BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031170
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAK 128
R+ +AQ N AL ++EL DP+ Y+ G +Y LDR +A + +A+
Sbjct: 8 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 65
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAK 128
R+ +AQ N AL ++EL DP+ Y+ G +Y LDR +A + +A+
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87
S EA + + G+ + I+ ++ALE+ D N + + + + Q + DE
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNA----EAWYNLGNAYYKQGDYDE 61
Query: 88 ALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139
A++ YQ+ LE+ DPN+ ++ G Y EA E + K +L P E
Sbjct: 62 AIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE 67
G +A +++ L +P S EA + + G+ + I+ ++ALE+
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PR 67
Query: 68 ARDVRFIMAQIKFLQKNVDEALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEF 126
+ + + + + Q + DEA++ YQ+ LE+ DP ++ G Y EA E +
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 127 AKYRQLSPK 135
K +L P+
Sbjct: 127 QKALELDPR 135
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 41 RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP 100
R EG A+I+ EA GN ++ + +R +M QIK + K DE L +Y + EI P
Sbjct: 159 RIAEGAAMIRTKGEA----GTGNVVEAVKHMRRVMEQIKQVTKMEDEELVAYGK-EIGAP 213
Query: 101 NDF 103
+
Sbjct: 214 VEL 216
>pdb|3ME7|A Chain A, Crystal Structure Of Putative Electron Transport Protein
Aq_2194 From Aquifex Aeolicus Vf5
pdb|3ME7|B Chain B, Crystal Structure Of Putative Electron Transport Protein
Aq_2194 From Aquifex Aeolicus Vf5
pdb|3ME8|A Chain A, Crystal Structure Of Putative Electron Transfer Protein
Aq_2194 From Aquifex Aeolicus Vf5
pdb|3ME8|B Chain B, Crystal Structure Of Putative Electron Transfer Protein
Aq_2194 From Aquifex Aeolicus Vf5
Length = 170
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 43 GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED 99
G+G V+K + +ED KL +A D RF+ A F+ NV L EL+I+D
Sbjct: 92 GKGWKVVKA-----KTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP--ELQIKD 141
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134
KF QK VD L E P Y+ +G +Y +L AKE+F K + L+P
Sbjct: 297 KFFQKAVD--------LNPEYP---PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134
KF QK VD L E P Y+ +G +Y +L AKE+F K + L+P
Sbjct: 293 KFFQKAVD--------LNPEYP---PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 337
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFA 127
+ + + + + Q + DEA++ YQ+ DPN+ ++ G Y EA E +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 128 KYRQLSPKKFEV 139
K +L P E
Sbjct: 68 KALELDPNNAEA 79
>pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIR|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
Length = 335
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 41 RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE 94
R EG A+I+ EA GN ++ R VR + I+ +Q+ DE + E
Sbjct: 144 RIWEGAAMIRTKGEA----GTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAE 193
>pdb|3K10|A Chain A, Crystal Structure Of Telomere Capping Protein Stn1 From
Saccharomyces Cerevisiae
Length = 179
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 61 DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
D KLKE R V +A F Q+NV +KS+ LE E D + L D+ +
Sbjct: 23 DLYKLKEVRSVVTSLASFLFQQQNVG-VMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKTS 81
Query: 121 EA 122
E
Sbjct: 82 ET 83
>pdb|3KEY|A Chain A, Crystal Structure Of S. Cerevisiae Stn1 C-Terminal
Length = 185
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 61 DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120
D KLKE R V +A F Q+NV +KS+ LE E D + L D+ +
Sbjct: 26 DLYKLKEVRSVVTSLASFLFQQQNVG-VMKSFDSLEKEAFRDLVNRLVSQGLIGLKDKTS 84
Query: 121 EA 122
E
Sbjct: 85 ET 86
>pdb|3KG6|A Chain A, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|B Chain B, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|C Chain C, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
pdb|3KG6|D Chain D, Dehydratase Domain From Curf Module Of Curacin Polyketide
Synthase
Length = 285
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 76 AQIKFLQKNVDEALKSYQELEIEDP----NDFRPYFC---KGMIYSLLDRNAEAKEEFAK 128
+IK +Q V A + + EI P N P + +G IY+ RN++AK + K
Sbjct: 84 TEIKTVQTVVSFAENNSYKFEIFSPSEGENQQTPQWVLHAQGKIYTEPTRNSQAKIDLEK 143
Query: 129 YRQLSPKKFEVEGYLRTPLSRMKLFGTN 156
Y+ + E+E + R S+ +G++
Sbjct: 144 YQAECSQAIEIEEHYREYRSKGIDYGSS 171
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 41 RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP 100
+ G+ + I+ ++ALE+ D N + + + Q + +A++ YQ+ DP
Sbjct: 21 KQGDYQKAIEYYQKALEL--DPNNA----SAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 101 NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134
N+ + ++ +G Y +A E++ K +L P
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87
S EA + + G+ + I+ ++ALE+ + + + + + Q + DE
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN------AEAWYNLGNAYYKQGDYDE 61
Query: 88 ALKSYQE-LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139
A++ YQ+ LE+ PN+ ++ G Y EA E + K +L P E
Sbjct: 62 AIEYYQKALELY-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132
I+ LQKNV L + LE++ D + C+G L R + K+ + +QL
Sbjct: 132 HIQLLQKNVRAQLVDMKRLEVDI--DIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,710,650
Number of Sequences: 62578
Number of extensions: 185034
Number of successful extensions: 544
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 53
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)