3h_A Sugar ABC transporter, 30.1 1.3E+02 0.0045 20.5 7.8 72 82-159 16-90 (313)
454 2x7x_A Sensor protein; transfe 29.9 1.4E+02 0.0047 20.6 6.3 72 82-159 21-95 (325)
455 3f6c_A Positive transcription 29.9 82 0.0028 18.0 8.5 72 82-160 11-83 (134)
456 3bbl_A Regulatory protein of L 29.8 1.3E+02 0.0044 20.3 8.1 70 82-159 24-95 (287)
457 1u0t_A Inorganic polyphosphate 29.8 69 0.0023 22.6 4.1 38 1-38 1-39 (307)
458 5nul_A Flavodoxin; electron tr 29.7 90 0.0031 18.5 6.9 44 82-131 13-56 (138)
459 3daq_A DHDPS, dihydrodipicolin 29.7 1.4E+02 0.0047 20.8 5.7 74 84-158 60-135 (292)
460 1uqr_A 3-dehydroquinate dehydr 29.7 1.1E+02 0.0037 19.4 4.5 75 76-158 23-100 (154)
461 2o95_A 26S proteasome non-ATPa 29.6 76 0.0026 20.4 4.1 13 117-129 84-96 (187)
462 3u81_A Catechol O-methyltransf 29.6 1.2E+02 0.004 19.7 5.3 48 82-129 93-143 (221)
463 3roj_A D-fructose 1,6-bisphosp 29.5 1.5E+02 0.005 21.7 5.6 42 86-129 214-255 (379)
464 3na8_A Putative dihydrodipicol 29.5 1.1E+02 0.0037 21.7 5.1 74 84-158 82-157 (315)
465 3iv3_A Tagatose 1,6-diphosphat 29.4 1.6E+02 0.0055 21.2 8.3 79 82-160 146-254 (332)
466 3p0r_A Azoreductase; structura 29.4 71 0.0024 21.0 3.9 42 3-44 3-51 (211)
467 2r91_A 2-keto-3-deoxy-(6-phosp 29.3 64 0.0022 22.5 3.9 51 107-158 75-129 (286)
468 1dd9_A DNA primase, DNAG; topr 29.1 1.4E+02 0.0047 21.5 5.6 36 5-40 207-245 (338)
469 1sg6_A Pentafunctional AROM po 29.1 1.7E+02 0.0058 21.4 7.4 68 84-159 51-139 (393)
470 1sui_A Caffeoyl-COA O-methyltr 29.0 1.3E+02 0.0045 20.1 6.6 48 82-129 114-165 (247)
471 1jeo_A MJ1247, hypothetical pr 28.9 78 0.0027 19.8 4.0 39 3-42 81-119 (180)
472 3lvu_A ABC transporter, peripl 28.8 1.3E+02 0.0045 20.0 5.8 45 83-130 143-187 (258)
473 3d8u_A PURR transcriptional re 28.8 1.3E+02 0.0044 20.0 7.2 70 82-159 19-90 (275)
474 3u0h_A Xylose isomerase domain 28.7 38 0.0013 22.9 2.6 75 20-120 85-170 (281)
475 2y88_A Phosphoribosyl isomeras 28.7 1.1E+02 0.0039 20.2 5.0 49 109-157 151-199 (244)
476 2hqr_A Putative transcriptiona 28.6 1.2E+02 0.0041 19.5 7.6 66 83-160 11-77 (223)
477 2c92_A 6,7-dimethyl-8-ribityll 28.6 1.2E+02 0.004 19.4 5.5 73 82-156 33-114 (160)
478 3lwz_A 3-dehydroquinate dehydr 28.5 1.1E+02 0.0039 19.3 4.8 79 72-158 25-106 (153)
479 4drs_A Pyruvate kinase; glycol 28.5 1.2E+02 0.0042 23.4 5.5 44 108-160 412-456 (526)
480 2i0f_A 6,7-dimethyl-8-ribityll 28.4 1.2E+02 0.004 19.3 7.9 74 82-155 28-114 (157)
481 1gud_A ALBP, D-allose-binding 28.4 1.4E+02 0.0047 20.2 7.1 72 82-159 17-92 (288)
482 3kzf_A Carbamate kinase; argin 28.3 71 0.0024 22.9 3.9 41 1-41 2-56 (317)
483 1a3w_A Pyruvate kinase; allost 28.2 1.1E+02 0.0039 23.4 5.2 45 108-161 382-427 (500)
484 3cvj_A Putative phosphoheptose 28.2 59 0.002 21.8 3.5 37 4-41 108-144 (243)
485 1duv_G Octase-1, ornithine tra 28.2 1.7E+02 0.0058 21.1 6.0 62 84-155 58-125 (333)
486 1ii7_A MRE11 nuclease; RAD50, 28.1 82 0.0028 22.2 4.3 21 85-107 29-49 (333)
487 3b4u_A Dihydrodipicolinate syn 28.1 1.4E+02 0.0049 20.8 5.5 61 97-158 73-140 (294)
488 3rxy_A NIF3 protein; structura 28.0 45 0.0016 23.3 2.8 22 107-128 46-67 (278)
489 2isw_A Putative fructose-1,6-b 27.9 82 0.0028 22.6 4.2 73 87-159 8-83 (323)
490 1wot_A Putative minimal nucleo 27.8 19 0.00065 20.6 0.8 67 84-157 12-78 (98)
491 3g85_A Transcriptional regulat 27.8 1.1E+02 0.0038 20.5 4.9 71 82-160 28-100 (289)
492 4edg_A DNA primase; catalytic 27.7 53 0.0018 23.6 3.2 34 5-38 196-229 (329)
493 2ayx_A Sensor kinase protein R 27.7 1.4E+02 0.0047 19.9 7.2 70 83-160 140-210 (254)
494 4f3p_A Glutamine-binding perip 27.6 1.3E+02 0.0044 19.6 5.3 42 84-128 49-90 (249)
495 3kzn_A Aotcase, N-acetylornith 27.6 1.8E+02 0.0061 21.1 6.5 27 2-28 21-48 (359)
496 3t1i_A Double-strand break rep 27.5 95 0.0033 23.3 4.7 13 149-161 137-149 (431)
497 3si9_A DHDPS, dihydrodipicolin 27.4 1.4E+02 0.0048 21.2 5.4 74 84-158 80-155 (315)
498 4dik_A Flavoprotein; TM0755, e 27.4 1.9E+02 0.0064 21.4 6.7 49 82-132 280-331 (410)
499 1rvg_A Fructose-1,6-bisphospha 27.4 72 0.0025 22.7 3.8 71 88-159 8-80 (305)
500 3e96_A Dihydrodipicolinate syn 27.4 1.6E+02 0.0055 20.8 5.7 73 84-158 70-144 (316)
No 1
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.7e-30 Score=171.74 Aligned_cols=155 Identities=20% Similarity=0.214 Sum_probs=114.2
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccC-CCCCCCCCCCCccchhhhhhcCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWED-SGSPLIPLAEFSEPTIMKKYGAK 79 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
|+++++||||+|+++.+..++++|..+|+..+++|+++||.+........ ..+.. +......... ..+...+
T Consensus 2 ~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~ 74 (170)
T 2dum_A 2 IFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELM-DGYSFFYDNAEIELKD------IKEKLKE 74 (170)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC-------------CCTT------SHHHHHH
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-cccccccccccccHHH------HHHHHHH
Confidence 34789999999999999999999999999999999999998754311000 00000 0000000001 1111112
Q ss_pred CCchHHHHHHHHHHhcCceEEE--EEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 80 PDPETLDIVNTVARQKQIVVVM--KIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
..++.++.+.+.+...|+++++ .+..|++.++|+++|++.++||||||+++++.+.++++||++++|+++++||||+|
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 75 EASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEE
Confidence 3355677777777777998887 88899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 031168 158 KQGIH 162 (164)
Q Consensus 158 ~~~~~ 162 (164)
|+...
T Consensus 155 ~~~~~ 159 (170)
T 2dum_A 155 KEVDE 159 (170)
T ss_dssp CCCCC
T ss_pred ccCCc
Confidence 97654
No 2
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.97 E-value=1.5e-30 Score=169.57 Aligned_cols=146 Identities=21% Similarity=0.300 Sum_probs=102.5
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||+|++||||+|+++.+..++++|..+|+..+++|+++||.+....... .+... . + ....+ ..++ .
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~~~~--~--~-~~~~~--~~~~----~ 68 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDT---PYGTA--I--P-LDTET--TYDA----M 68 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC-----------CTTC--C--C-SSSCC--CHHH----H
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccccc---ccccc--c--C-cCHHH--HHHH----H
Confidence 8999999999999999999999999999999999999999886532100 00000 0 0 00111 0111 1
Q ss_pred CchHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 81 DPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.++..+.+.+.+++.|++ ++..+..|++.++|++++++.++||||||+++++.+. +++||++++|+++++||||+||+
T Consensus 69 ~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 69 LDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeC
Confidence 133445555555556777 5778899999999999999999999999999999999 99999999999999999999998
Q ss_pred CC
Q 031168 160 GI 161 (164)
Q Consensus 160 ~~ 161 (164)
..
T Consensus 148 ~~ 149 (150)
T 3tnj_A 148 RD 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 3
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.97 E-value=1.6e-30 Score=168.66 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=118.3
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+++.+..++++|..+|+..+++|+++||.+........ ... ......+...+..
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~ 67 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA-------------LDP--VLSELLDAEAAHA 67 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG-------------GHH--HHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-------------ccc--ccHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999876432110 000 1112222223445
Q ss_pred chHHHHHHHHHHhcCc-eEEEEEeeCChhHHHHH-HhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQI-VVVMKIFWGDPREKICE-AIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~-~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
++.++.+.+.+.+.|+ ++++++..|++.++|++ ++++.++||||||+++++.+.++++||++++++++++||||+||
T Consensus 68 ~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 68 KDAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 6677888888888899 99999999999999999 99999999999999999999999999999999999999999997
No 4
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.97 E-value=6.2e-30 Score=168.70 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=116.5
Q ss_pred CC-CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCC--CCCCCCccchhhhhhc
Q 031168 1 MD-GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPL--IPLAEFSEPTIMKKYG 77 (164)
Q Consensus 1 m~-~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 77 (164)
|. ++++||||+|+++.+..++++|..+|+..+++|+++||.+....... .+...+... .............+..
T Consensus 1 M~~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T 1mjh_A 1 MSVMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKR---DIFSLLLGVAGLNKSVEEFENELKNKL 77 (162)
T ss_dssp --CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHH
T ss_pred CccccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCcccccc---ccccccccccccccchhhhHHHHHHHH
Confidence 55 68999999999999999999999999999999999999875310000 000000000 0000000000111222
Q ss_pred CCCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 78 AKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
++..++.++.+.+.+...|++++.++..|++.++|++++++.++||||||+++++.+.++++||++++|+++++||||++
T Consensus 78 ~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv 157 (162)
T 1mjh_A 78 TEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVV 157 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEE
Confidence 23345667777777778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 031168 158 KQGI 161 (164)
Q Consensus 158 ~~~~ 161 (164)
|+..
T Consensus 158 ~~~~ 161 (162)
T 1mjh_A 158 KRKN 161 (162)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 8753
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.96 E-value=1.3e-29 Score=166.16 Aligned_cols=140 Identities=19% Similarity=0.162 Sum_probs=115.2
Q ss_pred CCCCceEEEEeC--CChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 1 MDGTRRVGVAVD--FSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 1 m~~~~~ILv~~d--~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|++|++||||+| +++.+..++++|..+|+..+++|+++||.+....... .... ....+...
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---------------~~~~--~~~~~~~~ 74 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIF---------------DSLT--PSKIQAKR 74 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC---------------CSSH--HHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc---------------ccCC--HHHHHHHH
Confidence 678999999999 9999999999999999999999999999987642110 0011 11222222
Q ss_pred CCCchHHHHHHHHHHhcCc-eEEEEEee-CChhHHHHHH-hhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 79 KPDPETLDIVNTVARQKQI-VVVMKIFW-GDPREKICEA-IDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~I~~~-a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
+..++.++.+.+.+...|+ .+++++.. |++.++|+++ |++.++||||||+++++.+. .++||++++|+++++||||
T Consensus 75 ~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVl 153 (156)
T 3fg9_A 75 KHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVI 153 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEE
Confidence 3456777888888888899 59999999 9999999999 99999999999999998887 5899999999999999999
Q ss_pred EEc
Q 031168 156 VVK 158 (164)
Q Consensus 156 vv~ 158 (164)
+||
T Consensus 154 vV~ 156 (156)
T 3fg9_A 154 VVR 156 (156)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.96 E-value=4.1e-29 Score=162.11 Aligned_cols=144 Identities=24% Similarity=0.199 Sum_probs=114.1
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
||++||||+|+++.+..++++|+.+|+..+++|+++||.+...... .+..... ........ +..+ +..+
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~----~~~~~~~-~~~~~~~~--~~~~----~~~~ 69 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLE----ASLSMAR-PEQLDIPD--DALK----DYAT 69 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHH----HTBSSCC-CGGGCCCT--THHH----HHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccc----ccccccC-hhhhhhHH--HHHH----HHHH
Confidence 4899999999999999999999999999999999999998653110 0000000 00000001 1111 2336
Q ss_pred hHHHHHHHHHHhcCceE---EEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 83 ETLDIVNTVARQKQIVV---VMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
+.++.+.+.+...|+++ +..+..|++.++|++++++.++||||||+++++.+.++++||++++++++++||||+|
T Consensus 70 ~~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 70 EIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 67788888888889887 9999999999999999999999999999999999999999999999999999999986
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.96 E-value=6.4e-29 Score=164.20 Aligned_cols=144 Identities=23% Similarity=0.222 Sum_probs=112.7
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEE--EEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILV--TVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
.++++||||+|+|+.+..++++|..+|+ .+++|+++ ||.+...... +.. . . .....+...+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~-------~~~--~-~------~~~~~~~~~~ 77 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA-------ADI--L-K------DESYKVTGTA 77 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------------CC
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc-------ccc--c-c------cHHHHHHHHH
Confidence 4689999999999999999999999999 99999999 8776542100 000 0 0 0011122334
Q ss_pred CCchHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 80 PDPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..++.++.+.+.+...|++ +++.+..|++.++|+++|++.++||||||+++++.+.++++||++++|+++++||||+||
T Consensus 78 ~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 78 PIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEe
Confidence 5567778888888888998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 031168 159 QGIH 162 (164)
Q Consensus 159 ~~~~ 162 (164)
+...
T Consensus 158 ~~~~ 161 (163)
T 1tq8_A 158 TTEG 161 (163)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.96 E-value=4.9e-29 Score=163.48 Aligned_cols=131 Identities=24% Similarity=0.275 Sum_probs=111.4
Q ss_pred CCCceEEEEeCC-ChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 2 DGTRRVGVAVDF-SACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 2 ~~~~~ILv~~d~-s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+|++||||+|+ ++.+..++++|..+|+..+++|+++||.+..... . +... +.
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~--------------------~--~~~~----~~ 75 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT--------------------K--DEDI----IE 75 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS--------------------C--HHHH----HH
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc--------------------c--HHHH----HH
Confidence 579999999999 9999999999999999999999999999854210 0 1111 12
Q ss_pred CchHHHHHHHHHHhcCceEEEE--EeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 81 DPETLDIVNTVARQKQIVVVMK--IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++.++.+.+.+.+.|++++.. +..|++.++|+++|++.++||||||+++++.+.++++||++++|+++++||||+|+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 76 AKETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 3567777788888888877655 55699999999999999999999999999999999999999999999999999986
No 9
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.96 E-value=9.3e-29 Score=158.95 Aligned_cols=136 Identities=21% Similarity=0.198 Sum_probs=112.8
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhc-ccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC-CCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNV-VRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA-KPD 81 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la-~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (164)
|++||||+|+++.+..++++|..+| +..+++|+++||.+........ .. ......+..+ +..
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~---------------~~-~~~~~~~~~~~~~~ 64 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEA---------------VL-AAYDEIEMKEEEKA 64 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHH---------------HH-HHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccccc---------------cc-CcHHHHHHHHHHHH
Confidence 5899999999999999999999999 9999999999999876432100 00 0001111222 344
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
++.++.+.+.+...|+++++.+..|++.++|+++++ ++||||||+++++.+.+++ ||++++++++++||||++|
T Consensus 65 ~~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 65 KLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 667788888888889999999999999999999999 8999999999999999999 9999999999999999997
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.96 E-value=1.7e-28 Score=157.67 Aligned_cols=136 Identities=23% Similarity=0.249 Sum_probs=104.1
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
||++||||+|+++.+..++++|..+|+..+++|+++||.++.... +.+. ......+ .. .+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~------~~~~-----~~~~~~~--~~-------~~ 60 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY------LGEP-----FFEEALR--RR-------LE 60 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------C--HH-------HH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcc------cccc-----chHHHHH--HH-------HH
Confidence 479999999999999999999999999999999999998743210 0000 0000000 00 11
Q ss_pred hHHHHHHHHHHhcCc-eEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQI-VVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+.+.+.....|+ ++++++..|++.++|++++++.++||||||+++++.+.++++||++++++++++||||++|
T Consensus 61 ~~~~~l~~~~~~~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 61 RAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 222333333333688 8788888999999999999999999999999999999999999999999999999999997
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.95 E-value=7.5e-28 Score=160.64 Aligned_cols=147 Identities=25% Similarity=0.488 Sum_probs=102.9
Q ss_pred CCceEEEEeCCCh---------hhHHHHHHHHhhccc---CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccc
Q 031168 3 GTRRVGVAVDFSA---------CSKKALQWAADNVVR---NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEP 70 (164)
Q Consensus 3 ~~~~ILv~~d~s~---------~~~~~l~~a~~la~~---~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (164)
.+++||||+|+++ .+..++++|+.++.+ .+++|+++||.+..... +...+... ...
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~------~~~~~~~~------~~~ 71 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG------FDDVDSIY------ASP 71 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------------CCC------CSH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccc------cccccccc------CCH
Confidence 5799999999999 999999999998744 68899999998644211 00000000 000
Q ss_pred hhhhhhc---CCCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHh
Q 031168 71 TIMKKYG---AKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVV 147 (164)
Q Consensus 71 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~ 147 (164)
....... .+..++.++.+.+.+...|+++++++..|++.++|++++++.++||||||+++++.+.++++||++++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl 151 (175)
T 2gm3_A 72 EDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCV 151 (175)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHH
Confidence 1111111 1123456667777777789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEcCCC
Q 031168 148 NNGSCPVTVVKQGI 161 (164)
Q Consensus 148 ~~~~~pVlvv~~~~ 161 (164)
++++||||+||+..
T Consensus 152 ~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 152 KHAECPVMTIKRNA 165 (175)
T ss_dssp HHCSSCEEEEECCG
T ss_pred hCCCCCEEEEcCCc
Confidence 99999999998754
No 12
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.95 E-value=7.2e-27 Score=150.60 Aligned_cols=139 Identities=19% Similarity=0.112 Sum_probs=108.5
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
||++||||+|+++.+..++++|..+|+..+++|+++||.+..+... ..... ...........+
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----------------~~~~~-~~~~~~~~~~~~ 63 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY----------------TGLID-VNMSSMQDRIST 63 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC----------------CCCEE-HHHHHHTTCCCC
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhh----------------ccccc-cchHHHHHHHHH
Confidence 4899999999999999999999999999999999999985421100 00000 011122223345
Q ss_pred hHHHHHHHHHHhcCceE-EEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 83 ETLDIVNTVARQKQIVV-VMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+..+.+.+.+...|+++ +..+..|++.++|++++++.++||||||++ ++.+.+ +||++++++++++||||++|+..
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 64 ETQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHHHHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 56666667676778876 577888999999999999999999999999 887776 38999999999999999999764
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.95 E-value=1.2e-27 Score=154.62 Aligned_cols=138 Identities=18% Similarity=0.299 Sum_probs=106.6
Q ss_pred CceEEEEeCCChh--hHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 4 TRRVGVAVDFSAC--SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 4 ~~~ILv~~d~s~~--~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.|+||||+|+++. +..++++|..+|+..+++|+++||.+...... ..+..... . . +..+ +..
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-------~~~~~~~~--~-~--~~~~----~~~ 64 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYA-------SLGMAYTA--E-L--PGMD----ELR 64 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------------------CHH----HHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccc-------cccccccc--h-h--hhHH----HHH
Confidence 4899999999999 99999999999999999999999998753211 01100000 0 0 0111 122
Q ss_pred chHHHHHHHHHHhcCc---eEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQI---VVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
++.++.+.+.+++.++ ++++.+..|++.++|++++++.++||||||+++ +.+.++++||++++++++++||||++|
T Consensus 65 ~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 65 EGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 4566777777777654 578889999999999999999999999999995 888999999999999999999999997
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.94 E-value=3.1e-27 Score=171.12 Aligned_cols=148 Identities=20% Similarity=0.146 Sum_probs=115.3
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||+|++|||++|+|+.+..++++|+.+|+..+++|+++|+.+..+.... .. ......+...+...+.
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~ 70 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT----------TL---LSPDERNAMRKGVINQ 70 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT----------TT---SCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc----------cc---cChhhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999865321100 00 0000111111222223
Q ss_pred CchHHHHHHHHHHhcCceEEEEEe-eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIF-WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.++.++.+.+.+...|+++++.+. .|++.+.|++.+++.++||||||+++++.+.++++||++.+++++++||||++|+
T Consensus 71 ~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 71 KTAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEES
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecC
Confidence 355666777777778999999998 8999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 031168 160 GI 161 (164)
Q Consensus 160 ~~ 161 (164)
..
T Consensus 151 ~~ 152 (319)
T 3olq_A 151 KE 152 (319)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.94 E-value=8.5e-27 Score=167.20 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=117.5
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||+|++||||+|+++.+..++++|+.+|+..+++|+++||.+........ ... ......+..++.
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~--------------~~~-~~~~~~~~~~~~ 83 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVS--------------GGI-DIDHYIDEMSEK 83 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------------------CC-CTTHHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccc--------------ccc-cHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999876422100 000 011122222234
Q ss_pred CchHHHHHHHHHHhcCceEEE-EEe-eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 81 DPETLDIVNTVARQKQIVVVM-KIF-WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++.++.+.+.+...|++++. .+. .|++.++| ++++.++||||||+++++.+.++++||++++++++++||||++|
T Consensus 84 ~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~ 161 (294)
T 3loq_A 84 AEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEec
Confidence 467788888888888999998 777 89999999 99999999999999999999999999999999999999999999
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
+..
T Consensus 162 ~~~ 164 (294)
T 3loq_A 162 HDM 164 (294)
T ss_dssp CCT
T ss_pred Ccc
Confidence 764
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.93 E-value=9.4e-26 Score=161.52 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=113.4
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|++|++|||++|+++.+..++++|+.+|+..+++|+++|+.++ +.
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-----------------------------------~~ 48 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-----------------------------------RD 48 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-----------------------------------SC
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-----------------------------------HH
Confidence 7789999999999999999999999999999999999999862 13
Q ss_pred CchHHHHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.++.++.+.+.+...|+++++.+.. |++.+.|++++++.++||||||+++++.+.++++||++++++++++||||++|+
T Consensus 49 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~ 128 (290)
T 3mt0_A 49 HSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKT 128 (290)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecC
Confidence 3567777777778889999999884 789999999999999999999999999999999999999999999999999995
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 129 ~ 129 (290)
T 3mt0_A 129 A 129 (290)
T ss_dssp C
T ss_pred C
Confidence 3
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.92 E-value=1.7e-24 Score=156.30 Aligned_cols=142 Identities=20% Similarity=0.284 Sum_probs=111.9
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
+++++|||++|+++.+..++++|..+|+..+++|+++||.++... .|... .... ...+...+..
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~------~~~~~--------~~~~--~~~~~~~~~~ 80 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA------TWLEV--------PLPP--GVLRWQQDHG 80 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC------CTTCC--------CCCH--HHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc------ccccC--------CCCc--hhhHHHHHHH
Confidence 468999999999999999999999999999999999999873321 11100 0000 1111111233
Q ss_pred chHHHHHHHHHHhc-----CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQK-----QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
++.++.+.+.+.+. |+++++.+..|++.++|+++++ ++||||||+++++.+.++++||++++|+++++||||+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlv 158 (309)
T 3cis_A 81 RHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVI 158 (309)
T ss_dssp HHHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEE
Confidence 55666677666654 8999999999999999999997 6999999999999999999999999999999999999
Q ss_pred EcCCC
Q 031168 157 VKQGI 161 (164)
Q Consensus 157 v~~~~ 161 (164)
+|...
T Consensus 159 v~~~~ 163 (309)
T 3cis_A 159 IHDED 163 (309)
T ss_dssp ECTTC
T ss_pred EcCCc
Confidence 98754
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=1.2e-24 Score=155.84 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=108.3
Q ss_pred CCceEEEEeCCChh-------hHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhh
Q 031168 3 GTRRVGVAVDFSAC-------SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKK 75 (164)
Q Consensus 3 ~~~~ILv~~d~s~~-------~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (164)
.+++||||+|+++. +..++++|..+|+..+++|+++||.+....... .... ...+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--------------~~~~---~~~~~ 195 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSA--------------DPTF---QLSET 195 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-----------------------CH---HHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccccc--------------Cchh---HHHHH
Confidence 47899999999998 899999999999999999999999986542100 0000 01111
Q ss_pred hcCCCCchHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcE
Q 031168 76 YGAKPDPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPV 154 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pV 154 (164)
..++..+.+.+++++.|++ ++..+..|++.++|++++++.++||||||+++++.+.++++||++++++++++|||
T Consensus 196 ----~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pV 271 (290)
T 3mt0_A 196 ----IEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDV 271 (290)
T ss_dssp ----HHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEE
T ss_pred ----HHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCE
Confidence 1133445555566666884 67778899999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC
Q 031168 155 TVVKQGI 161 (164)
Q Consensus 155 lvv~~~~ 161 (164)
|++|+..
T Consensus 272 Lvv~~~~ 278 (290)
T 3mt0_A 272 LVLKPDD 278 (290)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998753
No 19
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.91 E-value=6.2e-24 Score=152.28 Aligned_cols=127 Identities=31% Similarity=0.449 Sum_probs=115.5
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
..+++|||++|+++.+..++++|..+++..+++|+++||.+... .
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------------------------------~ 212 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------------------------------K 212 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------------------------------C
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------------------------------H
Confidence 35789999999999999999999999999999999999987541 2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
++.++.+.+.+.+.|++++..+..|++.++|++++++.++||||||+++++.+.++++||++++++++++||||++|+..
T Consensus 213 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 213 TADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCC
Confidence 55777788888888999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 031168 162 HE 163 (164)
Q Consensus 162 ~~ 163 (164)
++
T Consensus 293 ~~ 294 (294)
T 3loq_A 293 DE 294 (294)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.91 E-value=1.5e-24 Score=139.19 Aligned_cols=133 Identities=15% Similarity=0.079 Sum_probs=97.9
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe-cC-CCCCccccccccCCCCCCCCCCCCccchhhhhhcCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV-PE-GGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
.+|++||||+|+++.+..++++|..+|+..+++|+++||. +. +... .+...+. +.. . ...+...+
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-----~~~~~~~---~~~---~--~~~~~~~~ 68 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLER-----ANVTFGL---PFP---P--EIKEESKK 68 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHH-----HHHHHCC---CCC---T--HHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccc-----cccccCC---CCC---h--HHHHHHHH
Confidence 4689999999999999999999999999999999999998 63 1000 0000000 000 0 11111112
Q ss_pred CCchHHHHHHHH--HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 80 PDPETLDIVNTV--ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
..++.++.+ +. ....| ++++++..|++.++|++++++.++||||||++++ |++++|+++++||||++
T Consensus 69 ~~~~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 69 RIERRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHHHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEEC
T ss_pred HHHHHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEee
Confidence 234455555 44 34456 7888888999999999999999999999999865 89999999999999998
Q ss_pred c
Q 031168 158 K 158 (164)
Q Consensus 158 ~ 158 (164)
|
T Consensus 138 ~ 138 (138)
T 1q77_A 138 K 138 (138)
T ss_dssp C
T ss_pred C
Confidence 6
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.91 E-value=3.9e-24 Score=151.38 Aligned_cols=149 Identities=18% Similarity=0.063 Sum_probs=111.6
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccch-hhhhhcCCCCch
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPT-IMKKYGAKPDPE 83 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (164)
++||||+|+|+.+..++++|..+|+..+++|+++||.+...... ... .+... ...+..+.+ ...+...+..++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~---~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARI---PEL--LDFGA-LTVPVPVLRTELERALALRGEA 74 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTH---HHH--C--------CHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCccc---ccc--cCchH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987542110 000 00000 001110000 001111233456
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC-ccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG-KLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~-~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
.++.+.+.+...|+++++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++||||++|+..
T Consensus 75 ~l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 75 VLERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 77777777878899999999999999999999 778999999999998 89999999999999999999999999653
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=6.9e-23 Score=148.26 Aligned_cols=143 Identities=16% Similarity=0.217 Sum_probs=111.1
Q ss_pred CCceEEEEeCCCh-------hhHHHHHHHHhhcccC--CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhh
Q 031168 3 GTRRVGVAVDFSA-------CSKKALQWAADNVVRN--GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIM 73 (164)
Q Consensus 3 ~~~~ILv~~d~s~-------~~~~~l~~a~~la~~~--~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (164)
.+++|||++|+++ .+..++++|..+|+.. +++|+++||.+...... + .+ ...... ...
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~-----~--~~-----~~~~~~-~~~ 221 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI-----A--IE-----LPDFDP-NLY 221 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC-----C--TT-----CTTCCH-HHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh-----h--cc-----CCcccH-HHH
Confidence 4789999999999 5699999999999998 99999999998764221 0 00 000110 011
Q ss_pred hhhcCCCCchHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCC
Q 031168 74 KKYGAKPDPETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSC 152 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~ 152 (164)
.+ +..++..+.+.+++.+.|+. ++.++..|++.++|++++++.++||||||+++++.+.++++||++++|+++++|
T Consensus 222 ~~---~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~ 298 (319)
T 3olq_A 222 NN---ALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKC 298 (319)
T ss_dssp HH---HHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCS
T ss_pred HH---HHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCC
Confidence 11 12234555666666677763 567788899999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCC
Q 031168 153 PVTVVKQGI 161 (164)
Q Consensus 153 pVlvv~~~~ 161 (164)
|||++|+.+
T Consensus 299 pVLvv~~~~ 307 (319)
T 3olq_A 299 DLLAIKPDG 307 (319)
T ss_dssp EEEEECCTT
T ss_pred CEEEECCCC
Confidence 999998765
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.89 E-value=3e-22 Score=144.45 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=105.2
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++|||++|+++.+..++++|..+|+..+++|+++||.+..... + .... ..+...+. .+
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~----------~-----~~~~-~~~~~~~~----~~ 229 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS----------E-----WPGI-DWPATQSM----AE 229 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT----------T-----CSSC-CHHHHHHH----HH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc----------C-----CCcc-cHHHHHHH----HH
Confidence 468999999999999999999999999999999999998754311 0 0000 00111111 12
Q ss_pred hHHHHHHHHHHh--cCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQ--KQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
+.++.+.+.+.+ .+++++.++..|++.++|+++++ ++||||||+++++.+.++++||++++|+++++||||++|+.
T Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 230 QVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp HHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 233333333322 58889998999999999999998 79999999999999999999999999999999999999864
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.86 E-value=1.6e-21 Score=138.01 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=102.1
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++|||++|+++.+..++++|..++...+++|+++|+.+... ..+
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~----------------------------------~~~ 198 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA----------------------------------RAE 198 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH----------------------------------HHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH----------------------------------HHH
Confidence 4689999999999999999999999999999999999986420 113
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+.++.+.+.+.+.|++++.++..|++.++|++++++. ||||||+ .+.++++||++++++++++||||++|
T Consensus 199 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 199 AWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 4566777777778999999888999999999999998 9999998 67888999999999999999999986
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.34 E-value=0.0062 Score=37.87 Aligned_cols=129 Identities=17% Similarity=0.074 Sum_probs=88.5
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCC-CEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNG-DHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~-~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|++|||-+.-+-.+..+......+..... ..+.++--.++. +.|.. +..... ..++
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~-------~a~~~------------e~~~a~----~~A~ 57 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPP-------PGWVY------------EENEVR----RRAE 57 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECC-------CCSCC--------------CHHH----HHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCC-------ccccc------------ChHHHH----HHHH
Confidence 38999999887777766666566665554 665444322221 01111 101111 2235
Q ss_pred hHHHHHHHHHHhcCceEE-EEEeeCChhHHHHHHhhhcC--CcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 83 ETLDIVNTVARQKQIVVV-MKIFWGDPREKICEAIDKIP--LSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~--~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
+.++.-...++..|+..+ -.+..++|...+.+...+.+ +|=||+-+..+ ..++||-...+.+.=+ ...||+=+
T Consensus 58 ~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 58 EEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhccHHHHHHh-cCCCEEEE
Confidence 566666677788899988 99999999999999999999 99999988744 3566777788888877 89999854
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=96.52 E-value=0.019 Score=41.23 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=67.1
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCE-EEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDH-LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.++|+|++++..+|..++..+..+....+.+ +.++|+..... ....
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r---------------------------------~~s~ 70 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR---------------------------------ESAE 70 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS---------------------------------THHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC---------------------------------cccH
Confidence 4689999999999998888887776666777 99999975431 0113
Q ss_pred hHHHHHHHHHHhcCceEEEEEee--------C-Chh--------HHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW--------G-DPR--------EKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--------g-~~~--------~~I~~~a~~~~~dliVig~~~ 130 (164)
+-.+.+++.|+..|+++...-.. | ++. ..+.+.+++.+++.|+.|.+.
T Consensus 71 ~~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 71 RDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 45667778888889987665431 2 111 245567888999999999873
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.34 E-value=0.023 Score=43.07 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=69.3
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
-++|+|++++..+|..++..+..+....+.++.++||...... .....
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg--------------------------------~~s~~ 65 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG--------------------------------RESEE 65 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT--------------------------------HHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc--------------------------------cccHH
Confidence 4689999999999998888888887777889999999754310 00134
Q ss_pred HHHHHHHHHHhcCceEEEEEee--------C-Ch--------hHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW--------G-DP--------REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+.+++.|+..|+++...-.. | ++ ...+.+.+++.+++.|++|.+.
T Consensus 66 ~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 66 EMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred HHHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 5677888888899987665432 1 11 1345677888999999999863
No 28
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.57 E-value=0.012 Score=41.55 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=66.3
Q ss_pred hhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhc
Q 031168 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (164)
Q Consensus 16 ~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
+..-++-.|..|....+++|.++.|++... .. +.+++.++.+.+.+
T Consensus 177 Ng~LmlllAylL~~nW~A~I~L~~vV~de~---------------------------a~----~~a~~~l~~Lv~~~--- 222 (294)
T 3g40_A 177 NMDLALLIAYKLKSNWKASLSFMTFAPTAI---------------------------QA----QAAENFLQSLAELA--- 222 (294)
T ss_dssp TTHHHHHHHHHHHHHHTCEEEEEEECSSHH---------------------------HH----HHHHHHHHHHHHHH---
T ss_pred chhHHHHHHHHHhhCcCCeEEEEEecCCHH---------------------------HH----HHHHHHHHHHHHHh---
Confidence 444455666666666799999999987542 11 11234444444444
Q ss_pred CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCCCC
Q 031168 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGIHE 163 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~~~ 163 (164)
.+..+..++. .+..+|+..+ -++||+++|-.....+. ...++...+....|++.+.+.+
T Consensus 223 Ri~a~~~vv~-~~F~~il~~s--~~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg~e 281 (294)
T 3g40_A 223 RIPNVKMQVL-RENPIKSSKL--PFASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSGEE 281 (294)
T ss_dssp TCCSCEEEEE-SSCTTTSSSC--CCCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCSCC
T ss_pred cCCceEEEec-CchHHHHhhC--cCCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCchh
Confidence 3433223334 5566666665 45999999997554433 5678888888888999887754
No 29
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=95.55 E-value=0.14 Score=33.46 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-Chh---HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPR---EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~---~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...+...+.+++.|++++..+..- ... .++.+.+++.+++.||.|..+.+.+. .-+...+..||+-||
T Consensus 36 ~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------GvvAa~T~~PVIGVP 107 (181)
T 4b4k_A 36 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGVP 107 (181)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch--------hhHHhcCCCCEEEEe
Confidence 466777888888999999998876 333 44455566678899999988665443 346668899999999
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
...
T Consensus 108 v~s 110 (181)
T 4b4k_A 108 VQS 110 (181)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 30
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=95.48 E-value=0.071 Score=38.46 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=63.5
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.+|+|++++..+|..++..+..+....+.++.++|+.....+ .+
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~-----------------------------------~e 90 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF-----------------------------------QE 90 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC-----------------------------------HH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC-----------------------------------HH
Confidence 5689999999999998888888876554557888888654321 33
Q ss_pred HHHHHHHHHHhcCceEEEEEee-----CC-h-------------hHHHHHHhhhcCCcEEEEeecCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-----GD-P-------------REKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-----g~-~-------------~~~I~~~a~~~~~dliVig~~~~ 131 (164)
..+.+.+.++..|+++...... |. . .+.+.+.++++++|.++.|.+..
T Consensus 91 t~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 91 MYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp HHHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 5566667777778876554221 21 1 02355667777899999998753
No 31
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=95.34 E-value=0.19 Score=32.35 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHH---hhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...++....++..|+.++..+..- ...+.+.++ +++.+++.||.+....+.+ ..-+...+.+||+-||
T Consensus 19 ~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP 90 (166)
T 3oow_A 19 STMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHL--------PGMVAAKTTLPVLGVP 90 (166)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCH--------HHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhh--------HHHHHhccCCCEEEee
Confidence 466777888888999999988875 334444444 4556789999888765543 3446678899999998
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
...
T Consensus 91 ~~~ 93 (166)
T 3oow_A 91 VKS 93 (166)
T ss_dssp CCC
T ss_pred cCc
Confidence 643
No 32
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=95.12 E-value=0.015 Score=39.47 Aligned_cols=86 Identities=8% Similarity=-0.090 Sum_probs=59.3
Q ss_pred CCceEEEEeCC-----ChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhc
Q 031168 3 GTRRVGVAVDF-----SACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYG 77 (164)
Q Consensus 3 ~~~~ILv~~d~-----s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (164)
.|++|||-++. .+.+..++..|.+|+...+.+++++.+-+..
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~--------------------------------- 48 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL--------------------------------- 48 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC---------------------------------
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH---------------------------------
Confidence 46789999874 3568899999999998888889888776431
Q ss_pred CCCCchHHHHHHHHHHhcCceEEEEEee----C-C---hhHHHHHHhhhcCCcEEEEeec
Q 031168 78 AKPDPETLDIVNTVARQKQIVVVMKIFW----G-D---PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g-~---~~~~I~~~a~~~~~dliVig~~ 129 (164)
+...+. +...|..--..+.. + + .+..|.+.++++++|+|++|..
T Consensus 49 ----~~~~~~----~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t 100 (217)
T 3ih5_A 49 ----KEIEKQ----ILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGAT 100 (217)
T ss_dssp ----TTTHHH----HGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECS
T ss_pred ----HHHHHH----HHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 122222 22457653333322 2 2 3567888999999999999975
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=94.96 E-value=0.19 Score=32.12 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
...++....++..|++++..+..- ...+.+.+++++...+.||.+....+.+ ..-+...+.+||+-||.
T Consensus 13 ~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~L--------pgvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 13 KIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHL--------PGVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCH--------HHHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhh--------HHHHHhccCCCEEEecC
Confidence 356777788888999999988876 5567777887765558888887765543 34466788999999986
No 34
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=94.96 E-value=0.17 Score=32.71 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-Ch---hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DP---REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~---~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...++....+++.|++++..+..- .. ...+.+.+++.+++.||.+....+. ...-+...+.+||+-||
T Consensus 20 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~--------LpgvvA~~t~~PVIgVP 91 (169)
T 3trh_A 20 STMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAH--------LAGTIAAHTLKPVIGVP 91 (169)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCC--------HHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhh--------hHHHHHhcCCCCEEEee
Confidence 356777888888999999888775 33 3444455566788988888776544 33446678899999998
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
...
T Consensus 92 ~~~ 94 (169)
T 3trh_A 92 MAG 94 (169)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 35
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=94.77 E-value=0.21 Score=32.41 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-Chh---HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPR---EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~---~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...++....+++.|++++..+..- ... .++.+.++..+++.||.+....+.+. .-+.-.+.+||+-||
T Consensus 26 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------gvvA~~t~~PVIgVP 97 (173)
T 4grd_A 26 DVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP--------GMLAAKTTVPVLGVP 97 (173)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH--------HHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch--------hhheecCCCCEEEEE
Confidence 366777788888999999888775 333 44555566678899998887655433 346667899999998
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
-.
T Consensus 98 v~ 99 (173)
T 4grd_A 98 VA 99 (173)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 36
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=94.76 E-value=0.71 Score=32.63 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=76.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|||++.........++++..+....| -++++++.+.... ....+.+
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~~G-~ltv~~i~p~~~~--------------------------------~~l~~ql 68 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYPKG-SVKLLGLAGNTDK--------------------------------ENLLSQL 68 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTTTC-EEEEEECC---CT--------------------------------TCHHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhccCce-eEEEEEEccCCCc--------------------------------cHHHHHH
Confidence 699999777778889999999985554 8999988654321 1101224
Q ss_pred HHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhh-----cCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 86 DIVNTVARQKQIVVVMKIFWG-DPREKICEAIDK-----IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~-----~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+.+++.+++.++...+.+... ++...+....+. ..++.|++|......-..- +..+...+ ++...-|++++.
T Consensus 69 ~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~-y~~~i~~~-~~~~~nVlil~~ 146 (294)
T 3g40_A 69 PSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEE-IREIIRKA-SMYRMGVLLFSK 146 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHH-HHHHHHHH-HHTTCEEEEEEC
T ss_pred HHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHH-HHHHHHHH-HHhCceEEEEec
Confidence 888999999999988877664 777776665544 4578999998754322211 22333332 345788888865
Q ss_pred CC
Q 031168 160 GI 161 (164)
Q Consensus 160 ~~ 161 (164)
.+
T Consensus 147 ~~ 148 (294)
T 3g40_A 147 HP 148 (294)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 37
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=94.72 E-value=0.16 Score=33.01 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhH---HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPRE---KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~---~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
-...++....+++.|++++..+..- ...+ ++.+.+++.+++.||.+....+.+ ..-+...+.+||+-|
T Consensus 25 ~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgV 96 (174)
T 3kuu_A 25 WATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHL--------PGMLAAKTLVPVLGV 96 (174)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCH--------HHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhh--------HHHHHhccCCCEEEe
Confidence 3466777888889999999888875 3344 444445567789888888765543 344667889999999
Q ss_pred cCC
Q 031168 158 KQG 160 (164)
Q Consensus 158 ~~~ 160 (164)
|..
T Consensus 97 P~~ 99 (174)
T 3kuu_A 97 PVQ 99 (174)
T ss_dssp EEC
T ss_pred eCC
Confidence 864
No 38
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=94.63 E-value=0.26 Score=31.92 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHH---hhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
-...++....+++.|++++..+..- ...+.+.++ +++.+++.||.+....+.+ ..-+...+.+||+-|
T Consensus 24 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgV 95 (170)
T 1xmp_A 24 WETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHL--------PGMVAAKTNLPVIGV 95 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhh--------HHHHHhccCCCEEEe
Confidence 3466777888888999999988875 344444454 4456688888888765543 344667889999999
Q ss_pred cCCC
Q 031168 158 KQGI 161 (164)
Q Consensus 158 ~~~~ 161 (164)
|...
T Consensus 96 P~~~ 99 (170)
T 1xmp_A 96 PVQS 99 (170)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8643
No 39
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=94.61 E-value=0.16 Score=32.68 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-ChhHH---HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREK---ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~---I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...++....++..|++++..+..- ...+. +.+.+++.+++.||.+....+.+ ..-+...+.+||+-||
T Consensus 17 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP 88 (163)
T 3ors_A 17 KIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHL--------PGMVASLTTLPVIGVP 88 (163)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhh--------HHHHHhccCCCEEEee
Confidence 356777888888999999988775 33444 44555566789888888765543 3446667899999998
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 89 ~~ 90 (163)
T 3ors_A 89 IE 90 (163)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 40
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=94.57 E-value=0.81 Score=34.57 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
...+||+|++++.-++..++.++.+. +.+|+++|+...
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 35679999999999998888777552 779999998754
No 41
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=94.50 E-value=0.16 Score=32.95 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-C---hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-D---PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~---~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...++....++..|++++..+..- . ...++.+.+++.+++.||.+....+.+ ..-+...+.+||+-||
T Consensus 21 ~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP 92 (174)
T 3lp6_A 21 PVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHL--------PGMVAAATPLPVIGVP 92 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhh--------HHHHHhccCCCEEEee
Confidence 456777888888999999888775 2 245555556667889888888765543 3446667899999998
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 93 ~~ 94 (174)
T 3lp6_A 93 VP 94 (174)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 42
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=94.50 E-value=0.18 Score=33.02 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-Chh---HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPR---EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~---~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
-...++....++..|++++..+..- ... .++.+.++..+++.||.+....+.+. .-+...+++||+-|
T Consensus 26 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 97 (183)
T 1o4v_A 26 LPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--------GMVASITHLPVIGV 97 (183)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH--------HHHHhccCCCEEEe
Confidence 3466777888888999999988875 333 44445555667898888887655433 44666789999999
Q ss_pred cCCC
Q 031168 158 KQGI 161 (164)
Q Consensus 158 ~~~~ 161 (164)
|...
T Consensus 98 P~~~ 101 (183)
T 1o4v_A 98 PVKT 101 (183)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8643
No 43
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=94.45 E-value=0.79 Score=32.00 Aligned_cols=83 Identities=16% Similarity=0.178 Sum_probs=53.4
Q ss_pred EeCCChhhHHHHHHHHhhcccCCC--EEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHH
Q 031168 10 AVDFSACSKKALQWAADNVVRNGD--HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDI 87 (164)
Q Consensus 10 ~~d~s~~~~~~l~~a~~la~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
+...++.+..+++.|.+|+.+.+. +|+++.+-+.. ..+.
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~---------------------------------------~~~~ 72 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR---------------------------------------VDES 72 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG---------------------------------------GHHH
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh---------------------------------------HHHH
Confidence 334567788999999999877666 88888776421 2223
Q ss_pred HHHHHHhcCceEEEEEee----C-C---hhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 88 VNTVARQKQIVVVMKIFW----G-D---PREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~----g-~---~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
+++.+ ..|..--.++.. + + .+..|.+.+++.++|+|++|.....
T Consensus 73 lr~al-a~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 73 LRKCL-AKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp HHHHH-HTTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred HHHHH-hcCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 33332 347764444432 1 2 2456777788888999999987543
No 44
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=94.41 E-value=0.45 Score=35.53 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
|...++|+|++++.-+|..++.++.+. +.+|+.+|+...
T Consensus 2 ~~~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 2 MSSKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp ---CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 445679999999999888777776553 678999988753
No 45
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=94.34 E-value=0.46 Score=32.13 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=51.3
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|..++||.|-+.++.....++-.+.. ....+++|. .|+...+-
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~-~~~~~~~I~--~Vis~~~~---------------------------------- 47 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFS-TEESSVVIS--CVISNNAE---------------------------------- 47 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTC-CC-CSEEEE--EEEESCTT----------------------------------
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHH-cCCCCcEEE--EEEeCCcc----------------------------------
Confidence 45577999999999877655554442 112234444 44443210
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
... .+.+++.|+++...-...-..+++.+..++.++|++|+....
T Consensus 48 -a~~----l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 48 -ARG----LLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp -CTH----HHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred -hHH----HHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 001 255777898866422211123788899999999999997653
No 46
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=94.26 E-value=0.4 Score=31.94 Aligned_cols=39 Identities=15% Similarity=-0.086 Sum_probs=27.9
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
||.+++|+|++++..+|..++..+. ..+.++.++|+...
T Consensus 3 ~m~~~kv~v~~SGG~DS~~ll~ll~----~~g~~v~~~~v~~~ 41 (203)
T 3k32_A 3 AMKLMDVHVLFSGGKDSSLSAVILK----KLGYNPHLITINFG 41 (203)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHH----HTTEEEEEEEEECS
T ss_pred cccCCeEEEEEECcHHHHHHHHHHH----HcCCCeEEEEEeCC
Confidence 5677899999999998887665443 35678999988753
No 47
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=94.19 E-value=0.095 Score=39.89 Aligned_cols=112 Identities=20% Similarity=0.155 Sum_probs=73.5
Q ss_pred hhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhc
Q 031168 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (164)
Q Consensus 16 ~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
....+|..|++.|...+.+|.++++.++.... .. . ....-.-+.++.+++.+++.
T Consensus 50 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-------------------~~---~---~r~~Fl~~sL~~L~~~L~~~ 104 (482)
T 2xry_A 50 EDNWALLFSRAIAKEANVPVVVVFCLTDEFLE-------------------AG---I---RQYEFMLKGLQELEVSLSRK 104 (482)
T ss_dssp SSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG-------------------SC---H---HHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHcCCcEEEEEEeChhhhc-------------------cC---H---HHHHHHHHHHHHHHHHHHHc
Confidence 34568888888776667789999999865210 00 0 00012345677777778777
Q ss_pred CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
|+.+. +..|++.+.|.+.+++.+++.|+..... ..... .....+.....+++..+..
T Consensus 105 G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 105 KIPSF--FLRGDPGEKISRFVKDYNAGTLVTDFSP-LRIKN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp TCCEE--EEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHH----HHHHHHHHHCCSCEEEECC
T ss_pred CCcEE--EEeCCHHHHHHHHHHHcCCCEEEEeccc-chhHH----HHHHHHHHHcCCEEEEEeC
Confidence 87654 5679999999999999999999986542 22111 1223444445788877654
No 48
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=94.11 E-value=0.32 Score=36.53 Aligned_cols=92 Identities=17% Similarity=0.080 Sum_probs=62.7
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhccc-CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVR-NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~-~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.++|+|++++..+|..++..+..+... .+.++.++||..... ....
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr---------------------------------~~s~ 59 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS---------------------------------ANAD 59 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC---------------------------------SSHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC---------------------------------cccH
Confidence 478999999999999888888887766 678999999975431 0113
Q ss_pred hHHHHHHHHHHhcCceEEEEEee----C-Ch---h-----HHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW----G-DP---R-----EKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~----g-~~---~-----~~I~~~a~~~~~dliVig~~~ 130 (164)
+..+.+++.|+..|+++...-.. | ++ + ..+.+.++ +++.|++|.+.
T Consensus 60 ~~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~ 118 (433)
T 1ni5_A 60 AWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHL 118 (433)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccc
Confidence 45667888888889886665322 2 11 1 12223333 37889998763
No 49
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=94.00 E-value=0.35 Score=31.66 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHH---hhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEA---IDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
-...++....++..|++++..+..- ...+.+.++ ++..+++.||.+....+.+ ..-+...+.+||+-|
T Consensus 34 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgV 105 (182)
T 1u11_A 34 WETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHL--------PGMCAAWTRLPVLGV 105 (182)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhh--------HHHHHhccCCCEEEe
Confidence 3466777888888999999988875 334444444 4456688888888765543 344667789999999
Q ss_pred cCCC
Q 031168 158 KQGI 161 (164)
Q Consensus 158 ~~~~ 161 (164)
|...
T Consensus 106 P~~~ 109 (182)
T 1u11_A 106 PVES 109 (182)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8643
No 50
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=93.95 E-value=0.8 Score=30.65 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=58.6
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+|+|++++..+|..++..+..+. .++.++|+..... ..+.
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~-----------------------------------~~e~ 85 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYL-----------------------------------FPET 85 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCB-----------------------------------CHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCC-----------------------------------CHHH
Confidence 489999999999988887777664 3578888875431 1334
Q ss_pred HHHHHHHHHhcCceEEEEEeeCCh---------------h-----------HHHHHHhhhcCCcEEEEeecC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDP---------------R-----------EKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~---------------~-----------~~I~~~a~~~~~dliVig~~~ 130 (164)
.+.+++.++..|+++...-..-.. . ..+.+.+++++++.+++|.+.
T Consensus 86 ~~~v~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~ 157 (215)
T 1sur_A 86 YRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRR 157 (215)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCT
T ss_pred HHHHHHHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeh
Confidence 566777788889887655322111 0 023456677778889999874
No 51
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=93.88 E-value=0.36 Score=30.91 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHh---hhc-CCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAI---DKI-PLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~-~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
...++....+++.|++++..+..- ...+.+.+++ +.. +++.||.+....+.+ ..-+...+.+||+-|
T Consensus 16 ~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgV 87 (159)
T 3rg8_A 16 GHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNAL--------SGFVDGFVKGATIAC 87 (159)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCH--------HHHHHHHSSSCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhh--------HHHHHhccCCCEEEe
Confidence 356777888888999999888775 3344454544 443 588999888765543 344666789999999
Q ss_pred cCC
Q 031168 158 KQG 160 (164)
Q Consensus 158 ~~~ 160 (164)
|..
T Consensus 88 P~~ 90 (159)
T 3rg8_A 88 PPP 90 (159)
T ss_dssp CCC
T ss_pred eCC
Confidence 854
No 52
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=93.29 E-value=0.13 Score=35.70 Aligned_cols=79 Identities=9% Similarity=0.115 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHhhcccCCC--EEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHH
Q 031168 13 FSACSKKALQWAADNVVRNGD--HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNT 90 (164)
Q Consensus 13 ~s~~~~~~l~~a~~la~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (164)
.++.+..+++.|.+|... +. +|+++.+-+.. ..+.+++
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~---------------------------------------a~~~lr~ 74 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ---------------------------------------AAETLRT 74 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG---------------------------------------GHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh---------------------------------------HHHHHHH
Confidence 456788999999999866 65 89988776421 2222333
Q ss_pred HHHhcCceEEEEEe------eC-C---hhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 91 VARQKQIVVVMKIF------WG-D---PREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 91 ~~~~~~~~~~~~~~------~g-~---~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
.+ ..|..--.++. .+ + .+..|.+.+++.++|+|++|.....
T Consensus 75 al-a~GaD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 75 AL-AMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp HH-HHTCSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred HH-hcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 22 23665444333 12 2 2456777777788999999987543
No 53
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=92.87 E-value=0.75 Score=31.59 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+...|++|.+++..+|..++- ++...+-+|..++........... ..
T Consensus 1 ~~~~MKvvvl~SGGkDSs~al~----~l~~~G~eV~~L~~~~~~~~~s~~-------------~h--------------- 48 (237)
T 3rjz_A 1 MVGLADVAVLYSGGKDSNYALY----WAIKNRFSVKFLVTMVSENEESYM-------------YH--------------- 48 (237)
T ss_dssp --CCSEEEEECCSSHHHHHHHH----HHHHTTCEEEEEEEEECC------------------------------------
T ss_pred CCCCCEEEEEecCcHHHHHHHH----HHHHcCCeEEEEEEEcCCCCCccc-------------cC---------------
Confidence 5555689999999988875544 444566788877654332110000 00
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCC---hhHHHHHHhhhcCCcEEEEeecC
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGD---PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~I~~~a~~~~~dliVig~~~ 130 (164)
..-.+.++..++..|++....-..|. ..+.+.+..++.+++.+|.|.--
T Consensus 49 -~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 49 -TINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp -CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC---
T ss_pred -CccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcc
Confidence 01122344456667888766655553 45667777777789999998763
No 54
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=92.55 E-value=1.8 Score=30.01 Aligned_cols=77 Identities=10% Similarity=0.080 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHhhcccCCC--EEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHH
Q 031168 15 ACSKKALQWAADNVVRNGD--HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVA 92 (164)
Q Consensus 15 ~~~~~~l~~a~~la~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (164)
+.+..+++.|.+|... +. +|+++.+-+.. ..+.+++.+
T Consensus 40 p~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~---------------------------------------a~~~lr~al 79 (255)
T 1efv_B 40 PFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ---------------------------------------CQETIRTAL 79 (255)
T ss_dssp HHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT---------------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEeCChh---------------------------------------HHHHHHHHH
Confidence 5677899999999766 65 89988777422 222333332
Q ss_pred HhcCceEEEEEe------eC-C---hhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 93 RQKQIVVVMKIF------WG-D---PREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 93 ~~~~~~~~~~~~------~g-~---~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
..|.+--.++. .+ + .+..|.+.+++.++|+|++|.....
T Consensus 80 -a~GaD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 80 -AMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp -HHTCSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred -hcCCCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 23766444443 13 2 2456777787888999999987543
No 55
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=92.55 E-value=0.24 Score=33.40 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=32.7
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
|+..++|++++.++-.+..+++....|.+. +.+++++--
T Consensus 1 m~~~k~IllgvTGaiaa~k~~~ll~~L~~~-g~eV~vv~T 39 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQYGLRLLDCLVQE-EREVHFLIS 39 (209)
T ss_dssp CCSCSEEEEEECSSSCHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 888899999999999999998888888754 778877743
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=92.29 E-value=1.1 Score=31.01 Aligned_cols=40 Identities=5% Similarity=-0.145 Sum_probs=31.4
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
+.+|+|++++..+|..++..+..+... +..+.++|+....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 468999999999999888888877654 4578888886543
No 57
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=91.98 E-value=1.8 Score=28.75 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=28.1
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
..++|+|++++..+|..++..+.+. +.+++.+|+...
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 4578999999999988777666553 357888888754
No 58
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=91.86 E-value=0.82 Score=34.85 Aligned_cols=131 Identities=9% Similarity=-0.006 Sum_probs=74.9
Q ss_pred CceEEEEe--CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 4 TRRVGVAV--DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 4 ~~~ILv~~--d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.+.+|+=+ |.--....+|..|++. +.++..|++.++....... ........ .+ ..-.
T Consensus 5 ~~~~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~-----------~~~~~~~~---~r---~~Fl 63 (489)
T 1np7_A 5 PPTVLVWFRNDLRLHDHEPLHRALKS----GLAITAVYCYDPRQFAQTH-----------QGFAKTGP---WR---SNFL 63 (489)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHT----TSEEEEEEEECGGGGSBCT-----------TSCBSSCH---HH---HHHH
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHhc----CCCEEEEEEECchhhcccc-----------cccCCCCH---HH---HHHH
Confidence 34555555 4444566778877653 3478899998864221000 00000000 00 0123
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
-+.++.+++.+++.|+... +..|++.+.|.+.+++.+++.|+.... ........-. ...+.+....+++..+..
T Consensus 64 ~~sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~rd~-~v~~~l~~~gi~~~~~~~ 137 (489)
T 1np7_A 64 QQSVQNLAESLQKVGNKLL--VTTGLPEQVIPQIAKQINAKTIYYHRE-VTQEELDVER-NLVKQLTILGIEAKGYWG 137 (489)
T ss_dssp HHHHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHHHHHH-HHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHCCCcEE--EEECCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHHHH-HHHHHHHhcCCeEEEecC
Confidence 4567777777877787654 567999999999999999999988754 2332222212 223344445677766544
No 59
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=91.52 E-value=0.24 Score=37.97 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHh
Q 031168 15 ACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQ 94 (164)
Q Consensus 15 ~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
-....+|.+|++.|...+.+|.+|+|.++..... ... .. ...-.-+.++.+.+.+++
T Consensus 50 l~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~-----------------~~~---~~---r~~FL~~sL~dL~~~L~~ 106 (506)
T 3umv_A 50 LADNWALLHAAGLAAASASPLAVAFALFPRPFLL-----------------SAR---RR---QLGFLLRGLRRLAADAAA 106 (506)
T ss_dssp STTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG-----------------GCC---HH---HHHHHHHHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc-----------------CCC---HH---HHHHHHHHHHHHHHHHHH
Confidence 3456789999988877778899999998652100 000 00 001234567777777777
Q ss_pred cCceEEEEEeeCChhHHHHHHhhhcCCcEEEE
Q 031168 95 KQIVVVMKIFWGDPREKICEAIDKIPLSCLVI 126 (164)
Q Consensus 95 ~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVi 126 (164)
.|+.. .++.|++.+. .+.+++.+++.|+.
T Consensus 107 lG~~L--~v~~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 107 RHLPF--FLFTGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp TTCCE--EEESSCTTHH-HHHHHHTTCSEEEE
T ss_pred cCCce--EEEecChHHH-HHHHHhcCCCEEEe
Confidence 77664 4678999999 99999999999997
No 60
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=91.37 E-value=2.3 Score=28.64 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=51.9
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
|+||.|-++++..+..++-.+..- ...+++|.++....+.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~~~--------------------------------------- 41 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDKPG--------------------------------------- 41 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESCSS---------------------------------------
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECCCC---------------------------------------
Confidence 478999999988776666655532 2345666655432111
Q ss_pred HHHHHHHHHHhcCceEEEEEee--CCh---hHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliVig~~ 129 (164)
....+.+++.|+++...-.. .+. .+++++..++.++|++|+...
T Consensus 42 --a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy 90 (211)
T 3p9x_A 42 --AKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGY 90 (211)
T ss_dssp --SHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSC
T ss_pred --cHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCc
Confidence 13556677778886542211 121 357888888889999998665
No 61
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=91.22 E-value=1.9 Score=31.66 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=60.1
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+|++++..+|..++..+.+ .+.+|+.+|+........ ... -...+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~----------------~~~-----------c~~~~ 57 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTDE----------------NGV-----------CTATE 57 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC-------------------------------CHHHH
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCcccc----------------ccc-----------CCCHH
Confidence 45899999999988766655543 367899998865321000 000 00123
Q ss_pred HHHHHHHHHHhcCceEEEEEee-----------------C---C---------hhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-----------------G---D---------PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-----------------g---~---------~~~~I~~~a~~~~~dliVig~~ 129 (164)
-.+.++..++..|+++...-.. | + -...+.+.|++.++|.|+.|.+
T Consensus 58 d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~ 132 (376)
T 2hma_A 58 DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHY 132 (376)
T ss_dssp HHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCS
T ss_pred HHHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcc
Confidence 4566777777778876654322 1 0 0245678889999999999986
No 62
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=91.17 E-value=2.4 Score=28.49 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=27.6
Q ss_pred HHHHhcCceEEEEEee--CCh---hHHHHHHhhhcCCcEEEEeec
Q 031168 90 TVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliVig~~ 129 (164)
+.+++.|+++...-.. .+. .+++.+..++.++|++|+...
T Consensus 51 ~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy 95 (209)
T 4ds3_A 51 AKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGY 95 (209)
T ss_dssp HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSC
T ss_pred HHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 5577788886643221 121 367888899999999999765
No 63
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=90.07 E-value=4.2 Score=31.08 Aligned_cols=86 Identities=20% Similarity=0.093 Sum_probs=56.2
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++++|++++..+|..++..+.+. +.+++++|+...... ..-
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~-----------------------------------~~e 250 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLR-----------------------------------LGE 250 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSC-----------------------------------TTH
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCC-----------------------------------hHH
Confidence 68999999999888777666554 678999998653210 112
Q ss_pred HHHHHHHHHhcCceEEEEEee--------C--Chh-----------HHHHHHhhhc-CCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFW--------G--DPR-----------EKICEAIDKI-PLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--------g--~~~-----------~~I~~~a~~~-~~dliVig~~ 129 (164)
.+.+.+.+++.|+++...-.. | ++. ..+.+.|++. +++.|+.|.+
T Consensus 251 ~~~v~~~~~~lgi~~~vv~~~~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~ 317 (503)
T 2ywb_A 251 REEVEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTL 317 (503)
T ss_dssp HHHHHHHHHHTTCCEEEEECHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCC
T ss_pred HHHHHHHHHHhCCCEEEEECcHHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 445566666677776554321 1 221 2344567777 8999999985
No 64
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=89.84 E-value=0.96 Score=26.45 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=35.7
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCc----cceecccchhHHHhhcCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGK----LKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~----~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.|.+++++++++.||+|-+.... -.....-..++.|-.. +.||..+..+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCC
Confidence 446889999999999999999653211 1111223456667666 8999988654
No 65
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=89.76 E-value=2.2 Score=30.37 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=59.9
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhccc------------------CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVR------------------NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAE 66 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~------------------~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (164)
.+|+|++++..+|..++..+...... .+..+.++|+.....+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------------------- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------------------- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC--------------------
Confidence 47999999999998888777665311 1346888888754321
Q ss_pred CccchhhhhhcCCCCchHHHHHHHHHHhcCceEEEEEee----CChhHHHHHHhhh-cCCcEEEEeecCCC
Q 031168 67 FSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW----GDPREKICEAIDK-IPLSCLVIGNRGLG 132 (164)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~I~~~a~~-~~~dliVig~~~~~ 132 (164)
.+..+-+.+.++..|+++...... ....+.+.++.+. -..+.|++|.+...
T Consensus 114 ---------------pet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 114 ---------------PTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp ---------------HHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred ---------------HHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 445666666677778876443211 2344556666665 35788999988544
No 66
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=89.74 E-value=0.98 Score=34.81 Aligned_cols=88 Identities=20% Similarity=0.124 Sum_probs=55.6
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++++|++++..+|..++..+.+. .+.+++++|+..... ...+.
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~~----------------------------------~~~e~ 273 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGLL----------------------------------RLNEV 273 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSCS----------------------------------CTTHH
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCCC----------------------------------ChhHH
Confidence 68999999999888766665543 346799999865331 11233
Q ss_pred HHHHHHHHHhcCceEEEEEee--------C--Chh-----------HHHHHHhhhcCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFW--------G--DPR-----------EKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--------g--~~~-----------~~I~~~a~~~~~dliVig~~ 129 (164)
.+..+..++..|+++...-.. | ++. +.+.+.|++.+++.|+.|.+
T Consensus 274 ~~~~~~~a~~lgi~~~vv~~~~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~ 339 (527)
T 3tqi_A 274 DEVLNVFQKHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTI 339 (527)
T ss_dssp HHHHHHHTTSSCCEEEEECCHHHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCC
T ss_pred HHHHHHHHHHcCCcEEEEeChHHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEcccc
Confidence 333344677778776544221 1 221 12346788889999999984
No 67
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=89.70 E-value=1.1 Score=34.58 Aligned_cols=128 Identities=9% Similarity=0.038 Sum_probs=78.4
Q ss_pred eEEEEe--CCChhhHHHHHHHHhhccc--CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 6 RVGVAV--DFSACSKKALQWAADNVVR--NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 6 ~ILv~~--d~s~~~~~~l~~a~~la~~--~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.+|+=+ |.--....+|..|++.+.. .+.+|.++++.++..... .... .....-.
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~----------------~~~~------~~r~~Fl 87 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW----------------MQVG------ANRWRFL 87 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC----------------TTSC------HHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc----------------cCCC------HHHHHHH
Confidence 435555 4444567788888887755 567799999998653110 0000 0000123
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
-+.++.+++.+++.|+... +..|++.+.|.+.+++.+++.|+.... ..+..... -.-..+++....+++..+..
T Consensus 88 ~~sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~r-d~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 88 QQTLEDLDNQLRKLNSRLF--VVRGKPAEVFPRIFKSWRVEMLTFETD-IEPYSVTR-DAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp HHHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHHHH-HHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecC-cCHHHHHH-HHHHHHHHHHcCCEEEEecC
Confidence 4567777777777787654 467999999999999999999998754 22222111 12233445555677766554
No 68
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=89.27 E-value=3.7 Score=27.71 Aligned_cols=84 Identities=13% Similarity=-0.051 Sum_probs=51.2
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
++.||.|.++++.....++-.+.. ...+++|.+ |+.....
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~--Vis~~~a------------------------------------ 50 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYPARVVA--VGVDREC------------------------------------ 50 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEE--EEESSCC------------------------------------
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEE--EEeCCch------------------------------------
Confidence 356899999999877666555442 234445544 4443310
Q ss_pred hHHHHHHHHHHhcCceEEEEEee--CC---hhHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW--GD---PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dliVig~~~ 130 (164)
...+.+++.|+++...-.. .+ ..+++.+..++.++|++|+....
T Consensus 51 ----~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 51 ----RAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp ----HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred ----HHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 1245677778886553211 11 13568888888999999997653
No 69
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=89.10 E-value=3.7 Score=30.52 Aligned_cols=35 Identities=17% Similarity=-0.011 Sum_probs=27.5
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
-.+++|++++..+|..++..+.. .+.+++++|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 46899999999888866666554 367899999875
No 70
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=89.10 E-value=3.2 Score=30.77 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=27.9
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
++|+|++++..+|..++.++.+. ++.+++++|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 47999999999988777776543 3578889988753
No 71
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=88.83 E-value=1 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCceEEEEeCCChhhH-HHHHHHHhhcccCCCEEEEEE
Q 031168 3 GTRRVGVAVDFSACSK-KALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~-~~l~~a~~la~~~~~~l~~l~ 39 (164)
..+||++++.++..+. .+++....|.+ .+.+++++-
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~ 42 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFV 42 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEE
Confidence 4579999999998777 78888877764 477777663
No 72
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=88.41 E-value=1.1 Score=34.54 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=63.7
Q ss_pred CCCCceEEEEe--CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 1 MDGTRRVGVAV--DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 1 m~~~~~ILv~~--d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|++.+.+||=+ |.--....+|..|+. .+.+|..|+|.++...... .+........... .+ .
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~-------~~~~~~g~~~~g~---~r---~ 63 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESD-------PSAFSPGSSRAGV---NR---I 63 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCC-------TTSSSSBCSSCBH---HH---H
T ss_pred CCCCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhccc-------ccccccccccCCH---HH---H
Confidence 55555566655 444456677877765 3468999999875421100 0000000000000 00 0
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.-.-+.++.+++.+++.|... .++.|++.+.|.+.+++.+++.|+....
T Consensus 64 ~Fl~~sL~~L~~~L~~~G~~L--~v~~G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 64 RFLLESLKDLDSSLKKLGSRL--LVFKGEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--EEEESCHHHHHHHHHTTSCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHcCCce--EEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 123456777777777777654 4667999999999999999999998654
No 73
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.04 E-value=5.4 Score=30.05 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChh---HHHHHHhhhcCCcEEEEeecCCCcc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPR---EKICEAIDKIPLSCLVIGNRGLGKL 134 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dliVig~~~~~~~ 134 (164)
..+.+..+....++++.......++. ...++.++..++|+|++...++...
T Consensus 143 a~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 143 AYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 45666666777777654322223443 3345566667789999988766543
No 74
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=87.98 E-value=1.6 Score=32.63 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-Ch---hHHHHHHhhhcCC-cEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-DP---REKICEAIDKIPL-SCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~~---~~~I~~~a~~~~~-dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.....++..|++++..+..- .. ...+.+.++..++ +.||.+....+. ...-+...+.+||+-||
T Consensus 280 ~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~--------Lpgvva~~t~~PVIgvP 351 (425)
T 2h31_A 280 HCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNG--------LGPVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCC--------HHHHHHHHCSSCEEECC
T ss_pred HHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccc--------hHhHHhccCCCCEEEee
Confidence 46777778888899999888764 22 4445555666677 577777765543 33446667899999999
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 75
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=87.81 E-value=3.1 Score=29.60 Aligned_cols=36 Identities=25% Similarity=0.119 Sum_probs=27.4
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
++++|++++..+|..++..+.+. .+.+++++|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCC
Confidence 68999999999888776666554 2457889988753
No 76
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=87.71 E-value=5 Score=27.56 Aligned_cols=35 Identities=6% Similarity=0.022 Sum_probs=26.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
.+|+|++++..+|..++..+..+. ..+.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 489999999999988887777765 35677777643
No 77
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=87.52 E-value=4.9 Score=27.06 Aligned_cols=36 Identities=19% Similarity=0.068 Sum_probs=28.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
+++++|++++.-+|..++.++.+.. .+++.+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEECC
Confidence 4799999999999987777766542 57888888653
No 78
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=87.37 E-value=4.8 Score=29.64 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=60.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+|++++..+|..++..+.+ .+.+|+.+|+....... ..... ...+
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~---------------------~~~~~------~s~~ 65 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEEDD---------------------GEEYC------TAAA 65 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCCS---------------------HHHHH------HHHH
T ss_pred CCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCcccc---------------------ccCCC------CCHH
Confidence 45899999999888766555443 46789999986422100 00000 0123
Q ss_pred HHHHHHHHHHhcCceEEEEEee-----------------C---Ch---------hHHHHHHhhh-cCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-----------------G---DP---------REKICEAIDK-IPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-----------------g---~~---------~~~I~~~a~~-~~~dliVig~~~ 130 (164)
-.+.++..++..|+++...-.. | ++ ...+.+.|.+ .++|.|+.|.+.
T Consensus 66 d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 66 DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp HHHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred HHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 4567777788888876654332 1 00 2455677887 899999999753
No 79
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=86.44 E-value=0.95 Score=29.70 Aligned_cols=37 Identities=5% Similarity=-0.082 Sum_probs=29.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
|++||++++.++..+..+.+....|.+. +.+++++--
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH-FDEVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT-SSCEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEc
Confidence 3589999999999988899988888654 778877753
No 80
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=85.86 E-value=6.1 Score=26.54 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=27.4
Q ss_pred HHHHHhcCceEEEEEeeC--C---hhHHHHHHhhhcCCcEEEEeec
Q 031168 89 NTVARQKQIVVVMKIFWG--D---PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g--~---~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+++.|+++...-... + -.+++.+..++.++|++|+...
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y 89 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGF 89 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCc
Confidence 566777898865421111 1 1367888888899999999655
No 81
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=85.72 E-value=9.4 Score=28.57 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=26.5
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
-+||+|++++.-++..++.++.+ .+.+|+.+++..
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~ 48 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANV 48 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEES
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEc
Confidence 46899999999888766666543 367899888864
No 82
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=85.63 E-value=4.5 Score=24.98 Aligned_cols=72 Identities=11% Similarity=-0.049 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC--CCcEEEE
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG--SCPVTVV 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~--~~pVlvv 157 (164)
--...+...++..|+++...-. .-+.+.+++.+.++++|+|.+......... .+..+.+.+-... .++|++=
T Consensus 18 iG~~~v~~~l~~~G~~Vi~lG~-~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 18 VGNKILDHAFTNAGFNVVNIGV-LSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE-EECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 3445667778888998764322 367899999999999999999876433222 2345555554432 3666654
No 83
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=85.29 E-value=6.6 Score=26.44 Aligned_cols=83 Identities=12% Similarity=-0.023 Sum_probs=50.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
..||.|-++++.....++-.+..-- .+++|.++ +...+- ..
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~V--is~~~~-----------------------------------a~ 45 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAV--ISNRAD-----------------------------------AY 45 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEE--EESCTT-----------------------------------CH
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEE--EeCCcc-----------------------------------hH
Confidence 3489999999887766665554322 44455444 332210 00
Q ss_pred HHHHHHHHHHhcCceEEEEEee--CC---hhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW--GD---PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.|+++...-.. .+ ..+++.+..++.++|++|+...
T Consensus 46 ----~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy 92 (215)
T 3tqr_A 46 ----GLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGF 92 (215)
T ss_dssp ----HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSC
T ss_pred ----HHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccc
Confidence 135566778886542211 11 1357888899999999999665
No 84
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=84.97 E-value=5.1 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=24.7
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
..+++|.+++ -+|.-+ +.++.+.|.+++.+|+.
T Consensus 179 ~~kvlvllSG-vDS~va----a~ll~~~G~~v~~v~~~ 211 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALA----IFLMMKRGVEVIPVYIG 211 (307)
T ss_dssp TCEEEEECSS-HHHHHH----HHHHHHBTCEEEEEEES
T ss_pred CCcEEEEEeC-CcHHHH----HHHHHhCCCeEEEEEEE
Confidence 3689999999 777533 33444568899999988
No 85
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=84.16 E-value=9.4 Score=28.60 Aligned_cols=38 Identities=8% Similarity=-0.048 Sum_probs=23.1
Q ss_pred ceEEEE-eCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 5 RRVGVA-VDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 5 ~~ILv~-~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
+.|++. ..++..+..+...|..++...+.++.++....
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 344443 23444456677788888765466777776654
No 86
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=83.95 E-value=0.92 Score=35.07 Aligned_cols=119 Identities=11% Similarity=0.042 Sum_probs=70.1
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHH
Q 031168 13 FSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVA 92 (164)
Q Consensus 13 ~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (164)
.--....+|..|++.+. .+.+|..|+|.++..... ..... .+ ..-..+.++.+++.+
T Consensus 14 LRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~----------------~~~~~---~r---~~Fl~~sL~~L~~~L 70 (538)
T 3tvs_A 14 LRLHDNPALLAALADKD-QGIALIPVFIFDGESAGT----------------KNVGY---NR---MRFLLDSLQDIDDQL 70 (538)
T ss_dssp CCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCS----------------TTCCH---HH---HHHHHHHHHHHHHHG
T ss_pred cchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhcc----------------CCCCH---HH---HHHHHHHHHHHHHHH
Confidence 33345567777776654 455899999998653210 00000 00 012245667777777
Q ss_pred Hhc---CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 93 RQK---QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 93 ~~~---~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
++. |.. ..++.|++.+.|.+.+++.+++.|+.... ........ -....+.+....+++..+.
T Consensus 71 ~~~~~~G~~--L~v~~G~~~~vl~~L~~~~~a~~V~~n~~-~~~~~~~R-D~~v~~~l~~~gi~~~~~~ 135 (538)
T 3tvs_A 71 QAATDGRGR--LLVFEGEPAYIFRRLHEQVRLHRICIEQD-CEPIWNER-DESIRSLCRELNIDFVEKV 135 (538)
T ss_dssp GGSCSSSSC--CEEEESCHHHHHHHHHHHHCEEEECEECC-CCGGGHHH-HHHHHHHHHHSSCCCCEEC
T ss_pred HHhhcCCCe--EEEEeCCHHHHHHHHHHHcCCCEEEEccC-CCHHHHHH-HHHHHHHHHhCCceEEEec
Confidence 766 665 44678999999999999999999987554 33322111 1223344555566665443
No 87
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=83.63 E-value=2.1 Score=28.21 Aligned_cols=34 Identities=6% Similarity=-0.056 Sum_probs=28.3
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
+||++++.++..+..+.+....|.+. +.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 89999999998888888888888654 77887774
No 88
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=83.25 E-value=9.5 Score=26.59 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
+.|.+..++.++|+|+.-......-.....+..+...++..+.|++..
T Consensus 138 ~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 138 DDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 456677888999999986443333333344556666666667776655
No 89
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=83.23 E-value=2.2 Score=27.80 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=28.1
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
.+||++++.++..+..+++....|.+ .+.+++++-
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~ 39 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKS-KFDEVNVIA 39 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEE
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 38999999999988888888777765 477777664
No 90
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=83.08 E-value=10 Score=26.94 Aligned_cols=84 Identities=8% Similarity=0.004 Sum_probs=50.8
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..+||.|-++++..+..++-.+..- ...+++|.++ +...+ .
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~V--isn~~----------------------------------~-- 144 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DELDCDIACV--ISNHQ----------------------------------D-- 144 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEE--EESSS----------------------------------T--
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEE--EECcH----------------------------------H--
Confidence 3568999998887776665555432 2345555544 33221 0
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-CC---hhHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-GD---PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~---~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+...+++.|+++...-.. .+ ..+++++..++.++|++|+....
T Consensus 145 -----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 -----LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp -----THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred -----HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 123466778886543111 11 23568889999999999997653
No 91
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=82.59 E-value=7.4 Score=24.87 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKL 134 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~ 134 (164)
++..+.++..+...+ +......| ...+++++.++|.+|.|.+..+.+
T Consensus 52 ~~R~~m~~~~~~~~~--v~V~~~~~----l~~~~~~~~~~~~~v~G~r~~~Df 98 (162)
T 4f3r_A 52 EERVNLIADVLTDER--VEVLPLTG----LLVDFAKTHQANFILRGLRAVSDF 98 (162)
T ss_dssp HHHHHHHHHHCCCTT--EEEEECCS----CHHHHHHHTTCCEEEEEECSHHHH
T ss_pred HHHHHHHHHhhCCCC--EEEEeccc----hHHHHHHHcCCCEEEECCCchhhh
Confidence 445556655554322 33333333 345777888999999997754433
No 92
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=82.37 E-value=5.2 Score=23.01 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKI 119 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~ 119 (164)
+..++.+....+..|+++.+....++....+.+..++.
T Consensus 87 qnrleefsrevrrrgfevrtvtspddfkkslerlirev 124 (134)
T 2l69_A 87 QNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHh
Confidence 66778888888888888877555456666666666553
No 93
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.10 E-value=11 Score=28.23 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChh---HHHHHHhhhcCCcEEEEeecCCCc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPR---EKICEAIDKIPLSCLVIGNRGLGK 133 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dliVig~~~~~~ 133 (164)
..+.+..+....|+++.......++. ...++.+...++|+|++...++..
T Consensus 140 a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 140 AYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 34556666666676644322222443 234455665678999999887655
No 94
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=81.57 E-value=6.1 Score=28.33 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHhcCceEEEEEeeCCh-hHHHHHHhhhcCCcEEEEeecC
Q 031168 87 IVNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliVig~~~ 130 (164)
.+++.+.+.|+++.. ..+. .+++.+..++.++|++|+...+
T Consensus 54 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQ---PENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHHTTCCEEC---CSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHHcCCCEEc---cCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 466777888998632 1221 3578888889999999997653
No 95
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=81.22 E-value=1.9 Score=28.61 Aligned_cols=36 Identities=8% Similarity=-0.100 Sum_probs=29.1
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
..++|++++.++..+..+.+....|.+ .+.+|+++-
T Consensus 7 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 42 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVM 42 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 357999999999988888888888854 577887764
No 96
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=80.43 E-value=6.8 Score=28.08 Aligned_cols=73 Identities=12% Similarity=-0.011 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHh-hcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
.+..+.+...+++.|+++....... ..+..+.+.+...++|+||+... -+.+ ..+++.+. .....|+.++|-
T Consensus 41 ~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG-DGTv-----~~v~~~l~~~~~~~pl~iIP~ 114 (337)
T 2qv7_A 41 KRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG-DGTL-----NEVVNGIAEKPNRPKLGVIPM 114 (337)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HHHH-----HHHHHHHTTCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC-chHH-----HHHHHHHHhCCCCCcEEEecC
Confidence 4566788888888898877765444 45556666665567888777533 2322 23455554 245789999986
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 115 G 115 (337)
T 2qv7_A 115 G 115 (337)
T ss_dssp S
T ss_pred C
Confidence 4
No 97
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=80.41 E-value=6.5 Score=22.83 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
...+.+...+...|..+.. ..+. ++.++..+..++|+|++...-.+. .. -.....+-...++|++++-.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~---~~~~-~~al~~~~~~~~dlii~D~~~p~~-~g---~~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 13 PIADILEFNLRKEGYEVHC---AHDG-NEAVEMVEELQPDLILLDIMLPNK-DG---VEVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESSH-HHHHHHHHTTCCSEEEEETTSTTT-HH---HHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHhCCEEEEE---eCCH-HHHHHHHhhCCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCCCEEEEEC
Confidence 3555666677777776432 3343 445556667789999998763321 11 12344454556789888754
No 98
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=80.11 E-value=6.6 Score=22.72 Aligned_cols=69 Identities=9% Similarity=0.041 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv 157 (164)
....+.+...+...|..+. ...+. .+.++..+...+|++++...-.+.... -...+.+-.. ..+|++++
T Consensus 15 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~~~~~~~dlvi~d~~~~~~~~g---~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 15 TALSATLRSALEGRGFTVD---ETTDG-KGSVEQIRRDRPDLVVLAVDLSAGQNG---YLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHHHHTCEEE---EECCH-HHHHHHHHHHCCSEEEEESBCGGGCBH---HHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHHHHhcCceEE---EecCH-HHHHHHHHhcCCCEEEEeCCCCCCCCH---HHHHHHHhcCccccCCCEEEE
Confidence 3455666677776777653 22333 444455566679999998763211111 1244445443 46899888
No 99
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=79.99 E-value=11 Score=25.19 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=49.5
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
+||.|-++++..+..++-.+.. ....+.+|.++...++.. .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~~~~I~~Vvs~~~~~------------------------------------~-- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNSSAQIDIVISNKAAV------------------------------------A-- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTCSCEEEEEEESSTTC------------------------------------H--
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCCCcEEEEEEeCCCCh------------------------------------H--
Confidence 4789999999877666654432 122345555554332211 0
Q ss_pred HHHHHHHHHhcCceEEEEEee--CCh---hHHHHHHhhhcCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.|+++...-.. .+. .+++.+..++.++|++|+...
T Consensus 42 ---~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y 88 (209)
T 1meo_A 42 ---GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGF 88 (209)
T ss_dssp ---HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred ---HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcch
Confidence 135667788886542211 121 256788888889999998765
No 100
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=79.95 E-value=12 Score=25.73 Aligned_cols=72 Identities=18% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 158 (164)
-+..+...++..|+++...-. .-+.+.+++.++++++|+|.+......... .+..+.+.+-.. ..+||++--
T Consensus 139 G~~iva~~L~~~G~~Vi~LG~-~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~--~~~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 139 GKNIVTALLRANGYNVVDLGR-DVPAEEVLAAVQKEKPIMLTGTALMTTTMY--AFKEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEEE-ECCSHHHHHHHHHHCCSEEEEECCCTTTTT--HHHHHHHHHHTTTCCCCEEEES
T ss_pred HHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEEeeccCCHH--HHHHHHHHHHhcCCCCcEEEEC
Confidence 455666777888998765433 268999999999999999999875333222 123344444332 347877753
No 101
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=79.59 E-value=2.2 Score=25.35 Aligned_cols=65 Identities=5% Similarity=-0.010 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+.+++++.+++.|++++.....-+. +.+... ++|+|++|..-+-.+. -..+......+||.+++.
T Consensus 22 lv~km~~~a~~~gi~v~i~a~~~~~---~~~~~~--~~DvvLLgPQV~y~~~------~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 22 LANAINEGANLTEVRVIANSGAYGA---HYDIMG--VYDLIILAPQVRSYYR------EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEETTS---CTTTGG--GCSEEEECGGGGGGHH------HHHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHHHCCCceEEEEcchHH---HHhhcc--CCCEEEEChHHHHHHH------HHHHHhhhcCCcEEEeCH
Confidence 5577778888889988775532222 122223 3799999976332222 234455566899998874
No 102
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=79.57 E-value=6 Score=25.17 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC--CCcEEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG--SCPVTVV 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~--~~pVlvv 157 (164)
-+..+...++..|+++...- ...+.+.+++.+.++++|+|.+......... .+..+.+.+-... .++|++=
T Consensus 34 G~~~va~~l~~~G~eVi~lG-~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~--~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 34 GAKVVARALRDAGFEVVYTG-LRQTPEQVAMAAVQEDVDVIGVSILNGAHLH--LMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHHHHHHTTCEEECCC-SBCCHHHHHHHHHHTTCSEEEEEESSSCHHH--HHHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHhcCCCEEEEEeechhhHH--HHHHHHHHHHhcCCCCCEEEEe
Confidence 44566677777888765321 1257899999999999999999876433222 2234444443332 3677654
No 103
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=79.46 E-value=2.8 Score=31.55 Aligned_cols=116 Identities=12% Similarity=0.152 Sum_probs=68.7
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCC-CccchhhhhhcCCCCchHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAE-FSEPTIMKKYGAKPDPETLDIVNT 90 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 90 (164)
|.--....+|..|++. +.+|.+++|.++..... .. .. . ....-.-+.++.+++
T Consensus 10 DLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~----------------~~~~~---~---~r~~Fl~~sL~~L~~ 63 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----CDRVIPVFIADPRQLIN----------------NPYKS---E---FAVSFMINSLLELDD 63 (440)
T ss_dssp CCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSS----------------CTTCC---H---HHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhc----CCCEEEEEEeChhhhcc----------------CCcCC---H---HHHHHHHHHHHHHHH
Confidence 3333455677777763 45899999987542100 00 00 0 000123456777777
Q ss_pred HHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 91 VARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+++.|+... +..|++.+.|.+.++ +++.|+.... ........- ....+.+....+++..+..
T Consensus 64 ~L~~~G~~L~--v~~g~~~~~l~~l~~--~~~~v~~~~~-~~~~~~~rd-~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 64 ELRKKGSRLN--VFFGEAEKVVSRFFN--KVDAIYVNED-YTPFSISRD-EKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp HHHTTTCCCE--EEESCHHHHHHHHCT--TCSEEEEECC-CSHHHHHHH-HHHHHHHHTTTCEEEEECC
T ss_pred HHHHcCCeEE--EEECCHHHHHHHHHc--CCCEEEEecc-cChHHHHHH-HHHHHHHHHcCceEEEecC
Confidence 7777777654 467999999999999 8999988654 232222221 2333445555778776654
No 104
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=79.18 E-value=1.3 Score=28.04 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=33.9
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCc-cceec---ccchhHHHhhcCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGK-LKRAI---MGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~-~~~~~---~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.|.+.+++++++.||+|.+-... ..... .-.++..+....++||..+..+
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr 99 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDER 99 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCC
Confidence 567889999999999999999652211 11100 1123344555558999887654
No 105
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=79.13 E-value=1.7 Score=27.16 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=34.1
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCC-ccce---ecccchhHHHhhcCCCcEEEEcC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLG-KLKR---AIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~-~~~~---~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
...+.|.+.+++++++.||+|-+... ...+ ......++.|-...+.||..+..
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DE 96 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDE 96 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 34788999999999999999976321 1111 11124455555555789988753
No 106
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=78.66 E-value=15 Score=25.91 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=49.8
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.+||.|-++++..+..++-.+..- ...+++|.++ +...+ .
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~V--isn~~----------------------------------~--- 129 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAV--VSNHP----------------------------------D--- 129 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEE--EESSS----------------------------------T---
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEE--EeCcH----------------------------------H---
Confidence 468999998887776666555432 2344555544 33321 0
Q ss_pred HHHHHHHHHHhcCceEEEEEee-CC---hhHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-GD---PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-g~---~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+...+++.|+++...-.. .+ -.+++++..++.++|++|+....
T Consensus 130 ----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 130 ----LEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ----THHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 112366778886643211 12 13468888889999999997653
No 107
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=78.38 E-value=19 Score=26.96 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHHhcCceEEEEEeeCChh---HHHHHHhhhcCCcEEEEeecCCCc
Q 031168 90 TVARQKQIVVVMKIFWGDPR---EKICEAIDKIPLSCLVIGNRGLGK 133 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dliVig~~~~~~ 133 (164)
......|+++-..-...++. ...++.++..++|+|++...++..
T Consensus 147 ~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 147 LLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQ 193 (425)
T ss_dssp HHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred HhcccCCccEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccc
Confidence 33444566643321112343 234455555678999998876543
No 108
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=78.32 E-value=6.7 Score=28.55 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCCh----hHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDP----REKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+.+.+.|+++...+..|.+ .+.+.+.+++.++|+|| +|...- ++.+..+......|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv--------~D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKT--------LDTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH--------HHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHH--------HHHHHHHHHhcCCCEEEec
Confidence 4667777777778887554555643 45667778888999888 554311 3344444444578888888
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
-.
T Consensus 118 TT 119 (370)
T 1jq5_A 118 TA 119 (370)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 109
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=78.15 E-value=16 Score=25.89 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=51.4
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..+||.|.++++..+..++-.+..- ...+++|.++ +...+ .
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~V--isn~~----------------------------------~-- 134 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGI--VSNHP----------------------------------D-- 134 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEE--EESSS----------------------------------T--
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEE--EeCcH----------------------------------H--
Confidence 3568999999888776666665443 2345555544 43321 0
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-CCh---hHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-GDP---REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~~---~~~I~~~a~~~~~dliVig~~~ 130 (164)
. ...+++.|+++...-.. .+- .+++++..+++++|++|+....
T Consensus 135 -~----~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 135 -F----APLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp -T----HHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred -H----HHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 1 12366778886643211 121 3468888899999999997653
No 110
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=78.01 E-value=1.6 Score=33.07 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=56.8
Q ss_pred hhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhc
Q 031168 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (164)
Q Consensus 16 ~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
....+|.+|++. ..+ +|..++|.++..... .... .....-.-+.++.+++.+++.
T Consensus 14 ~DN~aL~~A~~~--~~~-~v~~vfi~dp~~~~~----------------~~~~------~~r~~fl~~sL~~L~~~L~~~ 68 (471)
T 1dnp_A 14 HDNLALAAACRN--SSA-RVLALYIATPRQWAT----------------HNMS------PRQAELINAQLNGLQIALAEK 68 (471)
T ss_dssp TTCHHHHHHSSS--TTS-EEEEEEEECHHHHHH----------------TTCC------HHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHhC--CCC-CEEEEEEECchhhcc----------------CCCC------HHHHHHHHHHHHHHHHHHHHC
Confidence 345577777653 123 899999987542100 0000 000012345677777778778
Q ss_pred CceEEEEEe--eCChhHHHHHHhhhcCCcEEEEeec
Q 031168 96 QIVVVMKIF--WGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 96 ~~~~~~~~~--~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
|+....... .|++.+.|.+.+++.+++.|+....
T Consensus 69 G~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 69 GIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 887655322 6899999999999999999998654
No 111
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=77.55 E-value=7.6 Score=24.50 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
+++.+.+.+.+.+.|++++..-.... ....+.....+ +|.||+|.+...
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~ 68 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGR--CTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHT--EEEEEEECCBTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHh--CCEEEEEcCcCC
Confidence 66777777777778887766544444 45555554444 699999998654
No 112
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=77.46 E-value=9 Score=28.53 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=67.3
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
|.--....+|..|++.+ +|..+++.++... .. . ..+ ..-.-+.++.+++.
T Consensus 11 DlRl~Dn~aL~~A~~~~-----~v~~vfi~d~~~~------------------~~-~---~~r---~~fl~~sL~~l~~~ 60 (420)
T 2j07_A 11 DLRLHDHPALLEALARG-----PVVGLVVLDPNNL------------------KT-T---PRR---RAWFLENVRALREA 60 (420)
T ss_dssp CCCSTTCHHHHHHHTTS-----CEEEEEEECHHHH------------------SS-C---HHH---HHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHhCC-----CEEEEEEECCccc------------------cC-C---HHH---HHHHHHHHHHHHHH
Confidence 33334566777776532 7889998875410 00 0 000 01234567777777
Q ss_pred HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+++.|+... +..|++.+.|.+.+++.+++.|+.... ..+.....- ..|...+.+++..+..
T Consensus 61 L~~~g~~l~--~~~g~~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~rd----~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 61 YRARGGALW--VLEGLPWEKVPEAARRLKAKAVYALTS-HTPYGRYRD----GRVREALPVPLHLLPA 121 (420)
T ss_dssp HHHTTCCEE--EEESCHHHHHHHHHHHTTCSEEEEECC-CSHHHHHHH----HHHHHHCSSCEEEECC
T ss_pred HHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecc-cChhHHHHH----HHHHHHcCCeEEEeCC
Confidence 777787654 567999999999999999999998654 232222211 2233333777776654
No 113
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=77.31 E-value=5.6 Score=26.36 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC---CCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG---SCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~---~~pVlvv~ 158 (164)
--+..+...++..|+++...- ..-+.+.+++.+++.++|+|.+......... .+..+.+.+-... .+||++--
T Consensus 103 iG~~~va~~l~~~G~~v~~LG-~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 103 IGKNLVAMMLESGGFTVYNLG-VDIEPGKFVEAVKKYQPDIVGMSALLTTTMM--NMKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHHHHHHHHTTCEEEECC-SSBCHHHHHHHHHHHCCSEEEEECCSGGGTH--HHHHHHHHHHHTTCGGGCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHH--HHHHHHHHHHhcCCCCCCeEEEEC
Confidence 344566677777788765421 2367899999999999999999875322211 1233444443332 27777653
No 114
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=77.28 E-value=3.6 Score=23.69 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
++.+.+++......|+.+.+.-......+.|.+..+.+++.++|+--..
T Consensus 12 eetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvdd 60 (134)
T 2l69_A 12 EETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred HHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 6678888888888888877643333556778888888888888776554
No 115
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=77.25 E-value=2.9 Score=28.71 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=33.8
Q ss_pred HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 112 ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 112 I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+++.+++.++|++|+.++....-. ..-++.++.....|.+++.+.+
T Consensus 56 ~~~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 56 ALDIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSSSCEEEEEEGG
T ss_pred hhhhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCCCCEEEEcCCc
Confidence 445568999999999887543211 3567789999999999986543
No 116
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=77.21 E-value=17 Score=25.97 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=38.5
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC---CccceecccchhHH-HhhcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL---GKLKRAIMGSVSNY-VVNNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~---~~~~~~~~gs~~~~-l~~~~~~pVlvv~~ 159 (164)
+...+.+.|++++.. ..+....+++ ++|.|++|...- +..-.. .|+-.-. +.++..+|++++-+
T Consensus 164 la~~L~~~gI~vtli--~Dsa~~~~m~-----~vd~VivGAd~i~~nG~v~nk-iGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 164 MAKALCHLNVPVTVV--LDAAVGYIME-----KADLVIVGAEGVVENGGIINK-IGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp HHHHHHTTTCCEEEE--CGGGHHHHGG-----GCSEEEEECSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHcCCCEEEE--ehhHHHHHHH-----hCCEEEECceEEecCCCeeeh-hhhHHHHHHHHHhCCCEEEEec
Confidence 355566779988753 2333333433 589999999752 222222 4554444 44567899999843
No 117
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=76.79 E-value=13 Score=24.40 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHH--HHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKIC--EAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~--~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.++.+.+.+.+.+.+.+++ +..++..+.+. +.. ..++|.||- + |.++..|-++.+.||+-++.
T Consensus 14 ~~l~~~~~~i~~e~~~~i~--i~~~~l~~~v~~a~~~-~~~~dVIIS-R-----------Ggta~~lr~~~~iPVV~I~~ 78 (196)
T 2q5c_A 14 ENLLNLFPKLALEKNFIPI--TKTASLTRASKIAFGL-QDEVDAIIS-R-----------GATSDYIKKSVSIPSISIKV 78 (196)
T ss_dssp HHHHHHHHHHHHHHTCEEE--EEECCHHHHHHHHHHH-TTTCSEEEE-E-----------HHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHHhhhCCceE--EEECCHHHHHHHHHHh-cCCCeEEEE-C-----------ChHHHHHHHhCCCCEEEEcC
Confidence 3455566666666666444 55565443332 233 567885443 2 45677677778999998876
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 79 s 79 (196)
T 2q5c_A 79 T 79 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 118
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=76.43 E-value=8.7 Score=24.22 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
++..+.+.+.+.+.|++++..-........+.....+ +|.||+|.+...
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~ 63 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSS--ARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHH--CSEEEEECCBSS
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHh--CCEEEEEcCCcC
Confidence 5667777777777788876654444444555554444 599999998654
No 119
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=76.20 E-value=15 Score=25.83 Aligned_cols=73 Identities=8% Similarity=0.048 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~ 159 (164)
.+..+.+...+++.+++++...... ..+.++.+.+.+ ++|+||+... -+.+. .+++.+.. ...+|+.++|-
T Consensus 25 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GG-DGTl~-----~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 25 HTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGG-DGTVF-----ECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEEC-HHHHH-----HHHHHHTTCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEcc-chHHH-----HHHHHHhhCCCCCcEEEecC
Confidence 4566778888888899888766554 556667666544 6788777533 23222 34444444 25789999986
Q ss_pred CC
Q 031168 160 GI 161 (164)
Q Consensus 160 ~~ 161 (164)
..
T Consensus 98 Gt 99 (304)
T 3s40_A 98 GT 99 (304)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 120
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=75.92 E-value=15 Score=24.55 Aligned_cols=42 Identities=7% Similarity=0.035 Sum_probs=27.9
Q ss_pred HHHHHHhcCceEEEEEee--CCh---hHHHHHHhhhcCCcEEEEeec
Q 031168 88 VNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.|+++...-.. .+. .+++.+..++.++|++|+...
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y 91 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGY 91 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchh
Confidence 446677788886542111 121 347888888899999999755
No 121
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=74.86 E-value=12 Score=22.78 Aligned_cols=71 Identities=6% Similarity=0.017 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
....+.+...+...|..+. ...+. ++.++...+..+|+|++...-... ..+ .....+-.. ..+||+++-..
T Consensus 24 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 24 EVILQRLQQLLSPLPYTLH---FARDA-TQALQLLASREVDLVISAAHLPQM-DGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHHHHTTSSCEEE---EESSH-HHHHHHHHHSCCSEEEEESCCSSS-CHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHHHhcccCcEEE---EECCH-HHHHHHHHcCCCCEEEEeCCCCcC-cHH---HHHHHHHhHCCCCeEEEEECC
Confidence 4456677777777776543 22343 444455566789999998763321 111 233444433 46888888654
No 122
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=74.65 E-value=10 Score=22.12 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
....+.+...+...|..+.. ..+ .++.++..+..++|+|++...-... .. -.....+-.. ..+|++++...
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 17 QVFRSLLDSWFSSLGATTVL---AAD-GVDALELLGGFTPDLMICDIAMPRM-NG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESC-HHHHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHHHHHhCCceEEE---eCC-HHHHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 34556677777777776532 334 3445556677789999998763221 11 1234444443 35888888554
No 123
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=74.07 E-value=16 Score=26.13 Aligned_cols=72 Identities=14% Similarity=0.308 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 158 (164)
+..+.+.+.+++.|+++....... .....+.+.+...++|+||+... -+.+ ..+++.+.. ...+|+.++|
T Consensus 44 ~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG-DGTl-----~~v~~~l~~~~~~~~~plgiiP 117 (332)
T 2bon_A 44 LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG-DGTI-----NEVSTALIQCEGDDIPALGILP 117 (332)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES-HHHH-----HHHHHHHHHCCSSCCCEEEEEE
T ss_pred chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc-chHH-----HHHHHHHhhcccCCCCeEEEec
Confidence 345667778888888877665442 34455555544456887776433 2322 345565653 4578988888
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
-.
T Consensus 118 ~G 119 (332)
T 2bon_A 118 LG 119 (332)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 124
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=73.94 E-value=20 Score=25.01 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
++-++.+++.+++.|+.+-+.+..-...+.+.+ .+|++=+|+..-.... .-+++ ....+||++=+.
T Consensus 61 ~~GL~~l~~~~~e~Glp~~te~~d~~~~~~l~~-----~vd~~~IgA~~~rn~~------ll~~~-a~~~~PV~lK~G 126 (267)
T 2nwr_A 61 EYGVKALRKVKEEFGLKITTDIHESWQAEPVAE-----VADIIQIPAFLCRQTD------LLLAA-AKTGRAVNVKKG 126 (267)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSSGGGHHHHHT-----TCSEEEECGGGTTCHH------HHHHH-HTTTSEEEEECC
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCHHhHHHHHh-----cCCEEEECcccccCHH------HHHHH-HcCCCcEEEeCC
Confidence 456777888888899998887665444444433 3789999886544322 33444 366888877554
No 125
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=73.93 E-value=11 Score=22.28 Aligned_cols=71 Identities=10% Similarity=0.125 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 158 (164)
....+.+...+.+.|+.+. ...+ .++.++..+...+|+|++...-.. ...+ ...+.+-. ...+|++++.
T Consensus 16 ~~~~~~l~~~l~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 16 PDIARLLNLMLEKGGFDSD---MVHS-AAQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVS 87 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EECS-HHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCeEE---EECC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEe
Confidence 4456667777777777642 2233 344555666778999999876322 1111 23344443 3468888886
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 88 ~~ 89 (140)
T 3grc_A 88 AN 89 (140)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 126
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=73.68 E-value=8.8 Score=25.53 Aligned_cols=46 Identities=7% Similarity=-0.024 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+..+.+.+.+++.|+++...-......+.+.+..++ +|.|+++..
T Consensus 43 ~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~--ad~I~l~GG 88 (206)
T 3l4e_A 43 TFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK--NDFIYVTGG 88 (206)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH--SSEEEECCS
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh--CCEEEECCC
Confidence 4567778888888898755432222233444444454 699999763
No 127
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=73.59 E-value=12 Score=22.32 Aligned_cols=74 Identities=4% Similarity=-0.075 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
....+.+...+...|+.+. ...+..+.+....+...+|+|++...-......+ .....+-....+||+++....
T Consensus 15 ~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 15 KFQAKTIANILNKYGYTVE---IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCEEE---EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 3456667777777776543 2334555444444436799999987632111111 234444445678998886543
No 128
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=73.51 E-value=18 Score=24.47 Aligned_cols=41 Identities=7% Similarity=-0.009 Sum_probs=27.6
Q ss_pred HHHHHhcCceEEEEEeeC--C---hhHHHHHHhhhcCCcEEEEeec
Q 031168 89 NTVARQKQIVVVMKIFWG--D---PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g--~---~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+++.|+++...-... + ..+++++..++.++|++|+...
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy 110 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGY 110 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSC
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcCh
Confidence 456777888865421111 1 1367888888899999999755
No 129
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=72.78 E-value=11 Score=21.33 Aligned_cols=72 Identities=8% Similarity=0.030 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~ 158 (164)
....+.+...+...|..+.. ..+. ++..+......+|++++...-... .. -...+.+-.. ..+|++++-
T Consensus 11 ~~~~~~l~~~l~~~g~~v~~---~~~~-~~~~~~l~~~~~dlii~d~~~~~~-~~---~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 11 DEAATVVCEMLTAAGFKVIW---LVDG-STALDQLDLLQPIVILMAWPPPDQ-SC---LLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESCH-HHHHHHHHHHCCSEEEEECSTTCC-TH---HHHHHHHHHTCCCSSCCCEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEE---ecCH-HHHHHHHHhcCCCEEEEecCCCCC-CH---HHHHHHHHhccccCCCCEEEEe
Confidence 34556667777777775432 2333 444455566679999998763321 11 1234445444 468888875
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
...
T Consensus 83 ~~~ 85 (119)
T 2j48_A 83 GEP 85 (119)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 130
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=72.50 E-value=4.8 Score=28.49 Aligned_cols=105 Identities=5% Similarity=-0.098 Sum_probs=60.0
Q ss_pred eEEEEeCCChh---hHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 6 RVGVAVDFSAC---SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 6 ~ILv~~d~s~~---~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.-|+.+.+.+. ....+++.++++...+.+|.++ -.... ..+
T Consensus 27 g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~I--ptAs~----------------------------------~~~ 70 (291)
T 3en0_A 27 PAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGII--PSASR----------------------------------EPL 70 (291)
T ss_dssp CCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEE--CTTCS----------------------------------SHH
T ss_pred ceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEE--eCCCC----------------------------------ChH
Confidence 34556655542 3568999999997666666655 11110 002
Q ss_pred hHHHHHHHHHHhcCc-eEEEEEee---CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh
Q 031168 83 ETLDIVNTVARQKQI-VVVMKIFW---GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN 148 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~ 148 (164)
...+.+++.+++.|+ +++..... ....+.+.+..++ +|.|+++......+.+.+-++-..++++
T Consensus 71 ~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~--ad~I~v~GGnt~~l~~~l~~t~l~~~L~ 138 (291)
T 3en0_A 71 LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQ--CTGIFMTGGDQLRLCGLLADTPLMDRIR 138 (291)
T ss_dssp HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHH--CSEEEECCSCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhc--CCEEEECCCCHHHHHHHHHhCCHHHHHH
Confidence 344556667777788 55544332 1233556666665 7999998765444555554554444443
No 131
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=72.36 E-value=14 Score=25.05 Aligned_cols=37 Identities=19% Similarity=0.027 Sum_probs=22.4
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
|....+++++.|+... +.+..++...+..+..+++-.
T Consensus 9 m~~~~~lilAlD~~~~-----~~a~~~v~~~~~~v~~~Kvg~ 45 (228)
T 3m47_A 9 MDVMNRLILAMDLMNR-----DDALRVTGEVREYIDTVKIGY 45 (228)
T ss_dssp CCCGGGEEEECCCCSH-----HHHHHHHHTTTTTCSEEEEEH
T ss_pred hhcCCCeEEEeCCCCH-----HHHHHHHHHcCCcccEEEEcH
Confidence 4445689999999863 334444444454556666643
No 132
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=72.17 E-value=10 Score=26.72 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=22.1
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l 38 (164)
..+||.|-++++..+..++-.+..- ...+++|.++
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~V 121 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GELDMEVVGI 121 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEE
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CCCCeEEEEE
Confidence 3568999998888776666555432 2344555544
No 133
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=72.14 E-value=9.7 Score=22.37 Aligned_cols=66 Identities=8% Similarity=0.129 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
-..+++++.+.+.|++++.....-.-.+. .. .++|+|+.+..-..... -.+......++||.++++
T Consensus 19 ll~~kl~~~~~~~gi~~~i~~~~~~~~~~---~~--~~~D~Ii~t~~l~~~~~------~~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 19 MLVQRIEKYAKSKNINATIEAIAETRLSE---VV--DRFDVVLLAPQSRFNKK------RLEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECSTTHHH---HT--TTCSEEEECSCCSSHHH------HHHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHh---hc--CCCCEEEECCccHHHHH------HHHHHhcccCCCEEEECh
Confidence 35578888888889887654433222222 22 35899999865322111 112233334678877653
No 134
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=72.07 E-value=22 Score=24.63 Aligned_cols=73 Identities=16% Similarity=0.034 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++... .+++.....++|-||+......... ... +.+....+||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 18 QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLS-----NVV-KEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCH-----HHH-HHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HHH-HHHHHCCCeEEEECC
Confidence 66788888888888988776555455543 4566666778999999765433211 122 244567899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 92 ~ 92 (313)
T 3m9w_A 92 M 92 (313)
T ss_dssp C
T ss_pred c
Confidence 3
No 135
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=71.94 E-value=14 Score=22.42 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
....+.+...+...|+.+. ...+ .++.++......+|+|++...-... ... .....+-.. ..+||+++-.
T Consensus 13 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dliild~~l~~~-~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 13 RDLRKAMQQTLELAGFTVS---SFAS-ATEALAGLSADFAGIVISDIRMPGM-DGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESC-HHHHHHTCCTTCCSEEEEESCCSSS-CHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHcCcEEE---EECC-HHHHHHHHHhCCCCEEEEeCCCCCC-CHH---HHHHHHHhhCCCCCEEEEEC
Confidence 3355666677777777543 2233 4555566666789999998763321 111 234444443 4689888754
No 136
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.91 E-value=9.9 Score=25.47 Aligned_cols=71 Identities=10% Similarity=-0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEE--eecCCCccceecccchhHHHhhcC---CCcEEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVI--GNRGLGKLKRAIMGSVSNYVVNNG---SCPVTVV 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVi--g~~~~~~~~~~~~gs~~~~l~~~~---~~pVlvv 157 (164)
=+..+...++..|.++... =..-+.+.|++.++++++|+|.+ ...... .-..+..+.+.+-... .+||++=
T Consensus 108 G~~iv~~~l~~~G~~Vi~L-G~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~--~~~~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 108 GHRLVTTMLGANGFQIVDL-GVDVLNENVVEEAAKHKGEKVLLVGSALMTT--SMLGQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHHHHHTSCEEEEC-CSSCCHHHHHHHHHHTTTSCEEEEEECSSHH--HHTHHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEc-CCCCCHHHHHHHHHHcCCCEEEEEchhcccC--cHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 4455667778889876431 11367999999999999999999 443211 1112344555554443 4677664
No 137
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=71.59 E-value=13 Score=22.00 Aligned_cols=71 Identities=7% Similarity=0.054 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 158 (164)
....+.+...+...|+.+. .. ...++.++..+...+|+|++...-.. ... -...+.+-. ...+||+++-
T Consensus 17 ~~~~~~l~~~L~~~g~~v~---~~-~~~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~~s 88 (142)
T 3cg4_A 17 AHVRIAVKTILSDAGFHII---SA-DSGGQCIDLLKKGFSGVVLLDIMMPG-MDG---WDTIRAILDNSLEQGIAIVMLT 88 (142)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EE-SSHHHHHHHHHTCCCEEEEEESCCSS-SCH---HHHHHHHHHTTCCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHCCeEEE---Ee-CCHHHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhhcccCCCCEEEEE
Confidence 4456667777777776532 22 33445556666777999999876332 111 123444544 3468998885
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 89 ~~ 90 (142)
T 3cg4_A 89 AK 90 (142)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 138
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=71.49 E-value=5.2 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=27.1
Q ss_pred CCCceEEEEeCCChhhHH-HHHHHHhhcccCCCEEEEEE
Q 031168 2 DGTRRVGVAVDFSACSKK-ALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~-~l~~a~~la~~~~~~l~~l~ 39 (164)
..-|+|++++.++-.... +++....|.+ .+.+|+++-
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~ 40 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVV 40 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 356899999999976665 7777766654 477877764
No 139
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=71.33 E-value=22 Score=24.35 Aligned_cols=49 Identities=10% Similarity=-0.215 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh-----------hHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP-----------REKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
..+.+.+.+.+.+.|++++..-+..-+ ...+.+...+ +|.||++++-..
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~--AD~iI~~sP~Yn 110 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIW--SEGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHH--CSEEEEEEECSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHH--CCEEEEEeCCCC
Confidence 456666777777778877665443322 4566666666 799999998654
No 140
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=70.90 E-value=14 Score=28.00 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=70.6
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
|.--....+|..|++.+ .+|..+++.++..... .... .. ...-.-+.++.+++.
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~----------------~~~~---~~---r~~fl~~sL~~L~~~ 65 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQS----------------ADMA---PA---RVAYLQGCLQELQQR 65 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTC----------------TTCC---HH---HHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcC----------------CCCC---HH---HHHHHHHHHHHHHHH
Confidence 33344566787777643 2688999987542100 0000 00 001234567777777
Q ss_pred HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+++.|+... +..|++.+.|.+.+++.+++.|+.... ........- ....+.+....+++..+..
T Consensus 66 L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~rd-~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 66 YQQAGSRLL--LLQGDPQHLIPQLAQQLQAEAVYWNQD-IEPYGRDRD-GQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HHHHTSCEE--EEESCHHHHHHHHHHHTTCSEEEEECC-CSHHHHHHH-HHHHHHHHHTTCEEEEECC
T ss_pred HHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecc-CChhHHHHH-HHHHHHHHHcCcEEEEecC
Confidence 777787654 467999999999999999999998654 233222222 2233345555777776653
No 141
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=70.88 E-value=15 Score=22.40 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 158 (164)
....+.++..+++.|+..... .+-+.+-++..++..+|+|++...=.. ..++ ...+.+-. ....||+++.
T Consensus 22 ~~~r~~l~~~L~~~G~~~v~~---a~~g~~al~~~~~~~~DlillD~~MP~-mdG~---el~~~ir~~~~~~~ipvI~lT 94 (134)
T 3to5_A 22 STMRRIVKNLLRDLGFNNTQE---ADDGLTALPMLKKGDFDFVVTDWNMPG-MQGI---DLLKNIRADEELKHLPVLMIT 94 (134)
T ss_dssp HHHHHHHHHHHHHTTCCCEEE---ESSHHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEE---ECCHHHHHHHHHhCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCCCCeEEEEE
Confidence 445667777788888753221 223334455566678999999876322 2211 23444432 2468998886
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 95 a~ 96 (134)
T 3to5_A 95 AE 96 (134)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 142
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=70.59 E-value=12 Score=26.37 Aligned_cols=35 Identities=11% Similarity=-0.090 Sum_probs=22.0
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l 38 (164)
..+||.|-++++..+..++-.+..- ...+++|.++
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~V 122 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLHMIPTAI 122 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSCEEEEEE
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCCeEEEEE
Confidence 3568999999988777666665542 2334444433
No 143
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=70.46 E-value=8.5 Score=25.52 Aligned_cols=34 Identities=9% Similarity=-0.097 Sum_probs=28.2
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
||++++.++-.+..+.+....|.+..+.+|+++-
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 8999999999888898888888654478887774
No 144
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=70.39 E-value=15 Score=22.00 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 160 (164)
..+.+...+...|+.+. ...+. ++.++......+|+|++...-.. ... -.....+-. ...+||+++-..
T Consensus 20 ~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 20 ALAASISALSQEGFDII---QCGNA-IEAVPVAVKTHPHLIITEANMPK-ISG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp GGHHHHHHHHHHTEEEE---EESSH-HHHHHHHHHHCCSEEEEESCCSS-SCH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHHHcCCeEE---EeCCH-HHHHHHHHcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 44455555555566443 22333 44445555667999999876332 111 124444544 346899888543
No 145
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=69.78 E-value=19 Score=23.00 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=31.2
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHH----hhhcCCcEEEEee
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEA----IDKIPLSCLVIGN 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dliVig~ 128 (164)
..+..-..+.+.+++.|+++.....-+|-.+.|.+. +...++|+||+..
T Consensus 28 i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittG 80 (169)
T 1y5e_A 28 ETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNG 80 (169)
T ss_dssp TTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred eccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 345566677888888899877665555544444433 3323689998843
No 146
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=69.29 E-value=6.3 Score=25.58 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=28.7
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
|+.+.|||+....+.+...+++...+-+...+.++.++.+.+.
T Consensus 1 M~~mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 1 MSCKPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp --CCCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCCCcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 6655678777644445667777777777666788888887654
No 147
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=68.68 E-value=17 Score=22.09 Aligned_cols=71 Identities=4% Similarity=0.049 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~ 158 (164)
....+.+...+...|..+. ...+ .++.++..++..+|+|++...-.. ...+ .....+-.. ..+|++++.
T Consensus 17 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 17 PTQAEHLKHILEETGYQTE---HVRN-GREAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHHHHHHHHTTTCEEE---EESS-HHHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEE---EeCC-HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEE
Confidence 4456677777777776542 2233 444556667778999999876322 1111 234444443 468898886
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 89 ~~ 90 (154)
T 3gt7_A 89 IL 90 (154)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 148
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=68.55 E-value=15 Score=21.31 Aligned_cols=72 Identities=4% Similarity=-0.109 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~ 158 (164)
....+.+...+...|..+.. . ...++.++...+..+|+|++...-... .. -...+.+-.. ..+|++++.
T Consensus 13 ~~~~~~l~~~L~~~g~~v~~---~-~~~~~a~~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s 84 (127)
T 3i42_A 13 QAAAETFKELLEMLGFQADY---V-MSGTDALHAMSTRGYDAVFIDLNLPDT-SG---LALVKQLRALPMEKTSKFVAVS 84 (127)
T ss_dssp HHHHHHHHHHHHHTTEEEEE---E-SSHHHHHHHHHHSCCSEEEEESBCSSS-BH---HHHHHHHHHSCCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEE---E-CCHHHHHHHHHhcCCCEEEEeCCCCCC-CH---HHHHHHHHhhhccCCCCEEEEE
Confidence 34566677777777764332 2 334455556667789999998763321 11 1234445443 468888886
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
...
T Consensus 85 ~~~ 87 (127)
T 3i42_A 85 GFA 87 (127)
T ss_dssp CC-
T ss_pred CCc
Confidence 543
No 149
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=68.31 E-value=7.4 Score=26.00 Aligned_cols=36 Identities=22% Similarity=0.038 Sum_probs=27.4
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
.++|++++.++-.+..+.+....|.+..+.+|+++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 479999999999888888888888653577777764
No 150
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=68.22 E-value=26 Score=24.02 Aligned_cols=73 Identities=11% Similarity=-0.026 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEee--CChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW--GDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+-+.+.+++.|+++...... +++.. ..++.....++|-||+......... ... +-+....+||+.+
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~-~~~~~~giPvV~~ 92 (297)
T 3rot_A 19 TSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFS-----KSL-QRANKLNIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTH-----HHH-HHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHH-HHHHHCCCCEEEE
Confidence 456677777788889887765433 34443 4555566678999998654332211 111 2345568999988
Q ss_pred cCC
Q 031168 158 KQG 160 (164)
Q Consensus 158 ~~~ 160 (164)
-..
T Consensus 93 ~~~ 95 (297)
T 3rot_A 93 DTR 95 (297)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 151
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=68.21 E-value=20 Score=22.76 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=30.1
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHH----hhhcCCcEEEEe
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEA----IDKIPLSCLVIG 127 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dliVig 127 (164)
..+..-..+.+.+++.|+++.....-+|-.+.|.+. ..+.++|+||+.
T Consensus 18 i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 18 RQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp SCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred cccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 335566677888888899877665555444444433 332268999884
No 152
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=68.14 E-value=15 Score=22.09 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+.+...+++.|.++. ...+-+++-++.+++..+|++++...=.. ..++ .+++ .++...+||+++..
T Consensus 21 ~~~l~~~L~~~G~~v~---~~a~~g~eAl~~~~~~~~DlvllDi~mP~-~~G~---el~~-~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 21 AMLIEDTLCELGHEVA---ATASRMQEALDIARKGQFDIAIIDVNLDG-EPSY---PVAD-ILAERNVPFIFATG 87 (123)
T ss_dssp SHHHHHHHHHHCCCCC---BCSCCHHHHHHHHHHCCSSEEEECSSSSS-CCSH---HHHH-HHHHTCCSSCCBCT
T ss_pred HHHHHHHHHHCCCEEE---EEECCHHHHHHHHHhCCCCEEEEecCCCC-CCHH---HHHH-HHHcCCCCEEEEec
Confidence 3445555666677642 12233444556677788999999876222 1211 2333 44556789988754
No 153
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=67.00 E-value=33 Score=24.83 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
++..+.+.+.+.+.|++++..-........+.+...+ +|.||+|.+-..
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~--~d~iiigsP~y~ 319 (404)
T 2ohh_A 271 RKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILE--SGAIALGAPTIY 319 (404)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCEET
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECcccc
Confidence 5566677777776787776654444334455444444 799999987443
No 154
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=66.90 E-value=16 Score=21.00 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+. .+.++.....++|++++...-.+. ... .....+-....+|++++...
T Consensus 14 ~~~~~l~~~l~~~~~~v~---~~~~~-~~a~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 14 VTRNTLKSIFEAEGYDVF---EATDG-AEMHQILSEYDINLVIMDINLPGK-NGL---LLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHHHHHTTTCEEE---EESSH-HHHHHHHHHSCCSEEEECSSCSSS-CHH---HHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHHHHhhCCcEEE---EeCCH-HHHHHHHhcCCCCEEEEcCCCCCC-CHH---HHHHHHHhCCCCcEEEEECC
Confidence 345566666766676532 22333 444555566789999998763221 111 23444444457888887543
No 155
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=66.77 E-value=27 Score=23.62 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHH---HhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICE---AIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~---~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++.+.+++.+.+.+...+..+..++..+.+.. .....++|.||-. |+++..|-.+.+.||+-++
T Consensus 22 ~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~ 89 (225)
T 2pju_A 22 TRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIK 89 (225)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEEC
T ss_pred HHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEec
Confidence 456666777777666666666666655444432 2333458855432 5567767777899999887
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 90 vs 91 (225)
T 2pju_A 90 PS 91 (225)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 156
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=66.71 E-value=17 Score=21.42 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh-cCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK-IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~-~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 158 (164)
....+.+...+...|..+. ...+. .+.++..+. ..+|++++...-.. ... -.....+-.. ..+|++++.
T Consensus 25 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~~dlvilD~~l~~-~~g---~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 25 PSHATLIQYHLNQLGAEVT---VHPSG-SAFFQHRSQLSTCDLLIVSDQLVD-LSI---FSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESSH-HHHHHTGGGGGSCSEEEEETTCTT-SCH---HHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEE---EeCCH-HHHHHHHHhCCCCCEEEEeCCCCC-CCH---HHHHHHHHhhCCCCCEEEEE
Confidence 3455667777776676532 22343 444455566 77999999876332 111 1234444433 368888886
No 157
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=66.50 E-value=34 Score=24.80 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=70.7
Q ss_pred ceEEEEeCCC--hhhHHHHHHHHhhcccC----CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 5 RRVGVAVDFS--ACSKKALQWAADNVVRN----GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 5 ~~ILv~~d~s--~~~~~~l~~a~~la~~~----~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
++++|-+.+. ++.++++++|.+++... +.-+.++.+.-..+-. ...|.+++.+........-
T Consensus 49 ~rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~KPRT---s~g~kGL~nDP~ld~s~~i--------- 116 (346)
T 3tqk_A 49 DRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEKPRT---TIGWKGFINDPDLDNSYNI--------- 116 (346)
T ss_dssp CSEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCS---SCSCCCTTTCTTSSSCCCH---------
T ss_pred CCEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccCCCC---CcCccccccCCCCCCCccH---------
Confidence 3555555433 24567889998887442 3334555554333211 1567777644332222221
Q ss_pred CCCchHHHHHHH---HHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 79 KPDPETLDIVNT---VARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
++=+..+++ ...+.|+++-+++..-...+ +..+. +|.+-||++.... ..-.+++....+||+
T Consensus 117 ---~~GL~~~R~ll~~~~e~GLpiatE~ld~~~~q----yv~dl-vs~~aIGARt~en-------q~hre~asg~s~PVg 181 (346)
T 3tqk_A 117 ---NKGLRLARNLLSDLTNMGLPCATEFLDVITPQ----YFAEL-ITWGAIGARTVES-------QVHRELASGLSASIG 181 (346)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCEEEECCSSSGGG----GTGGG-CSEEEECGGGTTC-------HHHHHHHTTCSSEEE
T ss_pred ---HHHHHHHHHHHHHHHhcCCCEEEEecCcCCHH----HHHHH-hheeeeCcccccC-------HHHHHHhcCCCCceE
Confidence 222232222 34677999988877754443 33333 6888999885432 123566778899998
Q ss_pred EEcC
Q 031168 156 VVKQ 159 (164)
Q Consensus 156 vv~~ 159 (164)
+=+.
T Consensus 182 ~Kng 185 (346)
T 3tqk_A 182 FKNA 185 (346)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7654
No 158
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=66.19 E-value=28 Score=23.61 Aligned_cols=66 Identities=6% Similarity=0.049 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHhcCce-EEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIV-VVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+.+.|+. +......++.. ..+++.....++|-||+.. .. .. -+....+||+++-
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~---------~~-~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FT---------IP-PNFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CC---------CC-TTCCCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hH---------HH-HHHhCCCCEEEEc
Confidence 55777888888888988 65543344443 3456777777899999875 11 11 2355688988886
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 93 ~~ 94 (277)
T 3hs3_A 93 SA 94 (277)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 159
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=66.03 E-value=27 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=27.8
Q ss_pred HHHHHhcCceEEEEEee--CC---hhHHHHHHhhhcCCcEEEEeec
Q 031168 89 NTVARQKQIVVVMKIFW--GD---PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+++.|+++...-.. .+ ..+++.+..++.++|++|+...
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy 88 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGF 88 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSC
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeCh
Confidence 56677889886542111 11 1367888888999999999755
No 160
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=66.00 E-value=16 Score=20.88 Aligned_cols=70 Identities=7% Similarity=0.045 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+ ..+..+......+|++++...-... ... ...+.+-...++|++++-..
T Consensus 13 ~~~~~l~~~L~~~~~~v~---~~~~-~~~~~~~~~~~~~dlvi~d~~l~~~-~g~---~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 13 VTQARLQSYFTQEGYTVS---VTAS-GAGLREIMQNQSVDLILLDINLPDE-NGL---MLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESS-HHHHHHHHHHSCCSEEEEESCCSSS-CHH---HHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHHHHHCCCeEE---EecC-HHHHHHHHhcCCCCEEEEeCCCCCC-ChH---HHHHHHHhcCCCCEEEEECC
Confidence 345566666666676543 2223 3455566667789999998763221 111 23444444456888887543
No 161
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=65.93 E-value=19 Score=21.72 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
....+.+...+...|+.+. ...+ ..+.++......+|+|+++..-... ... .....+-.. ..+||+++-.
T Consensus 17 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 17 QPILNSLKRLIKRLGCNII---TFTS-PLDALEALKGTSVQLVISDMRMPEM-GGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHHHHHHTTTCEEE---EESC-HHHHHHHHTTSCCSEEEEESSCSSS-CHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEE---EeCC-HHHHHHHHhcCCCCEEEEecCCCCC-CHH---HHHHHHHHhCCCCcEEEEec
Confidence 3455667777777776543 2333 3445566666779999998763321 111 234444443 4688888754
No 162
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=65.79 E-value=19 Score=27.12 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCCh----hHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDP----REKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+.+.+.|+++...+..|.+ .+.+.+.+++ ++|+|| +|... ..+.+..+......|++.||
T Consensus 106 ~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS--------viD~AK~iA~~~giP~I~IP 176 (450)
T 1ta9_A 106 CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK--------TMDSAKYIAHSMNLPSIICP 176 (450)
T ss_dssp THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH--------HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH--------HHHHHHHHHHhcCCCEEEEe
Confidence 4566777777778887555556654 3445555666 889888 55431 13455555555678999988
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
-.
T Consensus 177 TT 178 (450)
T 1ta9_A 177 TT 178 (450)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 163
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=65.54 E-value=18 Score=21.26 Aligned_cols=71 Identities=7% Similarity=0.018 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC----ccceecccchhHHHhhc-CCCcEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG----KLKRAIMGSVSNYVVNN-GSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~----~~~~~~~gs~~~~l~~~-~~~pVlv 156 (164)
....+.+...+...|..+. ...+ .++.++......+|+|++...-.. ..... .....+-.. ..+|+++
T Consensus 13 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ 85 (140)
T 2qr3_A 13 KGVLTAVQLLLKNHFSKVI---TLSS-PVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVL 85 (140)
T ss_dssp HHHHHHHHHHHTTTSSEEE---EECC-HHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHHhCCcEEE---EeCC-HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEE
Confidence 3456667777777777543 2233 345555666677999999876320 11111 233444443 4688888
Q ss_pred EcC
Q 031168 157 VKQ 159 (164)
Q Consensus 157 v~~ 159 (164)
+-.
T Consensus 86 ls~ 88 (140)
T 2qr3_A 86 FTA 88 (140)
T ss_dssp EEE
T ss_pred EEC
Confidence 743
No 164
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=65.36 E-value=8 Score=23.42 Aligned_cols=33 Identities=9% Similarity=-0.026 Sum_probs=22.8
Q ss_pred HHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEE
Q 031168 91 VARQKQIVVVMKIFWGDPREKICEAIDKIPLSCL 124 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dli 124 (164)
.+.+.|+.. ..+..|...+++.+.|++++..++
T Consensus 77 e~~~~g~k~-v~~~~G~~~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 77 YILSLKPKR-VIFNPGTENEELEEILSENGIEPV 109 (122)
T ss_dssp HHHHHCCSE-EEECTTCCCHHHHHHHHHTTCEEE
T ss_pred HHHhcCCCE-EEECCCCChHHHHHHHHHcCCeEE
Confidence 344567774 335557777899999999876543
No 165
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=65.32 E-value=30 Score=23.64 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC--Chh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG--DPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+.+.+.+++.|+++......+ ++. ...++.....++|-||+......... ...+. +. ..+||+++
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~~-~~-~~iPvV~~ 93 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE-----HNLKS-WV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST-----TTHHH-HT-TTSCEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-----HHHHH-Hc-CCCCEEEe
Confidence 4567777888888898877765555 543 34556666678999999755433222 22333 34 78999988
Q ss_pred c
Q 031168 158 K 158 (164)
Q Consensus 158 ~ 158 (164)
-
T Consensus 94 ~ 94 (304)
T 3o1i_D 94 V 94 (304)
T ss_dssp S
T ss_pred c
Confidence 3
No 166
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=65.27 E-value=31 Score=23.87 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+-++.+++.+++.|+.+-+.+..-.-.+.+ .+. +|.+=||++.-.... .-+++.. ..+||++=+.
T Consensus 73 ~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l----~~~-vd~~kIga~~~~n~~------ll~~~a~-~~kPV~lk~G 138 (262)
T 1zco_A 73 EKALRWMREAADEYGLVTVTEVMDTRHVELV----AKY-SDILQIGARNSQNFE------LLKEVGK-VENPVLLKRG 138 (262)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCCGGGHHHH----HHH-CSEEEECGGGTTCHH------HHHHHTT-SSSCEEEECC
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHhHHHH----Hhh-CCEEEECcccccCHH------HHHHHHh-cCCcEEEecC
Confidence 5668888899999999988766654333333 344 689999987433211 1233333 6788887543
No 167
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=65.27 E-value=19 Score=21.45 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcC-ceEEEEEeeCChhHHHHHHhhh-cCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQ-IVVVMKIFWGDPREKICEAIDK-IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~I~~~a~~-~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 158 (164)
....+.+...+...| +.+.. ..+..+.+....+. ..+|+|++...-.. ... -.....+-.. ..+||+++-
T Consensus 30 ~~~~~~l~~~L~~~g~~~v~~---~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~lt 102 (146)
T 4dad_A 30 ASRLAHLARLVGDAGRYRVTR---TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAE---LAAIEKLSRLHPGLTCLLVT 102 (146)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE---ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHH---HHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHhhCCCeEEEE---eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccH---HHHHHHHHHhCCCCcEEEEe
Confidence 445566777777766 65443 34556666666665 77999999876322 111 1234444433 358888875
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 103 ~~ 104 (146)
T 4dad_A 103 TD 104 (146)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 168
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=65.24 E-value=37 Score=26.10 Aligned_cols=36 Identities=17% Similarity=0.013 Sum_probs=26.8
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
+++++++++.-+|..++..+.+. .+.+++++|+...
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCC
Confidence 68999999998887666655442 2467999998754
No 169
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=65.10 E-value=32 Score=23.90 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++......++... ..++.....++|-||+......... ... .-+....+||+++-.
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 19 IDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS-----DVL-KQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH-----HHH-HHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH-----HHH-HHHHHCCCCEEEECC
Confidence 55777788888888988776655556543 3455555667999998654321111 112 235566899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 93 ~ 93 (330)
T 3uug_A 93 L 93 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=64.98 E-value=19 Score=21.20 Aligned_cols=73 Identities=7% Similarity=0.059 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
....+.+...+...|+.+.. ...+. ++.++......+|+|++...-.+..... .....+-....+|++++-..
T Consensus 19 ~~~~~~l~~~L~~~g~~v~~--~~~~~-~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 19 RLAAATLRIQLESLGYDVLG--VFDNG-EEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHHHHHTCEEEE--EESSH-HHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHHHHHHCCCeeEE--EECCH-HHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 33556666666666775432 12333 4444555556799999987633111111 23344443457898888543
No 171
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=64.94 E-value=13 Score=26.89 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=33.7
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecC-CCc-cceecccchhHHHhhcCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRG-LGK-LKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~-~~~-~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
.+..+.++...+ +|+||+|... .+. ...+++..+.+. +..+++|++.+.+-
T Consensus 166 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 166 EPMNEAIEALEQ--ADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSNV 218 (332)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECCS
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 345677777777 7999999763 222 223344445554 67789999988764
No 172
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=64.87 E-value=30 Score=23.51 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++... ..++.....++|-||+......... ... +-+....+||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 24 QRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG-----SAI-EEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-----HHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHH-HHHHHcCCCEEEecC
Confidence 55777788888888998776555555543 4556666678999998654322211 122 234556899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 98 ~ 98 (293)
T 3l6u_A 98 M 98 (293)
T ss_dssp C
T ss_pred C
Confidence 3
No 173
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=64.81 E-value=17 Score=20.64 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
..+.+...+...|..+. ...+.. +.++......+|++++...-.. .... .....+-...++|++++-..
T Consensus 13 ~~~~l~~~l~~~~~~v~---~~~~~~-~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 13 ISDIIKFNMTKEGYEVV---TAFNGR-EALEQFEAEQPDIIILDLMLPE-IDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHHTTCEEE---EESSHH-HHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHHhcCcEEE---EecCHH-HHHHHHHhCCCCEEEEeccCCC-CCHH---HHHHHHHhCCCCCEEEEecC
Confidence 44556666666676543 223433 3444555667999999876322 1111 23444444567898887543
No 174
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=64.65 E-value=24 Score=22.76 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=32.6
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEee
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGN 128 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig~ 128 (164)
+..+..-..+.+.+.+.|+++.....-+|-.+.|.+..++ .++|+||+..
T Consensus 19 ~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittG 70 (172)
T 3kbq_A 19 RTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSG 70 (172)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEES
T ss_pred cEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcC
Confidence 3446677788888999999987776666554444433222 1379988743
No 175
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=64.52 E-value=31 Score=23.60 Aligned_cols=37 Identities=5% Similarity=-0.032 Sum_probs=26.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
.+++++|++++.-+|..++..+... .+.+++.+|+..
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~~ 61 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMPT 61 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECCS
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEecC
Confidence 4689999999998887666655543 246788887754
No 176
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=64.19 E-value=26 Score=23.76 Aligned_cols=73 Identities=7% Similarity=-0.042 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++.. ...++.....++|-||+........ .... ..+....+||+++..
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-----~~~~-~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 21 LKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVL-----NPWL-QKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHH-----HHHH-HHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh-----HHHH-HHHHHCCCcEEEecC
Confidence 4567778888888898877655445553 3455666667899999875421111 1122 234556899988854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 95 ~ 95 (291)
T 3l49_A 95 A 95 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 177
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=64.07 E-value=20 Score=21.15 Aligned_cols=71 Identities=7% Similarity=0.053 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHh-cCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEE
Q 031168 82 PETLDIVNTVARQ-KQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlv 156 (164)
....+.+...+.. .|+. +.. ..+ .++.++..+...+|+|++...-... .. -...+.+-. ...+||++
T Consensus 18 ~~~~~~l~~~L~~~~~~~~v~~---~~~-~~~a~~~l~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~ 89 (143)
T 3cnb_A 18 KEFADMLTQFLENLFPYAKIKI---AYN-PFDAGDLLHTVKPDVVMLDLMMVGM-DG---FSICHRIKSTPATANIIVIA 89 (143)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEE---ECS-HHHHHHHHHHTCCSEEEEETTCTTS-CH---HHHHHHHHTSTTTTTSEEEE
T ss_pred HHHHHHHHHHHHhccCccEEEE---ECC-HHHHHHHHHhcCCCEEEEecccCCC-cH---HHHHHHHHhCccccCCcEEE
Confidence 3455667777776 6776 332 223 3445555666779999998763321 11 123444544 24688888
Q ss_pred EcCC
Q 031168 157 VKQG 160 (164)
Q Consensus 157 v~~~ 160 (164)
+-..
T Consensus 90 ~s~~ 93 (143)
T 3cnb_A 90 MTGA 93 (143)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7543
No 178
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=63.97 E-value=26 Score=22.44 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHH----hhhcCCcEEEEee
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEA----IDKIPLSCLVIGN 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dliVig~ 128 (164)
..+..-..+.+.+.+.|+++.....-+|-.+.|.+. ....++|+|+...
T Consensus 37 i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 37 IVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 345566778888999999987777777655555443 3345689998854
No 179
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=63.91 E-value=21 Score=27.42 Aligned_cols=131 Identities=10% Similarity=0.020 Sum_probs=73.8
Q ss_pred ceEEEEe--CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 5 RRVGVAV--DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 5 ~~ILv~~--d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
+.+|+=+ |.--....+|..|+.. +.+|.++++.++....... + .+ ...... ....-.-
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~---~--~~-----~~~~~~------~r~~Fl~ 99 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTH---F--FN-----FPKTGA------LRGGFLM 99 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCT---T--TC-----CBSSCH------HHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccc---c--cc-----CCCCCH------HHHHHHH
Confidence 3445544 3333456677777654 3479999998864211000 0 00 000000 0001234
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC--CcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS--CPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~--~pVlvv~~ 159 (164)
+.++.+++.+++.|+.+. ++.|++.+.|.+.+++.+++.|+.... .......... ...+.+.... +++..+..
T Consensus 100 ~sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~rd~-~v~~~l~~~gv~i~~~~~~~ 174 (525)
T 2j4d_A 100 ECLVDLRKNLMKRGLNLL--IRSGKPEEILPSLAKDFGARTVFAHKE-TCSEEVDVER-LVNQGLKRVGNSTKLELIWG 174 (525)
T ss_dssp HHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHHTCSEEEEECC-CSHHHHHHHH-HHHHHHHTTCSSCEEEEECC
T ss_pred HHHHHHHHHHHHcCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecc-CCHHHHHHHH-HHHHHHHhcCCceEEEEecC
Confidence 567777777877787654 467999999999999999999998754 2333322222 2233444444 67766654
No 180
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=63.20 E-value=20 Score=21.02 Aligned_cols=71 Identities=11% Similarity=-0.063 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcC-ceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQ-IVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~ 159 (164)
....+.+...+...| +.+. ...+. ++.++......+|+|++...-.. ... -.....+-... .+|++++..
T Consensus 24 ~~~~~~l~~~L~~~g~~~v~---~~~~~-~~a~~~l~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~ 95 (135)
T 3snk_A 24 PNFKRDVATRLDALAIYDVR---VSETD-DFLKGPPADTRPGIVILDLGGGD-LLG---KPGIVEARALWATVPLIAVSD 95 (135)
T ss_dssp HHHHHHHHHHHHHTSSEEEE---EECGG-GGGGCCCTTCCCSEEEEEEETTG-GGG---STTHHHHHGGGTTCCEEEEES
T ss_pred HHHHHHHHHHHhhcCCeEEE---EeccH-HHHHHHHhccCCCEEEEeCCCCC-chH---HHHHHHHHhhCCCCcEEEEeC
Confidence 445666777777777 6544 12222 33344556778999999876332 111 13344454443 689988865
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 96 ~ 96 (135)
T 3snk_A 96 E 96 (135)
T ss_dssp C
T ss_pred C
Confidence 4
No 181
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=63.11 E-value=41 Score=24.48 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
++-++.+++.+++.|+.+-+.+..-.-.+.+.++ +|.+=||++.-.... .-+++. ...+||++=+.
T Consensus 156 ~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~-----vd~lkIgAr~~~n~~------LL~~va-~~~kPVilk~G 221 (350)
T 1vr6_A 156 EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY-----ADIIQIGARNAQNFR------LLSKAG-SYNKPVLLKRG 221 (350)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH-----CSEEEECGGGTTCHH------HHHHHH-TTCSCEEEECC
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-----CCEEEECcccccCHH------HHHHHH-ccCCcEEEcCC
Confidence 4678888899999999988866654445544443 589999887543221 123333 46788776543
No 182
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=62.97 E-value=10 Score=27.53 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=32.7
Q ss_pred hhHHHHHHhhhcCCcEEEEeecC-CC-ccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRG-LG-KLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~-~~-~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
+..+.++...+ +|+||+|... .+ -...+++..+.+. +..+++|++.|.+-
T Consensus 178 a~p~al~AI~~--AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~Nl 229 (341)
T 2p0y_A 178 AVQPVIDAIMA--ADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICNI 229 (341)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECCS
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeCC
Confidence 34566777766 7999999763 22 2333445555554 67788999888763
No 183
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=62.96 E-value=21 Score=21.10 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
....+.+...+...|..+. ...+. .+.++......+|+|++...-.. ...+ ...+.+-....+|++++-..
T Consensus 14 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvllD~~l~~-~~g~---~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 14 KDNCQKLKGFLEEKGISID---LAYNC-EEAIGKIFSNKYDLIFLEIILSD-GDGW---TLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp HHHHHHHHHHHHTTTCEEE---EESSH-HHHHHHHHHCCCSEEEEESEETT-EEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEE---EECCH-HHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHccCCCCCEEEEEcC
Confidence 3355666666766676543 23343 44445556678999999865322 1111 23444544447898887543
No 184
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=62.79 E-value=43 Score=24.61 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=39.8
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
+...+.+.|++++... .+.+..++ ++.++|.|++|...-..... .-+|+-.-.++ ++..+|++++-+
T Consensus 225 tA~eL~~~GIpvtlI~--Dsa~~~~M---~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 225 TAWELMQGGIDVTLIT--DSMAAHTM---KEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHHHTTTCEEEEEC--GGGHHHHH---HHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHcCCCEEEEe--hhHHHHHh---hhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 3444667799887532 33333333 34568999999975222111 12465555554 566899999843
No 185
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=62.62 E-value=25 Score=23.12 Aligned_cols=48 Identities=6% Similarity=-0.107 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
..+.+.+.+.+++.|.+++..-+.. +..+.+.+...+ +|.||++.+-.
T Consensus 33 ~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y 81 (204)
T 2amj_A 33 DTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGW 81 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECB
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCcc
Confidence 4566677777777788887766553 446666666666 79999999754
No 186
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=62.58 E-value=35 Score=26.15 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=30.9
Q ss_pred hhHHHHHHh-hhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 108 PREKICEAI-DKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 108 ~~~~I~~~a-~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+ +..++|.||+-.+.-+. .+..-.+++..++|||+..
T Consensus 59 ~~~~~~~~~n~~~~vdgvi~~~~TFs~------a~~~i~~l~~l~~PvL~~~ 104 (500)
T 4f2d_A 59 EITAICRDANYDDRCAGLVVWLHTFSP------AKMWINGLTMLNKPLLQFH 104 (500)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECCSCCC------THHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHhccccCCcEEEEeCCcCcc------HHHHHHHHHhcCCCEEEEe
Confidence 345555566 56689999997775443 2344457788899999974
No 187
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=62.07 E-value=9.1 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=26.4
Q ss_pred CceEEEEe-CCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAV-DFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~-d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
|.|||+.. +.+.++..+++...+.+...+.++.++.+.+
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 45676665 3334567777777777776777888887755
No 188
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=61.98 E-value=8.5 Score=26.49 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+++++.+.+.|.++...+--| +..+-+..+.+.++|.+|+|+.
T Consensus 181 KI~~lr~~~~~~~~~~~I~VDGG-I~~~ti~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 181 KAKEISKWISSTDRDILLEIDGG-VNPYNIAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHHTSCCEEEEESS-CCTTTHHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHHhcCCCeeEEEECC-cCHHHHHHHHHcCCCEEEEehH
Confidence 34556666666676666544444 3334455667778999999964
No 189
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=61.73 E-value=41 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=25.1
Q ss_pred eEEEEeCC-----ChhhHHHHHHHHhhcccCC-CEEEEEEEec
Q 031168 6 RVGVAVDF-----SACSKKALQWAADNVVRNG-DHLILVTVVP 42 (164)
Q Consensus 6 ~ILv~~d~-----s~~~~~~l~~a~~la~~~~-~~l~~l~v~~ 42 (164)
.|||-.+. ++.+..++..|.+|+. .+ .+++++.+-+
T Consensus 2 ~ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~G~ 43 (320)
T 1o97_D 2 KILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVIGS 43 (320)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEEST
T ss_pred eEEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEECC
Confidence 35665542 3567899999999987 55 5888876553
No 190
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=61.33 E-value=39 Score=23.65 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++... ..++.....++|-||+...... ......++...++||+++-.
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-------VDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-------HHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-------hHHHHHHHHcCCCCEEEEcC
Confidence 55777788888888988766544444433 3556666778999998643221 11234466677899988854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 152 ~ 152 (338)
T 3dbi_A 152 R 152 (338)
T ss_dssp C
T ss_pred C
Confidence 3
No 191
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=61.29 E-value=23 Score=20.94 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 158 (164)
....+.+...+...|..+. ...+. ++.++......+|+|++...-.. ...+ ...+.+-. ...+|++++.
T Consensus 14 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~lr~~~~~~~~pii~~t 85 (136)
T 3t6k_A 14 DTVAEMLELVLRGAGYEVR---RAASG-EEALQQIYKNLPDALICDVLLPG-IDGY---TLCKRVRQHPLTKTLPILMLT 85 (136)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSGGGTTCCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEE---EeCCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHcCCCcCCccEEEEe
Confidence 3355666777777776543 22343 44455666778999999876322 1111 23344433 2357888876
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 86 ~~ 87 (136)
T 3t6k_A 86 AQ 87 (136)
T ss_dssp CT
T ss_pred cC
Confidence 54
No 192
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=61.11 E-value=49 Score=25.47 Aligned_cols=46 Identities=4% Similarity=-0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.+..........+..+.-..++.+.+++.++||++-+++
T Consensus 402 ~~~~~~~~l~~~~~~~~~~v~~~~D~~~l~~~i~~~~pDLlig~s~ 447 (523)
T 3u7q_B 402 WKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSY 447 (523)
T ss_dssp HHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHTCCSEEEECTT
T ss_pred HHHHHHHHHhhccCCCCcEEEECCCHHHHHHHHHhcCCCEEEECcc
Confidence 3444555554322211233555656777888888888999887765
No 193
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=61.07 E-value=54 Score=25.18 Aligned_cols=46 Identities=4% Similarity=-0.132 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.+..........+..+.-...+.+.+++.++||+|-+.+
T Consensus 398 ~~~~~~~ll~~~~~~~~~~v~~~~d~~~l~~~i~~~~pDLiig~~~ 443 (519)
T 1qgu_B 398 WQKAMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSY 443 (519)
T ss_dssp HHHHHHHHHHHSTTCTTCEEEESCCHHHHHHHHHHHCCSEEEECGG
T ss_pred HHHHHHHHHHhcCCCCCCEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 4455555555432222234566655666778888888999886544
No 194
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=61.04 E-value=21 Score=20.48 Aligned_cols=71 Identities=7% Similarity=0.025 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
....+.+...+...|..+. ...+. .+.++......+|++++...-.+ .... ...+.+-. ...+|++++...
T Consensus 13 ~~~~~~l~~~l~~~~~~v~---~~~~~-~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 13 SGIRILLNEVFNKEGYQTF---QAANG-LQALDIVTKERPDLVLLDMKIPG-MDGI---EILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHHHHHHHTTTCEEE---EESSH-HHHHHHHHHHCCSEEEEESCCTT-CCHH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHCCcEEE---EeCCH-HHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCCEEEEEcc
Confidence 3355666666766676543 22333 34445555667999999876322 1111 23444443 346888887543
No 195
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=60.49 E-value=32 Score=26.25 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=69.9
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
|.--....+|..|++. + ++..|+|.++..... . ... .... .-.-+.++.+++.
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~------------~-----~~~--~~~~---~fl~~sL~~L~~~ 73 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGH------------Y-----HPG--RVSR---WWLKNSLAQLDSS 73 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTT------------C-----CCC--HHHH---HHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhccc------------C-----Ccc--hHHH---HHHHHHHHHHHHH
Confidence 4444456688888764 2 577888887642110 0 000 0010 1235567777778
Q ss_pred HHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 92 ARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 92 ~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+++.|+.+. +.. |++.+.|.+.+++.+++.|+.... ..+..... -....+.+....+++..+..
T Consensus 74 L~~~G~~L~--v~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 74 LRSLGTCLI--TKRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLVR-DHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHTTCCEE--EEECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred HHHCCCeEE--EEeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHHcCcEEEEECC
Confidence 888888754 444 699999999999999999998753 23222211 12234455566788776654
No 196
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=60.42 E-value=45 Score=24.08 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
..+...+.+.|++++..... .+..++ .++|.|++|...-..... .-+|+-.-.++ ++..+|++++-+
T Consensus 182 rltA~eL~~~GI~vtlI~Ds--a~~~~M-----~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 182 KITAKELASYGIPVIYVVDS--AARHYM-----KMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHHHHHHHTTCCEEEECGG--GTTTTG-----GGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEehH--HHHHHH-----HhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEecc
Confidence 34445566779998864332 222222 348999999975322221 12466555555 566899999843
No 197
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=60.26 E-value=46 Score=24.15 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=39.7
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
+...+.+.|++++... .+....+ .++.++|.|++|...-..... .-+|+-.-.++ ++..+|++++-+
T Consensus 200 ta~eL~~~GI~vtlI~--Dsa~~~~---M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 200 TAWELMKDGIEVYVIT--DNMAGWL---MKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHHHTTTCEEEEEC--GGGHHHH---HHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHhCCCCEEEEe--hhHHHHH---hhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 3444567799887532 3333333 344568999999975322121 12465555554 566899999843
No 198
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=60.18 E-value=24 Score=20.82 Aligned_cols=72 Identities=7% Similarity=0.047 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHh-cCceEEEEEeeCChhHHHHHHhhh-cCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEE
Q 031168 82 PETLDIVNTVARQ-KQIVVVMKIFWGDPREKICEAIDK-IPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~-~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlv 156 (164)
....+.+...+.. .|+++. ...+ .++.++...+ ..+|+|++...-.+....+ ...+.+-. ...+||++
T Consensus 14 ~~~~~~l~~~L~~~~~~~v~---~~~~-~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ 86 (140)
T 3lua_A 14 EYEREKTKIIFDNIGEYDFI---EVEN-LKKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVII 86 (140)
T ss_dssp HHHHHHHHHHHHHHCCCEEE---EECS-HHHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEE
T ss_pred HHHHHHHHHHHHhccCccEE---EECC-HHHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEE
Confidence 3455667777776 677544 2233 4445566666 7899999987633111111 23344443 35689888
Q ss_pred EcCC
Q 031168 157 VKQG 160 (164)
Q Consensus 157 v~~~ 160 (164)
+-..
T Consensus 87 ls~~ 90 (140)
T 3lua_A 87 ATKS 90 (140)
T ss_dssp EESC
T ss_pred EeCC
Confidence 8543
No 199
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=60.17 E-value=58 Score=25.27 Aligned_cols=37 Identities=11% Similarity=-0.050 Sum_probs=26.4
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
.++++|++++.-+|.-++..+.+ ..+.+++++|+...
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~---~~G~~v~~v~vd~g 291 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHK---IFKERFFGIFIDNG 291 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHH---HHGGGEEEEEEECS
T ss_pred CceEEEEcccCCCHHHHHHHHHH---HhCCeEEEEEEecC
Confidence 46899999999888655554433 23568999998753
No 200
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=60.16 E-value=38 Score=23.10 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh-hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++. ....++.....++|-||+....... .... .+.. .+||+++-.
T Consensus 27 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 27 GDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-------DELG-ALAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-------HHHH-HHHT-TSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-------HHHH-HHHc-CCCEEEEcC
Confidence 456777777788888876665444422 4445555566678888886543221 1222 2344 888888754
No 201
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=60.06 E-value=34 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=26.5
Q ss_pred HHHHHhcCceEEEEEee---CChhHHHHHHhhhcCCcEEEEeec
Q 031168 89 NTVARQKQIVVVMKIFW---GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+.+.|+++...... +....++++..++.++|++|+...
T Consensus 65 ~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y 108 (329)
T 2bw0_A 65 GLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFC 108 (329)
T ss_dssp HHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSC
T ss_pred HHHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEeeh
Confidence 35567778875442111 112356778888889999998755
No 202
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=59.81 E-value=49 Score=24.30 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=55.8
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCC---------E-----EEEEEEecCCCCCccccccccCCCCCCCCCCCCccch
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGD---------H-----LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPT 71 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~---------~-----l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (164)
||-|.+..-..++...+.+.++.+..+. . =.++|+.-+.++..
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~s----------------------- 70 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTS----------------------- 70 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGG-----------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchH-----------------------
Confidence 6777777767777777777777766543 0 24677754444331
Q ss_pred hhhhhcCCCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 72 IMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+.....+.+...+...++++-.......-....++..++.++|.|+++..
T Consensus 71 --------e~~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 71 --------NIDSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp --------GHHHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred --------HHHHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 11223566666666666554433222222356678888888998887764
No 203
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=59.70 E-value=24 Score=20.79 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
....+.+...+...|+.+. ...+ ..+.++..+...+|+|++.. -.. ... -.....+-.. ..+|++++-..
T Consensus 14 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~-~~~-~~g---~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 14 RITFLAVKNALEKDGFNVI---WAKN-EQEAFTFLRREKIDLVFVDV-FEG-EES---LNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHHHHGGGTCEEE---EESS-HHHHHHHHTTSCCSEEEEEC-TTT-HHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCEEE---EECC-HHHHHHHHhccCCCEEEEeC-CCC-CcH---HHHHHHHHHHCCCCCEEEEECC
Confidence 4456677777777777543 2233 34455566667899999997 322 111 1233444443 35898888543
No 204
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=59.58 E-value=23 Score=20.43 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~ 159 (164)
...+.+...+...|..+. ...+. .+.++..+..++|+|++...-.. ...+ ...+.+-.. ..+||+++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~---~~~~~-~~al~~l~~~~~dlvllD~~~p~-~~g~---~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVI---EAENG-QIALEKLSEFTPDLIVLXIMMPV-MDGF---TVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHTTBCCSEEEECSCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHHHHHHCCcEEE---EeCCH-HHHHHHHHhcCCCEEEEeccCCC-CcHH---HHHHHHHhcccccCCCEEEEec
Confidence 345566667777776543 22344 44455566778999999875322 1111 234444333 3589988865
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 85 ~ 85 (122)
T 3gl9_A 85 K 85 (122)
T ss_dssp C
T ss_pred C
Confidence 4
No 205
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=59.57 E-value=30 Score=21.79 Aligned_cols=71 Identities=4% Similarity=-0.086 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
....+.+...+...|..+. ...+. .+.++......+|+|++...-... .. -.....+-. ...+||+++...
T Consensus 17 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvl~D~~lp~~-~g---~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 17 EVFAGTLARGLERRGYAVR---QAHNK-DEALKLAGAEKFEFITVXLHLGND-SG---LSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EECSH-HHHHHHHTTSCCSEEEECSEETTE-ES---HHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEE---EeCCH-HHHHHHHhhCCCCEEEEeccCCCc-cH---HHHHHHHHhcCCCCCEEEEeCC
Confidence 3455667777777776542 22333 444556677789999998652221 11 123444444 346899888654
No 206
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=59.47 E-value=16 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=33.9
Q ss_pred hhHHHHHHhhhcCCcEEEEeecC-CC-ccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRG-LG-KLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~-~~-~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
+..+.++..++ +|+||+|... .+ -...+++..+.+. +..+++|++.+.+-
T Consensus 168 ~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 168 PLREGLEAIRK--ADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCS
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 45677777777 7999999763 22 2333445556665 67789999888764
No 207
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=59.10 E-value=41 Score=23.24 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=30.7
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
.+.|.+..++.++|+|+.-......-.....+..+...++..+.|++..
T Consensus 134 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 182 (270)
T 3dfi_A 134 REDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLW 182 (270)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCChhHHHHHHHHHHHHHHcCCCeeEe
Confidence 4556678888999999885443333333344555666666666776554
No 208
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=58.97 E-value=40 Score=23.04 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHhcCceEEEEE-eeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKI-FWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+++.|+.+.... ..++... ..++.....++|-||+......... ... .-+....+||+++-
T Consensus 20 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~-~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 20 KRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELT-----DTI-NKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTH-----HHH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHH-----HHH-HHHHHCCCcEEEEC
Confidence 5577788888888898877633 2335433 4455566678999998654322111 112 23455689999885
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 94 ~~ 95 (305)
T 3g1w_A 94 SG 95 (305)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 209
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=58.73 E-value=40 Score=22.91 Aligned_cols=71 Identities=14% Similarity=0.036 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++.. ..+++.....++|-||+...... ...-..+....+||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 24 AEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE--------HDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--------CHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------hHHHHHhhccCCCEEEEec
Confidence 5577788888888898877655544543 34667777778999998654321 1122345566899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 96 ~ 96 (291)
T 3egc_A 96 E 96 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 210
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=58.72 E-value=45 Score=23.50 Aligned_cols=75 Identities=8% Similarity=0.025 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+......+++-..+-..+..+. +.+.|++.++|-+.+-.+.......--+=..-+.|...++.||++..
T Consensus 65 v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 141 (301)
T 3m5v_A 65 CIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYN 141 (301)
T ss_dssp HHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444332213444333222244444 34678889999999987654332221111233457778899999874
No 211
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=58.54 E-value=37 Score=22.43 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
...+.+...+...|..+. ...+..+. ++......+|+|++...-.. ...+ .....+-....+||+++..
T Consensus 16 ~~~~~l~~~L~~~g~~v~---~~~~~~~a-l~~l~~~~~dlvilD~~l~~-~~g~---~~~~~lr~~~~~~ii~lt~ 84 (238)
T 2gwr_A 16 SLAEMLTIVLRGEGFDTA---VIGDGTQA-LTAVRELRPDLVLLDLMLPG-MNGI---DVCRVLRADSGVPIVMLTA 84 (238)
T ss_dssp HHHHHHHHHHHHTTCEEE---EECCGGGH-HHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEE---EECCHHHH-HHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCCcEEEEeC
Confidence 355666666666677643 22333333 34445567999999876322 1111 2344454445799988854
No 212
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=58.46 E-value=36 Score=23.29 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCceEEEEEee-C-------Ch--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-G-------DP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCP 153 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-g-------~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~p 153 (164)
..+.+.+.+++.|+.+...+.. | ++ ..++.+.+.+.++|.|.++.. ..+ ....++....++|
T Consensus 133 ~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~ip 204 (273)
T 2qjg_A 133 DLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPAP 204 (273)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCCC
Confidence 4556667777778876554311 1 12 234457788899999988731 111 2345667677899
Q ss_pred EEEEcC
Q 031168 154 VTVVKQ 159 (164)
Q Consensus 154 Vlvv~~ 159 (164)
|+....
T Consensus 205 vva~GG 210 (273)
T 2qjg_A 205 VVVAGG 210 (273)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 988753
No 213
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=58.45 E-value=39 Score=22.68 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
....+.+...+...|..+. ...+. .+.++......+|+|++...-.. ... -.....+-....+||+++...
T Consensus 47 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~DlvllD~~lp~-~~G---~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 47 HDIANVLRMDLTDAGYVVD---HADSA-MNGLIKAREDHPDLILLDLGLPD-FDG---GDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHHHHHHTTTCEEE---EESSH-HHHHHHHHHSCCSEEEEECCSCH-HHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEE---EeCCH-HHHHHHHhcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCCCCCEEEEECC
Confidence 3455666677776675332 22343 44455566678999999876322 111 134455555567999988654
No 214
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=58.44 E-value=12 Score=27.01 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=31.8
Q ss_pred hHHHHHHhhhcCCcEEEEeecC-CC-ccceecccchhHHHhhcCCCcEEEEcC
Q 031168 109 REKICEAIDKIPLSCLVIGNRG-LG-KLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~-~~-~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
..+.++..++ +|+||+|... .+ -...+++..+.+. +..+++|++.+.+
T Consensus 175 ~p~al~AI~~--AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 175 SRRVVQTILE--SDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp CSHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CHHHHHHHHh--CCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 4556677766 7999999763 22 2333445555554 6778899988876
No 215
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=58.38 E-value=22 Score=25.66 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCC----hhHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGD----PREKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~----~~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+.+++.|+++......++ ..+.+ +.+++.++|.|| +|... ..+++..+......|++.||
T Consensus 49 ~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGs--------v~D~aK~vA~~~~~p~i~IP 119 (354)
T 3ce9_A 49 FGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGK--------AIDAVKYMAFLRKLPFISVP 119 (354)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHH--------HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChH--------HHHHHHHHHhhcCCCEEEec
Confidence 557777777777887755431232 35566 777788899888 55431 13444545544578888887
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
-
T Consensus 120 T 120 (354)
T 3ce9_A 120 T 120 (354)
T ss_dssp S
T ss_pred C
Confidence 4
No 216
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=58.37 E-value=24 Score=20.18 Aligned_cols=71 Identities=6% Similarity=0.026 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~ 158 (164)
....+.+...+...|..+. ...+.. +.++..+...+|++++...-.. ... -...+.+-.. ..+|++++.
T Consensus 11 ~~~~~~l~~~L~~~~~~v~---~~~~~~-~a~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 11 ELNMKLFHDLLEAQGYETL---QTREGL-SALSIARENKPDLILMDIQLPE-ISG---LEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESCHH-HHHHHHHHHCCSEEEEESBCSS-SBH---HHHHHHHHHSTTTTTSCEEEEC
T ss_pred HHHHHHHHHHHHHcCcEEE---EeCCHH-HHHHHHhcCCCCEEEEeCCCCC-CCH---HHHHHHHHcCccccCCcEEEEE
Confidence 3355666666766677543 223433 4445556667999999876322 111 1234444442 368998885
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 83 ~~ 84 (124)
T 1mb3_A 83 AF 84 (124)
T ss_dssp --
T ss_pred CC
Confidence 43
No 217
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=58.34 E-value=26 Score=23.97 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
.+.++.+.+.+.|.|.+|...--..... -.+.+.+-. .+.|+++.|...
T Consensus 26 ~~~l~~~~~~GtDaI~vGgs~gvt~~~~--~~~v~~ik~-~~~Piil~p~~~ 74 (235)
T 3w01_A 26 DDDLDAICMSQTDAIMIGGTDDVTEDNV--IHLMSKIRR-YPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHHTSSCSEEEECCSSCCCHHHH--HHHHHHHTT-SCSCEEEECCCS
T ss_pred HHHHHHHHHcCCCEEEECCcCCcCHHHH--HHHHHHhcC-cCCCEEEecCCH
Confidence 3455666788899999998532222211 234444444 789999998753
No 218
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=58.31 E-value=51 Score=24.01 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=75.4
Q ss_pred eEEEEeCCC--hhhHHHHHHHHhhccc---CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 6 RVGVAVDFS--ACSKKALQWAADNVVR---NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 6 ~ILv~~d~s--~~~~~~l~~a~~la~~---~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
+++|-+.+. ++.+.++++|.+|+.. .+..|.++.=......... ..|.+++.+........
T Consensus 53 rllvIaGPCsie~~e~aleyA~~L~~~~~~l~d~l~ivmR~yfeKPRTs--~g~kGl~~dP~ld~s~~------------ 118 (350)
T 1n8f_A 53 RLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTT--VGWKGLINDPHMDNSFQ------------ 118 (350)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCCCCSS--SSCCCTTTCTTSSSCCC------------
T ss_pred ceEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccCcCC--cCcCCCCCCCCcccccc------------
Confidence 455544333 2346788888887654 3444555543332222222 34877775443333322
Q ss_pred CchHHHHHHHH---HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 81 DPETLDIVNTV---ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
.++=++.+++. ..+.|+++-+++..-...+.+.+ . +|.+-||++.-.. ..-..++....|||.+=
T Consensus 119 i~~GL~ilr~ll~~~~e~GlPv~TEvld~~~~~~vad----~-vd~~qIGAR~~es-------q~hr~~asg~~~PVg~K 186 (350)
T 1n8f_A 119 INDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLAD----L-MSWGAIGARTTES-------QVHRELASGLSCPVGFK 186 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECCCSSTHHHHGG----G-CSEEEECTTTTTC-------HHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEeecCcccHHHHhh----c-CcEEEECCccccC-------HHHHHHHhcCCCeEEEe
Confidence 25556666666 66789999988877655444433 3 6899999884322 12234666789999875
Q ss_pred cCC
Q 031168 158 KQG 160 (164)
Q Consensus 158 ~~~ 160 (164)
+..
T Consensus 187 ngt 189 (350)
T 1n8f_A 187 NGT 189 (350)
T ss_dssp CCT
T ss_pred cCC
Confidence 543
No 219
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=58.27 E-value=29 Score=22.01 Aligned_cols=47 Identities=9% Similarity=0.193 Sum_probs=26.1
Q ss_pred chHHHHHHHH----HHhcCceEEEEEeeCChhHHHHHHhhh---cCCcEEEEee
Q 031168 82 PETLDIVNTV----ARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGN 128 (164)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliVig~ 128 (164)
+..-..+.+. +++.|+++.....-+|-.+.|.+..++ .++|+||...
T Consensus 24 D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 24 NKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp CCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEES
T ss_pred ccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 4455567777 778888876655555544444433322 2489998843
No 220
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=58.26 E-value=42 Score=23.04 Aligned_cols=70 Identities=10% Similarity=0.151 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccc-hhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGS-VSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs-~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+.+.|+.+......++. ...+++.....++|-||+....... . ....+. . .+||+++-
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~~l~-~-~iPvV~i~ 101 (303)
T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-------DDMLAAVL-E-GVPAVTIN 101 (303)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-------HHHHHHHH-T-TSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-------HHHHHHHh-C-CCCEEEEC
Confidence 567788888888889887765554444 3456777777889999986543221 1 333344 4 89999885
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 102 ~~ 103 (303)
T 3kke_A 102 SR 103 (303)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 221
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=57.24 E-value=52 Score=23.78 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
++..+.+.+.+.+.|+.++..-........+.+...+ +|.||+|.+...
T Consensus 267 ~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~gsp~~~ 315 (402)
T 1e5d_A 267 EKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISD--AGAVIVGSPTHN 315 (402)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCccC
Confidence 4455666666666787776654444444555544444 699999987543
No 222
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=57.01 E-value=13 Score=24.44 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=39.0
Q ss_pred HHHHHhcCceEEEEEeeCChhHHHHHHhhhcC--CcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 89 NTVARQKQIVVVMKIFWGDPREKICEAIDKIP--LSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~--~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
...+.+.|++++... .+....+++ +.+ +|.|++|...-..... .-.|+-.-.++ ++..+|++++-+
T Consensus 23 a~eL~~~gI~vtlI~--Dsa~~~~m~---~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 23 AYELVYDKIPSTLIT--DSSIAYRIR---TSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHHHHHTCCBEEBC--GGGHHHHHH---HCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHcCCCEEEEe--chHHHHHHH---hCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 444556799887532 333333333 344 8999999975322221 22466666555 455899999843
No 223
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=56.93 E-value=11 Score=22.43 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+.+.+.+++.|++++.+..... +...|-.. .-..+|+||+....
T Consensus 24 AAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~-~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 24 AAQALEEAAVEAGYEVKIETQGADGIQNRLTAQ-DIAEATIIIHSVAV 70 (111)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEETTEEESCCCHH-HHHHCSEEEEEESS
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHH-HHHhCCEEEEEeCC
Confidence 456677778888998877665532 22222211 11227888887763
No 224
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=56.90 E-value=42 Score=22.60 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++.. ..+++.....++|-||+..... . .. -..+....+||+++-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~-----~~-~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P-----QT-VQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H-----HH-HHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H-----HH-HHHHHHCCCCEEEEec
Confidence 5577778888888898877655545543 3566777777899999975532 1 12 2345567899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 225
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=56.43 E-value=14 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=19.9
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
.++.+++|+... ..+++.+-.+. ..+..++|-
T Consensus 6 ~~livAlD~~~~-~~a~~~~~~~~----~~~~~ikvg 37 (221)
T 3exr_A 6 PNLQVALDHSNL-KGAITAAVSVG----NEVDVIEAG 37 (221)
T ss_dssp CEEEEEECCSSH-HHHHHHHHHHG----GGCSEEEEC
T ss_pred CCEEEEeCCCCH-HHHHHHHHhhC----CCceEEEEC
Confidence 479999999763 44555555543 344455663
No 226
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=56.34 E-value=39 Score=22.03 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+. ++.++......+|+|++...-... ..+ .....+-....+||+++...
T Consensus 15 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvllD~~l~~~-~g~---~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 15 SLADPLAFLLRKEGFEAT---VVTDG-PAALAEFDRAGADIVLLDLMLPGM-SGT---DVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp HHHHHHHHHHHHTTCEEE---EECSH-HHHHHHHHHHCCSEEEEESSCSSS-CHH---HHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHHHHHCCCEEE---EECCH-HHHHHHHhccCCCEEEEECCCCCC-CHH---HHHHHHHcCCCCCEEEEeCC
Confidence 355566666666676543 22343 334455566679999998763221 111 24445555567999888543
No 227
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=56.27 E-value=18 Score=24.23 Aligned_cols=34 Identities=18% Similarity=-0.083 Sum_probs=26.8
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
.++|++++.++..+..+.+....|.+ .+ +|+++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~ 52 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVV 52 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEE
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEE
Confidence 47999999999988888888888865 44 776664
No 228
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=56.27 E-value=11 Score=22.38 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-ChhHHHHH-HhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-DPREKICE-AIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~-~a~~~~~dliVig~~~ 130 (164)
..+.+.+.+++.|++++.+.... .+...|-. ...+ +|+||+....
T Consensus 21 AaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d~ 67 (106)
T 2r48_A 21 AAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIRE--ADAIIIAADR 67 (106)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHH--CSEEEEEESS
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHh--CCEEEEEeCC
Confidence 34566677777888877766553 22222322 2333 7899987763
No 229
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=55.68 E-value=44 Score=22.42 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCceEEEEEee--C------ChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW--G------DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--g------~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+++.+.++..|++.....-. + ...+.|.+..++.++|+|+....
T Consensus 51 R~~E~~~A~~~lG~~~~~~l~~~D~~l~~~~~~~~~l~~~ir~~~P~~V~t~~~ 104 (227)
T 1uan_A 51 REKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAPLE 104 (227)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEECTTCCCCCHHHHHHHHHHHHHHCEEEEEEECS
T ss_pred HHHHHHHHHHhcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 4455566666678863221211 1 24677888999999999987654
No 230
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=55.58 E-value=33 Score=21.04 Aligned_cols=39 Identities=5% Similarity=-0.083 Sum_probs=27.1
Q ss_pred CCceEEEEeCCChh----hHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSAC----SKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~----~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
.||++++-+..+|. +..++++|..++.. +..+.++...+
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~~D 46 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-DQDVCVLFLDD 46 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-CCEEEEEECGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEEhH
Confidence 46789999987775 35678888777655 45777666655
No 231
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=55.52 E-value=39 Score=21.83 Aligned_cols=49 Identities=4% Similarity=-0.130 Sum_probs=29.9
Q ss_pred chHHHHHHHH-HHhcCceEEEEEeeCC-------------hhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTV-ARQKQIVVVMKIFWGD-------------PREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~g~-------------~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
+...+.+.+. +.+.|.+++..-+..- ....+.+...+ +|.||+|.+-..
T Consensus 19 ~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~--aD~ii~~sP~y~ 81 (197)
T 2vzf_A 19 AKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCN--ADGLIVATPIYK 81 (197)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHH--CCEEEEEeCccC
Confidence 5566666666 6666877766544332 13334444444 799999998543
No 232
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=55.15 E-value=44 Score=22.32 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEe--eCChhH--HHHHHhhhcC-CcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF--WGDPRE--KICEAIDKIP-LSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~--~I~~~a~~~~-~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
....+.+.+.+.+.|+++..... .++... ..++.....+ +|-||+......... .. -..+....+||++
T Consensus 16 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~-----~~-~~~~~~~~ipvV~ 89 (276)
T 3ksm_A 16 RQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLT-----PS-VAQYRARNIPVLV 89 (276)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTH-----HH-HHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHH-----HH-HHHHHHCCCcEEE
Confidence 55777788888888988765442 234433 3455555556 999999654222111 11 2345566899998
Q ss_pred EcCC
Q 031168 157 VKQG 160 (164)
Q Consensus 157 v~~~ 160 (164)
+...
T Consensus 90 ~~~~ 93 (276)
T 3ksm_A 90 VDSD 93 (276)
T ss_dssp ESSC
T ss_pred EecC
Confidence 8543
No 233
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=55.09 E-value=29 Score=20.24 Aligned_cols=72 Identities=8% Similarity=-0.027 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc--CCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN--GSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~--~~~pVlvv~~ 159 (164)
....+.+...+.+.|+.+.. ..+..+.+........+|+|++...-... .. -...+.+-.. ..+|++++..
T Consensus 17 ~~~~~~l~~~L~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 17 AVNREALILYLKSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQPE-SG---LDLIRTIRASERAALSIIVVSG 89 (136)
T ss_dssp HHHHHHHHHHHHHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCSSS-CH---HHHHHHHHTSTTTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCCCC-CH---HHHHHHHHhcCCCCCCEEEEeC
Confidence 34556677777777776543 33444444444444448999998763221 11 1234445443 4578888754
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 90 ~ 90 (136)
T 3hdv_A 90 D 90 (136)
T ss_dssp S
T ss_pred C
Confidence 4
No 234
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=54.90 E-value=24 Score=22.48 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh---cCCcEEEEee
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGN 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliVig~ 128 (164)
.+..-..+.+.+++.|.++.....-.|- +.|.+..++ .++|+||+..
T Consensus 25 ~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 25 EDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp -CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred eeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECC
Confidence 3556677778888889886655444444 666554332 3689998843
No 235
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=54.61 E-value=39 Score=21.58 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+...+...|+.+.. ...+. .+.++......+|+|++...-... .. -.....+-...+.||+++-.
T Consensus 23 ~~~~~~l~~~L~~~g~~v~~--~~~~~-~~al~~~~~~~~dlvi~D~~~p~~-~g---~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 23 ALIRMDLAEMLREEGYEIVG--EAGDG-QEAVELAELHKPDLVIMDVKMPRR-DG---IDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp HHHHHHHHHHHHHTTCEEEE--EESSH-HHHHHHHHHHCCSEEEEESSCSSS-CH---HHHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE--EeCCH-HHHHHHHhhcCCCEEEEeCCCCCC-Ch---HHHHHHHHhcCCCCEEEEec
Confidence 34556666667666765432 22333 334455556679999998763221 11 13445555555679888743
No 236
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=54.37 E-value=19 Score=24.48 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=29.2
Q ss_pred HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 111 KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 111 ~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
..++.+.+.+.|.|.+|.+.--.... +-.+...+-. .+.|+++.|...
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~--~~~~v~~ik~-~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDN--VLRMMSKVRR-FLVPCVLEVSAI 69 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHH--HHHHHHHHTT-SSSCEEEECSCG
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHH--HHHHHHHhhc-cCCCEEEeCCCH
Confidence 34555567789999999853111111 1233443434 789999998753
No 237
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=54.28 E-value=46 Score=22.32 Aligned_cols=69 Identities=9% Similarity=-0.045 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHH-HhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNY-VVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~-l~~~~~~pVlvv~ 158 (164)
....+.+.+.+.+.|+.+......++.. ..+++.....++|-||+... . ...-. .+.....||+++-
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~-----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 24 TLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N-----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G-----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C-----hHHHHHHHHcCCCCEEEEe
Confidence 5577788888888898877655445543 45667777778999999651 1 11123 4556689998885
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 238
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=54.16 E-value=19 Score=24.52 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=30.7
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
..++++...+.++|+|.+|-+.-......+ .....+-. ...|+++.+..
T Consensus 22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~~--~~v~~ir~-~~~Pivl~~y~ 70 (234)
T 2f6u_A 22 TDEIIKAVADSGTDAVMISGTQNVTYEKAR--TLIEKVSQ-YGLPIVVEPSD 70 (234)
T ss_dssp CHHHHHHHHTTTCSEEEECCCTTCCHHHHH--HHHHHHTT-SCCCEEECCSS
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHhcC-CCCCEEEecCC
Confidence 346777888889999999974222222221 34444433 67999988754
No 239
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=54.12 E-value=60 Score=23.59 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=39.6
Q ss_pred HHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHh-hcCCCcEEEEcC
Q 031168 89 NTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
...+.+.|++++... .+.+..+ .++.++|.|++|...-.... -.-+|+-.-.++ ++..+|++++-+
T Consensus 199 a~eL~~~GI~vtlI~--Dsa~~~~---M~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 199 CWELMEDGIDVTLIT--DSMVGIV---MQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHHHHTTCCEEEEC--GGGHHHH---HHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHhCCCCEEEEe--hhHHHHH---hhcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEEeCc
Confidence 444566799887532 2333333 34456899999997532222 122566555555 566899999843
No 240
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=54.04 E-value=29 Score=19.88 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~ 159 (164)
...+.+...+...|..+. ...+ ..+.++......+|++++...-.+. ... .....+-.. ..+|++++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~---~~~~-~~~a~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 13 PIREMVCFVLEQNGFQPV---EAED-YDSAVNQLNEPWPDLILLAWMLPGG-SGI---QFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp HHHHHHHHHHHHTTCEEE---EECS-HHHHHTTCSSSCCSEEEEESEETTE-EHH---HHHHHHHTSTTTTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCceEE---EeCC-HHHHHHHHhccCCCEEEEecCCCCC-CHH---HHHHHHHhCcccCCCCEEEEeC
Confidence 345566666666677543 2223 4445566667789999998753221 111 234444433 4688888743
No 241
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=53.69 E-value=8.5 Score=22.78 Aligned_cols=44 Identities=2% Similarity=0.029 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCceEEEEEeeC-ChhHHHH-HHhhhcCCcEEEEeecC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWG-DPREKIC-EAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~-~~a~~~~~dliVig~~~ 130 (164)
.+.+.+.+++.|++++.+.... .+...+- +... ++|+|++....
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~ 67 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVDT 67 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEESS
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEeccc
Confidence 4667777778899887766553 2222221 1222 37999998763
No 242
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=53.54 E-value=31 Score=20.01 Aligned_cols=68 Identities=10% Similarity=-0.017 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 160 (164)
..+.++..+. .+..+. ...+ .++.++......+|+|++...-... .. -.....+-.. ..+||+++...
T Consensus 16 ~~~~l~~~l~-~~~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 16 MRETLRLLLS-GEFDCT---TAAD-GASGLQQALAHPPDVLISDVNMDGM-DG---YALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHT-TTSEEE---EESS-HHHHHHHHHHSCCSEEEECSSCSSS-CH---HHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHHHh-CCcEEE---EECC-HHHHHHHHhcCCCCEEEEeCCCCCC-CH---HHHHHHHHhCCccCCCCEEEEeCC
Confidence 4455555555 565533 2233 3444556666789999998763221 11 1234444443 36889888654
No 243
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=53.33 E-value=50 Score=22.44 Aligned_cols=47 Identities=9% Similarity=-0.044 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCceE-EEEEe-eC------ChhHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVV-VMKIF-WG------DPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~~~~-~g------~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+++.+.++..|++. ...-. .+ ...+.|.+..++.++|+|+.....
T Consensus 53 R~~E~~~A~~~LGv~~~~~L~~~D~~~~~~~~~~~~l~~~ir~~~PdvV~t~~~~ 107 (242)
T 2ixd_A 53 RKEEAKVAARIMGVKTRLNLAMPDRGLYMKEEYIREIVKVIRTYKPKLVFAPYYE 107 (242)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECTTCCCCCHHHHHHHHHHHHHHCCSEEEEECSC
T ss_pred HHHHHHHHHHHcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4455566666678863 22211 11 246778888999999999876543
No 244
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=53.32 E-value=50 Score=22.41 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC--ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG--DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+..+.+.+.+.+.|..+......+ +....+.+.....++|-||+...... ... -..+....+||+++-.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~-~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 26 SQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-------DPR-VRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-------CHH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-------cHH-HHHHhhCCCCEEEECC
Confidence 5577778888888888766543333 23456777777778999988643211 112 2345567899988854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 98 ~ 98 (288)
T 3gv0_A 98 S 98 (288)
T ss_dssp C
T ss_pred c
Confidence 3
No 245
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=53.21 E-value=43 Score=21.63 Aligned_cols=38 Identities=8% Similarity=0.052 Sum_probs=23.6
Q ss_pred CceEEEEeCCC---hhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDFS---ACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~s---~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
|+|||+-.... ..+..+++++.+.+. .+.++.++.+.+
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~ 42 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDR 42 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSS
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCcc
Confidence 35777766433 235667777777665 567887776654
No 246
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=53.19 E-value=31 Score=19.93 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhc-CCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKI-PLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~-~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
....+.+...+...|+.+.. ..+. ++.++..... .+|+|++...-......+ .....+-.. ..+|++++-.
T Consensus 15 ~~~~~~l~~~L~~~g~~v~~---~~~~-~~a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~ 87 (132)
T 2rdm_A 15 AILLLDFESTLTDAGFLVTA---VSSG-AKAIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISG 87 (132)
T ss_dssp HHHHHHHHHHHHHTTCEEEE---ESSH-HHHHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEE---ECCH-HHHHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeC
Confidence 33556666667666775542 3343 4444555555 799999987632211111 234444433 3689888854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 88 ~ 88 (132)
T 2rdm_A 88 H 88 (132)
T ss_dssp S
T ss_pred C
Confidence 3
No 247
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=53.11 E-value=29 Score=24.07 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=25.8
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
.+|+|+++ ..+|..++..+..+ +.++.++|+....
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDtg~ 89 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDTGR 89 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECCSC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeCCC
Confidence 68999999 88888777777665 3457778876543
No 248
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=53.10 E-value=50 Score=22.66 Aligned_cols=37 Identities=8% Similarity=-0.055 Sum_probs=26.4
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
..++++|++++.-+|..++..+.... +..++.+++..
T Consensus 24 ~~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~ 60 (268)
T 1xng_A 24 GFKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMPS 60 (268)
T ss_dssp TCCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECCC
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeCC
Confidence 35789999999988887776665543 34677777653
No 249
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=53.07 E-value=29 Score=20.39 Aligned_cols=72 Identities=8% Similarity=0.024 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCc-cceecccchhHHHhhc-CCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK-LKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~-~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
....+.+...+...|+.+. ...+ .++.++..++..+|+|++...-... ... -.....+-.. ..+|++++..
T Consensus 16 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~D~~l~~~~~~g---~~~~~~l~~~~~~~~ii~~s~ 88 (136)
T 3kto_A 16 KDARAALSKLLSPLDVTIQ---CFAS-AESFMRQQISDDAIGMIIEAHLEDKKDSG---IELLETLVKRGFHLPTIVMAS 88 (136)
T ss_dssp HHHHHHHHHHHTTSSSEEE---EESS-HHHHTTSCCCTTEEEEEEETTGGGBTTHH---HHHHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHHHHHHCCcEEE---EeCC-HHHHHHHHhccCCCEEEEeCcCCCCCccH---HHHHHHHHhCCCCCCEEEEEc
Confidence 4456667777777776543 2233 3445556667789999998652220 111 1233444443 3688888865
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 89 ~ 89 (136)
T 3kto_A 89 S 89 (136)
T ss_dssp S
T ss_pred C
Confidence 4
No 250
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=52.98 E-value=33 Score=20.22 Aligned_cols=69 Identities=6% Similarity=0.047 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
..+.++..+...|..+. ...+ ..+.++......+|+|++...-... .. -...+.+-.. ..+|++++...
T Consensus 16 ~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvllD~~l~~~-~g---~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 16 LAILYKQYVKDEPYDIF---HVET-GRDAIQFIERSKPQLIILDLKLPDM-SG---EDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp HHHHHHHHTTTSSSEEE---EESS-HHHHHHHHHHHCCSEEEECSBCSSS-BH---HHHHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHHHhcCceEE---EeCC-HHHHHHHHHhcCCCEEEEecCCCCC-CH---HHHHHHHHhcCCCCCEEEEEec
Confidence 45566666666676542 2233 3444455566679999998763221 11 1234444433 45788887543
No 251
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=52.88 E-value=42 Score=21.42 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHH----HhhhcCCcEEEEe
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICE----AIDKIPLSCLVIG 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~----~a~~~~~dliVig 127 (164)
+..-..+.+.+++.|+++.....-+|-.+.|.+ .+.+.++|+||+.
T Consensus 27 D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 27 DTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred CccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 455566778888889987766555544444443 3333258999884
No 252
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=52.73 E-value=33 Score=20.16 Aligned_cols=69 Identities=7% Similarity=0.056 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~ 159 (164)
...+.+...+... . ... ...+. .+.++...+..+|+|++...-... .. -.....+-.. ..+|++++-.
T Consensus 14 ~~~~~l~~~l~~~-~--~v~-~~~~~-~~a~~~~~~~~~dlvi~D~~l~~~-~g---~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 14 FSRIELKNFLDSE-Y--LVI-ESKNE-KEALEQIDHHHPDLVILDMDIIGE-NS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHHHHHHHHHTTT-S--EEE-EESSH-HHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred HHHHHHHHHHHhc-c--eEE-EeCCH-HHHHHHHhcCCCCEEEEeCCCCCC-cH---HHHHHHHHcCcccCCCCEEEEec
Confidence 3455666666554 2 222 22343 444455566679999998763221 11 1344555544 4688888754
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 85 ~ 85 (140)
T 3n53_A 85 S 85 (140)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=52.69 E-value=57 Score=22.85 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=31.6
Q ss_pred ChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 107 DPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 107 ~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+.| .+.|++.++|-+.+-.+.......--+-..-..|...++.||++..
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 137 (293)
T 1f6k_A 84 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYS 137 (293)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444444 5678889999998887654322211111222346677789999874
No 254
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=52.42 E-value=59 Score=22.93 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.1
Q ss_pred hhHHHHHHhhhcCCcEEEE
Q 031168 108 PREKICEAIDKIPLSCLVI 126 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVi 126 (164)
..+.|.+..++.++|+|+.
T Consensus 117 ~~~~l~~~ir~~rP~vV~t 135 (303)
T 1q74_A 117 TVGALVAIIRELRPHVVVT 135 (303)
T ss_dssp HHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3466778889999998886
No 255
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=52.30 E-value=46 Score=21.70 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhh---hcCCcEEEEee
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAID---KIPLSCLVIGN 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~~~~dliVig~ 128 (164)
.+..-..+.+.+++.|.++.....-.|-.+.|.+..+ ..++|+||+..
T Consensus 47 ~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 47 EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 4566777888888899987766555554444444322 24689998843
No 256
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=52.06 E-value=35 Score=20.19 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 158 (164)
....+.+...+...|..+... ...+. ++.++......+|+|++...-.. ... -.....+-. ...+|++++.
T Consensus 15 ~~~~~~l~~~L~~~~~~~~v~-~~~~~-~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 15 PDDIALIRRVLDRKDIHCQLE-FVDNG-AKALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE-EESSH-HHHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeeEE-EECCH-HHHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEe
Confidence 345667777777777764432 22333 44455666778999999876322 111 123444443 2468898886
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 89 ~~ 90 (144)
T 3kht_A 89 DN 90 (144)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 257
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=51.92 E-value=69 Score=23.61 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+-++.+.+.+++.|+.+-+.+..-...+.+ .+. +|.+=||++.-..+. ... -+....+||++=+.
T Consensus 192 ~egl~~L~~~~~~~Gl~~~te~~d~~~~~~l----~~~-vd~lkIgs~~~~n~~------LL~-~~a~~gkPVilk~G 257 (385)
T 3nvt_A 192 LEGLKILKRVSDEYGLGVISEIVTPADIEVA----LDY-VDVIQIGARNMQNFE------LLK-AAGRVDKPILLKRG 257 (385)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSGGGHHHH----TTT-CSEEEECGGGTTCHH------HHH-HHHTSSSCEEEECC
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCHHHHHHH----Hhh-CCEEEECcccccCHH------HHH-HHHccCCcEEEecC
Confidence 4566888899999999988766554433333 334 788888877433221 112 23345677766543
No 258
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=51.64 E-value=35 Score=22.59 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhcCc--eEEEEEeeCChhHH--------------HHHHh-------hhcCCcEEEEeecC
Q 031168 82 PETLDIVNTVARQKQI--VVVMKIFWGDPREK--------------ICEAI-------DKIPLSCLVIGNRG 130 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~--------------I~~~a-------~~~~~dliVig~~~ 130 (164)
.+..+.+++.+++.|+ .-...+..|+..+. +-+++ ....+|+|+|....
T Consensus 61 ~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k 132 (202)
T 3cvo_A 61 RAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF 132 (202)
T ss_dssp HHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC
Confidence 5567777888888887 44555666664322 22222 22458999998763
No 259
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=51.51 E-value=17 Score=25.94 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=43.2
Q ss_pred HHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 91 VARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.+++.+.-+-..-..+ ....++++.|++.+..+|+--+.+........+......+..+..+||.+--
T Consensus 21 ~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLHl 89 (306)
T 3pm6_A 21 FARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLHL 89 (306)
T ss_dssp HHHHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEEc
Confidence 3445566655544455 7799999999999999888765432221111122344556778899997653
No 260
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=51.21 E-value=10 Score=22.40 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-ChhHHHHH-HhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-DPREKICE-AIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~-~a~~~~~dliVig~~~ 130 (164)
..+.+.+.+++.|++++.+.... .+...|-. ...+ +|+||+....
T Consensus 21 AaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d~ 67 (106)
T 2r4q_A 21 AADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIED--APAIIVAADK 67 (106)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHH--CSCEEEEESS
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHh--CCEEEEEeCC
Confidence 34566666777788877765543 22222222 2333 6888887663
No 261
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=51.06 E-value=72 Score=23.54 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=40.1
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
+...+.+.|++++... .+.+..+ .++.++|.|++|...-..... .-+|+-.-.++ ++..+|++++-+
T Consensus 229 tA~eL~~~GIpvtlI~--Dsa~~~~---M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 229 TVYECVQEDIPCTLIC--DGAASSL---MLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHHHHTTCCEEEEC--GGGHHHH---HHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHcCCCEEEEe--hhHHHHH---hhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCC
Confidence 3444566799887532 3333333 334568999999975322221 12465555555 566899999843
No 262
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=50.80 E-value=56 Score=22.26 Aligned_cols=71 Identities=4% Similarity=0.084 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
.+.++.+.+.+.+.|..+......+ .....+.+.....++|-||+....... ..-..+....+||+++-..
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECCC
Confidence 5577778888888898876654443 345667788888889999986543221 1223456678999988543
No 263
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=50.26 E-value=57 Score=22.21 Aligned_cols=71 Identities=8% Similarity=0.034 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+-+.+.+.+.|+++...-. ++... ..++.....++|-||+......... ... ..+....+||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 18 QTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGS-----AIV-AKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHH-----HHH-HHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhH-----HHH-HHHHHCCCcEEEeCC
Confidence 45667777778888887654332 35433 3455555667999998764322111 112 235566899998863
No 264
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=49.78 E-value=72 Score=23.20 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh--c-CCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN--N-GSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~--~-~~~pVlvv 157 (164)
++..+.+.+.+.+.|++++..-........+.+...+ +|.||+|.+-........+-+..+.+.. . ...|+.++
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~--~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~ 347 (414)
T 2q9u_A 271 HRMALALLDGARSTGCETVLLEMTSSDITKVALHTYD--SGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAF 347 (414)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHT--CSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHh--CCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEE
Confidence 5566667777766787776654444333444444444 7999999985543222122233333322 1 45676655
No 265
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=49.78 E-value=68 Score=22.88 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=47.8
Q ss_pred EEEEeCC-----ChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 7 VGVAVDF-----SACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 7 ILv~~d~-----s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|||-.+- ++.+..++..|.+|+. +++++.+-+.
T Consensus 4 ~lv~~e~~~g~l~~~~~eal~aA~~La~----~V~av~~G~~-------------------------------------- 41 (315)
T 1efv_A 4 TLVIAEHANDSLAPITLNTITAATRLGG----EVSCLVAGTK-------------------------------------- 41 (315)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHTTTS----EEEEEEEESC--------------------------------------
T ss_pred EEEEEEccCCCcCHHHHHHHHHHHHhcC----cEEEEEECCc--------------------------------------
Confidence 7776653 3457788888888873 7777765532
Q ss_pred chHHHHHHHHHHhcCceEEEEEee----C----ChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW----G----DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----g----~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.+...|.+--..+.. + ..+..|.+.+++.++|+|++|..
T Consensus 42 --~~~~~~~a~~a~GaDkv~~v~d~~l~~~~~~~~a~~La~li~~~~pdlVL~g~t 95 (315)
T 1efv_A 42 --CDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGAS 95 (315)
T ss_dssp --CHHHHHHHHHSTTCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred --hHHHHHHHHHhcCCCEEEEecCchhccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1123333334457653333322 1 12456677777778899999875
No 266
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=49.59 E-value=55 Score=21.92 Aligned_cols=48 Identities=8% Similarity=-0.086 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
..+.+.+.+.+++.|.+++..-+.. .-.+...+...+ +|.||++.+-.
T Consensus 46 ~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~--aD~iv~~~P~y 94 (218)
T 3rpe_A 46 LTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLW--ADTIIYQMPAW 94 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHH--CSEEEEEEECB
T ss_pred HHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHh--CCEEEEECChH
Confidence 4566777777777788887766553 333444455555 79999998743
No 267
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=49.58 E-value=34 Score=19.32 Aligned_cols=70 Identities=7% Similarity=-0.036 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+..+.+ ......++|++++...-... ..+ ...+.+-....+|++++...
T Consensus 12 ~~~~~l~~~l~~~~~~v~---~~~~~~~~~-~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~ii~~s~~ 81 (121)
T 1zh2_A 12 AIRRFLRTALEGDGMRVF---EAETLQRGL-LEAATRKPDLIILDLGLPDG-DGI---EFIRDLRQWSAVPVIVLSAR 81 (121)
T ss_dssp HHHHHHHHHHHTTTCEEE---EESSHHHHH-HHHHHHCCSEEEEESEETTE-EHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEE---EeCCHHHHH-HHHhcCCCCEEEEeCCCCCC-cHH---HHHHHHHhCCCCcEEEEECC
Confidence 345566666666676532 233444444 34445579999998653221 111 23444544456888887543
No 268
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=49.14 E-value=21 Score=25.19 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=46.2
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEcC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+.+++.+.-+-..-..+ ....++++.|++.+..+|+-.+.+...... ..+......+..+.++||.+--+
T Consensus 11 ~~A~~~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValHlD 82 (286)
T 1gvf_A 11 QDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLD 82 (286)
T ss_dssp HHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEE
T ss_pred HHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 33445566554444444 789999999999999998877664322111 22346777788888999877543
No 269
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=48.81 E-value=29 Score=23.63 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig~~ 129 (164)
.++++++...+.|.++... ..|.+...-...+.+ .++|.+|+|+.
T Consensus 173 ki~~lr~~~~~~~~~~~I~-vdGGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 173 RVIQVEKRLGNRRVEKLIN-IDGSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHHGGGGGGCEEE-EESSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHHhcCCCceEE-EECCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 3445555555555555543 345554444445556 78999999975
No 270
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=48.14 E-value=27 Score=22.58 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=30.1
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
..+.+++.++.|..+...++ +++.|+..|+++.++.-.
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEECC
Confidence 34679999999998887776 667888999998777543
No 271
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=47.98 E-value=23 Score=25.00 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=46.6
Q ss_pred HHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc--ceecccchhHHHhh--cCCCcEEEEcC
Q 031168 89 NTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL--KRAIMGSVSNYVVN--NGSCPVTVVKQ 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~--~~~~~gs~~~~l~~--~~~~pVlvv~~ 159 (164)
-+.+++.+.-+-..-..+ ....++++.|++.+..+|+-.+.+.... ....+......+.. ++..||.+--+
T Consensus 13 l~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValHlD 88 (288)
T 3q94_A 13 LNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLD 88 (288)
T ss_dssp HHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEECC
Confidence 334445566655544445 7799999999999999988766543222 11134556677778 88999987533
No 272
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=47.79 E-value=50 Score=20.82 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK 133 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~ 133 (164)
++..+.++..+... -.+......| -.++++++.++|.+|.|-+.-+.
T Consensus 49 ~eR~~ml~~a~~~~-~~v~v~~~~~----l~~~~~~~~~~~~ivrG~r~~~D 95 (157)
T 3nv7_A 49 DERLKMIQLATKSF-KNVECVAFEG----LLAYLAKEYHCKVLVRGLRVVSD 95 (157)
T ss_dssp HHHHHHHHHHHTTS-TTEEEEEECS----CHHHHHHHTTCCCBCCCCSCCCC
T ss_pred HHHHHHHHHHhcCC-CcEEEEecCc----hHHHHHHHcCCCEEEECCcccch
Confidence 44556666555432 1233322333 35678999999999999665443
No 273
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=47.76 E-value=54 Score=21.22 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLK 135 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~ 135 (164)
++..+.++..+... -+++....+| -+++++++.+++.+|.|-+..+.+.
T Consensus 68 eeR~~mv~~a~~~~-~~v~V~~~e~----l~vd~~~~~~a~~ivrGlr~~~Dfe 116 (177)
T 3nbk_A 68 DERIAMVKESTTHL-PNLRVQVGHG----LVVDFVRSCGMTAIVKGLRTGTDFE 116 (177)
T ss_dssp HHHHHHHHHHCTTC-TTEEEEECCS----CHHHHHHHTTCCEEEEEECTTCCHH
T ss_pred HHHHHHHHHHhCCC-CCEEEEecCc----hHHHHHHHcCCCEEEECCCchhHHH
Confidence 45566666555432 1233323332 4678889999999999988666554
No 274
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=47.56 E-value=68 Score=22.31 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=37.5
Q ss_pred HHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC---CccceecccchhHH-HhhcCCCcEEEEcC
Q 031168 89 NTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL---GKLKRAIMGSVSNY-VVNNGSCPVTVVKQ 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~---~~~~~~~~gs~~~~-l~~~~~~pVlvv~~ 159 (164)
...+.+.|++++... .+....++ + ++|.+++|..+- +.+-.. .|...-. +.++..+|++++-+
T Consensus 153 a~~L~~~gI~vtli~--dsa~~~~m---~--~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~vp~~V~a~ 219 (276)
T 1vb5_A 153 ARELEFSGIEFEVIT--DAQMGLFC---R--EASIAIVGADMITKDGYVVNK-AGTYLLALACHENAIPFYVAAE 219 (276)
T ss_dssp HHHHHHTTCCEEEEC--GGGHHHHH---T--TCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHCCCCEEEEc--HHHHHHHH---c--cCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcCCCEEEecc
Confidence 333445788887643 33333333 2 589999999853 223333 4544444 44567899999854
No 275
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.48 E-value=62 Score=21.83 Aligned_cols=71 Identities=7% Similarity=0.089 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|..+......++. ...+++.....++|-||+...... .-.-..+....+||+++-.
T Consensus 29 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 29 PEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEECC
Confidence 557777888888888876553322322 345677777788999998543211 1122345567899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 101 ~ 101 (292)
T 3k4h_A 101 P 101 (292)
T ss_dssp C
T ss_pred C
Confidence 3
No 276
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=47.39 E-value=39 Score=19.39 Aligned_cols=69 Identities=12% Similarity=0.011 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
..+.++..+...|..+.. ..+ ..+.++......+|++++...-.+. ... ...+.+-.. ..+|++++...
T Consensus 15 ~~~~l~~~l~~~~~~v~~---~~~-~~~~~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 15 VRKSLAFMLTMNGFAVKM---HQS-AEAFLAFAPDVRNGVLVTDLRMPDM-SGV---ELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp HHHHHHHHHHHTTCEEEE---ESC-HHHHHHHGGGCCSEEEEEECCSTTS-CHH---HHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHHHhCCcEEEE---eCC-HHHHHHHHhcCCCCEEEEECCCCCC-CHH---HHHHHHHhcCCCCCEEEEECC
Confidence 455566666666765432 233 4555666677789999998763221 111 233444433 46899888544
No 277
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=47.37 E-value=41 Score=19.75 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhh-hcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAID-KIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~-~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
....+.+...+...|..+. ...+..+.+..... ...+|+|++...-.. ...+ ...+.+-.. ..+||+++-.
T Consensus 13 ~~~~~~l~~~l~~~g~~v~---~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 13 STILQNIKFLLEIDGNEVL---TASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGM---DILREIKKITPHMAVIILTG 85 (143)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCceEE---EeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEEC
Confidence 3455667777777776433 22344444433332 567999999876332 1111 234444443 3588888755
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 86 ~ 86 (143)
T 3jte_A 86 H 86 (143)
T ss_dssp T
T ss_pred C
Confidence 4
No 278
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=47.24 E-value=54 Score=21.04 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=26.8
Q ss_pred CchHHHHHHHHHH---hcCceEEEEEeeCChhHHHH----HHhhhcCCcEEEEee
Q 031168 81 DPETLDIVNTVAR---QKQIVVVMKIFWGDPREKIC----EAIDKIPLSCLVIGN 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~I~----~~a~~~~~dliVig~ 128 (164)
.+..-..+.+.++ +.|+++.. ..-+|-.+.|. +.+...++|+||+..
T Consensus 23 ~Dsn~~~l~~~l~~l~~~G~~v~~-~iv~Dd~~~I~~~l~~~~~~~~~DlVittG 76 (178)
T 2pbq_A 23 EDISGKAIIDYLKDVIITPFEVEY-RVIPDERDLIEKTLIELADEKGCSLILTTG 76 (178)
T ss_dssp CCHHHHHHHHHHHHHBCSCCEEEE-EEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred ecchHHHHHHHHHHHHhCCCEEEE-EEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3445556666666 78988843 34444434333 333322689998843
No 279
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=47.18 E-value=45 Score=20.15 Aligned_cols=72 Identities=6% Similarity=-0.001 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhc--CCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKI--PLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 158 (164)
....+.+...+.+.|+.+.. ...+..+ .++...+. .+|+|++...-.. ...+ ...+.+-.. ..+||+++-
T Consensus 46 ~~~~~~l~~~L~~~g~~v~~--~~~~~~~-al~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls 118 (157)
T 3hzh_A 46 VFTVKQLTQIFTSEGFNIID--TAADGEE-AVIKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMIS 118 (157)
T ss_dssp HHHHHHHHHHHHHTTCEEEE--EESSHHH-HHHHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEE--EECCHHH-HHHHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEe
Confidence 45667777777777766521 2334433 34444444 6899999876332 1111 234444443 358888876
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 119 ~~ 120 (157)
T 3hzh_A 119 AL 120 (157)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 280
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=46.90 E-value=40 Score=19.47 Aligned_cols=73 Identities=8% Similarity=-0.018 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~ 158 (164)
....+.++..+.+.|.... ....+..+.+........+|+|++...-.. ... -...+.+-.. ..+||+++.
T Consensus 15 ~~~~~~l~~~L~~~g~~~v--~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~-~~g---~~~~~~lr~~~~~~~~pii~~s 88 (129)
T 3h1g_A 15 STMRRIIKNTLSRLGYEDV--LEAEHGVEAWEKLDANADTKVLITDWNMPE-MNG---LDLVKKVRSDSRFKEIPIIMIT 88 (129)
T ss_dssp HHHHHHHHHHHHHTTCCCE--EEESSHHHHHHHHHHCTTCCEEEECSCCSS-SCH---HHHHHHHHTSTTCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEE--EEeCCHHHHHHHHHhCCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCCCeEEEEe
Confidence 3455666777777776421 223455555554544456899999765322 111 1234444432 358998886
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 89 ~~ 90 (129)
T 3h1g_A 89 AE 90 (129)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 281
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=46.88 E-value=22 Score=17.12 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=19.5
Q ss_pred eEEEEEeeC-ChhHHHHHHhhhcCCcE
Q 031168 98 VVVMKIFWG-DPREKICEAIDKIPLSC 123 (164)
Q Consensus 98 ~~~~~~~~g-~~~~~I~~~a~~~~~dl 123 (164)
.+..+.+.. +..++|+++|++.+.|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 455666555 77899999999987764
No 282
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=46.68 E-value=35 Score=22.12 Aligned_cols=17 Identities=6% Similarity=0.042 Sum_probs=7.8
Q ss_pred HHHHHhhhcCCcEEEEe
Q 031168 111 KICEAIDKIPLSCLVIG 127 (164)
Q Consensus 111 ~I~~~a~~~~~dliVig 127 (164)
.+++.+.+.++|+||+.
T Consensus 23 ~~~~~~~~~~~D~vi~~ 39 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALI 39 (228)
T ss_dssp HHHTHHHHHTCSEEEEE
T ss_pred HHHHHHhhcCCCEEEEC
Confidence 34444444445555543
No 283
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=46.45 E-value=38 Score=25.60 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=32.1
Q ss_pred CceEEEEEeeCChhHHHHHH--hhhcCCcEEEEeec-CCCccceeccc
Q 031168 96 QIVVVMKIFWGDPREKICEA--IDKIPLSCLVIGNR-GLGKLKRAIMG 140 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~--a~~~~~dliVig~~-~~~~~~~~~~g 140 (164)
..-+.+.+..|+..+.|.+. |..+++|.|.+-+. +.|.+.-...|
T Consensus 150 ~p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~G 197 (516)
T 1xrs_A 150 GPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYG 197 (516)
T ss_dssp SCEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCS
T ss_pred CCEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCC
Confidence 33467778889999999864 88899999988654 44544444444
No 284
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=46.15 E-value=55 Score=21.10 Aligned_cols=47 Identities=9% Similarity=-0.051 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhcCceEEEEE-eeCC------hhHHHHHHhhhcCCcEEEEee
Q 031168 82 PETLDIVNTVARQKQIVVVMKI-FWGD------PREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~g~------~~~~I~~~a~~~~~dliVig~ 128 (164)
-++-..+++.+++.|+++++.. +.++ ...+-.+.|.+.++|++|-=+
T Consensus 32 l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH 85 (180)
T 3qay_A 32 KSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELH 85 (180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEee
Confidence 3455677778888898864443 3332 255667788999999988743
No 285
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=46.08 E-value=66 Score=21.67 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEe--eCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF--WGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+.+.+.+.+.|.++..... .++.. ..+++.....++|-||+......... ...+ .+....+||+++
T Consensus 23 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~-----~~~~-~~~~~~iPvV~~ 96 (289)
T 3brs_A 23 SVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTY-----DAAK-EIKDAGIKLIVI 96 (289)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTH-----HHHT-TTGGGTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhH-----HHHH-HHHHCCCcEEEE
Confidence 44667777778788877665433 23443 34556556678999988654322111 1112 233467898888
Q ss_pred cC
Q 031168 158 KQ 159 (164)
Q Consensus 158 ~~ 159 (164)
-.
T Consensus 97 ~~ 98 (289)
T 3brs_A 97 DS 98 (289)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 286
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=45.97 E-value=23 Score=26.08 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCCh----hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDP----REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
..+++.+.+.+ |+.+.+....|++ .+.+.+.+++.++|.|| |-.+-+ ..+.+..+......|++.||-
T Consensus 67 ~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~II-avGGGs------~~D~AK~iA~~~~~p~i~IPT 138 (387)
T 3uhj_A 67 LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILV-GVGGGK------TADTAKIVAIDTGARIVIAPT 138 (387)
T ss_dssp HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEE-EESSHH------HHHHHHHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEE-EeCCcH------HHHHHHHHHHhcCCCEEEecC
Confidence 55666777777 8877444455533 55666777888899764 333211 134555555566889888885
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 139 T 139 (387)
T 3uhj_A 139 I 139 (387)
T ss_dssp S
T ss_pred c
Confidence 3
No 287
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=45.74 E-value=63 Score=21.41 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHhcCceEEEE-EeeCChhHHHHHHhhhcCCcEEEEeec-CCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 81 DPETLDIVNTVARQKQIVVVMK-IFWGDPREKICEAIDKIPLSCLVIGNR-GLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dliVig~~-~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++.++.+.+.+++.|++.-.. -..|..+....+.. .+..+|++..+ +-..-..+-+..-..+-+.....+|+.-.
T Consensus 28 T~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~t 105 (201)
T 1vp8_A 28 TEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQS 105 (201)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEe
Confidence 3667888888888888873332 23366666666655 45789999875 22223334456666667777777777543
No 288
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=45.68 E-value=50 Score=20.20 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+...+...+-. .......+. .+.++...+..+|+|++...-... .. -.....+-...++|++++-.
T Consensus 35 ~~~~~~l~~~L~~~~~~-~~v~~~~~~-~~al~~l~~~~~dlvilD~~l~~~-~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 35 AFMRMVLKDIIDSQPDM-KVVGFAKDG-LEAVEKAIELKPDVITMDIEMPNL-NG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp HHHHHHHHHHHHTSTTE-EEEEEESSH-HHHHHHHHHHCCSEEEECSSCSSS-CH---HHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHHHHHhcCCCe-EEEEecCCH-HHHHHHhccCCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCceEEEEec
Confidence 34556667767665422 111123344 444455556679999998763221 11 13445555566788888754
No 289
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=45.67 E-value=68 Score=21.74 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHH---HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REK---ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~---I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
....+.+.+.+++.|..+......++. ... +++.....++|-||+...... . ...+ .+....+||++
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~ 95 (290)
T 2rgy_A 24 GTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLD-ELHRMHPKMVF 95 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHH-HHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHH-HHhhcCCCEEE
Confidence 456677777788888876543333333 233 566666778999888643221 1 1223 23446789888
Q ss_pred EcC
Q 031168 157 VKQ 159 (164)
Q Consensus 157 v~~ 159 (164)
+..
T Consensus 96 ~~~ 98 (290)
T 2rgy_A 96 LNR 98 (290)
T ss_dssp ESS
T ss_pred Ecc
Confidence 854
No 290
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=45.47 E-value=61 Score=21.11 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHh---cCceEEEEEeeCChhHHHHH----HhhhcCCcEEEEee
Q 031168 82 PETLDIVNTVARQ---KQIVVVMKIFWGDPREKICE----AIDKIPLSCLVIGN 128 (164)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~I~~----~a~~~~~dliVig~ 128 (164)
+..-..+.+.+++ .|.++.....-+|-.+.|.+ .+.+.++|+||+..
T Consensus 33 D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 33 DRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp CHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred chHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcC
Confidence 4555667777776 68877665555544444443 33323689998843
No 291
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=45.46 E-value=39 Score=18.91 Aligned_cols=69 Identities=4% Similarity=0.032 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
...+.+...+...|..+. ...+ .++.++......+|++++...-.. ... -...+.+-.. ..+|++++..
T Consensus 12 ~~~~~l~~~l~~~~~~v~---~~~~-~~~a~~~~~~~~~dlvl~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 12 NIRELLKEELQEEGYEID---TAEN-GEEALKKFFSGNYDLVILDIEMPG-ISG---LEVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESS-HHHHHHHHHHSCCSEEEECSCCSS-SCH---HHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEE---EeCC-HHHHHHHHhcCCCCEEEEECCCCC-CCH---HHHHHHHHccCCCCeEEEEEC
Confidence 345566666666676543 2233 344455556677999999876322 111 1234444433 3578887754
No 292
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=45.38 E-value=51 Score=22.14 Aligned_cols=48 Identities=4% Similarity=-0.015 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
...++.+++.+...|+.-...+..|+..+.+-.......+|+|++...
T Consensus 98 ~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~ 145 (248)
T 3tfw_A 98 AHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDAD 145 (248)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCc
Confidence 456677777777767653344566777665554433346899998543
No 293
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=45.36 E-value=39 Score=26.45 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 158 (164)
-+..+...++..|.++...- ..-+.+.|++.++++++|+|.+......... .+..+.+.+-.. ..+||++--
T Consensus 114 G~~iva~~L~~~G~eVi~LG-~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVGG 186 (579)
T 3bul_A 114 GKNIVGVVLQCNNYEIVDLG-VMVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIGG 186 (579)
T ss_dssp HHHHHHHHHHTTTCEEEECC-SSBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEEc
Confidence 45566677788888764321 1267999999999999999999775322211 123344444332 358887653
No 294
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=45.34 E-value=79 Score=22.40 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-. +..+.| .+.|++.++|-+.+-.+.......--+=..-..|...++.||++..
T Consensus 70 vi~~~~~~~~-grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 70 VATRVTELVN-GRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp HHHHHHHHHT-TSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHhC-CCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444332 24555544444 555554 5678899999999987654332211111222457778899999875
No 295
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=45.33 E-value=83 Score=22.64 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
++..+.+.+.+.+.|++++..-........+.+...+ +|.||+|.+...
T Consensus 266 ~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~g~p~y~ 314 (398)
T 1ycg_A 266 EKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILD--ARAVLVGSPTIN 314 (398)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHH--CSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCccC
Confidence 4455666666666787776654444444555555555 699999987543
No 296
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=45.32 E-value=44 Score=19.45 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~ 160 (164)
....+.+...+...+..+.. ..+. ++.++..++..+|+|++...-... .. -.....+-... .+|++++...
T Consensus 17 ~~~~~~l~~~L~~~~~~v~~---~~~~-~~a~~~l~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 17 TDAREWLSTIISNHFPEVWS---AGDG-EEGERLFGLHAPDVIITDIRMPKL-GG---LEMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHHHHTTCSCEEE---ESSH-HHHHHHHHHHCCSEEEECSSCSSS-CH---HHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhcCcEEEE---ECCH-HHHHHHHhccCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCCCcEEEEecC
Confidence 34556666777665654332 2233 444555566679999998763221 11 12344444433 5788877544
No 297
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=45.30 E-value=70 Score=21.79 Aligned_cols=67 Identities=7% Similarity=0.038 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+.+.+.+.+.|..+......++. ...+++.....++|-||+....... .-..+....+||+++-
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---------~~~~~~~~~iPvV~~~ 99 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---------VDPESGDVSIPTVMIN 99 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---------CCCCCTTCCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---------HHHHHHhCCCCEEEEC
Confidence 68888888899899887765544444 3456677777789999886542111 1123445678888774
No 298
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=45.29 E-value=70 Score=21.78 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+...... ...-..+....+||+++-.
T Consensus 28 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 28 INVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEECC
Confidence 557777888888888876543333332 345677777788999998643211 1122345667899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 100 ~ 100 (295)
T 3hcw_A 100 P 100 (295)
T ss_dssp C
T ss_pred C
Confidence 3
No 299
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=45.01 E-value=43 Score=19.29 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=26.1
Q ss_pred ceEEEEeCCC----hhhHHHHHHHHhhcccCCC-EEEEEEEecC
Q 031168 5 RRVGVAVDFS----ACSKKALQWAADNVVRNGD-HLILVTVVPE 43 (164)
Q Consensus 5 ~~ILv~~d~s----~~~~~~l~~a~~la~~~~~-~l~~l~v~~~ 43 (164)
+|+++-+..+ +....++++|..++...+. ++.++...+.
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dg 45 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDA 45 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchH
Confidence 5677777654 3456778888887755355 8877766553
No 300
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=44.81 E-value=35 Score=23.08 Aligned_cols=46 Identities=9% Similarity=0.177 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEe-ec
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG-NR 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig-~~ 129 (164)
+..+.+++...+.|.++...+ .|.+...-...+.+.++|.+|+| +.
T Consensus 152 ~kI~~lr~~~~~~~~~~~I~V-dGGI~~~~~~~~~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 152 DKLAELKAWREREGLEYEIEV-DGSCNQATYEKLMAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHHHHTCCCEEEE-ESCCSTTTHHHHHHHTCCEEEECTTT
T ss_pred HHHHHHHHHHhccCCCceEEE-ECCcCHHHHHHHHHcCCCEEEEccHH
Confidence 344566666665666655544 44443333444455579999999 54
No 301
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=44.78 E-value=46 Score=19.50 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~ 159 (164)
...+.+...+...|..+. ...+. .+.++......+|+|++...-... ..+ ...+.+-.. ..+||+++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPI---TAFSG-EECLEALNATPPDLVLLDIMMEPM-DGW---ETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHSCCSEEEEESCCSSS-CHH---HHHHHHHHSTTTTTSCEEEEES
T ss_pred HHHHHHHHHHHHcCceEE---EeCCH-HHHHHHHhccCCCEEEEeCCCCCC-CHH---HHHHHHHcCcccCCCCEEEEEC
Confidence 355566666666676543 23343 444455566779999998763221 111 234444332 3588988754
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 86 ~ 86 (138)
T 3c3m_A 86 K 86 (138)
T ss_dssp S
T ss_pred C
Confidence 3
No 302
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=44.64 E-value=82 Score=22.35 Aligned_cols=108 Identities=7% Similarity=-0.009 Sum_probs=59.1
Q ss_pred CCCceEEEEeCCChh-hHHHHHHHHhhcccC------CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhh
Q 031168 2 DGTRRVGVAVDFSAC-SKKALQWAADNVVRN------GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMK 74 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~-~~~~l~~a~~la~~~------~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (164)
+..|++|-.-|++.. -...++.|..+-... ..+..+.-..+++
T Consensus 7 ~~~rhlls~~dls~~ei~~ll~~A~~lk~~~~~~~~L~gk~~~~lF~e~S------------------------------ 56 (301)
T 2ef0_A 7 TLPKDLLDFSGYGPKELQALLDLAEQLKRERYRGEDLKGKVLALLFEKPS------------------------------ 56 (301)
T ss_dssp CCCSCBSSSTTCCHHHHHHHHHHHHHHHHHTCCCCTTTTCEEEEEESSCC------------------------------
T ss_pred cccCCCcchhhCCHHHHHHHHHHHHHHHhccccCCCCCCCEEEEEeccCC------------------------------
Confidence 456777777788764 567888888875322 2222222222221
Q ss_pred hhcCCCCchHHHHHHHHHHhcCceEEEEEeeC---ChhHHHHHH---hhhcCCcEEEEeecCCCccceecccchhHHHhh
Q 031168 75 KYGAKPDPETLDIVNTVARQKQIVVVMKIFWG---DPREKICEA---IDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN 148 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~---a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~ 148 (164)
-+..-.|.....+.|..+...-..+ .-.+.|.+. .... +|.||+-.... ...+.+..
T Consensus 57 -------TRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~la~ 119 (301)
T 2ef0_A 57 -------LRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERF-VEGIAARVFRH---------ETVEALAR 119 (301)
T ss_dssp -------HHHHHHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHH
T ss_pred -------cchHHHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHH
Confidence 2333444555556677654442221 122334443 3344 79999966532 34566888
Q ss_pred cCCCcEEE
Q 031168 149 NGSCPVTV 156 (164)
Q Consensus 149 ~~~~pVlv 156 (164)
++.+||+=
T Consensus 120 ~~~vPVIN 127 (301)
T 2ef0_A 120 HAKVPVVN 127 (301)
T ss_dssp HCSSCEEE
T ss_pred HCCCCEEe
Confidence 89999863
No 303
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=44.56 E-value=68 Score=21.44 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHhc-CceEEEEEeeC------------------------ChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQK-QIVVVMKIFWG------------------------DPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~g------------------------~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
..+.+.+.+.+.+. |.+++..-+.. +....+.+...+ +|.||+|.+-..
T Consensus 18 ~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~--AD~iI~~sP~y~ 91 (242)
T 1sqs_A 18 LEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLE--SDIIIISSPVYL 91 (242)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHH--CSEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHH--CCEEEEEccccc
Confidence 44556666666665 77776543221 233445555555 799999998543
No 304
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=44.55 E-value=57 Score=20.54 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=44.1
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHH---hhhcCCcEEEEeecCCCccceecccch-hHHHhhcCCCcE
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEA---IDKIPLSCLVIGNRGLGKLKRAIMGSV-SNYVVNNGSCPV 154 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dliVig~~~~~~~~~~~~gs~-~~~l~~~~~~pV 154 (164)
...+...+.+++.+.+.|++++..- .+-..+|++. |...+.|-||+.....+. .|+ ....+....+|+
T Consensus 24 ~tl~di~~~l~~~a~~~g~~v~~~Q--SN~EgeLId~Ih~a~~~~~dgiIINpgA~TH------tSvAlrDAl~~v~~P~ 95 (149)
T 2uyg_A 24 TTLEELEALCEAWGAELGLGVVFRQ--TNYEGQLIEWVQQAHQEGFLAIVLNPGALTH------YSYALLDAIRAQPLPV 95 (149)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEE--CSCHHHHHHHHHHTTTTTCSEEEEECGGGGG------TCHHHHHHHHTSCSCE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEe--eCCHHHHHHHHHHhccCCeeEEEEccchhcc------ccHHHHHHHHhCCCCE
Confidence 3456788888888888888776543 3333334433 344448999997654332 222 234666778888
Q ss_pred EEEc
Q 031168 155 TVVK 158 (164)
Q Consensus 155 lvv~ 158 (164)
+=|.
T Consensus 96 VEVH 99 (149)
T 2uyg_A 96 VEVH 99 (149)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
No 305
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=44.44 E-value=49 Score=19.74 Aligned_cols=73 Identities=16% Similarity=-0.005 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
....+.+...+...|..... ....+. ++.++..++..+|+|++...-... .. -.....+-.. ..+||+++...
T Consensus 25 ~~~~~~l~~~L~~~~~~~~v-~~~~~~-~~a~~~l~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 25 PLFREGVVRALSLSGSVNVV-GEADDG-AAALELIKAHLPDVALLDYRMPGM-DG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HHHHHHHHHHHHHHSSEEEE-EEESSH-HHHHHHHHHHCCSEEEEETTCSSS-CH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHHHhhCCCeEEE-EEeCCH-HHHHHHHHhcCCCEEEEeCCCCCC-CH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 34556667777666632211 122333 444555566679999998763221 11 1234444443 35788887544
No 306
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=43.92 E-value=74 Score=21.67 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=53.2
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.++...+++.++. ..+++...+.-......|.++...+.. +...
T Consensus 7 ~~~~~~~tlGFd~--~~~vral~~~g~~~~d~ViLv~~~~~~----------------------------------~~~~ 50 (244)
T 2wte_A 7 HMKSYFVTMGFNE--TFLLRLLNETSAQKEDSLVIVVPSPIV----------------------------------SGTR 50 (244)
T ss_dssp -CCEEEECCCSCC--HHHHHHHHHTTCCTTSEEEEEEESSCC----------------------------------HHHH
T ss_pred hhhhheeccCcCh--HHHHHHHHHhCCCCCCEEEEEeCCCcc----------------------------------hhHH
Confidence 3577888888874 446676666655566678887654322 2336
Q ss_pred hHHHHHHHHHHhcC-ceEEEEEeeC-ChhH---HHHHHhhhcCCcEEE
Q 031168 83 ETLDIVNTVARQKQ-IVVVMKIFWG-DPRE---KICEAIDKIPLSCLV 125 (164)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~g-~~~~---~I~~~a~~~~~dliV 125 (164)
++++.+++.+...| ++++...+.- +..+ .|.+......-+++|
T Consensus 51 ~A~~~i~~~l~~~~~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iiv 98 (244)
T 2wte_A 51 AAIESLRAQISRLNYPPPRIYEIEITDFNLALSKILDIILTLPEPIIS 98 (244)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEE
T ss_pred HHHHHHHHHHHHcCCCceEEEEECCccHHHHHHHHHHHHhhcCCcEEE
Confidence 78888888888775 4777665554 4433 344444443225555
No 307
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=43.70 E-value=63 Score=20.78 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=32.2
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHH----HHhhhcCCcEEEEee
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKIC----EAIDKIPLSCLVIGN 128 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~----~~a~~~~~dliVig~ 128 (164)
+..+..-..+.+.+++.|.++.....-.|-.+.|. +.+.+.++|+||+..
T Consensus 36 ~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 36 PIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred eEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 44566777788888889998766655554444443 333333589998743
No 308
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=43.54 E-value=31 Score=24.31 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE-Ec
Q 031168 112 ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV-VK 158 (164)
Q Consensus 112 I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv-v~ 158 (164)
+++.+.+.+.|.|++|+.+-..+... +..+...+-+..+.||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECC
Confidence 56667778899999993223222222 234555555558999999 88
No 309
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=43.26 E-value=87 Score=22.27 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCceEEEEEeeCCh-hHHHHHHhhhcCCcEEEEeecC
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+++.+.+.|+++.. ..+. .+++.+..++.++|++|+...+
T Consensus 48 ~~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 48 SPVKEIARQNEIPIIQ---PFSLRDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp CHHHHHHHHTTCCEEC---CSCSSSHHHHHHHHTTCCSEEEEESCC
T ss_pred CHHHHHHHHcCCCEEC---cccCCCHHHHHHHHhcCCCEEEEcCcc
Confidence 3566777888998532 1222 2477888889999999997653
No 310
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=43.22 E-value=48 Score=19.30 Aligned_cols=67 Identities=12% Similarity=-0.055 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~ 160 (164)
....+.+...+...|+.+. ...+. ++.++......+|+|+ ..+.+.+ .....+-... .+||+++-..
T Consensus 28 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~dlvi--~~~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 28 SVLGGEIEKGLNVKGFMAD---VTESL-EDGEYLMDIRNYDLVM--VSDKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESCH-HHHHHHHHHSCCSEEE--ECSTTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHcCcEEE---EeCCH-HHHHHHHHcCCCCEEE--EcCccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 4456667777777777543 23343 4444555667799999 2222211 2333343334 6888887543
No 311
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=43.20 E-value=96 Score=22.78 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=67.7
Q ss_pred ceEEEEeCCC--hhhHHHHHHHHhhcccC---CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCC
Q 031168 5 RRVGVAVDFS--ACSKKALQWAADNVVRN---GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (164)
Q Consensus 5 ~~ILv~~d~s--~~~~~~l~~a~~la~~~---~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
++++|-+.+. ++.+.++++|.+|+... +..|.++.=....... +...|.++-.+........-
T Consensus 67 ~rllvIaGPCSIed~e~aleyA~~Lk~~~~~~~d~l~iVmR~yfeKPR--Ts~GwKGli~dP~ld~Sf~g---------- 134 (370)
T 1of8_A 67 DRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPR--TTVGWKGLINDPDVNNTFNI---------- 134 (370)
T ss_dssp CSEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCC--SSSSCCCTTTCTTSSSCCCH----------
T ss_pred CCeEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEecccccc--CCccccccccCCCcCCCcCH----------
Confidence 3455544332 23567888888886542 3345544432222221 22566666543322222211
Q ss_pred CCchHHHHHHHHH---HhcCceEEEEEeeCChhHHHHHHhhhcCCcEE---EEeecCCCccceecccchhHHHhhcCCCc
Q 031168 80 PDPETLDIVNTVA---RQKQIVVVMKIFWGDPREKICEAIDKIPLSCL---VIGNRGLGKLKRAIMGSVSNYVVNNGSCP 153 (164)
Q Consensus 80 ~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dli---Vig~~~~~~~~~~~~gs~~~~l~~~~~~p 153 (164)
++=++.+++.. .+.|+++-+++..-...+.+ +|+| -||++.-.. ..-..+.....||
T Consensus 135 --~~GL~i~r~ll~~v~e~GlPvaTEvld~~~~qyv--------~Dllsw~aIGARt~es-------q~hre~Asgl~~P 197 (370)
T 1of8_A 135 --NKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYL--------ADLVSFGAIGARTTES-------QLHRELASGLSFP 197 (370)
T ss_dssp --HHHHHHHHHHHHHHHTTTCCEEEECCSSSTHHHH--------GGGCSEEEECTTTTTC-------HHHHHHHHTCSSC
T ss_pred --HHHHHHHHHHHHHHHHcCCceEEeecCcccHHHH--------HHHHhhccccCccccc-------HHHHHHHhcCCCe
Confidence 33444444444 67899998888776443333 6888 677774321 1223456678999
Q ss_pred EEEEcCC
Q 031168 154 VTVVKQG 160 (164)
Q Consensus 154 Vlvv~~~ 160 (164)
|.+=+..
T Consensus 198 Vg~Kngt 204 (370)
T 1of8_A 198 VGFKNGT 204 (370)
T ss_dssp EEEECCT
T ss_pred EEEcCCC
Confidence 9876543
No 312
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=43.12 E-value=26 Score=19.87 Aligned_cols=69 Identities=9% Similarity=0.062 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
...+.+...+...|..+. . -....+.++......+|++++...-.. ... -...+.+-.. ..+|++++-.
T Consensus 14 ~~~~~l~~~l~~~~~~v~---~-~~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g---~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1dc7_A 14 SIRWVLERALAGAGLTCT---T-FENGNEVLAALASKTPDVLLSDIRMPG-MDG---LALLKQIKQRHPMLPVIIMTA 83 (124)
T ss_dssp SHHHHHHHHHTTTTCCCE---E-CCCTTHHHHHSSSCCCSCEEECSCSSH-HHH---CSTHHHHHHHCTTSCCCCBCC
T ss_pred HHHHHHHHHHHhCCcEEE---E-eCCHHHHHHHHhcCCCCEEEEeeecCC-CCH---HHHHHHHHhhCCCCCEEEEec
Confidence 345566666666666543 1 223344555666677999999876322 111 1234444443 3578877754
No 313
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=43.02 E-value=50 Score=19.47 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
++..+.+.+.+.+.|++++..-......+ .-.++|.||+|.+..
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~~~------~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTNVD------DVASKDVILLGCPAM 57 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCCHH------HHHTCSEEEEECCCB
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCHH------HHhcCCEEEEEcccc
Confidence 45666777777777887766543332111 123579999998854
No 314
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=42.87 E-value=46 Score=19.01 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh---cCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~ 158 (164)
...+.++..+...|.. +. ...+ ..+.++......+|++++...-.. .... ...+.+-. ...+|++++.
T Consensus 15 ~~~~~l~~~l~~~~~~~v~---~~~~-~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~l~~~l~~~~~~~~~~ii~~s 86 (128)
T 1jbe_A 15 TMRRIVRNLLKELGFNNVE---EAED-GVDALNKLQAGGYGFVISDWNMPN-MDGL---ELLKTIRAXXAMSALPVLMVT 86 (128)
T ss_dssp HHHHHHHHHHHHTTCCCEE---EESS-HHHHHHHHTTCCCCEEEEESCCSS-SCHH---HHHHHHHC--CCTTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEE---eeCC-HHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCcEEEEe
Confidence 3455666666666652 22 1233 344455666677999999876322 1111 23444443 2357888875
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 87 ~~ 88 (128)
T 1jbe_A 87 AE 88 (128)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 315
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=42.84 E-value=84 Score=21.96 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+.| .+.|++.++|-+.+-.+.......--+-..-+.|...++.||++..
T Consensus 59 v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (292)
T 2ojp_A 59 VVMMTLDLAD-GRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYN 134 (292)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEC
T ss_pred HHHHHHHHhC-CCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444444332 235543333222454444 5678889999998877654322211111223457778899999874
No 316
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=42.68 E-value=82 Score=21.79 Aligned_cols=72 Identities=4% Similarity=-0.070 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhcCceEEEEE-eeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKI-FWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+++.|+++.... ..+++..+ .++.....++|.||+......... ...+ .+....+||+.+.
T Consensus 19 ~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~-----~~~~-~a~~~gipvV~~d 92 (316)
T 1tjy_A 19 TSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-----PALK-RAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTH-----HHHH-HHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHHH-HHHHCcCEEEEec
Confidence 3456666777777787665421 23455433 345555668999998754332111 1222 3455689998885
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 93 ~ 93 (316)
T 1tjy_A 93 S 93 (316)
T ss_dssp S
T ss_pred C
Confidence 4
No 317
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=42.51 E-value=32 Score=25.02 Aligned_cols=76 Identities=5% Similarity=-0.008 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-c-----e-----ecccchhHHHhhcCCCc
Q 031168 86 DIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-K-----R-----AIMGSVSNYVVNNGSCP 153 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~-----~-----~~~gs~~~~l~~~~~~p 153 (164)
..+-+.+++.+.-+-..-..+ ....++++.|++.+..+|+--+.+.... . . ..+...+..+..+.++|
T Consensus 10 ~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VP 89 (349)
T 3elf_A 10 AEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVN 89 (349)
T ss_dssp HHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCC
Confidence 344445556677665555555 7899999999999999888765432111 0 0 01233455677788999
Q ss_pred EEEEcCCC
Q 031168 154 VTVVKQGI 161 (164)
Q Consensus 154 Vlvv~~~~ 161 (164)
|.+--++.
T Consensus 90 VaLHlDHg 97 (349)
T 3elf_A 90 VALHTDHC 97 (349)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 98765544
No 318
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=42.38 E-value=48 Score=19.06 Aligned_cols=44 Identities=5% Similarity=-0.010 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
....+.+...+.+.|..+. ...+. ++.++...+..+|+|++...
T Consensus 16 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 16 QAMAAAIERVLKRDHWQVE---IAHNG-FDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHTCCSEEEEESC
T ss_pred HHHHHHHHHHHHHCCcEEE---EeCCH-HHHHHHHHhcCCCEEEEecC
Confidence 3455666777777777543 22333 44455666778999999876
No 319
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=42.30 E-value=92 Score=22.30 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+.| .+.|++.++|-+.+-.+.......--+=.--..|...++.||++..
T Consensus 92 vi~~~ve~~~-grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 167 (332)
T 2r8w_A 92 AIEAAATILR-GRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYN 167 (332)
T ss_dssp HHHHHHHHHT-TSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHhC-CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444443332 234444333333555544 5678889999999877654332211111222457777899999874
No 320
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=42.29 E-value=77 Score=21.37 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|.++......+++.. ..++.....++|-||+......... ...+ .+....+|++++..
T Consensus 18 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 91 (290)
T 2fn9_A 18 VVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSI-----ANVK-RAKEAGIPVFCVDR 91 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHHH-HHHHCCCeEEEEec
Confidence 45667777778888887765443345533 3455555678999988643222111 1222 34456899988854
No 321
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=42.21 E-value=46 Score=18.75 Aligned_cols=71 Identities=4% Similarity=-0.071 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ....+. ++.++......+|++++...-.. ... -...+.+-.. ..+|++++...
T Consensus 13 ~~~~~l~~~l~~~g~~vv--~~~~~~-~~a~~~~~~~~~dlil~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 13 FMRMMLKDIITKAGYEVA--GEATNG-REAVEKYKELKPDIVTMDITMPE-MNG---IDAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp HHHHHHHHHHHHTTCEEE--EEESSH-HHHHHHHHHHCCSEEEEECSCGG-GCH---HHHHHHHHHHCTTCCEEEEECT
T ss_pred HHHHHHHHHHhhcCcEEE--EEECCH-HHHHHHHHhcCCCEEEEeCCCCC-CcH---HHHHHHHHhhCCCCeEEEEeCC
Confidence 345566666666677532 122333 33444555667999999876322 111 1234444443 45888887543
No 322
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=42.18 E-value=88 Score=22.04 Aligned_cols=74 Identities=8% Similarity=0.074 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+.| .+.|++.++|-+.+-.+.......--+-.--..|...++.||++..
T Consensus 70 vi~~~~~~~~-grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 70 LVSRTLEIVD-GKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4444444332 234444333222455444 5678889999999887654332211111223457778899999874
No 323
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=42.16 E-value=70 Score=20.84 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcc
Q 031168 82 PETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKL 134 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~ 134 (164)
++..+.++..+. +++ +......+. +.+++++.+++.+|.|.+....+
T Consensus 69 eeR~~ml~~~~~--~v~~v~v~~f~~~----~~d~l~~l~~~~iv~G~r~~~Df 116 (187)
T 3k9w_A 69 EERLKIANEVLG--HYPNVKVMGFTGL----LKDFVRANDARVIVRGLRAVSDF 116 (187)
T ss_dssp HHHHHHHHHHHT--TCTTEEEEEESSC----HHHHHHHTTCSEEEEECCTTSCH
T ss_pred HHHHHHHHHHhc--cCCcEEEEechhh----HHHHHHHcCCCEEEECCCccccc
Confidence 445555655443 332 222222332 34567788999999997654443
No 324
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=42.12 E-value=54 Score=19.57 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHh-cCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 82 PETLDIVNTVARQ-KQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
....+.+...+.. .|+.+.. ...+. .+.++...+..+|+|++...-... .. -.....+-.. ..+||+++-.
T Consensus 15 ~~~~~~l~~~L~~~~~~~v~~--~~~~~-~~a~~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~ 87 (153)
T 3cz5_A 15 PIVREGYRRLIERRPGYAVVA--EAADA-GEAYRLYRETTPDIVVMDLTLPGP-GG---IEATRHIRQWDGAARILIFTM 87 (153)
T ss_dssp HHHHHHHHHHHTTSTTEEEEE--EESSH-HHHHHHHHTTCCSEEEECSCCSSS-CH---HHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHHHHhhCCCcEEEE--EeCCH-HHHHHHHhcCCCCEEEEecCCCCC-CH---HHHHHHHHHhCCCCeEEEEEC
Confidence 3455666676765 4654321 23333 444556666779999998763221 11 1234444443 3588888754
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 88 ~ 88 (153)
T 3cz5_A 88 H 88 (153)
T ss_dssp C
T ss_pred C
Confidence 3
No 325
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=42.06 E-value=47 Score=21.57 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=28.3
Q ss_pred CCceEEEEeC-CChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 3 GTRRVGVAVD-FSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 3 ~~~~ILv~~d-~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
.+.|||+... .+.++..+++...+-+...+.++.++.+.+.
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 3457777663 3345667777777777767888888887664
No 326
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=41.98 E-value=20 Score=25.41 Aligned_cols=11 Identities=9% Similarity=-0.021 Sum_probs=7.7
Q ss_pred EEEEEEEecCC
Q 031168 34 HLILVTVVPEG 44 (164)
Q Consensus 34 ~l~~l~v~~~~ 44 (164)
.+.++|+.+.-
T Consensus 18 ~mrilh~SD~H 28 (336)
T 2q8u_A 18 ELKILHTSDWH 28 (336)
T ss_dssp EEEEEEEECCC
T ss_pred ceEEEEECccc
Confidence 57788887754
No 327
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=41.96 E-value=38 Score=21.72 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
..+.+++.++.|..+...++ +++.|+..|+++.++.-.
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 34679999999998887775 557788899988777543
No 328
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=41.92 E-value=81 Score=21.55 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++... ..++.....++|-||+......... ...+ .+....+||+++..
T Consensus 18 ~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 91 (306)
T 2vk2_A 18 AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWE-----PVLK-EAKDAEIPVFLLDR 91 (306)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHH-----HHHH-HHHHCCCCEEEecC
Confidence 34556677777778887665433345433 3455555667999988654222111 1222 34456899988854
No 329
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=41.89 E-value=74 Score=21.11 Aligned_cols=72 Identities=8% Similarity=0.082 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|..+......++.. ..+++.....++|-||+....... .... ..+.....||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~-~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 18 ARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE------DDSY-RELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS------CCHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc------HHHH-HHHHHcCCCEEEEcc
Confidence 5577778888888899877655545543 345666667789999986543111 1222 345566899988854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 91 ~ 91 (272)
T 3o74_A 91 R 91 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 330
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=41.77 E-value=1.2e+02 Score=23.31 Aligned_cols=24 Identities=13% Similarity=-0.030 Sum_probs=13.5
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
+.-+...|..++. .+.++.++...
T Consensus 115 TTl~~kLA~~l~~-~G~kVllVd~D 138 (504)
T 2j37_W 115 TTTCSKLAYYYQR-KGWKTCLICAD 138 (504)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred HHHHHHHHHHHHh-CCCeEEEEecc
Confidence 4445555555554 36667766553
No 331
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=41.69 E-value=50 Score=19.10 Aligned_cols=70 Identities=9% Similarity=0.007 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+. .+.++......+|++++...-... .. -.....+-.. ..+|++++...
T Consensus 14 ~~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~~~~~~~dlvl~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 14 SIVTLLQYNLERSGYDVI---TASDG-EEALKKAETEKPDLIVLDVMLPKL-DG---IEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHHCCSEEEEESSCSSS-CH---HHHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHHHHHCCcEEE---EecCH-HHHHHHHhhcCCCEEEEecCCCCC-CH---HHHHHHHHcCCCCCCEEEEECC
Confidence 345556666666676543 23343 344455566679999998763221 11 1234444443 46888887543
No 332
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=41.69 E-value=22 Score=21.16 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=25.8
Q ss_pred CceEEEEeCCChhh----HHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDFSACS----KKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~~----~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
|||+++-+..+|.. ..++++|...+.. +.++.++...+
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~-~~~v~vff~~D 42 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSAL-TDDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTT-CSCEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEehH
Confidence 37899999887754 5567777776533 45776666655
No 333
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=41.52 E-value=96 Score=22.35 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++.+.+... ..+++-.-+-..+..+.| .+.|++.++|-+.+-.+.......--+-..-..|...++.||++..
T Consensus 89 vi~~~ve~~~-grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 89 IARFAIDHVD-RRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp HHHHHHHHHT-TSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444444332 234443333222455544 5678889999998877654322211111222457778899999874
No 334
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=41.48 E-value=88 Score=21.85 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=32.4
Q ss_pred ChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 107 DPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 107 ~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+.| .+.|++.++|-+.+-.+.......--+-..-..|...++.||++..
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (294)
T 2ehh_A 80 ATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYN 133 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 455544 5678889999998887654322211111222457777899999874
No 335
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=41.43 E-value=13 Score=24.80 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=15.9
Q ss_pred CceEEEEeCCChhhHHHHHHHHhh
Q 031168 4 TRRVGVAVDFSACSKKALQWAADN 27 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~l 27 (164)
..++.++.|+... ..+++.+..+
T Consensus 6 ~~~lilalD~~~~-~~~~~~~~~~ 28 (218)
T 3jr2_A 6 KPMIQIALDQTNL-TDAVAVASNV 28 (218)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHHH
T ss_pred CCCeEEEeCCCCH-HHHHHHHHHh
Confidence 5789999998753 3456666554
No 336
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=41.40 E-value=64 Score=20.54 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHh-cCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQ-KQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
++..+.+.+.+.+ .|++++..-......+ .. .++|.||+|.+-.
T Consensus 19 ~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~----~l--~~aD~ii~gsP~y 63 (188)
T 2ark_A 19 KKMAELVAEGARSLEGTEVRLKHVDEATKE----DV--LWADGLAVGSPTN 63 (188)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTCCHH----HH--HHCSEEEEEEECB
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEhhhCCHH----HH--HhCCEEEEEeCcc
Confidence 5566777777776 7777665544332211 12 2369999999855
No 337
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=41.26 E-value=54 Score=19.33 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=11.6
Q ss_pred HHHHHHhhhcCCcEEEEeec
Q 031168 110 EKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~ 129 (164)
.+.++......+|+|++...
T Consensus 39 ~~al~~~~~~~~dlvllD~~ 58 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVR 58 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEeCC
Confidence 33344445556777777654
No 338
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=41.22 E-value=95 Score=22.13 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCceEEEEEeeCCh-hHHHHHHhhhcCCcEEEEeecC
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+++.+.+.|+++.. ..+. ..+.++..++.++|++|+...+
T Consensus 50 ~pv~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 92 (317)
T 3rfo_A 50 TPVKVEAEKHGIPVLQ---PLRIREKDEYEKVLALEPDLIVTAAFG 92 (317)
T ss_dssp CHHHHHHHHTTCCEEC---CSCTTSHHHHHHHHHHCCSEEEESSCC
T ss_pred CHHHHHHHHcCCCEEc---cccCCCHHHHHHHHhcCCCEEEEcCch
Confidence 3567777888988542 1121 2345677778889999997654
No 339
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=41.00 E-value=1.1e+02 Score=22.89 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.+...+. ....+..+.-..++.+..++.++|+++-+.+
T Consensus 350 ~~~~~~~ll~~~~~-~~~~v~~~~d~~~l~~~i~~~~pDl~ig~~~ 394 (458)
T 1mio_B 350 FQKEIDAMLAEAGI-EGSKVKVEGDFFDVHQWIKNEGVDLLISNTY 394 (458)
T ss_dssp HHHHHHHHHHTTTC-CSCEEEESCBHHHHHHHHHHSCCSEEEESGG
T ss_pred HHHHHHHHHHhcCC-CCCEEEECCCHHHHHHHHHhcCCCEEEeCcc
Confidence 34455555554330 2234555645566888888889999985544
No 340
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=40.80 E-value=85 Score=21.90 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+.| .+.|++.++|-+++-.+.......--+-..-..|...++.||++..
T Consensus 58 v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 58 VVEITIKTAN-GRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp HHHHHHHHHT-TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444332 235544333333454444 5678889999999887754322211111122357778899999864
No 341
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=40.78 E-value=85 Score=21.90 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+. +.+.|++.++|-+.+-.+.......--+-..-..|...++.||++..
T Consensus 59 v~~~~~~~~~-gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3a5f_A 59 TIKFVIDKVN-KRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYN 134 (291)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444444332 23554433322244444 45678889999999887654322210000111235667789999874
No 342
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=40.71 E-value=90 Score=21.74 Aligned_cols=52 Identities=10% Similarity=0.023 Sum_probs=32.3
Q ss_pred ChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 107 DPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 107 ~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+.| .+.|++.++|-+.+-.+.......--+-..-..|...++.||++..
T Consensus 80 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (289)
T 2yxg_A 80 CTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYN 133 (289)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444444 5678889999998887654322211111223457777899999874
No 343
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=40.71 E-value=51 Score=23.09 Aligned_cols=49 Identities=4% Similarity=-0.216 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh------------hHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP------------REKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
..+.+.+.+.+.+.|++++..-+.+-+ ...+.+...+ +|.||++++-..
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~--ADgiV~aSP~Yn 135 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEW--SEGQVWCSPERH 135 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHH--CSEEEEEEEEET
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHH--CCeEEEEcCccc
Confidence 456666777777778877665433211 4566666666 799999997543
No 344
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=40.71 E-value=57 Score=19.42 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
....+.+...+...+-... +..-+-.++.++......+|+|++...-... .. -.....+-.. ..+||+++-..
T Consensus 30 ~~~~~~l~~~L~~~~~~~~--v~~~~~~~~al~~l~~~~~dlii~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 30 SMLRDAMCQLLTLQPDVES--VLQAKNGQEAIQLLEKESVDIAILDVEMPVK-TG---LEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHHHHHHTSTTEEE--EEEESSHHHHHHHHTTSCCSEEEECSSCSSS-CH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHHHHhCCCcEE--EEEECCHHHHHHHhhccCCCEEEEeCCCCCC-cH---HHHHHHHHHhCCCCeEEEEeCC
Confidence 3455667777766553222 2222334455566677789999998763221 11 1234444443 35888887544
No 345
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=40.64 E-value=67 Score=20.26 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=19.1
Q ss_pred CceEEEEEeeCChhHHHHHHhhh----cCCcEEEEee
Q 031168 96 QIVVVMKIFWGDPREKICEAIDK----IPLSCLVIGN 128 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~----~~~dliVig~ 128 (164)
|+++.....-+|-.+.|.+..++ .++|+||+..
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 88766655555544444433322 3689998843
No 346
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=40.36 E-value=1e+02 Score=22.23 Aligned_cols=80 Identities=9% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHhhccc-----CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 12 DFSACSKKALQWAADNVVR-----NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~-----~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
+.......+++++..+... ...++.+++-.+... ....+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g------------------------------------~~~~~ 182 (419)
T 3h5l_A 139 PETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYS------------------------------------VNIAN 182 (419)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHH------------------------------------HHHHH
T ss_pred chHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcchh------------------------------------HHHHH
Q ss_pred HHHHHHHhcCceEEEEEeeC---ChhHHHHHHhhhcCCcEEEEe
Q 031168 87 IVNTVARQKQIVVVMKIFWG---DPREKICEAIDKIPLSCLVIG 127 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliVig 127 (164)
.+++.+++.|+++....... .-...++...+..++|.|++.
T Consensus 183 ~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~ 226 (419)
T 3h5l_A 183 AIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVT 226 (419)
T ss_dssp HHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEc
No 347
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=40.30 E-value=99 Score=22.34 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 15 ACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 15 ~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
..++..+++|.++|.+...+|+++|=..
T Consensus 144 ~~~eRiar~AF~~A~~rrkkvt~v~KaN 171 (336)
T 1wpw_A 144 FASERIAKVGLNFALRRRKKVTCVHKAN 171 (336)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEECCc
Confidence 4578899999999998877888887443
No 348
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=40.15 E-value=96 Score=21.88 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHH---HHHHhhhcCCcEEEEeecCCC
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREK---ICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~---I~~~a~~~~~dliVig~~~~~ 132 (164)
+++..+....++.+-.....+++... .+..+...++|+|++...+..
T Consensus 149 eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 149 EQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCC
T ss_pred HHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCch
Confidence 33445555556664321112355443 334445667899999887653
No 349
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=40.14 E-value=68 Score=20.13 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=45.8
Q ss_pred hcCCCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccch-hHHHhhcCCC
Q 031168 76 YGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSV-SNYVVNNGSC 152 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~-~~~l~~~~~~ 152 (164)
+.....+...+.+++.+.+.|++++..-.. |...+.|-+.... .|-||+.....+. .|+ ....+....+
T Consensus 24 YG~~tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~--~dgiiINpgA~TH------tSvAlrDAl~~v~~ 95 (146)
T 1h05_A 24 YGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADA--AEPVILNAGGLTH------TSVALRDACAELSA 95 (146)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHH--TCCEEEECGGGGG------TCHHHHHHHHTCCS
T ss_pred CCcCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhc--CcEEEECchhhcc------ccHHHHHHHHhCCC
Confidence 333456778888888888889877754332 3445555444333 7999997654332 222 2346667788
Q ss_pred cEEEEc
Q 031168 153 PVTVVK 158 (164)
Q Consensus 153 pVlvv~ 158 (164)
|++=|.
T Consensus 96 P~VEVH 101 (146)
T 1h05_A 96 PLIEVH 101 (146)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 887653
No 350
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=40.08 E-value=1e+02 Score=22.17 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=22.8
Q ss_pred HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 112 ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 112 I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..+..... +|.||+-.... ...+.+..++.+||+
T Consensus 93 Tarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 126 (328)
T 3grf_A 93 TAEVFSRM-VDICTARLATK---------EMMREMAQHASVPCI 126 (328)
T ss_dssp HHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred HHHHHHhh-CCEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 33344444 79999975532 355678888999976
No 351
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=40.02 E-value=95 Score=21.81 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+. +.+.|++.++|-+.+-.+.......--+=.--..|...++.||++..
T Consensus 70 v~~~~~~~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (301)
T 1xky_A 70 LYRHVVSVVD-KRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYN 145 (301)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHhC-CCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444444332 23444333322244444 45678889999998877654332211111223457778899999874
No 352
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.94 E-value=82 Score=21.05 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+..+.+.+.+.+.|..+......++... ..++.....++|-||+......... .... .+....+||+++-.
T Consensus 17 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 17 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG-----NAVK-MANQANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHHH-HHHHCCCcEEEecC
Confidence 45677777778888887665433345433 3455556678999988543221110 1122 34456899998854
No 353
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=39.84 E-value=67 Score=22.21 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=15.2
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhh
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADN 27 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~l 27 (164)
|.|-+++.|++|... ...+++.+-.+
T Consensus 1 ~~m~~~LivALD~~~-~~~al~l~~~l 26 (259)
T 3tfx_A 1 MVMDRPVIVALDLDN-EEQLNKILSKL 26 (259)
T ss_dssp ---CCCEEEECCCSC-HHHHHHHHHTT
T ss_pred CCCCCCeEEEeCCCC-HHHHHHHHHHh
Confidence 344568999999975 33355555444
No 354
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=39.76 E-value=64 Score=23.35 Aligned_cols=34 Identities=18% Similarity=-0.006 Sum_probs=19.2
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
||.+++||+.-.+. ....++ +-++..|.+++++.
T Consensus 4 m~~~~~ilI~g~g~-~~~~~~----~a~~~~G~~~v~v~ 37 (403)
T 4dim_A 4 MYDNKRLLILGAGR-GQLGLY----KAAKELGIHTIAGT 37 (403)
T ss_dssp --CCCEEEEECCCG-GGHHHH----HHHHHHTCEEEEEE
T ss_pred ccCCCEEEEECCcH-hHHHHH----HHHHHCCCEEEEEc
Confidence 77888999976554 233333 23444577777763
No 355
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=39.73 E-value=91 Score=21.78 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|..+......+ .....+++.....++|-||+... -..+....+|++++-.
T Consensus 80 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~--------------~~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 80 SESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV--------------VGSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC--------------TTCCC-CCSCEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch--------------HHHHhhCCCCEEEECc
Confidence 4567777777888888776654444 11234566666677898888543 1123455788877743
No 356
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=39.68 E-value=51 Score=18.54 Aligned_cols=70 Identities=10% Similarity=-0.094 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+ ..+..+......+|++++...-... .. -...+.+-.. ..+|++++...
T Consensus 11 ~~~~~l~~~l~~~g~~v~---~~~~-~~~a~~~~~~~~~dlil~D~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 11 LLRHHLKVQIQDAGHQVD---DAED-AKEADYYLNEHIPDIAIVDLGLPDE-DG---LSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESS-HHHHHHHHHHSCCSEEEECSCCSSS-CH---HHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHHHHhhcCCEEE---EeCC-HHHHHHHHhccCCCEEEEecCCCCC-CH---HHHHHHHHhcCCCCCEEEEecC
Confidence 345566666666676543 2233 3444555666789999998653221 11 1234444433 36888887543
No 357
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=39.55 E-value=57 Score=20.08 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=25.3
Q ss_pred cCceEEEEEeeCC--hhHHHHHHhhhcCCcEEEEeec
Q 031168 95 KQIVVVMKIFWGD--PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 95 ~~~~~~~~~~~g~--~~~~I~~~a~~~~~dliVig~~ 129 (164)
.|++++.. ..+. -...|.+..++.++|+||--..
T Consensus 48 ~Gl~v~~v-~k~~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 48 TGLTVEKL-LSGPLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HCCCCEEC-SCGGGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred hCceEEEE-EecCCCCcchHHHHHHCCCccEEEEccC
Confidence 58887763 2322 2357999999999999998765
No 358
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=39.44 E-value=87 Score=21.17 Aligned_cols=73 Identities=8% Similarity=0.024 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHhc-CceEEEEEee---CChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 82 PETLDIVNTVARQK-QIVVVMKIFW---GDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~---g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
....+.+.+.+.+. |..+...... ++.. ..+++.....++|-||+......... ...+ -+....+||+
T Consensus 25 ~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~~-~~~~~~iPvV 98 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK-----GFTD-ALNELGIPYI 98 (304)
T ss_dssp HHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH-----HHHH-HHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH-----HHHH-HHHHCCCeEE
Confidence 55777888888877 7777665542 2443 34466667788999998654221111 1122 3445589999
Q ss_pred EEcCC
Q 031168 156 VVKQG 160 (164)
Q Consensus 156 vv~~~ 160 (164)
++-..
T Consensus 99 ~~~~~ 103 (304)
T 3gbv_A 99 YIDSQ 103 (304)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 88543
No 359
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=39.42 E-value=98 Score=21.78 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+.| .+.|++.++|-+.+-.+.......--+-..-..|...++.||++..
T Consensus 74 v~~~~~~~~~-grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 149 (304)
T 3cpr_A 74 LLKAVREEVG-DRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYD 149 (304)
T ss_dssp HHHHHHHHHT-TTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444444332 234443322222455544 5678889999998877644322211111222457777899999874
No 360
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=39.34 E-value=97 Score=21.70 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-..+-..+..+. +.+.|++.++|-+.+-.+....... -+. ..-+.|...++.||++..
T Consensus 65 v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~lPiilYn 140 (297)
T 3flu_A 65 VIEAVVKHVA-KRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIY-QHFKTIAEATSIPMIIYN 140 (297)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCCCCEEEEE
Confidence 3444444332 23554443322244444 4467889999999998765433221 111 233557778899999874
No 361
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=39.25 E-value=90 Score=21.96 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=31.7
Q ss_pred ChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC-CcEEEEc
Q 031168 107 DPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS-CPVTVVK 158 (164)
Q Consensus 107 ~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~ 158 (164)
+..+.| .+.|++.++|-+.+-.+.......--+-..-..|...++ .||++..
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 444444 567888999999887765432221111122245667778 9999874
No 362
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=38.98 E-value=94 Score=21.46 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
....+.+...++..|+.+.. ...+.. +.++...+..+|+|++...=.....++ ..+..+-....+||+++...
T Consensus 170 ~~~~~~l~~~L~~~g~~v~~--~a~~g~-eAl~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 170 PVIAADIEALVRELGHDVTD--IAATRG-EALEAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHHHHHHTTCEEEE--EESSHH-HHHHHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHhhccCceEEE--EeCCHH-HHHHHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCCCCEEEEeCC
Confidence 34566777777777876642 223333 444555567799999987632111211 23444444448999988653
No 363
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=38.67 E-value=53 Score=21.37 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=24.6
Q ss_pred CceEEEEeCC-Ch--hhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDF-SA--CSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~-s~--~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
+|+|+|-+.. .+ .+..+++++.+++. .+.++.++.+.+
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~d 42 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGD 42 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGG
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEeccc
Confidence 5788876533 22 24667888887774 466777776554
No 364
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=38.58 E-value=60 Score=19.11 Aligned_cols=71 Identities=3% Similarity=-0.030 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHhc-CceEEEEEeeCChhHHHHHHhhhc-CCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQK-QIVVVMKIFWGDPREKICEAIDKI-PLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~~-~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.++..+... |..+ .....+..+.+ +..... .+|+|++...-.. ... -.....+-...++|++++-.
T Consensus 23 ~~~~~~l~~~L~~~~~~~~--v~~~~~~~~al-~~l~~~~~~dlvilD~~l~~-~~g---~~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 23 AMMRLYIASFIKTLPDFKV--VAQAANGQEAL-DKLAAQPNVDLILLDIEMPV-MDG---MEFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHHHHHHHTTCTTEEE--EEEESSHHHHH-HHHHHCTTCCEEEECTTSCC-CTT---CHHHHHHHHHCCCEEC-CBS
T ss_pred HHHHHHHHHHHHhCCCceE--EEEECCHHHHH-HHHhcCCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEE
Confidence 44566677777665 5443 22234444444 444445 7999999876322 111 13445555556678777653
No 365
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=38.56 E-value=89 Score=21.04 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+.+......++... ..++.....++|-||+......... .... .+....+||+++-.
T Consensus 17 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 17 VTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV-----TAIK-EANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH-----HHHH-HHHHCCCeEEEecC
Confidence 44667777777778887665433345543 3445555678999988543221111 1222 34556899988854
No 366
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=38.42 E-value=89 Score=20.99 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|..+......++... .+++.....++|-||+....... .....+.....+||+++..
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-------~~~~~l~~~~~iPvV~~~~ 95 (289)
T 1dbq_A 23 AEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMDW 95 (289)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-------HHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCH-------HHHHHHHhccCCCEEEEcc
Confidence 45667777777788887765433345433 34555556789988886442211 1223232236899888754
No 367
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=38.01 E-value=80 Score=20.37 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=49.4
Q ss_pred hhhhhcCCCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchh-HHHhh
Q 031168 72 IMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVS-NYVVN 148 (164)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~-~~l~~ 148 (164)
+.+.+.....+...+.+++.+.+.|++++..-.. |...+.|-+... ++|-||+.....+. .|++ ...+.
T Consensus 46 EP~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~--~~dgIIINPgAyTH------tSvAlrDAL~ 117 (172)
T 3n8k_A 46 EPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAAD--AAEPVILNAGGLTH------TSVALRDACA 117 (172)
T ss_dssp CHHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHH--HTCCEEEECGGGGG------TCHHHHHHHT
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhh--cCcEEEECcchhhh------hhHHHHHHHH
Confidence 3444555667788888888888889887765432 445555554332 37999997654332 2222 33566
Q ss_pred cCCCcEEEEc
Q 031168 149 NGSCPVTVVK 158 (164)
Q Consensus 149 ~~~~pVlvv~ 158 (164)
...+|++=|.
T Consensus 118 ~v~~P~VEVH 127 (172)
T 3n8k_A 118 ELSAPLIEVH 127 (172)
T ss_dssp TCCSCEEEEE
T ss_pred hCCCCEEEEE
Confidence 6788987663
No 368
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=37.98 E-value=73 Score=19.90 Aligned_cols=79 Identities=22% Similarity=0.151 Sum_probs=48.3
Q ss_pred hhhhhcCCCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccch-hHHHhh
Q 031168 72 IMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSV-SNYVVN 148 (164)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~-~~~l~~ 148 (164)
+.+.+.....+...+.+++.+.+.|++++..-.. |...+.|-+. .. +.|-||+.....+. .|+ ....+.
T Consensus 18 EP~iYG~~tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a-~~-~~dgiiiNpgA~TH------tSvAlrDAl~ 89 (143)
T 1gqo_A 18 EPEVFGRQTLTDIETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEA-EE-QYSGIVLNPGALSH------YSYAIRDAVS 89 (143)
T ss_dssp CHHHHCSCCHHHHHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHH-TT-TCSEEEEECGGGGG------TCHHHHHHHH
T ss_pred CCCcCCcCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHh-hh-cCcEEEEccchhcc------ccHHHHHHHH
Confidence 3344444566788888999888889877654332 3444444333 22 48999997654332 222 234666
Q ss_pred cCCCcEEEEc
Q 031168 149 NGSCPVTVVK 158 (164)
Q Consensus 149 ~~~~pVlvv~ 158 (164)
...+|++=|.
T Consensus 90 ~v~~P~VEVH 99 (143)
T 1gqo_A 90 SISLPVVEVH 99 (143)
T ss_dssp TSCSCEEEEE
T ss_pred hCCCCEEEEE
Confidence 6788887653
No 369
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=37.89 E-value=64 Score=19.20 Aligned_cols=72 Identities=4% Similarity=-0.169 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHhc-CceEEEEEeeCChhHHHHHHhhh-cCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEc
Q 031168 82 PETLDIVNTVARQK-QIVVVMKIFWGDPREKICEAIDK-IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~-~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 158 (164)
....+.+...+... |.... ....+. .+.++..+. ..+|+|+++..-... .. -.....+-.. ..+||+++.
T Consensus 13 ~~~~~~l~~~L~~~~g~~~v--~~~~~~-~~a~~~l~~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls 85 (154)
T 2qsj_A 13 HLIRAGAKNLLEGAFSGMRV--EGAETV-SDALAFLEADNTVDLILLDVNLPDA-EA---IDGLVRLKRFDPSNAVALIS 85 (154)
T ss_dssp HHHHHHHHHHHHHHCTTEEE--EEESSH-HHHHHHHHTTCCCSEEEECC-------C---HHHHHHHHHHCTTSEEEEC-
T ss_pred HHHHHHHHHHHHhCCCceEE--EEecCH-HHHHHHHhccCCCCEEEEeCCCCCC-ch---HHHHHHHHHhCCCCeEEEEe
Confidence 33556666666665 55211 122333 444455555 779999998763221 11 1234444443 358888875
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 86 ~~ 87 (154)
T 2qsj_A 86 GE 87 (154)
T ss_dssp --
T ss_pred CC
Confidence 43
No 370
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=37.76 E-value=83 Score=20.44 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh---cCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliVig~~ 129 (164)
....+.+++.+...|+.-...+..|+..+.+-+.... ..+|+|++...
T Consensus 104 ~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 104 AQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp SHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred HHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 4455666666666665333445567776655444332 45788888643
No 371
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=37.72 E-value=46 Score=20.53 Aligned_cols=64 Identities=8% Similarity=-0.037 Sum_probs=35.6
Q ss_pred HHHHhcCceEEEEEe--eC-C--hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 90 TVARQKQIVVVMKIF--WG-D--PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~--~g-~--~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
+++++.|++++.... .| + ....|.+..++.++|+||--..+... ..--|...++..-...+|++
T Consensus 61 ~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~--~~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 61 DWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTK--FVHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGG--GHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCc--CCccHHHHHHHHHHhCCCeE
Confidence 344566777765422 12 2 00469999999999999986654211 11123344444444566665
No 372
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=37.68 E-value=29 Score=23.21 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhcCc
Q 031168 18 KKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQI 97 (164)
Q Consensus 18 ~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
...+..++.+|+..+++..++|.-..... .. ...+...+...+.+..+.+.+++.|+
T Consensus 75 ~~~~~~~i~~A~~lGa~~v~~~~g~~~~~--------------------~~---~~~~~~~~~~~~~l~~l~~~a~~~gv 131 (254)
T 3ayv_A 75 LRRLLFGLDRAAELGADRAVFHSGIPHGR--------------------TP---EEALERALPLAEALGLVVRRARTLGV 131 (254)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCTTC--------------------CH---HHHHHTHHHHHHHTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCccc--------------------cc---ccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 35678888999999998877764322110 00 00011111223445556666667788
Q ss_pred eEEEEEeeCChhHHHHHHhhhc
Q 031168 98 VVVMKIFWGDPREKICEAIDKI 119 (164)
Q Consensus 98 ~~~~~~~~g~~~~~I~~~a~~~ 119 (164)
.+-.+-..+...+.+.+..+..
T Consensus 132 ~l~lEn~~~~~~~~~~~l~~~v 153 (254)
T 3ayv_A 132 RLLLENSHEPHPEALRPVLEAH 153 (254)
T ss_dssp EEEEECSSCSSGGGTHHHHHHH
T ss_pred EEEEcCCCCCCHHHHHHHHHhc
Confidence 8776655553444444444443
No 373
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=37.62 E-value=81 Score=20.27 Aligned_cols=72 Identities=7% Similarity=0.089 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhh------------cCCcEEEEeecCCCccceecccchhHHHhh
Q 031168 82 PETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDK------------IPLSCLVIGNRGLGKLKRAIMGSVSNYVVN 148 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~------------~~~dliVig~~~~~~~~~~~~gs~~~~l~~ 148 (164)
....+.+...+...|+. +. ...+..+.+...... ..+|+|++...-.. ...+ .+...+-.
T Consensus 71 ~~~~~~l~~~L~~~g~~~v~---~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~-~~G~---el~~~lr~ 143 (206)
T 3mm4_A 71 FISRKVATGKLKKMGVSEVE---QCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPE-MDGY---EATREIRK 143 (206)
T ss_dssp HHHHHHHHHHHHHTTCSEEE---EESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSS-SCHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeee---eeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCC-CCHH---HHHHHHHh
Confidence 45667777778777763 22 223444443333222 37999999876322 1111 23444443
Q ss_pred -----cCCCcEEEEcCC
Q 031168 149 -----NGSCPVTVVKQG 160 (164)
Q Consensus 149 -----~~~~pVlvv~~~ 160 (164)
...+||+++...
T Consensus 144 ~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 144 VEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp HHHTTTCCCCEEEEESS
T ss_pred hhhhcCCCCcEEEEECC
Confidence 257899988654
No 374
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=37.53 E-value=83 Score=20.37 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig~~ 129 (164)
.+.++.+++.+...|+.-...+..|+..+.+-..... ..+|+|++...
T Consensus 93 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~ 142 (223)
T 3duw_A 93 EKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD 142 (223)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC
Confidence 4566677777776676433456678877665554432 35899998654
No 375
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=37.44 E-value=54 Score=20.76 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=29.6
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
..+.+++.++.+......++ +++.|+..++++.++.-..
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIH-TAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEESCT
T ss_pred CCCCEEEEEcCCCCcHHHHH-HHHHHHHCCCEEEEEECCC
Confidence 34678999999988876665 5678888899888775543
No 376
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=37.43 E-value=1.1e+02 Score=21.75 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCceEEEEEe------eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIF------WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..-.|.......|..+-..-. .|.......+.....++|.||+-....+ ..+.+..++.+||+
T Consensus 50 TR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~---------~~~~la~~~~vPVI 118 (304)
T 3r7f_A 50 TRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDE---------YYEELVSQVNIPIL 118 (304)
T ss_dssp HHHHHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTT---------CHHHHHHHCSSCEE
T ss_pred HHHhHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 334455555566776544322 1323333344445556899999766433 34567788899976
No 377
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=37.40 E-value=42 Score=23.11 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=20.4
Q ss_pred ceEEEEeCCChhhHHH-HHHHHhhcccCCCEEEEE
Q 031168 5 RRVGVAVDFSACSKKA-LQWAADNVVRNGDHLILV 38 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~-l~~a~~la~~~~~~l~~l 38 (164)
.++.|++|.++..... .+++..++...+..+-.+
T Consensus 14 ~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~ 48 (255)
T 3qw3_A 14 SLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAY 48 (255)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEE
T ss_pred CCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEE
Confidence 4689999988643222 566666666555444333
No 378
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=37.30 E-value=64 Score=19.07 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-----cCCCcEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-----NGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-----~~~~pVlv 156 (164)
....+.++..+...|..+.. ..+ .++.++......+|+|++...-.. ...+ ...+.+-. ...+|+++
T Consensus 24 ~~~~~~l~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlvl~D~~mp~-~~g~---~~~~~lr~~~~~~~~~~pii~ 95 (143)
T 3m6m_D 24 EANRMVLQRLLEKAGHKVLC---VNG-AEQVLDAMAEEDYDAVIVDLHMPG-MNGL---DMLKQLRVMQASGMRYTPVVV 95 (143)
T ss_dssp HHHHHHHHHHHHC--CEEEE---ESS-HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHHHTTCCCCCEEE
T ss_pred HHHHHHHHHHHHHcCCeEEE---eCC-HHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhchhccCCCCeEEE
Confidence 33556667777766765432 233 445566667778999999876322 1111 22333321 13478888
Q ss_pred EcCC
Q 031168 157 VKQG 160 (164)
Q Consensus 157 v~~~ 160 (164)
+...
T Consensus 96 ~s~~ 99 (143)
T 3m6m_D 96 LSAD 99 (143)
T ss_dssp EESC
T ss_pred EeCC
Confidence 7643
No 379
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=37.17 E-value=79 Score=20.05 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
....+.+...+...|+.+. ...+ ..+.++......+|+|++...-.. ...+ .....+-.. ..+||+++...
T Consensus 14 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 14 MSVREGLRNLLRSAGFEVE---TFDC-ASTFLEHRRPEQHGCLVLDMRMPG-MSGI---ELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HHHHHHHHHHHHTTTCEEE---EESS-HHHHHHHCCTTSCEEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHHHhCCceEE---EcCC-HHHHHHhhhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 3355666677766676543 2233 445556666778999999876322 1111 234444443 46899888544
No 380
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=36.83 E-value=75 Score=19.65 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=25.9
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
.-.|++..-+. .+...++.+..++... ..+..+...+..
T Consensus 3 ~igiii~sHG~-~A~gl~~~~~~i~G~~-~~v~av~~~~~~ 41 (144)
T 3lfh_A 3 EKFVLIITHGD-FGKGLLSGAEVIIGKQ-ENVHTVGLNLGD 41 (144)
T ss_dssp CEEEEEEEETT-HHHHHHHHHHHHHCCC-SSEEEEEECTTC
T ss_pred cceEEEEeCcH-HHHHHHHHHHHHcCCC-CcEEEEEccCCC
Confidence 34677777665 6777778777777653 467777665543
No 381
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=36.81 E-value=1.1e+02 Score=21.56 Aligned_cols=74 Identities=12% Similarity=0.004 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-..+-..+..+. +.+.|++.++|-+++..+.......--+=..-+.|...++.||++..
T Consensus 73 v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 148 (304)
T 3l21_A 73 LLRAVLEAVG-DRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYD 148 (304)
T ss_dssp HHHHHHHHHT-TTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3344444332 24554443322344444 44678889999999987654332211111233557788899999874
No 382
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=36.78 E-value=88 Score=20.50 Aligned_cols=47 Identities=6% Similarity=0.216 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHhcCce---EEEEEeeCCh---hHHHHHHhhhcCCcEEEEee
Q 031168 82 PETLDIVNTVARQKQIV---VVMKIFWGDP---REKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~---~~~~~~~g~~---~~~I~~~a~~~~~dliVig~ 128 (164)
+..-..+.+.+++.|.+ +...++.++. .++|.+.+.+.++|+||...
T Consensus 22 D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTG 74 (195)
T 1di6_A 22 DKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTG 74 (195)
T ss_dssp CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred chHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 44555677777777775 3333444432 33444444434689998843
No 383
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=36.57 E-value=1.1e+02 Score=21.40 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+-++.+++.+++.|+.+-+.+..-.-.+.+.+ . +|.+=||++.-.... .-+.+. ...+||++=+.
T Consensus 88 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~----~-vd~~kIgs~~~~n~~------ll~~~a-~~~kPV~lk~G 153 (276)
T 1vs1_A 88 LEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSR----Y-ADMLQIGARNMQNFP------LLREVG-RSGKPVLLKRG 153 (276)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHH----H-CSEEEECGGGTTCHH------HHHHHH-HHTCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHH----h-CCeEEECcccccCHH------HHHHHH-ccCCeEEEcCC
Confidence 567888889999999998886665444444443 3 588888887443211 112222 45777776543
No 384
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=36.41 E-value=64 Score=18.80 Aligned_cols=73 Identities=7% Similarity=0.043 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh------cCCcEEEEeecCCCccceecccchhHHHhhc---CCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK------IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSC 152 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~------~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~ 152 (164)
....+.+...+...|...... ...+.. +.++..+. ..+|+|++...-.. ...+ ...+.+-.. ..+
T Consensus 17 ~~~~~~l~~~L~~~g~~~~v~-~~~~~~-~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~ 90 (143)
T 2qvg_A 17 EVDIQSVERVFHKISSLIKIE-IAKSGN-QALDMLYGRNKENKIHPKLILLDINIPK-MNGI---EFLKELRDDSSFTDI 90 (143)
T ss_dssp HHHHHHHHHHHHHHCTTCCEE-EESSHH-HHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHH---HHHHHHTTSGGGTTC
T ss_pred HHHHHHHHHHHHHhCCCceEE-EECCHH-HHHHHHHhcccccCCCCCEEEEecCCCC-CCHH---HHHHHHHcCccccCC
Confidence 445566777777667622221 223333 33444443 67999999876332 1111 234444443 468
Q ss_pred cEEEEcCC
Q 031168 153 PVTVVKQG 160 (164)
Q Consensus 153 pVlvv~~~ 160 (164)
|++++-..
T Consensus 91 ~ii~ls~~ 98 (143)
T 2qvg_A 91 EVFVLTAA 98 (143)
T ss_dssp EEEEEESC
T ss_pred cEEEEeCC
Confidence 88887543
No 385
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=36.31 E-value=63 Score=19.96 Aligned_cols=49 Identities=14% Similarity=0.098 Sum_probs=26.8
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
.+...+.-++.+.+.-++|+...++......-.+-+...+.++.||+++
T Consensus 72 ~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~ 120 (141)
T 4e0q_A 72 YNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQ 120 (141)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEE
Confidence 4455566666677888888875433211111123344556667888776
No 386
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=36.26 E-value=63 Score=18.61 Aligned_cols=73 Identities=8% Similarity=0.040 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh-------cCCcEEEEeecCCCccceecccchhHHHhhc---CC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK-------IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GS 151 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~-------~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~ 151 (164)
....+.+...+...|..+... ...+..+ .++.... ..+|+|++...-.. ...+ ...+.+-.. ..
T Consensus 12 ~~~~~~l~~~L~~~~~~~~v~-~~~~~~~-a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~---~~~~~l~~~~~~~~ 85 (140)
T 1k68_A 12 KADIRLIQEALANSTVPHEVV-TVRDGME-AMAYLRQEGEYANASRPDLILLXLNLPK-KDGR---EVLAEIKSDPTLKR 85 (140)
T ss_dssp HHHHHHHHHHHHTCSSCCEEE-EECSHHH-HHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHH---HHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHhcCCCceEE-EECCHHH-HHHHHHcccccccCCCCcEEEEecCCCc-ccHH---HHHHHHHcCccccc
Confidence 445667777777777743332 2234433 3444444 67999999876332 1111 234445444 45
Q ss_pred CcEEEEcCC
Q 031168 152 CPVTVVKQG 160 (164)
Q Consensus 152 ~pVlvv~~~ 160 (164)
+|++++-..
T Consensus 86 ~pii~ls~~ 94 (140)
T 1k68_A 86 IPVVVLSTS 94 (140)
T ss_dssp SCEEEEESC
T ss_pred ccEEEEecC
Confidence 888888543
No 387
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=36.23 E-value=68 Score=19.05 Aligned_cols=74 Identities=7% Similarity=0.045 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHh--------hhcCCcEEEEeecCCCccceecccchhHHHhh---cC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAI--------DKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN---NG 150 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a--------~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~---~~ 150 (164)
....+.+...+...|....... ..+..+.+...- ....+|+|++...-.. ... -...+.+-. ..
T Consensus 14 ~~~~~~l~~~L~~~g~~~~v~~-~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~-~~g---~~~~~~lr~~~~~~ 88 (152)
T 3heb_A 14 LGHARLIEKNIRRAGVNNEIIA-FTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPD-MTG---IDILKLVKENPHTR 88 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEE-ESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSS-SBH---HHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHhCCCcceEEE-eCCHHHHHHHHhccccccccccCCCCEEEEeCCCCC-CcH---HHHHHHHHhccccc
Confidence 4456677777777777433322 234444433332 4667999999876322 111 123444444 24
Q ss_pred CCcEEEEcCC
Q 031168 151 SCPVTVVKQG 160 (164)
Q Consensus 151 ~~pVlvv~~~ 160 (164)
.+|++++-..
T Consensus 89 ~~pii~~t~~ 98 (152)
T 3heb_A 89 RSPVVILTTT 98 (152)
T ss_dssp TSCEEEEESC
T ss_pred CCCEEEEecC
Confidence 6888888644
No 388
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=36.02 E-value=88 Score=21.93 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+.| .+.|++.++|-+.+-.+.......--+-.--..|...++.||++..
T Consensus 58 v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 58 VVALVAEQAQ-GRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp HHHHHHHHHT-TSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4444444332 234444333222455444 5678889999999987654322211111222457777899999874
No 389
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=35.92 E-value=98 Score=20.75 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=5.0
Q ss_pred HHhhcCCCcEEE
Q 031168 145 YVVNNGSCPVTV 156 (164)
Q Consensus 145 ~l~~~~~~pVlv 156 (164)
.+......||++
T Consensus 73 ~i~~~~~ipvi~ 84 (247)
T 3tdn_A 73 FVRPLTTLPIIA 84 (247)
T ss_dssp HHGGGCCSCEEE
T ss_pred HHHHhCCCCEEE
Confidence 333344444443
No 390
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=35.50 E-value=83 Score=19.83 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=25.5
Q ss_pred cCceEEEEEeeCC--hhHHHHHHhhhcCCcEEEEeec
Q 031168 95 KQIVVVMKIFWGD--PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 95 ~~~~~~~~~~~g~--~~~~I~~~a~~~~~dliVig~~ 129 (164)
.|++++.. ..+. -...|.+..++.++|+||--..
T Consensus 56 ~Gl~v~~v-~k~~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 56 TGMNVNAM-LSGPMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HCCCCEEE-CCGGGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCceeEEE-EecCCCCCchHHHHHHCCCccEEEEcCC
Confidence 68888764 3332 2357999999999999998765
No 391
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=35.22 E-value=1e+02 Score=20.86 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcCc-eEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQI-VVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+.+.|. ++......++.. ...++.....++|-||+........ ....+ .+....+||+++.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-----~~~~~-~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 18 SVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA-----GTVIE-KARGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH-----HHHHH-HHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh-----HHHHH-HHHHCCCcEEEec
Confidence 4567777788888886 665443334543 3345566667899998854322110 11222 3455789998885
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 92 ~ 92 (309)
T 2fvy_A 92 K 92 (309)
T ss_dssp S
T ss_pred C
Confidence 4
No 392
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=34.87 E-value=47 Score=22.68 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
.++++...+.++|+|.+|-..--..... + .....+-. ...|+++.+..
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~~-~-~~v~~ir~-~~~Pivlm~y~ 70 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDNV-L-RMMSKVRR-FLVPCVLEVSA 70 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHHH-H-HHHHHHTT-SSSCEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH-H-HHHHHhhC-cCCCEEEecCc
Confidence 4566777777889999886311111111 1 23333433 57788876643
No 393
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=34.75 E-value=1.2e+02 Score=21.25 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=18.7
Q ss_pred EEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 8 GVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 8 Lv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
+++..++..+.-+...|..++...|..+.++..
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 344455555555666666666545656666553
No 394
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=34.67 E-value=50 Score=23.61 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=34.7
Q ss_pred ceEEEEEeeC----ChhHHHHHHhhhcCCcEEEEeecC-C-CccceecccchhHHHhhcCCCcEEEEcC
Q 031168 97 IVVVMKIFWG----DPREKICEAIDKIPLSCLVIGNRG-L-GKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 97 ~~~~~~~~~g----~~~~~I~~~a~~~~~dliVig~~~-~-~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+++-....+ .+..+.++..++ +|+||+|..+ . |-...+++..+.+.| +.+ |++.|.+
T Consensus 158 ~~I~~v~l~~~~~~~a~p~vl~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~Al-~~s--~kV~v~n 221 (311)
T 3c3d_A 158 PDVRGVDIRGVSEASISPKVLEAFEK--EENILIGPSNPITSIGPIISLPGMRELL-KKK--KVVAVSP 221 (311)
T ss_dssp SCEEEEEEETTTTCCCCHHHHHHHHH--CCEEEECSSCTTTTSHHHHHSTTHHHHH-HTS--EEEEECC
T ss_pred CCeeEEEEcCccCCCCCHHHHHHHHh--CCEEEECCCCCHHHHhhhcCchhHHHHH-HcC--CEEEEcc
Confidence 3444444443 345677777777 7999999763 2 233334556666664 444 7776655
No 395
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=34.59 E-value=1e+02 Score=20.53 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecC-CCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG-LGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~-~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+.+...++...+.|-++...+. |...+.+.+.+...++|-+++-... .......-.......++......+++++.
T Consensus 22 ~ell~~A~~La~~~g~~v~av~~-G~~~~~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~ 99 (217)
T 3ih5_A 22 LELLTKGRSLANELNCQLEAVVA-GTGLKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGA 99 (217)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEE-ESCCTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEE-CCCHHHHHHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44566666666666777766444 5435666677777799987776542 12211111223344455554556666654
No 396
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=34.56 E-value=81 Score=20.78 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHhcCce-EEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIV-VVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+..+.+++.+...|+. -...+..|+..+.+-... ...+|+|++...
T Consensus 91 ~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-~~~fD~V~~d~~ 138 (221)
T 3dr5_A 91 SEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-NDSYQLVFGQVS 138 (221)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-TTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-CCCcCeEEEcCc
Confidence 45666777777777765 345566777666543332 345899988654
No 397
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=34.55 E-value=1.2e+02 Score=21.50 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCceEEEEEe------eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIF------WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
..-.|.....+.|..+-..-. .|.......+..... +|.||+-.... ...+.+..++.+||+=
T Consensus 50 TR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVIN 118 (307)
T 3tpf_A 50 TRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAM-VDFVMMRVNKH---------ETLLEFARYSKAPVIN 118 (307)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHH-SSEEEEECSCH---------HHHHHHHHHCSSCEEE
T ss_pred hHHhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHHhCCCCEEe
Confidence 334445555566776544321 132222223333344 79999966532 3456788889999863
No 398
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=34.48 E-value=1.1e+02 Score=20.69 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchh
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVS 143 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~ 143 (164)
..++.+.+++.|..+-..+..+.+.+.+..+... +|+|.+-+-..+.-.+.|..+..
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~--~D~VlvmsV~pGfggQ~f~~~~l 151 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHK--ADKITVMTVDPGFAGQPFIPEML 151 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG--CSEEEEESSCTTCSSCCCCTTHH
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhc--CCEEEEeeeccCcCCccccHHHH
Confidence 5566677778898877766556777777766664 78886644434433333433333
No 399
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=34.42 E-value=46 Score=21.32 Aligned_cols=39 Identities=21% Similarity=0.028 Sum_probs=24.6
Q ss_pred CCceEEEEeCCC---hhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFS---ACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s---~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
...|||+-.... ..+..++++..+.+. .+.++.++.+.+
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~ 46 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISG 46 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH
Confidence 334787776443 356667777777666 567888777655
No 400
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=34.32 E-value=69 Score=18.52 Aligned_cols=72 Identities=7% Similarity=-0.042 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
...+.+...+...+- +.......+. .+.++..+..++|+|++...-.. .... ...+.+-.. ..+||+++...
T Consensus 14 ~~~~~l~~~l~~~~~-~~~v~~~~~~-~~al~~~~~~~~dlvilD~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 14 MLRQAMVQLIKLHGD-FEILADTDNG-LDAMKLIEEYNPNVVILDIEMPG-MTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHHHHSS-EEEEEEESCH-HHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHHhhCCC-cEEEEEcCCH-HHHHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 345556666655441 1221222343 44445556667999999876322 1111 234444443 35899888543
No 401
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=34.09 E-value=58 Score=21.45 Aligned_cols=24 Identities=17% Similarity=0.010 Sum_probs=15.3
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhc
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNV 28 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la 28 (164)
..+++++.|+.... .+++.+..+.
T Consensus 3 ~~~~ilalD~~~~~-~~~~~~~~~~ 26 (216)
T 1q6o_A 3 LPMLQVALDNQTMD-SAYETTRLIA 26 (216)
T ss_dssp CCEEEEEECCSSHH-HHHHHHHHHG
T ss_pred cCCeEEEECCCCHH-HHHHHHHHhc
Confidence 36899999997643 3555554443
No 402
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=34.07 E-value=96 Score=20.09 Aligned_cols=71 Identities=6% Similarity=-0.086 Sum_probs=41.1
Q ss_pred HHHHHHHHHHh-cCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh--cCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQ-KQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN--NGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~--~~~~pVlvv~~~ 160 (164)
..+.++..+.. .|+.+. ....+..+++........+|+|++...-.+. .. -.....+-. ...+||+++...
T Consensus 19 ~~~~l~~~L~~~~~~~v~--~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~-~G---~~~~~~lr~~~~~~~~ii~lt~~ 92 (225)
T 3klo_A 19 QSRLLKEALESKLPLALE--ITPFSELWLEENKPESRSIQMLVIDYSRISD-DV---LTDYSSFKHISCPDAKEVIINCP 92 (225)
T ss_dssp HHHHHHHHHHHHSSEEEE--EECGGGHHHHTTCSGGGGCCEEEEEGGGCCH-HH---HHHHHHHHHHHCTTCEEEEEEEC
T ss_pred HHHHHHHHHhhCCCceEE--EEeCCcHHHHHHHhhccCCCEEEEeCCCCCC-CH---HHHHHHHHHhhCCCCcEEEEECC
Confidence 45556666653 455543 2234556666666677789999998763221 11 123444544 456899888543
No 403
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=34.00 E-value=1.1e+02 Score=20.82 Aligned_cols=71 Identities=10% Similarity=0.089 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|..+......++. ...+++.....++|-||+...... ...-..+....+||+++-.
T Consensus 43 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~i~~ 114 (305)
T 3huu_A 43 SDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD--------DPIEHLLNEFKVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC--------cHHHHHHHHcCCCEEEECC
Confidence 556777778888888876653333332 345677777788999998543221 1122345567899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 115 ~ 115 (305)
T 3huu_A 115 S 115 (305)
T ss_dssp C
T ss_pred C
Confidence 3
No 404
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=33.96 E-value=80 Score=20.90 Aligned_cols=49 Identities=8% Similarity=0.039 Sum_probs=29.3
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.+.++.+.+.++|.|++..........-+.-.....+....++||+..-
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~G 205 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASG 205 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeC
Confidence 4556677777899998876544322211112344556666788888653
No 405
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=33.73 E-value=70 Score=22.23 Aligned_cols=72 Identities=10% Similarity=-0.012 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcC--CcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIP--LSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~--~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+.+.+.+.+.|+++......++... ..++.....+ +|-||+........ ....+ .+....+||+++
T Consensus 21 ~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~-----~~~~~-~~~~~~iPvV~~ 94 (332)
T 2rjo_A 21 TAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADA-----RVIVE-ACSKAGAYVTTI 94 (332)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHH-----HHHHH-HHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHH-----HHHHH-HHHHCCCeEEEE
Confidence 45667777778888988765544445433 3455555567 99988854321100 01122 234457899888
Q ss_pred cC
Q 031168 158 KQ 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 95 ~~ 96 (332)
T 2rjo_A 95 WN 96 (332)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 406
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=33.64 E-value=1.1e+02 Score=20.59 Aligned_cols=68 Identities=9% Similarity=0.095 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......+++. ..+++.....++|-||+....... . ....+ ..+||+++..
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~-----~~~~l---~~iPvV~~~~ 92 (288)
T 2qu7_A 23 TEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKF--Q-----MKREW---LKIPIMTLDR 92 (288)
T ss_dssp HHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCC--C-----CCGGG---GGSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCCh--H-----HHHHh---cCCCEEEEec
Confidence 4567777788888888776543334543 345565556789988886543221 1 11223 5688888754
No 407
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=33.57 E-value=1e+02 Score=20.35 Aligned_cols=71 Identities=6% Similarity=0.056 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
....+.+...+...|+.+. ...+. ++.++......+|+|++...-.. ... -.....+-.. ..+||+++...
T Consensus 33 ~~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvllD~~lp~-~~g---~~~~~~lr~~~~~~~ii~lt~~ 104 (250)
T 3r0j_A 33 ANIVELLSVSLKFQGFEVY---TATNG-AQALDRARETRPDAVILDVXMPG-MDG---FGVLRRLRADGIDAPALFLTAR 104 (250)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHHCCSEEEEESCCSS-SCH---HHHHHHHHHTTCCCCEEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEE---EECCH-HHHHHHHHhCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCCEEEEECC
Confidence 3455666777777777643 22343 44455556667999999876322 111 1234444443 36899888654
No 408
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=33.54 E-value=1.4e+02 Score=21.81 Aligned_cols=27 Identities=19% Similarity=-0.028 Sum_probs=18.0
Q ss_pred CCceEEEEeCCChh-hHHHHHHHHhhcc
Q 031168 3 GTRRVGVAVDFSAC-SKKALQWAADNVV 29 (164)
Q Consensus 3 ~~~~ILv~~d~s~~-~~~~l~~a~~la~ 29 (164)
.+|++|-.-|++.. -...++.|..+-.
T Consensus 22 ~~rh~lsi~dls~~ei~~ll~~A~~lk~ 49 (359)
T 1zq6_A 22 SLKHFLNTQDWSRAELDALLTQAALFKR 49 (359)
T ss_dssp -CCCBSCGGGSCHHHHHHHHHHHHHHHH
T ss_pred cCCCcCchhhCCHHHHHHHHHHHHHHHh
Confidence 35677766777764 4677888887743
No 409
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=33.36 E-value=96 Score=22.82 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC---C----hhHHHHHHhhhcCCcEEE-Eee
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG---D----PREKICEAIDKIPLSCLV-IGN 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g---~----~~~~I~~~a~~~~~dliV-ig~ 128 (164)
..+.+.+.+++.|+.+. +..| + ..+.+.+.+++.++|+|| +|.
T Consensus 60 ~~~~v~~~L~~~g~~~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 60 VYDQVVDSLKKHGIEWV--EVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp HHHHHHHHHHHTTCEEE--EECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCeEE--EecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 56777777777788764 3332 2 356677788899999888 554
No 410
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=33.34 E-value=1.2e+02 Score=21.48 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+. +.+.|++.++|-+.+..+.......--+=..-+.|...++.||++..
T Consensus 81 v~~~~v~~~~-grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 156 (314)
T 3qze_A 81 VIRRVVDQVK-GRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYN 156 (314)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444444332 23454433222244444 44678889999999987644332211111233457777899999874
No 411
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=33.16 E-value=72 Score=20.11 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=30.8
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
..+.+++.++.|..+...++ +++.|+..|+++.++.-.+..
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~-~~~~ak~~g~~vi~iT~~~~s 149 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLE-ALKKAKELNMLCLGLSGKGGG 149 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEEGGGT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCCc
Confidence 35678999999988877664 556788889988888665443
No 412
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=33.06 E-value=1e+02 Score=20.25 Aligned_cols=48 Identities=8% Similarity=0.130 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh---cCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliVig~~ 129 (164)
.+..+..++.+...|+.-...+..|+..+.+.+.... ..+|+|++...
T Consensus 107 ~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 107 PNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 4455666666666666433445667776655554332 45799888643
No 413
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=32.90 E-value=1.1e+02 Score=20.52 Aligned_cols=76 Identities=7% Similarity=0.106 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++.. ..+++.....++|-||+........... .... .-+....+||+++-.
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~--~~~~-~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPN--IGYY-LNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT--HHHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCc--HHHH-HHHHhcCCCEEEEec
Confidence 5677888888888899877655555543 3456666677899999865432211000 0112 234566899998854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 108 ~ 108 (298)
T 3tb6_A 108 S 108 (298)
T ss_dssp C
T ss_pred C
Confidence 3
No 414
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=32.87 E-value=96 Score=19.73 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKL 134 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~ 134 (164)
++.++.++..+... -.++....+| -.++++++.+++.+|+|.+....+
T Consensus 50 ~~R~~ml~~a~~~~-~~v~v~~~e~----~tvd~~~~l~~~~~I~G~d~~~d~ 97 (168)
T 3f3m_A 50 EERMDLIEQSVKHL-PNVKVHQFSG----LLVDYCEQVGAKTIIRGLRAVSDF 97 (168)
T ss_dssp HHHHHHHHHHTTTC-TTEEEEECCS----CHHHHHHHHTCCEEEEEECTTCCH
T ss_pred HHHHHhHHHHhcCC-CCEEEEEcCC----CHHHHHHHcCCCEEEEcCCchhhh
Confidence 44556666554331 1233333344 456677778889999998765544
No 415
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=32.86 E-value=21 Score=26.75 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEee------CChhHHHHHHhh-hcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW------GDPREKICEAID-KIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~I~~~a~-~~~~dliVig~~~~~ 132 (164)
+++.+.+.+..+...-+.-..+-. |+-.+.+.+.++ +.++.+|.+...+-.
T Consensus 83 ekL~~~i~~~~~~~~P~~I~v~~TC~~~iIGdDi~~v~~~~~~~~~ipVi~v~~~Gf~ 140 (460)
T 2xdq_A 83 EELKRLCLEIKRDRNPSVIVWIGTCTTEIIKMDLEGLAPKLEAEIGIPIVVARANGLD 140 (460)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEECHHHHHTTCCHHHHHHHHHHHHSSCEEEEECCTTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCHHHHHhhCHHHHHHHHhhccCCcEEEEecCCcc
Confidence 445555566555544443222221 655666666654 567888888777543
No 416
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=32.82 E-value=97 Score=21.20 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHH
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNY 145 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~ 145 (164)
..+..+.+++.|...-..+..+.+.+.+..+... +|+|.+.+-..+.-.+.|..+..++
T Consensus 123 ~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~--vD~VlvMsV~PGfgGQ~fi~~~l~K 181 (246)
T 3inp_A 123 IDRSLQLIKSFGIQAGLALNPATGIDCLKYVESN--IDRVLIMSVNPGFGGQKFIPAMLDK 181 (246)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGG--CSEEEEECSCTTC--CCCCTTHHHH
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhc--CCEEEEeeecCCCCCcccchHHHHH
Confidence 3444455567788777655556777777666664 6888776544443333344444433
No 417
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=32.77 E-value=1.4e+02 Score=21.46 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhc-CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQK-QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.+...+... ++++- ....+. .+.++..++.++|+|++...-.. ...+ ...+.+....++||+++-..
T Consensus 14 ~~r~~L~~~L~~~~g~~vv--~~a~~~-~eAl~~l~~~~pDlVllDi~mp~-~dGl---ell~~l~~~~p~pVIvlS~~ 85 (349)
T 1a2o_A 14 LMRQIMTEIINSHSDMEMV--ATAPDP-LVARDLIKKFNPDVLTLDVEMPR-MDGL---DFLEKLMRLRPMPVVMVSSL 85 (349)
T ss_dssp HHHHHHHHHHHTSTTEEEE--EEESSH-HHHHHHHHHHCCSEEEEECCCSS-SCHH---HHHHHHHHSSCCCEEEEECC
T ss_pred HHHHHHHHHHhcCCCcEEE--EEeCCH-HHHHHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHhcCCCcEEEEECC
Confidence 3556666666653 55421 222343 44445556667999999876322 1111 34566666667999888543
No 418
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=32.74 E-value=1e+02 Score=21.65 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
++-++.+++.+++.|+.+-+.+..-.-.+.+ .+. +|++=+|+..-.... ..+++. ...+||++=+.
T Consensus 77 ~~GL~~L~~~~~e~Glp~~Tev~d~~~v~~l----~~~-vd~lqIgA~~~~n~~------LLr~va-~~gkPVilK~G 142 (285)
T 3sz8_A 77 DEGLKIFAEVKARFGVPVITDVHEAEQAAPV----AEI-ADVLQVPAFLARQTD------LVVAIA-KAGKPVNVKKP 142 (285)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCSGGGHHHH----HTT-CSEEEECGGGTTCHH------HHHHHH-HTSSCEEEECC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH----HHh-CCEEEECccccCCHH------HHHHHH-ccCCcEEEeCC
Confidence 4677788999999999988766654333333 344 788888886433322 223333 46777776544
No 419
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=32.66 E-value=75 Score=18.42 Aligned_cols=39 Identities=3% Similarity=-0.043 Sum_probs=24.6
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
++|||++-...-.+.-.+......++..+-++.+-++..
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~ 41 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPE 41 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECS
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 466776654333333677777777877777776665543
No 420
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=32.63 E-value=1.4e+02 Score=21.60 Aligned_cols=66 Identities=9% Similarity=-0.055 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|..+...... .....++.....++|-||+... .......+....+||+++-.
T Consensus 40 ~~l~~gi~~~a~~~g~~~~i~~~~--~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 40 RQVVEGVGEYLQASQSEWDIFIEE--DFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECC---CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEecC--CccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEecC
Confidence 456777788888888876654432 2234456666778999998311 11223355667899988843
No 421
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=32.50 E-value=72 Score=18.16 Aligned_cols=72 Identities=8% Similarity=-0.019 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~ 158 (164)
....+.+...+...|... +..-+..++.++..+...+|++++...-.+. ... .....+-.. ..+|++++.
T Consensus 16 ~~~~~~l~~~L~~~g~~~---v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~-~g~---~~~~~l~~~~~~~~~~ii~~s 88 (129)
T 1p6q_A 16 VTSRLLLGDALQQLGFKQ---ITAAGDGEQGMKIMAQNPHHLVISDFNMPKM-DGL---GLLQAVRANPATKKAAFIILT 88 (129)
T ss_dssp HHHHHHHHHHHHTTTCSC---EECCSSHHHHHHHHHTSCCSEEEECSSSCSS-CHH---HHHHHHTTCTTSTTCEEEECC
T ss_pred HHHHHHHHHHHHHCCCcE---EEecCCHHHHHHHHHcCCCCEEEEeCCCCCC-CHH---HHHHHHhcCccccCCCEEEEe
Confidence 335566666676666521 1122334445566666779999998763221 111 234444432 357888775
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 89 ~~ 90 (129)
T 1p6q_A 89 AQ 90 (129)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 422
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.46 E-value=1e+02 Score=19.92 Aligned_cols=48 Identities=6% Similarity=0.106 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh---cCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliVig~~ 129 (164)
...++.+++.+...++.-...+..|+..+.+-..... ..+|+|++...
T Consensus 99 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 99 EKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp HHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred HHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 4566667777766666533445567766655444322 45788887543
No 423
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=32.43 E-value=35 Score=25.26 Aligned_cols=55 Identities=7% Similarity=-0.084 Sum_probs=35.7
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
.-.+.+.+.+++.++|-||.-...-=.........+.+.+.+...+|+|.+-.+.
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~ 375 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQ 375 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 4577888899999999999866532222222222233355577899999986443
No 424
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=32.40 E-value=35 Score=23.62 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=21.3
Q ss_pred EeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 103 IFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 103 ~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
...=|+..++++.|.+.++||||.=.
T Consensus 42 ~~alD~t~~vi~eAi~~gadlIitHH 67 (267)
T 2fyw_A 42 MVALDIREETVAEAIEKGVDLIIVKH 67 (267)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESS
T ss_pred EEEEcCCHHHHHHHHHCCCCEEEECC
Confidence 33348899999999999999999843
No 425
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=32.10 E-value=96 Score=19.53 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
..+.++..+++.|++++.... +...+++..+..++|+++.+.
T Consensus 28 ~~dl~~~~~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 28 DVDLWAAIAKELKLDYELKPM---DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp HHHHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSSSEEEEEE
T ss_pred eHHHHHHHHHHhCCEEEEEEC---CHHHHHHHHhCCCCCEEEEcC
Confidence 345555666666888877643 456677777788899987653
No 426
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=31.87 E-value=79 Score=24.42 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEe-----eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF-----WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
-..++.+++.+++.|..+..... .|++.+.|.+.+++.+++-|.+.....-. .++-+...+++|-+
T Consensus 66 ~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~e~r---------~~~~l~~~gi~v~~ 136 (522)
T 3zxs_A 66 LAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPGDWR---------LIEALEAMPLPVRF 136 (522)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCSCHH---------HHHHHHHSSSCEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcchHH---------HHHHHHHcCCcEEE
Confidence 44567777777778998887542 37899999999999999999997332211 12233344888888
Q ss_pred EcCC
Q 031168 157 VKQG 160 (164)
Q Consensus 157 v~~~ 160 (164)
++..
T Consensus 137 ~~~~ 140 (522)
T 3zxs_A 137 LPDD 140 (522)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 7754
No 427
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=31.85 E-value=1e+02 Score=19.61 Aligned_cols=79 Identities=20% Similarity=0.114 Sum_probs=48.3
Q ss_pred hhhhhcCCCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccch-hHHHhh
Q 031168 72 IMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSV-SNYVVN 148 (164)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~-~~~l~~ 148 (164)
+.+.+.....+...+.+++.+.+.|++++..-.. |...+.|-+... +.|-||+.....+. .|+ ....+.
T Consensus 24 EP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~--~~dgiIINpgA~TH------tSvAlrDAl~ 95 (156)
T 1gtz_A 24 QPEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARL--NHCGIVINPAAYSH------TSVAILDALN 95 (156)
T ss_dssp CHHHHCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHH--HCSEEEEECTTHHH------HCHHHHHHHH
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh--cCcEEEECchhhcc------ccHHHHHHHH
Confidence 3344444566788889999898889887764432 345555544433 37999997654332 122 233555
Q ss_pred cCC-CcEEEEc
Q 031168 149 NGS-CPVTVVK 158 (164)
Q Consensus 149 ~~~-~pVlvv~ 158 (164)
... +|++=|.
T Consensus 96 ~v~~~P~VEVH 106 (156)
T 1gtz_A 96 TCDGLPVVEVH 106 (156)
T ss_dssp TSTTCCEEEEE
T ss_pred hcCCCCEEEEE
Confidence 556 8887653
No 428
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=31.82 E-value=65 Score=22.55 Aligned_cols=51 Identities=6% Similarity=0.054 Sum_probs=32.3
Q ss_pred ChhHHH--HHHhhhcCCcEEEEeecCCCc-cc-eecccchhHHHhhcCCCcEEEEc
Q 031168 107 DPREKI--CEAIDKIPLSCLVIGNRGLGK-LK-RAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 107 ~~~~~I--~~~a~~~~~dliVig~~~~~~-~~-~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+.| .+.|++.++|-+.+-.+.... .. +-+. ..-..|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~-~~f~~va~a~~lPiilYn 130 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLV-KYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHH-HHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHH-HHHHHHHhhCCCCEEEEE
Confidence 444444 567888999999988775433 21 1111 222457777899999874
No 429
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=31.63 E-value=1.3e+02 Score=20.92 Aligned_cols=70 Identities=11% Similarity=0.187 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+.+.|..+......++... .+++.....++|-||+...... ......+.....+||+++.
T Consensus 74 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-------~~~~~~l~~~~~iPvV~~~ 145 (340)
T 1qpz_A 74 AEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-------EPLLAMLEEYRHIPMVVMD 145 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-------HHHHHHHHTTTTSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-------hHHHHHHHhhCCCCEEEEe
Confidence 45677777888888887665333335433 3455556678999888543211 0122223223678988874
No 430
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=31.57 E-value=1.2e+02 Score=20.47 Aligned_cols=71 Identities=10% Similarity=0.161 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+......++.. ..+++.....++|-||+....... . .... .+....+||+++..
T Consensus 36 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~-----~~~~-~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 36 TRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-H-----PFYQ-RWANDPFPIVALDR 108 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-C-----HHHH-TTTTSSSCEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-H-----HHHH-HHHhCCCCEEEECC
Confidence 4567777788888888776544334443 345566666789999885432211 0 1112 33456789888854
No 431
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=31.56 E-value=70 Score=20.39 Aligned_cols=39 Identities=18% Similarity=0.003 Sum_probs=29.4
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
..+.+++.++.+..+...++ +++.|+..++++.++.-.+
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~-~~~~ak~~g~~vI~IT~~~ 153 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILA-AFREAKAKGMTCVGFTGNR 153 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 34678999999988877664 5677888898887775543
No 432
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=31.47 E-value=1.2e+02 Score=21.20 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+. +.+.|++.++|-+.+..+....... -+. .--+.|...++.||++..
T Consensus 62 v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~lPiilYn 137 (300)
T 3eb2_A 62 VVRATIEAAQ-RRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIE-SYFRAIADAVEIPVVIYT 137 (300)
T ss_dssp HHHHHHHHHT-TSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHH-HHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEEE
Confidence 3444444332 24555444443355444 4467888999999998775433221 121 233567788899999885
No 433
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=31.38 E-value=88 Score=21.22 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=22.3
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhh-cccCCCEEEEE
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADN-VVRNGDHLILV 38 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~l-a~~~~~~l~~l 38 (164)
++.+.|+|.--.+...+..+..++.. .++.+-++..+
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 45677888777777666666555433 33455555555
No 434
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=31.34 E-value=96 Score=19.25 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=51.2
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
..|++..-+ ..+...++.+-.++.. ...+..+...+.... +..
T Consensus 2 igiii~sHg-~~A~gl~~~~~~i~G~-~~~i~av~~~~~~~~-----------------------------------~~~ 44 (150)
T 3ipr_A 2 LGIVIATHG-ALSDGAKDAATVIMGA-TENIETVNLNSGDDV-----------------------------------QAL 44 (150)
T ss_dssp CEEEEEEET-THHHHHHHHHHHHHSC-CCSEEEEEECTTCCH-----------------------------------HHH
T ss_pred CEEEEEECc-HHHHHHHHHHHHHcCC-CCCEEEEEecCCCCH-----------------------------------HHH
Confidence 578888877 6778788888777765 346777766544321 334
Q ss_pred HHHHHHHHHhc----CceEEEEEeeCChhHHHHHHhhhc----CCcEEEEee
Q 031168 85 LDIVNTVARQK----QIVVVMKIFWGDPREKICEAIDKI----PLSCLVIGN 128 (164)
Q Consensus 85 ~~~~~~~~~~~----~~~~~~~~~~g~~~~~I~~~a~~~----~~dliVig~ 128 (164)
.+++.+...+. |+=+-+.+.-|+|.........+. +.+.-|+..
T Consensus 45 ~~~i~~~i~~~~~~~gvlvLtDl~GGSp~n~a~~~~~~~~~~~~~~v~vI~G 96 (150)
T 3ipr_A 45 GGQIKTAIENVQQGDGVLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSG 96 (150)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESSTTSHHHHHHHHHHTTSCHHHHTTEEEEES
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHhhhhccCCCEEEEeC
Confidence 55555555442 333333233378888777776652 245655543
No 435
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=31.33 E-value=1.2e+02 Score=21.04 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-..+-..+..+. +.+.|++.++|-+.+-.+....... -+. ..-+.|...++.||++..
T Consensus 59 v~~~~~~~~~-gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~ia~a~~lPiilYn 134 (291)
T 3tak_A 59 VIKEIIRVAN-KRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLY-QHYKAIAEAVELPLILYN 134 (291)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhcCCCEEEEe
Confidence 4444444332 23454433322244444 4467888999999998765432221 111 233457778899999874
No 436
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=31.31 E-value=1.3e+02 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=13.6
Q ss_pred CceEEEEeCCChhhHHHHHHHHh
Q 031168 4 TRRVGVAVDFSACSKKALQWAAD 26 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~ 26 (164)
..++.|++|... ...+++.+-.
T Consensus 27 ~~~LivALD~~~-~~~al~l~~~ 48 (255)
T 3ldv_A 27 DPKVIVALDYDN-LADALAFVDK 48 (255)
T ss_dssp CCCEEEEECCSS-HHHHHHHHTT
T ss_pred CCCeEEEcCCCC-HHHHHHHHHH
Confidence 467999999875 3334444433
No 437
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=31.21 E-value=1.2e+02 Score=20.38 Aligned_cols=69 Identities=6% Similarity=-0.024 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|..+......+++. ..+++.....++|-||+...... ....+.+ . ..+||+++-.
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-------~~~~~~l-~-~~iPvV~~~~ 94 (285)
T 3c3k_A 24 AAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE-------LPELQNI-I-GAFPWVQCAE 94 (285)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG-------HHHHHHH-H-TTSSEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-------hHHHHHH-h-cCCCEEEEcc
Confidence 4566777777888888776544334543 34556666678999888543111 1122333 4 7899988854
No 438
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=31.10 E-value=1.5e+02 Score=21.43 Aligned_cols=61 Identities=11% Similarity=-0.042 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCceEEEEE------eeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 85 LDIVNTVARQKQIVVVMKI------FWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~------~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
.-.|.......|..+...- -.|.......+..... +|.||+-... ....+.+..++.+||+
T Consensus 78 R~SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~-~D~IviR~~~---------~~~~~~lA~~~~vPVI 144 (339)
T 4a8t_A 78 RVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRL-VDILMARVER---------HHSIVDLANCATIPVI 144 (339)
T ss_dssp HHHHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHH-CSEEEEECSS---------HHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEecCc---------HHHHHHHHHhCCCCEE
Confidence 3344455556676654431 1232333333333445 7999996553 2355678888999986
No 439
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=31.10 E-value=1.6e+02 Score=21.62 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=28.2
Q ss_pred HHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeec
Q 031168 90 TVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+.+++.|+.++.|.=+ |.+.+.|.+.....+++-|=-|.+
T Consensus 204 ~~ar~~Gl~~t~HAGE~~~p~~~i~~al~~lga~RIgHG~~ 244 (380)
T 4gxw_A 204 RDARAAGFRTTAHAGEFGMPWRNVETAVDLLHVDRVDHGYT 244 (380)
T ss_dssp HHHHHTTCEEEEEESCTTCCHHHHHHHHHTSCCSEEEECGG
T ss_pred HHHHHcCCCeeeeccccCCchHHHHHHHHHcCCccccccee
Confidence 4466789999988755 456777777777777777655544
No 440
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.08 E-value=81 Score=18.37 Aligned_cols=73 Identities=8% Similarity=0.105 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh----------cCCcEEEEeecCCCccceecccchhHHHhhc--
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK----------IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-- 149 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~----------~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-- 149 (164)
....+.+...+...|...... ...+..+.+ +.... ..+|+|++...-.. ... -.....+-..
T Consensus 16 ~~~~~~l~~~L~~~g~~~~v~-~~~~~~~al-~~l~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~ 89 (149)
T 1k66_A 16 DEDFSTFQRLLQREGVVNPIY-RCITGDQAL-DFLYQTGSYCNPDIAPRPAVILLDLNLPG-TDG---REVLQEIKQDEV 89 (149)
T ss_dssp HHHHHHHHHHHHHTTBCSCEE-EECSHHHHH-HHHHTCCSSSCGGGCCCCSEEEECSCCSS-SCH---HHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHcCCCceEE-EECCHHHHH-HHHHhcccccCcccCCCCcEEEEECCCCC-CCH---HHHHHHHHhCcc
Confidence 445666777777777632222 223443333 44443 67999999876322 111 1234444443
Q ss_pred -CCCcEEEEcCC
Q 031168 150 -GSCPVTVVKQG 160 (164)
Q Consensus 150 -~~~pVlvv~~~ 160 (164)
..+|++++-..
T Consensus 90 ~~~~~ii~~t~~ 101 (149)
T 1k66_A 90 LKKIPVVIMTTS 101 (149)
T ss_dssp GGGSCEEEEESC
T ss_pred cCCCeEEEEeCC
Confidence 45888887543
No 441
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=30.93 E-value=1.1e+02 Score=19.77 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+. .+.++......+|+|++...-... ..+ .....+-.. ..+||+++...
T Consensus 18 ~~~~~l~~~L~~~g~~v~---~~~~~-~~a~~~~~~~~~dlvllD~~l~~~-~g~---~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 18 DVLASLERGLRLSGFEVA---TAVDG-AEALRSATENRPDAIVLDINMPVL-DGV---SVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHSCCSEEEEESSCSSS-CHH---HHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHHHHhCCCEEE---EECCH-HHHHHHHHhCCCCEEEEeCCCCCC-CHH---HHHHHHHhcCCCCCEEEEEcC
Confidence 355566666666676543 23344 344455566789999998763321 111 234444443 46899888543
No 442
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=30.83 E-value=1.5e+02 Score=21.36 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=36.6
Q ss_pred CceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCc-cceecccchhHHHhh-cCCCcEEEEc
Q 031168 96 QIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGK-LKRAIMGSVSNYVVN-NGSCPVTVVK 158 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~-~~~~~~gs~~~~l~~-~~~~pVlvv~ 158 (164)
.+.+-.-+-..+..+. +.+.|++.++|-+.+-.+.... ...--+-.--..|.. .++.||++..
T Consensus 92 rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn 158 (344)
T 2hmc_A 92 GIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYN 158 (344)
T ss_dssp TCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEE
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 4554433322244444 4567888999999987765433 221111122345777 7899999864
No 443
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.77 E-value=1.4e+02 Score=20.87 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
.+.++.+.+.+.+.|+.+......++.. ..+++.....++|-||+...... ...-..+....+|++++
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~--------~~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS--------EAARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC--------HHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC--------HHHHHHHHhCCCCEEEE
Confidence 5577888888888888876544444443 34556666778999998643221 11223456678999888
No 444
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=30.72 E-value=1.2e+02 Score=19.99 Aligned_cols=48 Identities=6% Similarity=-0.043 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~ 129 (164)
.+..+.+.+.+.+.|..+......++.. ..+++.....++|-||+...
T Consensus 18 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 18 NLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4567777788888898766544334443 34566666778998887643
No 445
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=30.65 E-value=1.1e+02 Score=19.86 Aligned_cols=58 Identities=12% Similarity=-0.043 Sum_probs=34.9
Q ss_pred cCceEEEEEeeCC--hhHHHHHHhhhcCCcEEEEeec--CCCccceecccchhHHHhhcCCCcEE
Q 031168 95 KQIVVVMKIFWGD--PREKICEAIDKIPLSCLVIGNR--GLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 95 ~~~~~~~~~~~g~--~~~~I~~~a~~~~~dliVig~~--~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
.|++++.. ..+. -...|.+..++.++|+||--.. +..+. .--|....+++-.-.+|++
T Consensus 72 ~Gl~v~~v-~k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h--~~D~~~IRR~A~~~~IP~~ 133 (178)
T 1vmd_A 72 LGLKVHRL-KSGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAH--DVDVKALIRIATVYNIPVA 133 (178)
T ss_dssp HCCCCEEC-SCGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTT--SCCHHHHHHHHHHTTCCEE
T ss_pred hCceeEEE-eecCCCCCchHHHHHHCCCccEEEEccCccCCCcc--cccHHHHHHHHHHcCCCEE
Confidence 68887753 3332 2357999999999999998765 32221 1123344444444556654
No 446
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=30.55 E-value=1.4e+02 Score=21.06 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=23.6
Q ss_pred CceEEEEEeeC-C--hhHHHHHHhhhcCCcEEEEeec
Q 031168 96 QIVVVMKIFWG-D--PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 96 ~~~~~~~~~~g-~--~~~~I~~~a~~~~~dliVig~~ 129 (164)
++++..++..+ + ...++.+.+.+.++|.|++..+
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 56766665543 2 3456778888899999998654
No 447
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.54 E-value=81 Score=18.16 Aligned_cols=70 Identities=7% Similarity=-0.039 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
...+.+...+...|..+. ...+. .+.++......+|+|++...-.. .... ...+.+-. ...+|++++...
T Consensus 14 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 14 AILDSTKQILEFEGYEVE---IAATA-GEGLAKIENEFFNLALFXIKLPD-MEGT---ELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHSCCSEEEECSBCSS-SBHH---HHHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHHHHHHCCceEE---EeCCH-HHHHHHHhcCCCCEEEEecCCCC-CchH---HHHHHHHhhCCCCcEEEEecc
Confidence 345566666666676543 23333 34445556677999999876322 1111 23444443 346888887543
No 448
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=30.28 E-value=1.6e+02 Score=21.64 Aligned_cols=69 Identities=4% Similarity=0.036 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-------ChhHHHHHHhhhcCCc---EE-EEeecCCCccceecccchhHHHh--hcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-------DPREKICEAIDKIPLS---CL-VIGNRGLGKLKRAIMGSVSNYVV--NNG 150 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~I~~~a~~~~~d---li-Vig~~~~~~~~~~~~gs~~~~l~--~~~ 150 (164)
..+.+.+.+.+.|+++...+..+ +..+.+.+.+.+.++| +| -+|... .++.+..+. ..-
T Consensus 77 ~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGs--------v~D~ak~~Aa~~~r 148 (390)
T 3okf_A 77 YAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGV--------IGDLVGFAAACYQR 148 (390)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHH--------HHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcH--------HhhHHHHHHHHhcC
Confidence 66778888888899887665543 2356777788888884 33 344321 133444442 345
Q ss_pred CCcEEEEcCC
Q 031168 151 SCPVTVVKQG 160 (164)
Q Consensus 151 ~~pVlvv~~~ 160 (164)
..|++.||-.
T Consensus 149 gip~I~IPTT 158 (390)
T 3okf_A 149 GVDFIQIPTT 158 (390)
T ss_dssp CCEEEEEECS
T ss_pred CCCEEEeCCC
Confidence 6888888753
No 449
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=30.24 E-value=1.1e+02 Score=20.70 Aligned_cols=17 Identities=18% Similarity=-0.019 Sum_probs=6.9
Q ss_pred HHHHHHhhhcCCcEEEE
Q 031168 110 EKICEAIDKIPLSCLVI 126 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVi 126 (164)
+.+.+..+..+.-+++.
T Consensus 64 ~~i~~i~~~~~iPvi~~ 80 (266)
T 2w6r_A 64 EMIRFVRPLTTLPIIAS 80 (266)
T ss_dssp HHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 33333344434444443
No 450
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=30.23 E-value=1.5e+02 Score=21.11 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCceEEEE------EeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 85 LDIVNTVARQKQIVVVMK------IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~------~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
.-.|.....+.|..+-.. +-.|.......+..... +|.||+-.... ...+.+..++.+||+
T Consensus 60 R~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 126 (309)
T 4f2g_A 60 RLSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRM-VDIIMIRTFEQ---------DIIQRFAENSRVPVI 126 (309)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSCEETBEECHHHHHHHHHHH-CSEEEEECSCH---------HHHHHHHHTCSSCEE
T ss_pred HhhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCCH---------HHHHHHHHhCCCCEE
Confidence 334444555566654432 22242222233333344 79999976532 355668888999986
No 451
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=30.21 E-value=1.2e+02 Score=19.97 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--------------cCCcEEEEee
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--------------IPLSCLVIGN 128 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--------------~~~dliVig~ 128 (164)
....+..++.+...|+.-...+..++..+.+.+.... ..+|+|++..
T Consensus 95 ~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~ 155 (239)
T 2hnk_A 95 EEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDA 155 (239)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeC
Confidence 4455666666666665433445567766655544322 4578888864
No 452
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=30.16 E-value=64 Score=22.53 Aligned_cols=51 Identities=4% Similarity=-0.005 Sum_probs=32.3
Q ss_pred ChhHHH--HHHhhhcCCcEEEEeecCCCc-cc-eecccchhHHHhhcCCCcEEEEc
Q 031168 107 DPREKI--CEAIDKIPLSCLVIGNRGLGK-LK-RAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 107 ~~~~~I--~~~a~~~~~dliVig~~~~~~-~~-~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+.| .+.|++.++|-+.+-.+.... .. +-+. ..-..|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~-~~f~~va~a~~lPiilYn 130 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLA-KYYEEIARISSHSLYIYN 130 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHH-HHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHH-HHHHHHHHhcCCCEEEEE
Confidence 444444 567888999999987765433 11 1111 222457778899999874
No 453
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=30.14 E-value=1.3e+02 Score=20.52 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEe-eCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF-WGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+-+.+.+++.|+++..... .+++.. ..++.....++|-||+......... ...+ .+....+||+++-
T Consensus 16 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 16 SQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI-----PTIK-KALEMGIPVVTLD 89 (313)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHHH-HHHHCCCeEEEeC
Confidence 34566677777778887665432 235543 3455555567999998654322111 1222 3345689998885
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 90 ~ 90 (313)
T 2h3h_A 90 T 90 (313)
T ss_dssp S
T ss_pred C
Confidence 4
No 454
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=29.94 E-value=1.4e+02 Score=20.64 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHhc-CceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQK-QIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+.+. |+.+......++... ..++.....++|-||+........ ....+ .+....+||+++.
T Consensus 21 ~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-----~~~~~-~~~~~~iPvV~~~ 94 (325)
T 2x7x_A 21 HKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPM-----TPIVE-EAYQKGIPVILVD 94 (325)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHH-----HHHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH-----HHHHH-HHHHCCCeEEEeC
Confidence 34566677777777 887665444445533 345555567899998864321100 01122 2345689998885
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 95 ~ 95 (325)
T 2x7x_A 95 R 95 (325)
T ss_dssp S
T ss_pred C
Confidence 4
No 455
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=29.93 E-value=82 Score=18.04 Aligned_cols=72 Identities=10% Similarity=0.150 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~ 160 (164)
....+.+...+.+.|..+..... +..+ ..+..++..+|+|++...-... .. -...+.+-... .+|++++...
T Consensus 11 ~~~~~~l~~~L~~~g~~v~~~~~--~~~~-a~~~~~~~~~dlii~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 11 PLAIAAIRNLLIKNDIEILAELT--EGGS-AVQRVETLKPDIVIIDVDIPGV-NG---IQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEES--SSTT-HHHHHHHHCCSEEEEETTCSSS-CH---HHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHHHHHHhhCCcEEEEEcC--CHHH-HHHHHHhcCCCEEEEecCCCCC-Ch---HHHHHHHHhcCCCCeEEEEeCC
Confidence 34556677777777754432222 3322 3334445679999998763321 11 12344444433 5888887543
No 456
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=29.82 E-value=1.3e+02 Score=20.27 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|..+......++. ...+++.....++|-||+....... ...+ .+....+||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~l~~~~iPvV~~~~ 95 (287)
T 3bbl_A 24 DQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-------PRVQ-FLLKQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-------HHHH-HHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-------HHHH-HHHhcCCCEEEECC
Confidence 557777888888888876543222333 3456666667789998886442221 1223 34456899988854
No 457
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=29.80 E-value=69 Score=22.55 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=22.2
Q ss_pred CCCCceEEEEeCCChh-hHHHHHHHHhhcccCCCEEEEE
Q 031168 1 MDGTRRVGVAVDFSAC-SKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~-~~~~l~~a~~la~~~~~~l~~l 38 (164)
|++|++|++-...... ....++.........+.++.+.
T Consensus 1 m~~m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~ 39 (307)
T 1u0t_A 1 MTAHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVL 39 (307)
T ss_dssp ----CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 7788999998886553 3455666666666667665543
No 458
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=29.71 E-value=90 Score=18.46 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
++..+.+.+.+.+.|++++..-....... .-.++|+||+|.+..
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~------~l~~~d~iiig~pty 56 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVNID------ELLNEDILILGCSAM 56 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCCHH------HHTTCSEEEEEECCB
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCCHH------HHhhCCEEEEEcCcc
Confidence 55667777777777887766544332222 224579999998754
No 459
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=29.69 E-value=1.4e+02 Score=20.84 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-..+-..+..+. +.+.|++.++|-+.+-.+.......--+=.--+.|...++.||++..
T Consensus 60 v~~~~~~~~~-grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn 135 (292)
T 3daq_A 60 ILKTVIDLVD-KRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYN 135 (292)
T ss_dssp HHHHHHHHHT-TSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444332 24555443333345444 44678889999999887644332211111223456677789999874
No 460
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=29.67 E-value=1.1e+02 Score=19.39 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=43.9
Q ss_pred hcCCCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEeecCCCccceecccch-hHHHhhcCCC
Q 031168 76 YGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGNRGLGKLKRAIMGSV-SNYVVNNGSC 152 (164)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig~~~~~~~~~~~~gs~-~~~l~~~~~~ 152 (164)
+.....+...+.+++.+.+.|++++..- .+-..+|++...+ .+.|-||+.....+. .|+ ....+....+
T Consensus 23 YG~~Tl~di~~~l~~~a~~~g~~l~~~Q--SN~EGeLId~Ih~a~~~~dgiIINpgA~TH------tSvAlrDAl~~v~~ 94 (154)
T 1uqr_A 23 YGSQTLSDIEQHLQQSAQAQGYELDYFQ--ANGEESLINRIHQAFQNTDFIIINPGAFTH------TSVAIRDALLAVSI 94 (154)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCEEEEEE--CSSHHHHHHHHHHTTTTCCEEEEECTTHHH------HCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEe--eCCHHHHHHHHHHhhhcCcEEEECcchhcc------chHHHHHHHHhCCC
Confidence 3334567788888888888888776543 3333344433222 248999997654332 122 2335555678
Q ss_pred cEEEEc
Q 031168 153 PVTVVK 158 (164)
Q Consensus 153 pVlvv~ 158 (164)
|++=|.
T Consensus 95 P~VEVH 100 (154)
T 1uqr_A 95 PFIEVH 100 (154)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 887553
No 461
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=29.62 E-value=76 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=6.1
Q ss_pred hhcCCcEEEEeec
Q 031168 117 DKIPLSCLVIGNR 129 (164)
Q Consensus 117 ~~~~~dliVig~~ 129 (164)
++.+.++-|+|+.
T Consensus 84 ~~v~~~~~iVGWY 96 (187)
T 2o95_A 84 KKVNARERIVGWY 96 (187)
T ss_dssp HTTSSSCEEEEEE
T ss_pred HHhCCCCCEEEEE
Confidence 3334455555554
No 462
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=29.59 E-value=1.2e+02 Score=19.71 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh---cCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliVig~~ 129 (164)
...++.+++.+...++.-...+..|+..+.+-..... ..+|+|++...
T Consensus 93 ~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~ 143 (221)
T 3u81_A 93 PDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHW 143 (221)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSC
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCC
Confidence 4466666776666676433446677776654433321 46899998753
No 463
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase; fructose-1,6-/sedoheptulose-1,7-bisphosphatase, hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB: 3rpl_A*
Probab=29.55 E-value=1.5e+02 Score=21.75 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+.+-+.+++.|..+.. +-.||++..|.-.-...++|+++ |..
T Consensus 214 ~~lI~eiR~~GARV~L-I~DGDVa~ai~~~~~~sgvD~~m-GiG 255 (379)
T 3roj_A 214 KELIQEIRNAGARVRL-ISDGDVSAAISCAFSGTNIHALM-GIG 255 (379)
T ss_dssp HHHHHHHHHHTCEEEE-ESSCHHHHHHHTTSBTSSCCEEE-EEE
T ss_pred HHHHHHHHHcCCeEEE-eCcCcHHHHHHHhcCCCCeeEEE-ECC
Confidence 3344445566888775 66789998888777778888876 543
No 464
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=29.49 E-value=1.1e+02 Score=21.70 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+. +.+.|++.++|-+++-.+.......--+=.--+.|...++.||++..
T Consensus 82 v~~~~v~~~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 157 (315)
T 3na8_A 82 VVDFTLKTVA-HRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYN 157 (315)
T ss_dssp HHHHHHHHHT-TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3344444332 23554443332344444 44678889999999987654332211111233457778899999875
No 465
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=29.41 E-value=1.6e+02 Score=21.23 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-C----Ch---------hHHHHHHhh-----hcCCcEEEEeecCCCc-cceeccc-
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-G----DP---------REKICEAID-----KIPLSCLVIGNRGLGK-LKRAIMG- 140 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-g----~~---------~~~I~~~a~-----~~~~dliVig~~~~~~-~~~~~~g- 140 (164)
...+.++.+.|++.|+++-.++.. + +. .+.|.+.++ +.++|++=+-..+... ...+--|
T Consensus 146 ~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~ 225 (332)
T 3iv3_A 146 QAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGE 225 (332)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSC
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhccccccc
Confidence 457788888999999997776543 2 21 122444444 4599999887665332 1111000
Q ss_pred ---------chhHHHhhcCCCcEEEEcCC
Q 031168 141 ---------SVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 141 ---------s~~~~l~~~~~~pVlvv~~~ 160 (164)
..-.++...++.|++++...
T Consensus 226 ~~y~~~ea~~~f~~~~~a~~~P~v~lsgG 254 (332)
T 3iv3_A 226 VVYSKEEAAQAFREQEASTDLPYIYLSAG 254 (332)
T ss_dssp CCBCHHHHHHHHHHHHHTCSSCEEEECTT
T ss_pred ccccHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 01345667889999887543
No 466
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=29.41 E-value=71 Score=20.97 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=27.0
Q ss_pred CCceEEEEeCCCh-----hhHHHHHHHHhhcccC--CCEEEEEEEecCC
Q 031168 3 GTRRVGVAVDFSA-----CSKKALQWAADNVVRN--GDHLILVTVVPEG 44 (164)
Q Consensus 3 ~~~~ILv~~d~s~-----~~~~~l~~a~~la~~~--~~~l~~l~v~~~~ 44 (164)
||.|||+-..... .+..++++.++.++.. +.++.++.+.+..
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~ 51 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEE 51 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSC
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 3467777654332 2566677777776554 7899999887644
No 467
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=29.31 E-value=64 Score=22.46 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=32.1
Q ss_pred ChhHH--HHHHhhhcCCcEEEEeecCCCc-cc-eecccchhHHHhhcCCCcEEEEc
Q 031168 107 DPREK--ICEAIDKIPLSCLVIGNRGLGK-LK-RAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 107 ~~~~~--I~~~a~~~~~dliVig~~~~~~-~~-~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+..+. +.+.|++.++|-+.+-.+.... .. +-+. ..-..|...++.||++..
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~-~~f~~va~a~~lPiilYn 129 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIA-KYFRDLCSAVSIPVFLYN 129 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHH-HHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHH-HHHHHHHHhcCCCEEEEe
Confidence 44444 4567888999999998775443 21 1111 222457777899999874
No 468
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=29.10 E-value=1.4e+02 Score=21.54 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=26.5
Q ss_pred ceEEEEeCCChhhHHHHHHHHhh---cccCCCEEEEEEE
Q 031168 5 RRVGVAVDFSACSKKALQWAADN---VVRNGDHLILVTV 40 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~l---a~~~~~~l~~l~v 40 (164)
++|++++|++.....+...+... ....+..+.++..
T Consensus 207 ~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~l 245 (338)
T 1dd9_A 207 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFL 245 (338)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEE
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 68999999999888888887776 3334556665543
No 469
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=29.09 E-value=1.7e+02 Score=21.40 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhc------CceEEEEEeeC-C------hhHHHHHHhhhcC--C---cEEE-EeecCCCccceecccchhH
Q 031168 84 TLDIVNTVARQK------QIVVVMKIFWG-D------PREKICEAIDKIP--L---SCLV-IGNRGLGKLKRAIMGSVSN 144 (164)
Q Consensus 84 ~~~~~~~~~~~~------~~~~~~~~~~g-~------~~~~I~~~a~~~~--~---dliV-ig~~~~~~~~~~~~gs~~~ 144 (164)
..+.+.+.+.+. ++.+......+ . ..+.+.+.+.+.+ + |+|| +|... .++.+.
T Consensus 51 ~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIalGGGs--------v~D~ak 122 (393)
T 1sg6_A 51 YTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGV--------IGDLTG 122 (393)
T ss_dssp HHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHH--------HHHHHH
T ss_pred HHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEEECCcH--------HHHHHH
Confidence 445555555554 67765444433 2 2477788888888 8 8777 44331 133444
Q ss_pred HHh--hcCCCcEEEEcC
Q 031168 145 YVV--NNGSCPVTVVKQ 159 (164)
Q Consensus 145 ~l~--~~~~~pVlvv~~ 159 (164)
.+. ..-.+|++.||-
T Consensus 123 ~~Aa~~~rgip~i~IPT 139 (393)
T 1sg6_A 123 FVASTYMRGVRYVQVPT 139 (393)
T ss_dssp HHHHHGGGCCEEEEEEC
T ss_pred HHHHHhcCCCCEEEECC
Confidence 444 244688888875
No 470
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=28.96 E-value=1.3e+02 Score=20.11 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhh----hcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAID----KIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~----~~~~dliVig~~ 129 (164)
.+..+..++.+...|+.-...+..|+..+.+-.... ...+|+|++...
T Consensus 114 ~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~ 165 (247)
T 1sui_A 114 KENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165 (247)
T ss_dssp CHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc
Confidence 445666666676667743445667777665544431 345899998654
No 471
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=28.87 E-value=78 Score=19.84 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=28.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
..+.+++.++.+......++ +++.|+..++++.++.-..
T Consensus 81 ~~~d~vi~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 81 EKDDLLILISGSGRTESVLT-VAKKAKNINNNIIAIVCEC 119 (180)
T ss_dssp CTTCEEEEEESSSCCHHHHH-HHHHHHTTCSCEEEEESSC
T ss_pred CCCCEEEEEeCCCCcHHHHH-HHHHHHHCCCcEEEEeCCC
Confidence 34678999999988876665 5577888899887775543
No 472
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=28.80 E-value=1.3e+02 Score=20.04 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+..+.+++.+++.|++++...... ....+.....+.|+.+.|...
T Consensus 143 ~~a~~iq~~l~~iGi~v~i~~~~~---~~~~~~~~~~~~d~~~~~w~~ 187 (258)
T 3lvu_A 143 TVLEIYTRALERLGIAAQIEKVDN---AQYTARVAELDFDLTPFRRDL 187 (258)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEECH---HHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCeeEEEecCH---HHHHHHhccCCccEEEecCCC
Confidence 455667777777899988876542 234444466778999998753
No 473
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=28.80 E-value=1.3e+02 Score=19.96 Aligned_cols=70 Identities=9% Similarity=0.037 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|..+......++.. ...++.....++|-||+...... ....+ .+....+||+++-.
T Consensus 19 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-------~~~~~-~l~~~~iPvV~~~~ 90 (275)
T 3d8u_A 19 AHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-------QRTHQ-LLEASNTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-------HHHHH-HHHHHTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-------HHHHH-HHHhCCCCEEEEee
Confidence 4466777777777887765543334443 34556666677887777543221 11222 23445788888743
No 474
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=28.74 E-value=38 Score=22.89 Aligned_cols=75 Identities=12% Similarity=-0.004 Sum_probs=41.1
Q ss_pred HHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhcCceE
Q 031168 20 ALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVV 99 (164)
Q Consensus 20 ~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
.++.++.+|+..|++...+++.+... . .. . + ..+...+.+..+.+.+++.|+.+
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~--------------------~-~~--~-~--~~~~~~~~l~~l~~~a~~~Gv~l 138 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMD--------------------E-EP--V-R--YISQLARRIRQVAVELLPLGMRV 138 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEES--------------------S-CH--H-H--HHHHHHHHHHHHHHHHGGGTCEE
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCC--------------------C-cc--h-h--hHHHHHHHHHHHHHHHHHcCCEE
Confidence 35668888888999876655432110 0 00 0 0 11123455666667777888887
Q ss_pred EEEEee-----------CChhHHHHHHhhhcC
Q 031168 100 VMKIFW-----------GDPREKICEAIDKIP 120 (164)
Q Consensus 100 ~~~~~~-----------g~~~~~I~~~a~~~~ 120 (164)
-.+... ....+.+.+..+..+
T Consensus 139 ~lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 170 (281)
T 3u0h_A 139 GLEYVGPHHLRHRRYPFVQSLADLKTFWEAIG 170 (281)
T ss_dssp EEECCCCGGGCCSSEECCCSHHHHHHHHHHHC
T ss_pred EEEeccccccccccccccCCHHHHHHHHHHcC
Confidence 666432 234455666666544
No 475
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=28.74 E-value=1.1e+02 Score=20.21 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=29.1
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
..+.++.+.+.++|.|++....+.....-+--....++....++||+..
T Consensus 151 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~ 199 (244)
T 2y88_A 151 LWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIAS 199 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEE
Confidence 3555666777789988766554332211111235566777778898765
No 476
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=28.63 E-value=1.2e+02 Score=19.48 Aligned_cols=66 Identities=12% Similarity=-0.057 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~ 160 (164)
...+.+...+...|+.+. ...+ ..+.++......+|+++ ..+.+.+ .....+-... .+||+++...
T Consensus 11 ~~~~~l~~~L~~~g~~v~---~~~~-~~~al~~l~~~~~dlvi--lp~~~g~------~~~~~lr~~~~~~~ii~lt~~ 77 (223)
T 2hqr_A 11 VLGGEIEKGLNVKGFMAD---VTES-LEDGEYLMDIRNYDLVM--VSDKNAL------SFVSRIKEKHSSIVVLVSSDN 77 (223)
T ss_dssp HHHHHHHHHHGGGTCCEE---EESS-HHHHHHHHTTSCCSEEE--ECCTTHH------HHHHHHHHHCTTSEEEEEESS
T ss_pred HHHHHHHHHHHHCCcEEE---EECC-HHHHHHHHhcCCCCEEE--eCCCCHH------HHHHHHHhCCCCCcEEEEECC
Confidence 355666777776777653 2233 34445556667899999 2222221 2344444444 6899888544
No 477
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=28.57 E-value=1.2e+02 Score=19.36 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHhcCc-eEEEEEeeC--ChhHHHHHHhhhcCCcEEE-Eeec--CCCccceecccchhHHHhh---cCCC
Q 031168 82 PETLDIVNTVARQKQI-VVVMKIFWG--DPREKICEAIDKIPLSCLV-IGNR--GLGKLKRAIMGSVSNYVVN---NGSC 152 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~g--~~~~~I~~~a~~~~~dliV-ig~~--~~~~~~~~~~gs~~~~l~~---~~~~ 152 (164)
+.+++-+.+.+.+.|+ +++...+-| ...-.+.+.++. +|.|| +|.- +.+..-++.-..++.-|.+ ....
T Consensus 33 ~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~--yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~v 110 (160)
T 2c92_A 33 DALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARN--HDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSST 110 (160)
T ss_dssp HHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTS--CSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhc--CCEEEEEeeeecCCchHHHHHHHHHHHHHHHHHhhcCC
Confidence 4577777777778888 566666667 333444455654 56555 5664 5555455555666666655 4578
Q ss_pred cEEE
Q 031168 153 PVTV 156 (164)
Q Consensus 153 pVlv 156 (164)
||..
T Consensus 111 PV~~ 114 (160)
T 2c92_A 111 PIAN 114 (160)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8754
No 478
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=28.54 E-value=1.1e+02 Score=19.27 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=46.9
Q ss_pred hhhhhcCCCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchh-HHHhh
Q 031168 72 IMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVS-NYVVN 148 (164)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~-~~l~~ 148 (164)
+.+.+.....+...+.+++.+.+.|++++..-.. |...+.|-+ |. .++|-||+.....+. .|++ ...+.
T Consensus 25 EP~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~-a~-~~~dgiiINpgA~TH------tSvAlrDAl~ 96 (153)
T 3lwz_A 25 EPEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQ-AR-GNTDFILINPAAFTH------TSVALRDALL 96 (153)
T ss_dssp SHHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH-HT-TTCSEEEEECGGGGG------TCHHHHHHHH
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHH-hh-hcCceEEEcccccee------chHHHHHHHH
Confidence 3444555566778888888888888877654332 344444443 32 358999997654332 1222 22445
Q ss_pred cCCCcEEEEc
Q 031168 149 NGSCPVTVVK 158 (164)
Q Consensus 149 ~~~~pVlvv~ 158 (164)
...+|++=|.
T Consensus 97 ~~~~P~VEVH 106 (153)
T 3lwz_A 97 GVQIPFIEIH 106 (153)
T ss_dssp HHTCCEEEEE
T ss_pred hcCCCEEEEE
Confidence 5678887553
No 479
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=28.49 E-value=1.2e+02 Score=23.41 Aligned_cols=44 Identities=7% Similarity=0.077 Sum_probs=33.0
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
.+....+.|...++..||.-+. + |.++..+.+ +.+|||+.+-+.
T Consensus 412 ia~aa~~~A~~l~a~aIv~~T~--s-------G~tA~~iSr~RP~~pI~a~T~~ 456 (526)
T 4drs_A 412 IACSAVESAHDVNAKLIITITE--T-------GNTARLISKYRPSQTIIACTAK 456 (526)
T ss_dssp HHHHHHHHHHHTTCSEEEEECS--S-------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEECC--C-------cHHHHHHHhhCCCCCEEEECCC
Confidence 4556677889999998887655 2 678888887 457999988654
No 480
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=28.41 E-value=1.2e+02 Score=19.29 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC--ChhHHHHHHhhh-----cCCcEEEE-eec--CCCccceecccchhHHHhh---
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG--DPREKICEAIDK-----IPLSCLVI-GNR--GLGKLKRAIMGSVSNYVVN--- 148 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~-----~~~dliVi-g~~--~~~~~~~~~~gs~~~~l~~--- 148 (164)
+.+++-+.+.+.+.|.+++...+-| ...-.+.+.++. .++|-||. |.- +.+..-++.-..++.-|.+
T Consensus 28 ~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~vsl 107 (157)
T 2i0f_A 28 DALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTDLSV 107 (157)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHh
Confidence 5577777777778887777777778 344455556666 67787664 553 5555555555666666554
Q ss_pred cCCCcEE
Q 031168 149 NGSCPVT 155 (164)
Q Consensus 149 ~~~~pVl 155 (164)
....||.
T Consensus 108 ~~~vPV~ 114 (157)
T 2i0f_A 108 EESIAIG 114 (157)
T ss_dssp HTTCCEE
T ss_pred hcCCCEE
Confidence 5678875
No 481
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=28.38 E-value=1.4e+02 Score=20.15 Aligned_cols=72 Identities=8% Similarity=-0.014 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHhcCceEEEEE--eeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKI--FWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+.+.+.+.+.|+.+.... ..++... ..++.....++|-||+......... ..... +....+||+++
T Consensus 17 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~-----~~~~~-~~~~~iPvV~~ 90 (288)
T 1gud_A 17 VDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV-----MPVAR-AWKKGIYLVNL 90 (288)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH-----HHHHH-HHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHHHH-HHHCCCeEEEE
Confidence 4466777777888888776544 3345433 3455556677999998643221111 11222 34467899888
Q ss_pred cC
Q 031168 158 KQ 159 (164)
Q Consensus 158 ~~ 159 (164)
-.
T Consensus 91 ~~ 92 (288)
T 1gud_A 91 DE 92 (288)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 482
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=28.25 E-value=71 Score=22.89 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=25.7
Q ss_pred CCCCceEEEEeCCChh-----------hH-HHHHHHHhhcc--cCCCEEEEEEEe
Q 031168 1 MDGTRRVGVAVDFSAC-----------SK-KALQWAADNVV--RNGDHLILVTVV 41 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~-----------~~-~~l~~a~~la~--~~~~~l~~l~v~ 41 (164)
|...|+|+|++.++.- .. .+-..|..++. ..+.+|.+.|=.
T Consensus 2 ~~~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGn 56 (317)
T 3kzf_A 2 MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGN 56 (317)
T ss_dssp -CCCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 7888999999876532 11 22344445555 356789888865
No 483
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=28.22 E-value=1.1e+02 Score=23.41 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=31.9
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQGI 161 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 161 (164)
.+....+.|...++..||+-+. + |.++..+.+. .+|||+.+-+..
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~--s-------G~ta~~isr~RP~~pI~a~t~~~ 427 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLST--S-------GTTPRLVSKYRPNCPIILVTRCP 427 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECS--S-------SHHHHHHHHTCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECC--C-------chHHHHHHhhCCCCCEEEEcCCH
Confidence 4555667788888888877554 2 6778878874 579999886543
No 484
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=28.20 E-value=59 Score=21.76 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=29.5
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
.+.+++.++.|..+...++ +++.|+..|+++.++.-.
T Consensus 108 ~~Dv~I~iS~SG~t~~~i~-~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 108 NKDVIMIISNSGRNTVPVE-MAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp TTCEEEEECSSCCSHHHHH-HHHHHHHHTCEEEEEECH
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 4579999999998887776 557788889998888654
No 485
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=28.15 E-value=1.7e+02 Score=21.09 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC---ChhHHHHHHhh---hcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG---DPREKICEAID---KIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~---~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..-.|...+.+.|..+...-..+ .-.+.|.+.++ .. +|.||+-.... ...+.+..++.+||+
T Consensus 58 TR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~lA~~~~vPVI 125 (333)
T 1duv_G 58 TRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM-YDGIQYRGYGQ---------EIVETLAEYASVPVW 125 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTT-CSEEEEECSCH---------HHHHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHh-CCEEEEEcCCc---------hHHHHHHHhCCCCeE
Confidence 33444555556677655432111 12334444433 44 79999965532 345667788889986
No 486
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=28.14 E-value=82 Score=22.24 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCceEEEEEeeCC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGD 107 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~ 107 (164)
++.+.+.+.+.+++ ..+..||
T Consensus 29 ~~~~~~~~~~~~~D--~vl~~GD 49 (333)
T 1ii7_A 29 FKNALEIAVQENVD--FILIAGD 49 (333)
T ss_dssp HHHHHHHHHHTTCS--EEEEESC
T ss_pred HHHHHHHHHhcCCC--EEEECCC
Confidence 33444444443433 3444454
No 487
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=28.07 E-value=1.4e+02 Score=20.81 Aligned_cols=61 Identities=7% Similarity=0.013 Sum_probs=35.8
Q ss_pred ceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCc-cc-eecccchhHHHhhcC---CCcEEEEc
Q 031168 97 IVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGK-LK-RAIMGSVSNYVVNNG---SCPVTVVK 158 (164)
Q Consensus 97 ~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~-~~-~~~~gs~~~~l~~~~---~~pVlvv~ 158 (164)
+++-.-+-..+..+. +.+.|++.++|-+.+-.+.... .. .-+. ..-..|...+ +.||++..
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~-~~f~~va~a~p~~~lPiilYn 140 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLF-AWFSAVFSKIGKDARDILVYN 140 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHH-HHHHHHHHHHCTTCCCEEEEE
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHH-HHHHHHHHhcCCCCCcEEEEE
Confidence 444433333345444 4567888999999998765433 11 1111 2224567777 79999874
No 488
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=28.00 E-value=45 Score=23.34 Aligned_cols=22 Identities=5% Similarity=-0.081 Sum_probs=19.5
Q ss_pred ChhHHHHHHhhhcCCcEEEEee
Q 031168 107 DPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~ 128 (164)
|+....++.|.+.++||||--.
T Consensus 46 D~t~~vv~eA~~~g~dlIItHH 67 (278)
T 3rxy_A 46 DIGPAELLLARQLGCDGVIAHH 67 (278)
T ss_dssp SCCHHHHHHHHHTTCSEEEESS
T ss_pred CCCHHHHHHHHHcCCCEEEECC
Confidence 8899999999999999998743
No 489
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=27.90 E-value=82 Score=22.64 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHhhc-CCCcEEEEcC
Q 031168 87 IVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
.+-+.+++.+.-+-..-..+ ....+|++.|++.+..+|+-.+.+..... .-++.......... ..+||.+--+
T Consensus 8 ~ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHlD 83 (323)
T 2isw_A 8 QMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHLD 83 (323)
T ss_dssp HHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 33444555666655444444 77999999999999999887766422111 12233555666666 7899877543
No 490
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=27.82 E-value=19 Score=20.57 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
..+.+...++..+ +....++|+.+.. +.-...++|++|+.....+... .......+-...++||=++
T Consensus 12 l~~~i~~l~~~~~--v~~v~LFGS~arG--~~~~~SDiDl~V~~~~~~~~~~---~~~l~~~l~~~l~~~vDlv 78 (98)
T 1wot_A 12 RREAVLSLCARHG--AVRVRVFGSVARG--EAREDSDLDLLVAFEEGRTLLD---HARLKLALEGLLGVRVDIV 78 (98)
T ss_dssp HHHHHHHHHHHHT--CSSCEECSHHHHT--CCCTTCCCEEEECCCSSCCHHH---HHHHHHHHHHHSCSCCEEE
T ss_pred HHHHHHHHHHHcC--CcEEEEEccccCC--CCCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHHcCCCEEEE
Confidence 3444555555555 3455778887765 2333578999997654332211 2234444444445666444
No 491
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=27.80 E-value=1.1e+02 Score=20.51 Aligned_cols=71 Identities=8% Similarity=-0.106 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC--ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG--DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+..+.+.+.+.+.|..+......+ +....+++.....++|-||+....... ..... ....++||+++..
T Consensus 28 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~-~~~~~iPvV~~~~ 99 (289)
T 3g85_A 28 SRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYD-------LEYLN-KASLTLPIILFNR 99 (289)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHH-------HHHHH-HCCCSSCEEEESC
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCccc-------HHHHH-hccCCCCEEEECC
Confidence 5577888888888888876554433 334556677777889999986432110 01111 2356799998865
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 100 ~ 100 (289)
T 3g85_A 100 L 100 (289)
T ss_dssp C
T ss_pred C
Confidence 3
No 492
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=27.74 E-value=53 Score=23.64 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=28.4
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEE
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l 38 (164)
++|++++|++.....+...++......+..+.++
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~ 229 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVI 229 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 6899999999998888888888877777776665
No 493
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=27.70 E-value=1.4e+02 Score=19.95 Aligned_cols=70 Identities=7% Similarity=-0.041 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
...+.+...+...|+.+. ...+. .+.++..+...+|+|++...-.. ...+ ..++.+-.. ..+||+++...
T Consensus 140 ~~~~~l~~~L~~~g~~v~---~a~~~-~eal~~l~~~~~dlvl~D~~mp~-~~G~---~l~~~ir~~~~~~piI~lt~~ 210 (254)
T 2ayx_A 140 INRRLLADQLGSLGYQCK---TANDG-VDALNVLSKNHIDIVLSDVNMPN-MDGY---RLTQRIRQLGLTLPVIGVTAN 210 (254)
T ss_dssp HHHHHHHHHHHHHTSEEE---EECCS-HHHHHHHHHSCCSEEEEEESSCS-SCCH---HHHHHHHHHHCCSCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEE---EECCH-HHHHHHHHhCCCCEEEEcCCCCC-CCHH---HHHHHHHhcCCCCcEEEEECC
Confidence 345667777777787643 22233 33444555667999999876322 1111 234444332 46899888543
No 494
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=27.62 E-value=1.3e+02 Score=19.55 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
..+.++..++..|++++.... +...+++..+..++|+++.+.
T Consensus 49 ~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 90 (249)
T 4f3p_A 49 DLDLWAEIAKGAGWTYKIQPM---DFAGLIPALQTQNIDVALSGM 90 (249)
T ss_dssp HHHHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSCSEEEEEE
T ss_pred hHHHHHHHHHHcCCceEEEec---CHHHHHHHHHCCCCCEEEecc
Confidence 455666666677998887664 446677777788899976543
No 495
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=27.59 E-value=1.8e+02 Score=21.15 Aligned_cols=27 Identities=19% Similarity=-0.040 Sum_probs=18.8
Q ss_pred CCCceEEEEeCCChh-hHHHHHHHHhhc
Q 031168 2 DGTRRVGVAVDFSAC-SKKALQWAADNV 28 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~-~~~~l~~a~~la 28 (164)
|.+|++|=.-|++.. -...++.|..+-
T Consensus 21 m~mkhlLsi~Dls~~ei~~ll~~A~~~k 48 (359)
T 3kzn_A 21 MSLKHFLNTQDWSRAELDALLTQAALFK 48 (359)
T ss_dssp --CCCBSCGGGSCHHHHHHHHHHHHHHH
T ss_pred CccccccchhhCCHHHHHHHHHHHHHHH
Confidence 356788877788864 567788888774
No 496
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=27.52 E-value=95 Score=23.26 Aligned_cols=13 Identities=31% Similarity=0.235 Sum_probs=9.5
Q ss_pred cCCCcEEEEcCCC
Q 031168 149 NGSCPVTVVKQGI 161 (164)
Q Consensus 149 ~~~~pVlvv~~~~ 161 (164)
+..+||++++...
T Consensus 137 ~~~ipV~~I~GNH 149 (431)
T 3t1i_A 137 NISIPVFSIHGNH 149 (431)
T ss_dssp CBCSCEEECCCSS
T ss_pred cCCCcEEEEccCC
Confidence 4579999997543
No 497
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=27.43 E-value=1.4e+02 Score=21.16 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH--HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK--ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-..+..+. +.+.|++.++|-+.+-.+.......--+=.--+.|...++.||++..
T Consensus 80 v~~~~v~~~~-grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 155 (315)
T 3si9_A 80 IIELCVEQVA-KRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYN 155 (315)
T ss_dssp HHHHHHHHHT-TSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3344444332 24554433322244444 44678899999999987654332211111223457777899999874
No 498
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=27.43 E-value=1.9e+02 Score=21.38 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEee---CChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW---GDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
+++.+.+.+.+.+.|++....-.. ......|+..+.+ +|-||+|++..+
T Consensus 280 e~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~--~~~ivlGspT~~ 331 (410)
T 4dik_A 280 ENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPD--SEALIFGVSTYE 331 (410)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTT--CSEEEEEECCTT
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHh--CCeEEEEeCCcC
Confidence 445677777777788876643332 2334555555544 799999998654
No 499
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=27.42 E-value=72 Score=22.72 Aligned_cols=71 Identities=17% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHhhcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+-+.+.+.+.-+-..-... ....+|++.|++.+..+|+-.+.+..... .-++......+.. ..+||.+--+
T Consensus 8 ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValHlD 80 (305)
T 1rvg_A 8 ILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVHLD 80 (305)
T ss_dssp HHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEEEE
T ss_pred HHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEECC
Confidence 3334455566554444444 77999999999999999888766432211 1233456666677 8899877533
No 500
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=27.38 E-value=1.6e+02 Score=20.82 Aligned_cols=73 Identities=11% Similarity=-0.018 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH--HHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI--CEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... ..+++-.-+-. +..+.| .+.|++.++|-+.+..+-......--+=.--+.|...++.||++..
T Consensus 70 v~~~~v~~~~-grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 70 EVRRTVEYVH-GRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp HHHHHHHHHT-TSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHhC-CCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3344444332 24555444432 554443 4678889999999976543321111111223456677789999875
Done!