Query 031170
Match_columns 164
No_of_seqs 195 out of 1630
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 10:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1126 DNA-binding cell divis 99.8 2.3E-21 5E-26 143.0 7.6 145 1-151 359-537 (638)
2 TIGR00990 3a0801s09 mitochondr 99.8 6.5E-20 1.4E-24 140.9 15.9 131 2-138 338-468 (615)
3 PRK10370 formate-dependent nit 99.8 2.9E-19 6.4E-24 118.9 15.3 126 7-138 51-179 (198)
4 PRK15359 type III secretion sy 99.8 2.1E-19 4.6E-24 114.0 13.9 116 14-138 12-127 (144)
5 KOG4626 O-linked N-acetylgluco 99.8 1.6E-19 3.4E-24 133.3 13.0 130 1-136 292-421 (966)
6 TIGR00990 3a0801s09 mitochondr 99.8 7.4E-19 1.6E-23 135.1 15.5 130 1-136 371-500 (615)
7 KOG1126 DNA-binding cell divis 99.8 1E-19 2.2E-24 134.4 8.9 129 2-136 428-556 (638)
8 COG3063 PilF Tfp pilus assembl 99.8 2.6E-18 5.6E-23 113.2 14.2 132 1-138 41-174 (250)
9 KOG4626 O-linked N-acetylgluco 99.8 5.4E-19 1.2E-23 130.5 12.0 129 2-136 327-455 (966)
10 TIGR02552 LcrH_SycD type III s 99.8 6.7E-18 1.5E-22 106.1 14.5 117 16-138 4-120 (135)
11 TIGR02521 type_IV_pilW type IV 99.8 1E-17 2.2E-22 113.4 15.5 129 2-136 38-168 (234)
12 PRK15359 type III secretion sy 99.8 2.4E-18 5.2E-23 109.1 11.6 109 2-116 31-139 (144)
13 KOG1155 Anaphase-promoting com 99.8 5.1E-18 1.1E-22 121.4 13.7 125 1-131 370-494 (559)
14 PRK12370 invasion protein regu 99.8 1.6E-17 3.4E-22 126.2 15.0 122 9-136 318-440 (553)
15 PRK12370 invasion protein regu 99.8 2E-17 4.3E-22 125.7 15.5 131 1-137 344-475 (553)
16 PRK09782 bacteriophage N4 rece 99.8 1.9E-17 4.2E-22 131.5 15.7 125 7-138 588-712 (987)
17 TIGR02521 type_IV_pilW type IV 99.8 5.8E-17 1.3E-21 109.7 15.9 132 1-136 71-202 (234)
18 PRK15174 Vi polysaccharide exp 99.8 3.6E-17 7.9E-22 126.3 15.9 128 3-136 220-351 (656)
19 PRK11189 lipoprotein NlpI; Pro 99.8 7.7E-17 1.7E-21 113.8 14.6 121 3-130 72-192 (296)
20 PRK15174 Vi polysaccharide exp 99.7 7.2E-17 1.6E-21 124.6 15.3 131 1-137 252-386 (656)
21 KOG1155 Anaphase-promoting com 99.7 7.3E-17 1.6E-21 115.6 13.8 129 2-136 337-465 (559)
22 KOG1125 TPR repeat-containing 99.7 3.1E-17 6.8E-22 119.9 11.9 149 2-152 292-511 (579)
23 PRK11189 lipoprotein NlpI; Pro 99.7 1.7E-16 3.7E-21 112.0 15.4 127 5-137 36-166 (296)
24 PRK11447 cellulose synthase su 99.7 2E-16 4.4E-21 128.9 16.5 136 2-137 276-419 (1157)
25 TIGR03302 OM_YfiO outer membra 99.7 3.8E-16 8.2E-21 106.9 15.1 132 2-136 40-199 (235)
26 PF13429 TPR_15: Tetratricopep 99.7 1.3E-16 2.9E-21 111.8 13.1 149 3-157 118-268 (280)
27 COG3063 PilF Tfp pilus assembl 99.7 2.8E-16 6.1E-21 103.6 13.4 148 1-155 75-222 (250)
28 PRK15179 Vi polysaccharide bio 99.7 2.7E-16 5.9E-21 121.0 15.2 130 1-136 92-221 (694)
29 PRK09782 bacteriophage N4 rece 99.7 3.4E-16 7.4E-21 124.5 15.9 132 2-140 549-680 (987)
30 PRK15363 pathogenicity island 99.7 6.2E-16 1.3E-20 97.4 13.4 108 21-134 26-134 (157)
31 PF13429 TPR_15: Tetratricopep 99.7 2.8E-17 6.1E-22 115.2 7.9 125 2-132 153-277 (280)
32 TIGR02917 PEP_TPR_lipo putativ 99.7 6.2E-16 1.3E-20 122.3 16.0 129 2-137 743-871 (899)
33 PRK11447 cellulose synthase su 99.7 8.2E-16 1.8E-20 125.4 16.8 135 2-136 358-528 (1157)
34 TIGR03302 OM_YfiO outer membra 99.7 6.1E-16 1.3E-20 105.9 13.4 135 1-135 76-235 (235)
35 TIGR02917 PEP_TPR_lipo putativ 99.7 9.5E-16 2.1E-20 121.3 15.8 129 2-136 132-260 (899)
36 KOG3060 Uncharacterized conser 99.7 1.7E-15 3.8E-20 101.2 14.0 141 2-150 93-236 (289)
37 KOG0553 TPR repeat-containing 99.7 4E-16 8.7E-21 106.5 11.1 112 3-120 89-200 (304)
38 PRK11788 tetratricopeptide rep 99.7 2.3E-15 4.9E-20 110.0 15.5 130 2-137 187-316 (389)
39 PRK11788 tetratricopeptide rep 99.7 1.3E-15 2.9E-20 111.2 14.2 134 2-136 114-247 (389)
40 PLN03088 SGT1, suppressor of 99.7 1.8E-15 4E-20 109.1 13.2 109 2-116 9-117 (356)
41 PLN02789 farnesyltranstransfer 99.7 6.1E-15 1.3E-19 104.6 15.2 132 4-141 46-180 (320)
42 KOG1173 Anaphase-promoting com 99.7 1.6E-15 3.5E-20 110.9 11.8 146 2-147 387-533 (611)
43 KOG0547 Translocase of outer m 99.7 1.3E-15 2.8E-20 110.0 11.2 129 2-136 367-495 (606)
44 TIGR02552 LcrH_SycD type III s 99.7 3.7E-15 8.1E-20 93.6 11.3 99 2-106 24-122 (135)
45 KOG0547 Translocase of outer m 99.7 4.3E-15 9.3E-20 107.3 12.5 148 2-155 333-480 (606)
46 KOG2076 RNA polymerase III tra 99.6 9.9E-15 2.1E-19 111.5 14.8 128 2-135 146-273 (895)
47 COG5010 TadD Flp pilus assembl 99.6 1.9E-14 4.1E-19 96.6 14.5 152 2-159 73-224 (257)
48 PLN02789 farnesyltranstransfer 99.6 2.1E-14 4.6E-19 101.9 14.9 141 2-148 78-228 (320)
49 PRK10049 pgaA outer membrane p 99.6 5.7E-14 1.2E-18 110.5 17.4 128 3-137 23-150 (765)
50 PRK10049 pgaA outer membrane p 99.6 2.4E-14 5.1E-19 112.7 15.3 130 3-138 318-462 (765)
51 PRK15363 pathogenicity island 99.6 7.7E-15 1.7E-19 92.5 10.1 92 2-99 42-133 (157)
52 PRK10370 formate-dependent nit 99.6 1.6E-14 3.4E-19 96.3 11.6 98 1-104 79-179 (198)
53 COG4783 Putative Zn-dependent 99.6 1E-13 2.3E-18 100.1 15.8 126 2-133 313-438 (484)
54 PLN03088 SGT1, suppressor of 99.6 4E-14 8.8E-19 102.2 13.5 108 32-145 5-112 (356)
55 KOG1125 TPR repeat-containing 99.6 1.7E-14 3.7E-19 105.8 11.0 118 12-135 411-530 (579)
56 TIGR02795 tol_pal_ybgF tol-pal 99.6 1.2E-13 2.5E-18 84.7 12.8 105 29-136 2-109 (119)
57 KOG0553 TPR repeat-containing 99.6 3.4E-14 7.3E-19 97.2 11.2 104 32-141 84-187 (304)
58 COG4235 Cytochrome c biogenesi 99.6 5E-13 1.1E-17 91.8 14.9 128 10-143 137-267 (287)
59 PRK14574 hmsH outer membrane p 99.6 1.8E-13 3.8E-18 107.4 14.3 129 2-136 41-169 (822)
60 TIGR02795 tol_pal_ybgF tol-pal 99.6 1.4E-13 3.1E-18 84.3 11.1 101 2-105 9-112 (119)
61 KOG2003 TPR repeat-containing 99.6 7.6E-14 1.6E-18 100.8 11.1 140 2-147 497-636 (840)
62 PRK15179 Vi polysaccharide bio 99.6 4.4E-13 9.6E-18 103.5 15.9 120 11-136 68-187 (694)
63 PF12895 Apc3: Anaphase-promot 99.5 3.7E-14 8E-19 81.9 7.6 81 8-95 2-84 (84)
64 cd00189 TPR Tetratricopeptide 99.5 1.9E-13 4.2E-18 79.6 10.8 98 31-134 2-99 (100)
65 COG5010 TadD Flp pilus assembl 99.5 3.7E-13 8E-18 90.5 13.2 122 2-129 107-228 (257)
66 PF09976 TPR_21: Tetratricopep 99.5 5.6E-13 1.2E-17 84.7 13.3 121 6-130 22-145 (145)
67 cd00189 TPR Tetratricopeptide 99.5 1.7E-13 3.7E-18 79.8 9.5 95 1-101 6-100 (100)
68 PRK15331 chaperone protein Sic 99.5 7.2E-13 1.6E-17 84.0 12.5 112 24-142 32-143 (165)
69 KOG1129 TPR repeat-containing 99.5 1.6E-13 3.4E-18 95.3 9.7 130 5-137 334-463 (478)
70 PF13414 TPR_11: TPR repeat; P 99.5 1.8E-13 4E-18 76.0 8.3 67 28-100 2-69 (69)
71 PRK02603 photosystem I assembl 99.5 5.6E-13 1.2E-17 87.1 11.7 117 18-137 22-154 (172)
72 COG2956 Predicted N-acetylgluc 99.5 1.2E-12 2.6E-17 90.6 13.5 135 1-136 113-247 (389)
73 CHL00033 ycf3 photosystem I as 99.5 1.4E-12 3.1E-17 84.9 13.1 129 6-137 10-154 (168)
74 PF13525 YfiO: Outer membrane 99.5 5.1E-12 1.1E-16 84.7 15.9 137 2-141 12-179 (203)
75 KOG0548 Molecular co-chaperone 99.5 5.1E-13 1.1E-17 97.5 11.4 105 4-114 367-471 (539)
76 PRK10803 tol-pal system protei 99.5 1.3E-12 2.9E-17 90.3 13.0 107 27-136 140-250 (263)
77 KOG2002 TPR-containing nuclear 99.5 2.8E-13 6E-18 104.5 9.9 126 7-138 624-751 (1018)
78 KOG0548 Molecular co-chaperone 99.5 1.2E-12 2.7E-17 95.5 12.6 138 2-145 305-468 (539)
79 PF12895 Apc3: Anaphase-promot 99.5 2E-13 4.3E-18 78.8 6.6 84 41-129 1-84 (84)
80 PRK10866 outer membrane biogen 99.5 1.5E-11 3.2E-16 84.4 16.9 141 2-145 39-217 (243)
81 PRK10803 tol-pal system protei 99.5 3.3E-12 7.2E-17 88.4 13.5 97 6-105 154-253 (263)
82 KOG1173 Anaphase-promoting com 99.5 1.9E-12 4.1E-17 95.1 12.8 132 6-143 289-420 (611)
83 COG2956 Predicted N-acetylgluc 99.5 2E-12 4.4E-17 89.5 12.1 129 2-136 148-282 (389)
84 PF13414 TPR_11: TPR repeat; P 99.5 3.1E-13 6.6E-18 75.1 6.7 67 68-134 2-69 (69)
85 KOG0550 Molecular chaperone (D 99.5 9.3E-13 2E-17 93.7 10.2 141 2-145 210-362 (486)
86 CHL00033 ycf3 photosystem I as 99.5 2.7E-12 5.9E-17 83.6 11.6 108 2-118 42-166 (168)
87 cd05804 StaR_like StaR_like; a 99.5 5.2E-12 1.1E-16 91.3 14.2 125 3-134 51-179 (355)
88 PF09295 ChAPs: ChAPs (Chs5p-A 99.4 4.5E-12 9.9E-17 91.9 13.4 120 4-132 178-297 (395)
89 KOG3060 Uncharacterized conser 99.4 1.3E-11 2.7E-16 83.0 14.2 132 5-142 62-193 (289)
90 KOG1129 TPR repeat-containing 99.4 3.2E-12 7E-17 88.9 11.5 129 1-136 229-357 (478)
91 PRK02603 photosystem I assembl 99.4 4.9E-12 1.1E-16 82.7 11.9 95 2-102 42-153 (172)
92 PRK14574 hmsH outer membrane p 99.4 7.1E-12 1.5E-16 98.6 14.8 129 2-137 75-203 (822)
93 PF13432 TPR_16: Tetratricopep 99.4 4E-13 8.6E-18 73.7 5.5 60 2-61 4-63 (65)
94 PF13432 TPR_16: Tetratricopep 99.4 1.2E-12 2.6E-17 71.8 7.4 63 34-102 2-64 (65)
95 KOG0624 dsRNA-activated protei 99.4 5.1E-12 1.1E-16 88.4 12.1 94 2-101 45-138 (504)
96 KOG2002 TPR-containing nuclear 99.4 4E-12 8.7E-17 98.3 12.4 130 2-136 277-413 (1018)
97 KOG1174 Anaphase-promoting com 99.4 5.9E-12 1.3E-16 89.9 11.9 130 1-136 238-367 (564)
98 KOG0550 Molecular chaperone (D 99.4 1.4E-12 3.1E-17 92.7 8.8 143 2-146 176-328 (486)
99 KOG4162 Predicted calmodulin-b 99.4 8.8E-12 1.9E-16 94.5 13.3 129 2-136 657-787 (799)
100 PRK10153 DNA-binding transcrip 99.4 1.2E-11 2.7E-16 93.0 14.2 121 9-136 356-486 (517)
101 PRK10747 putative protoheme IX 99.4 2E-11 4.4E-16 89.7 15.0 135 2-136 160-361 (398)
102 KOG0624 dsRNA-activated protei 99.4 1.6E-11 3.5E-16 86.0 13.5 137 2-138 79-258 (504)
103 TIGR00540 hemY_coli hemY prote 99.4 2.6E-11 5.6E-16 89.5 15.4 128 2-135 91-219 (409)
104 TIGR00540 hemY_coli hemY prote 99.4 9.8E-12 2.1E-16 91.7 12.7 119 12-136 242-370 (409)
105 PRK11906 transcriptional regul 99.4 1.8E-11 4E-16 88.9 13.3 121 10-136 273-405 (458)
106 PF12569 NARP1: NMDA receptor- 99.4 4.9E-11 1.1E-15 89.5 16.0 66 71-136 196-261 (517)
107 KOG1840 Kinesin light chain [C 99.4 6.9E-12 1.5E-16 93.3 11.4 133 1-133 247-397 (508)
108 PRK15331 chaperone protein Sic 99.4 9.2E-12 2E-16 79.0 10.1 95 2-103 44-138 (165)
109 cd05804 StaR_like StaR_like; a 99.4 2.2E-11 4.9E-16 88.0 13.6 120 9-134 94-217 (355)
110 KOG2003 TPR repeat-containing 99.4 1.6E-11 3.4E-16 89.0 12.4 132 2-139 565-696 (840)
111 PF14559 TPR_19: Tetratricopep 99.4 2.7E-12 5.9E-17 71.0 6.7 67 5-77 1-67 (68)
112 KOG0543 FKBP-type peptidyl-pro 99.4 2.3E-11 5.1E-16 86.6 12.4 127 2-134 215-357 (397)
113 COG1729 Uncharacterized protei 99.4 3.6E-11 7.7E-16 81.9 12.4 103 31-136 143-248 (262)
114 PRK14720 transcript cleavage f 99.4 1.7E-11 3.6E-16 96.3 12.0 129 2-133 38-179 (906)
115 KOG0495 HAT repeat protein [RN 99.4 4.8E-11 1E-15 89.6 13.7 122 8-136 631-752 (913)
116 KOG0543 FKBP-type peptidyl-pro 99.3 2.2E-11 4.8E-16 86.7 11.0 112 32-143 211-331 (397)
117 PRK10747 putative protoheme IX 99.3 4.7E-11 1E-15 87.8 13.0 122 2-133 270-391 (398)
118 COG4783 Putative Zn-dependent 99.3 1.4E-10 2.9E-15 84.3 14.7 119 26-150 303-421 (484)
119 COG1729 Uncharacterized protei 99.3 6.1E-11 1.3E-15 80.8 12.2 105 2-109 148-255 (262)
120 PF12688 TPR_5: Tetratrico pep 99.3 9.2E-11 2E-15 71.7 11.8 101 30-133 2-105 (120)
121 PF13371 TPR_9: Tetratricopept 99.3 1.5E-11 3.3E-16 68.9 7.6 61 1-61 1-61 (73)
122 PF09976 TPR_21: Tetratricopep 99.3 1.6E-11 3.5E-16 78.0 8.5 89 1-96 54-145 (145)
123 PF04733 Coatomer_E: Coatomer 99.3 4.9E-11 1.1E-15 83.8 11.5 128 3-136 139-269 (290)
124 KOG1156 N-terminal acetyltrans 99.3 2.2E-11 4.8E-16 90.9 10.0 137 5-149 17-153 (700)
125 KOG0495 HAT repeat protein [RN 99.3 8.5E-11 1.8E-15 88.3 12.9 126 5-136 661-786 (913)
126 PF13512 TPR_18: Tetratricopep 99.3 3.2E-10 7E-15 70.5 13.4 106 28-136 9-132 (142)
127 KOG1128 Uncharacterized conser 99.3 6.2E-11 1.3E-15 89.6 10.7 125 4-134 494-618 (777)
128 KOG2076 RNA polymerase III tra 99.3 2.4E-10 5.1E-15 88.1 13.6 104 29-138 139-242 (895)
129 COG4235 Cytochrome c biogenesi 99.3 1.5E-10 3.3E-15 79.7 11.2 98 1-104 162-262 (287)
130 PF04733 Coatomer_E: Coatomer 99.3 4.3E-11 9.3E-16 84.1 8.5 124 2-136 109-234 (290)
131 KOG1840 Kinesin light chain [C 99.2 8.5E-11 1.8E-15 87.6 10.2 133 1-133 205-355 (508)
132 PF14559 TPR_19: Tetratricopep 99.2 3.3E-11 7.3E-16 66.6 5.4 64 40-109 2-65 (68)
133 PF13371 TPR_9: Tetratricopept 99.2 1.3E-10 2.7E-15 65.2 7.9 60 77-136 3-62 (73)
134 PF13512 TPR_18: Tetratricopep 99.2 8.2E-10 1.8E-14 68.7 11.7 100 2-104 17-134 (142)
135 KOG4234 TPR repeat-containing 99.2 4.2E-10 9E-15 73.5 10.2 101 35-136 101-201 (271)
136 PF13525 YfiO: Outer membrane 99.2 8E-10 1.7E-14 74.1 12.1 106 28-136 4-123 (203)
137 KOG1174 Anaphase-promoting com 99.2 3.2E-10 7E-15 81.2 10.5 134 2-136 341-504 (564)
138 PRK10866 outer membrane biogen 99.2 2.5E-09 5.4E-14 73.5 14.5 129 1-129 75-238 (243)
139 PF14938 SNAP: Soluble NSF att 99.2 9.4E-10 2E-14 77.4 12.2 130 7-136 86-229 (282)
140 PF12688 TPR_5: Tetratrico pep 99.2 1.9E-09 4.2E-14 65.9 11.5 94 2-98 8-104 (120)
141 KOG1127 TPR repeat-containing 99.1 1.4E-10 3.1E-15 90.3 7.4 123 10-136 507-629 (1238)
142 PF13424 TPR_12: Tetratricopep 99.1 2.2E-10 4.8E-15 65.0 6.4 73 26-98 2-75 (78)
143 COG4700 Uncharacterized protei 99.1 5.3E-09 1.1E-13 67.7 12.6 125 1-130 95-220 (251)
144 KOG4162 Predicted calmodulin-b 99.1 8.9E-10 1.9E-14 83.9 10.4 97 2-104 691-789 (799)
145 KOG1156 N-terminal acetyltrans 99.1 1.6E-09 3.5E-14 81.2 11.2 126 2-133 48-173 (700)
146 KOG1128 Uncharacterized conser 99.1 1.4E-09 3E-14 82.6 10.9 132 3-141 432-591 (777)
147 KOG4234 TPR repeat-containing 99.1 2.3E-09 5.1E-14 70.1 10.3 106 2-113 102-212 (271)
148 PRK11906 transcriptional regul 99.1 4.6E-09 1E-13 76.7 12.8 118 9-132 318-436 (458)
149 PRK14720 transcript cleavage f 99.1 3E-09 6.6E-14 83.9 12.6 119 13-138 100-258 (906)
150 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 1.4E-09 3.1E-14 79.1 10.1 91 1-97 206-296 (395)
151 KOG3785 Uncharacterized conser 99.1 2.2E-09 4.7E-14 75.9 10.5 136 1-136 63-218 (557)
152 PF14938 SNAP: Soluble NSF att 99.1 1.8E-09 3.8E-14 76.0 10.1 132 2-134 42-186 (282)
153 KOG2376 Signal recognition par 99.1 3.7E-09 8E-14 78.6 11.6 125 5-139 22-146 (652)
154 PF12569 NARP1: NMDA receptor- 99.1 9.4E-09 2E-13 77.4 13.6 127 1-133 200-335 (517)
155 KOG4648 Uncharacterized conser 99.1 1.3E-09 2.8E-14 76.7 8.3 98 2-105 104-201 (536)
156 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.9E-09 6.2E-14 77.7 9.3 69 24-98 70-141 (453)
157 KOG2796 Uncharacterized conser 99.0 1.9E-08 4.1E-13 68.5 10.6 139 2-140 184-323 (366)
158 KOG4555 TPR repeat-containing 99.0 3E-08 6.5E-13 60.7 10.4 95 4-100 52-146 (175)
159 KOG1127 TPR repeat-containing 98.9 8.4E-09 1.8E-13 80.8 9.6 108 2-115 569-676 (1238)
160 KOG4642 Chaperone-dependent E3 98.9 7.5E-09 1.6E-13 69.3 7.9 91 2-98 17-107 (284)
161 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 8.4E-09 1.8E-13 75.3 8.7 66 68-133 74-142 (453)
162 COG4105 ComL DNA uptake lipopr 98.9 3.7E-07 8E-12 62.1 15.9 134 3-139 42-203 (254)
163 KOG1070 rRNA processing protei 98.9 7.8E-08 1.7E-12 77.8 14.0 150 2-155 1537-1686(1710)
164 KOG2376 Signal recognition par 98.9 1.5E-07 3.3E-12 70.3 14.5 139 2-143 86-264 (652)
165 KOG4648 Uncharacterized conser 98.9 8.7E-09 1.9E-13 72.7 6.8 100 32-137 100-199 (536)
166 COG3071 HemY Uncharacterized e 98.9 3.7E-07 8.1E-12 65.3 14.8 135 2-136 160-361 (400)
167 KOG1130 Predicted G-alpha GTPa 98.8 1.2E-08 2.7E-13 73.5 7.1 133 1-133 201-345 (639)
168 COG4700 Uncharacterized protei 98.8 4.7E-07 1E-11 58.9 13.1 130 8-145 69-201 (251)
169 PF13424 TPR_12: Tetratricopep 98.8 9.9E-09 2.1E-13 58.1 4.7 66 68-133 4-76 (78)
170 PF06552 TOM20_plant: Plant sp 98.8 9E-08 2E-12 61.7 9.3 89 11-105 7-116 (186)
171 PLN03218 maturation of RBCL 1; 98.8 3.8E-07 8.2E-12 74.3 15.1 60 71-130 686-746 (1060)
172 KOG4642 Chaperone-dependent E3 98.8 1.8E-08 3.9E-13 67.6 6.0 95 32-132 13-107 (284)
173 PLN03081 pentatricopeptide (PP 98.8 1.4E-07 3E-12 74.3 11.9 128 4-132 400-557 (697)
174 KOG3081 Vesicle coat complex C 98.8 6.4E-07 1.4E-11 61.2 13.3 122 2-136 115-240 (299)
175 PLN03218 maturation of RBCL 1; 98.8 6.5E-07 1.4E-11 73.0 15.6 121 5-132 517-643 (1060)
176 PLN03081 pentatricopeptide (PP 98.8 3.8E-07 8.2E-12 71.9 13.7 118 2-127 367-486 (697)
177 COG4785 NlpI Lipoprotein NlpI, 98.7 9.1E-08 2E-12 63.6 8.1 102 29-136 65-166 (297)
178 PF10300 DUF3808: Protein of u 98.7 4E-07 8.6E-12 68.4 12.5 125 8-134 246-378 (468)
179 PRK10153 DNA-binding transcrip 98.7 2.1E-07 4.6E-12 70.5 11.0 87 11-104 400-488 (517)
180 KOG3785 Uncharacterized conser 98.7 1.7E-07 3.8E-12 66.5 9.4 134 5-145 32-193 (557)
181 KOG4340 Uncharacterized conser 98.7 5.9E-07 1.3E-11 62.6 11.5 125 6-136 21-177 (459)
182 PLN03077 Protein ECB2; Provisi 98.7 6.2E-07 1.3E-11 72.2 13.3 122 4-130 563-718 (857)
183 PLN03077 Protein ECB2; Provisi 98.7 9.1E-07 2E-11 71.3 14.0 121 3-135 532-656 (857)
184 COG0457 NrfG FOG: TPR repeat [ 98.7 2.1E-06 4.5E-11 57.2 13.8 128 4-135 104-234 (291)
185 KOG1586 Protein required for f 98.7 1.4E-06 3E-11 58.6 12.3 135 6-140 84-232 (288)
186 PF13428 TPR_14: Tetratricopep 98.7 6.3E-08 1.4E-12 48.6 4.7 40 71-110 3-42 (44)
187 PRK04841 transcriptional regul 98.6 1.3E-06 2.8E-11 70.7 13.7 130 3-132 460-602 (903)
188 PF05843 Suf: Suppressor of fo 98.6 1.6E-06 3.5E-11 61.0 12.5 125 6-136 12-140 (280)
189 COG0457 NrfG FOG: TPR repeat [ 98.6 4.9E-06 1.1E-10 55.4 14.5 127 4-135 139-268 (291)
190 PF13431 TPR_17: Tetratricopep 98.6 3.7E-08 7.9E-13 46.5 2.8 32 18-49 2-33 (34)
191 KOG0376 Serine-threonine phosp 98.6 5.1E-08 1.1E-12 71.2 4.8 101 4-110 13-113 (476)
192 KOG1915 Cell cycle control pro 98.6 2.4E-06 5.3E-11 62.9 13.2 123 7-136 378-504 (677)
193 KOG4555 TPR repeat-containing 98.6 2.8E-06 6.1E-11 52.2 11.3 99 32-136 46-148 (175)
194 PF13428 TPR_14: Tetratricopep 98.6 1.2E-07 2.5E-12 47.6 4.5 42 30-77 2-43 (44)
195 KOG0376 Serine-threonine phosp 98.6 7.1E-08 1.5E-12 70.5 5.1 105 34-144 9-113 (476)
196 COG4105 ComL DNA uptake lipopr 98.6 2.4E-06 5.2E-11 58.3 11.8 106 28-136 33-149 (254)
197 COG3071 HemY Uncharacterized e 98.6 5.7E-06 1.2E-10 59.4 13.7 123 6-133 95-217 (400)
198 COG4785 NlpI Lipoprotein NlpI, 98.6 1.2E-06 2.6E-11 58.4 9.5 97 2-104 72-168 (297)
199 KOG1130 Predicted G-alpha GTPa 98.6 8.3E-08 1.8E-12 69.3 4.3 132 1-132 101-264 (639)
200 KOG4340 Uncharacterized conser 98.5 1.2E-06 2.7E-11 61.0 9.5 132 1-132 50-207 (459)
201 KOG2053 Mitochondrial inherita 98.5 3E-06 6.5E-11 66.3 12.5 124 6-136 20-143 (932)
202 PF06552 TOM20_plant: Plant sp 98.5 1.4E-06 3E-11 56.3 8.8 87 45-137 7-114 (186)
203 KOG0545 Aryl-hydrocarbon recep 98.5 1.9E-06 4.2E-11 58.4 9.4 108 29-136 178-297 (329)
204 COG3118 Thioredoxin domain-con 98.5 6.6E-06 1.4E-10 57.2 12.2 146 3-157 142-289 (304)
205 KOG3081 Vesicle coat complex C 98.5 7.6E-06 1.7E-10 56.0 11.8 128 3-136 145-275 (299)
206 PF03704 BTAD: Bacterial trans 98.5 2.2E-05 4.9E-10 49.8 13.2 97 36-132 13-125 (146)
207 PF13431 TPR_17: Tetratricopep 98.5 1.6E-07 3.4E-12 44.3 2.4 32 92-123 2-33 (34)
208 PF05843 Suf: Suppressor of fo 98.4 3.7E-06 8.1E-11 59.2 10.1 102 30-137 2-104 (280)
209 PF07719 TPR_2: Tetratricopept 98.4 9.5E-07 2.1E-11 41.5 4.8 30 72-101 4-33 (34)
210 PF00515 TPR_1: Tetratricopept 98.4 8.3E-07 1.8E-11 41.7 4.6 32 30-61 2-33 (34)
211 PF03704 BTAD: Bacterial trans 98.4 1.6E-05 3.4E-10 50.5 11.4 86 6-97 17-124 (146)
212 PRK04841 transcriptional regul 98.4 9.6E-06 2.1E-10 65.7 12.6 133 2-134 498-643 (903)
213 KOG1586 Protein required for f 98.4 1.9E-05 4.1E-10 53.3 11.6 104 32-136 77-187 (288)
214 PF00515 TPR_1: Tetratricopept 98.4 9.9E-07 2.1E-11 41.5 4.2 32 70-101 2-33 (34)
215 PF07719 TPR_2: Tetratricopept 98.3 1.8E-06 3.9E-11 40.5 4.6 33 29-61 1-33 (34)
216 PF04184 ST7: ST7 protein; In 98.3 2E-05 4.3E-10 58.5 11.4 124 7-132 180-324 (539)
217 KOG2610 Uncharacterized conser 98.3 1.8E-05 4E-10 56.1 10.6 122 4-128 112-234 (491)
218 KOG1915 Cell cycle control pro 98.3 3.2E-05 6.9E-10 57.3 11.7 123 6-135 84-206 (677)
219 KOG1308 Hsp70-interacting prot 98.3 9E-07 2E-11 62.4 3.7 90 5-100 124-213 (377)
220 COG2976 Uncharacterized protei 98.3 1.4E-05 3.1E-10 52.3 8.9 120 13-136 70-192 (207)
221 KOG1941 Acetylcholine receptor 98.2 5.5E-06 1.2E-10 59.2 6.9 131 3-133 91-236 (518)
222 KOG0551 Hsp90 co-chaperone CNS 98.2 1.8E-05 3.9E-10 55.9 9.3 105 30-136 82-186 (390)
223 COG2976 Uncharacterized protei 98.2 0.0001 2.3E-09 48.4 11.9 96 1-103 95-193 (207)
224 KOG0545 Aryl-hydrocarbon recep 98.2 7.5E-05 1.6E-09 50.9 11.3 97 2-104 185-299 (329)
225 KOG1070 rRNA processing protei 98.2 0.0001 2.2E-09 60.7 13.5 99 32-136 1533-1633(1710)
226 KOG0551 Hsp90 co-chaperone CNS 98.2 1.1E-05 2.4E-10 56.9 7.2 94 2-101 88-185 (390)
227 KOG1941 Acetylcholine receptor 98.1 1.9E-05 4.2E-10 56.6 8.1 133 1-133 128-276 (518)
228 KOG2053 Mitochondrial inherita 98.1 2.3E-05 5E-10 61.5 9.1 92 39-136 19-110 (932)
229 KOG1308 Hsp70-interacting prot 98.1 1.9E-06 4.2E-11 60.8 2.0 95 36-136 121-215 (377)
230 PF13181 TPR_8: Tetratricopept 98.0 1.3E-05 2.8E-10 37.5 4.0 29 32-60 4-32 (34)
231 PF13281 DUF4071: Domain of un 98.0 0.00032 7E-09 51.0 12.6 131 8-145 195-347 (374)
232 PF14561 TPR_20: Tetratricopep 98.0 0.00017 3.7E-09 41.9 9.1 77 14-94 7-83 (90)
233 PF13181 TPR_8: Tetratricopept 98.0 1.9E-05 4.1E-10 36.9 4.2 33 70-102 2-34 (34)
234 PF13174 TPR_6: Tetratricopept 98.0 1.9E-05 4.2E-10 36.5 4.0 29 73-101 4-32 (33)
235 PF10300 DUF3808: Protein of u 97.9 0.00011 2.3E-09 55.6 9.1 93 2-99 274-377 (468)
236 KOG1585 Protein required for f 97.9 0.00047 1E-08 47.1 10.7 126 3-129 39-176 (308)
237 PF13174 TPR_6: Tetratricopept 97.9 2.9E-05 6.2E-10 35.9 3.6 32 30-61 1-32 (33)
238 KOG2610 Uncharacterized conser 97.9 0.00043 9.4E-09 49.4 10.7 123 3-131 145-275 (491)
239 KOG2047 mRNA splicing factor [ 97.9 0.00078 1.7E-08 51.9 12.6 135 2-136 394-544 (835)
240 PF09613 HrpB1_HrpK: Bacterial 97.8 0.00031 6.6E-09 44.9 8.8 88 6-100 21-108 (160)
241 PRK15180 Vi polysaccharide bio 97.8 0.00021 4.7E-09 53.3 8.9 130 7-144 301-430 (831)
242 KOG2471 TPR repeat-containing 97.8 3.8E-05 8.3E-10 57.0 5.1 114 2-115 247-381 (696)
243 PF13176 TPR_7: Tetratricopept 97.8 5E-05 1.1E-09 36.1 3.9 21 74-94 4-24 (36)
244 PF13176 TPR_7: Tetratricopept 97.8 4.4E-05 9.4E-10 36.3 3.4 30 31-60 1-30 (36)
245 PF10602 RPN7: 26S proteasome 97.8 0.00037 8E-09 45.8 8.7 103 29-134 36-144 (177)
246 COG3898 Uncharacterized membra 97.8 0.0031 6.8E-08 46.1 13.8 128 7-136 166-296 (531)
247 KOG4507 Uncharacterized conser 97.8 0.00026 5.6E-09 53.9 8.6 91 8-104 620-711 (886)
248 KOG1585 Protein required for f 97.8 0.0023 4.9E-08 43.9 12.2 128 6-133 82-220 (308)
249 PF04184 ST7: ST7 protein; In 97.8 0.0015 3.3E-08 48.9 12.3 102 31-136 261-379 (539)
250 KOG2471 TPR repeat-containing 97.8 0.00021 4.5E-09 53.3 7.8 144 4-149 215-379 (696)
251 KOG2796 Uncharacterized conser 97.7 0.00088 1.9E-08 46.4 10.0 131 1-137 218-359 (366)
252 PF04781 DUF627: Protein of un 97.7 0.00065 1.4E-08 40.6 8.1 40 1-40 2-44 (111)
253 PF08631 SPO22: Meiosis protei 97.7 0.0068 1.5E-07 42.8 14.7 130 5-134 3-152 (278)
254 PF09986 DUF2225: Uncharacteri 97.7 0.0012 2.6E-08 44.7 10.2 92 7-98 89-194 (214)
255 PF02259 FAT: FAT domain; Int 97.7 0.0029 6.3E-08 45.8 13.1 135 2-136 153-342 (352)
256 PF13281 DUF4071: Domain of un 97.6 0.0023 5E-08 46.7 11.8 126 28-155 140-278 (374)
257 PF09613 HrpB1_HrpK: Bacterial 97.6 0.0022 4.8E-08 41.1 10.4 83 31-119 12-94 (160)
258 KOG4507 Uncharacterized conser 97.6 0.00057 1.2E-08 52.1 8.6 106 35-145 613-718 (886)
259 PRK10941 hypothetical protein; 97.6 0.00091 2E-08 46.8 9.2 76 32-113 184-259 (269)
260 PF08424 NRDE-2: NRDE-2, neces 97.6 0.0064 1.4E-07 43.9 13.7 111 16-132 6-131 (321)
261 TIGR02561 HrpB1_HrpK type III 97.5 0.00095 2.1E-08 42.1 7.4 74 7-86 22-95 (153)
262 PRK10941 hypothetical protein; 97.5 0.0028 6.1E-08 44.4 10.0 69 69-137 181-249 (269)
263 KOG1550 Extracellular protein 97.5 0.0048 1E-07 47.8 12.1 117 7-133 261-394 (552)
264 KOG3824 Huntingtin interacting 97.5 0.0003 6.6E-09 49.6 5.0 57 5-61 126-182 (472)
265 COG0790 FOG: TPR repeat, SEL1 97.4 0.013 2.7E-07 41.6 12.9 117 8-134 90-222 (292)
266 KOG2396 HAT (Half-A-TPR) repea 97.4 0.0034 7.5E-08 47.0 10.0 88 14-107 90-178 (568)
267 COG4976 Predicted methyltransf 97.4 0.00042 9.2E-09 46.8 4.9 61 2-62 2-62 (287)
268 smart00028 TPR Tetratricopepti 97.4 0.00054 1.2E-08 30.6 4.1 27 73-99 5-31 (34)
269 smart00028 TPR Tetratricopepti 97.3 0.00036 7.7E-09 31.3 3.2 32 30-61 2-33 (34)
270 PF14561 TPR_20: Tetratricopep 97.3 0.0077 1.7E-07 35.0 9.2 66 48-119 7-74 (90)
271 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0015 3.2E-08 33.9 5.4 28 75-102 7-34 (53)
272 PF10602 RPN7: 26S proteasome 97.3 0.0085 1.8E-07 39.4 10.3 94 2-95 43-139 (177)
273 KOG3617 WD40 and TPR repeat-co 97.3 0.0052 1.1E-07 49.1 10.5 126 4-131 835-995 (1416)
274 PF04781 DUF627: Protein of un 97.3 0.0064 1.4E-07 36.4 8.7 95 35-132 2-107 (111)
275 KOG2047 mRNA splicing factor [ 97.3 0.0063 1.4E-07 47.1 10.7 129 4-136 486-619 (835)
276 KOG3824 Huntingtin interacting 97.3 0.0011 2.4E-08 46.9 6.4 71 35-111 122-192 (472)
277 KOG0530 Protein farnesyltransf 97.3 0.021 4.6E-07 39.6 12.1 123 5-133 53-177 (318)
278 PF12862 Apc5: Anaphase-promot 97.3 0.0027 5.9E-08 37.1 7.0 58 6-63 9-75 (94)
279 KOG2396 HAT (Half-A-TPR) repea 97.2 0.0071 1.5E-07 45.4 10.2 84 49-138 91-175 (568)
280 PF09986 DUF2225: Uncharacteri 97.2 0.0036 7.7E-08 42.5 8.0 96 41-136 89-198 (214)
281 PF12862 Apc5: Anaphase-promot 97.2 0.0044 9.4E-08 36.3 7.5 62 38-99 7-71 (94)
282 PF08424 NRDE-2: NRDE-2, neces 97.2 0.033 7E-07 40.3 13.2 117 11-133 47-184 (321)
283 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0032 7E-08 32.6 5.9 32 30-61 2-33 (53)
284 PF07079 DUF1347: Protein of u 97.2 0.024 5.2E-07 42.3 12.3 128 3-136 387-525 (549)
285 PF12968 DUF3856: Domain of Un 97.2 0.012 2.6E-07 35.8 8.9 93 5-97 19-128 (144)
286 TIGR02561 HrpB1_HrpK type III 97.2 0.013 2.8E-07 37.1 9.5 82 32-119 13-94 (153)
287 KOG3364 Membrane protein invol 97.2 0.023 4.9E-07 35.4 10.3 71 30-105 33-107 (149)
288 KOG4814 Uncharacterized conser 97.2 0.0089 1.9E-07 46.3 10.2 102 34-135 359-460 (872)
289 COG4976 Predicted methyltransf 97.1 0.00098 2.1E-08 45.1 4.6 60 38-103 4-63 (287)
290 COG3898 Uncharacterized membra 97.1 0.036 7.7E-07 40.8 12.6 119 9-136 243-362 (531)
291 PRK13184 pknD serine/threonine 97.1 0.014 3E-07 47.8 11.3 127 4-137 484-625 (932)
292 PF07079 DUF1347: Protein of u 97.1 0.039 8.4E-07 41.3 12.5 125 2-132 13-157 (549)
293 PF02259 FAT: FAT domain; Int 97.1 0.028 6.1E-07 40.7 12.2 115 27-145 144-298 (352)
294 COG0790 FOG: TPR repeat, SEL1 97.1 0.057 1.2E-06 38.3 13.6 118 8-136 126-270 (292)
295 KOG1310 WD40 repeat protein [G 97.1 0.0055 1.2E-07 46.5 8.1 91 8-104 387-480 (758)
296 PF12968 DUF3856: Domain of Un 97.0 0.019 4.1E-07 35.0 8.7 102 31-132 9-129 (144)
297 KOG3364 Membrane protein invol 97.0 0.018 3.9E-07 35.9 8.8 73 69-141 32-109 (149)
298 PF04910 Tcf25: Transcriptiona 97.0 0.043 9.2E-07 40.3 12.3 132 1-136 46-226 (360)
299 KOG4814 Uncharacterized conser 97.0 0.0083 1.8E-07 46.5 8.6 91 2-98 361-457 (872)
300 KOG1914 mRNA cleavage and poly 97.0 0.028 6.1E-07 42.8 11.1 81 19-107 10-90 (656)
301 COG3118 Thioredoxin domain-con 96.9 0.013 2.9E-07 41.2 8.7 120 1-128 174-297 (304)
302 KOG1258 mRNA processing protei 96.9 0.067 1.4E-06 41.2 12.7 114 6-124 308-421 (577)
303 PF13374 TPR_10: Tetratricopep 96.9 0.0039 8.4E-08 30.1 4.4 31 30-60 3-33 (42)
304 PF15015 NYD-SP12_N: Spermatog 96.8 0.0098 2.1E-07 43.9 7.5 95 36-130 183-289 (569)
305 PF10345 Cohesin_load: Cohesin 96.8 0.1 2.2E-06 41.2 13.7 129 2-131 66-207 (608)
306 KOG2300 Uncharacterized conser 96.7 0.077 1.7E-06 40.1 11.7 126 2-127 14-151 (629)
307 PF04910 Tcf25: Transcriptiona 96.6 0.17 3.7E-06 37.3 13.9 112 20-131 31-167 (360)
308 KOG2300 Uncharacterized conser 96.6 0.05 1.1E-06 41.1 10.2 127 4-133 332-475 (629)
309 KOG3617 WD40 and TPR repeat-co 96.6 0.013 2.8E-07 46.9 7.5 28 68-95 966-993 (1416)
310 KOG0530 Protein farnesyltransf 96.6 0.072 1.6E-06 37.1 10.2 113 39-157 53-167 (318)
311 PF11817 Foie-gras_1: Foie gra 96.6 0.031 6.7E-07 38.8 8.7 87 44-130 153-245 (247)
312 PF10345 Cohesin_load: Cohesin 96.6 0.26 5.6E-06 39.0 15.3 121 12-133 38-169 (608)
313 COG3914 Spy Predicted O-linked 96.5 0.12 2.6E-06 39.9 11.8 118 13-136 49-175 (620)
314 PF11207 DUF2989: Protein of u 96.5 0.062 1.3E-06 35.9 8.9 73 45-123 122-198 (203)
315 PF13374 TPR_10: Tetratricopep 96.4 0.012 2.6E-07 28.3 4.3 29 70-98 3-31 (42)
316 COG5191 Uncharacterized conser 96.4 0.0076 1.7E-07 42.8 4.5 83 19-107 97-180 (435)
317 COG2912 Uncharacterized conser 96.4 0.024 5.3E-07 39.5 6.9 71 35-111 187-257 (269)
318 COG4649 Uncharacterized protei 96.3 0.16 3.6E-06 33.3 12.4 125 5-131 68-195 (221)
319 COG4649 Uncharacterized protei 96.2 0.18 3.8E-06 33.1 10.3 106 2-115 101-212 (221)
320 COG3629 DnrI DNA-binding trans 96.2 0.043 9.4E-07 38.7 7.6 79 11-97 137-215 (280)
321 KOG1550 Extracellular protein 96.2 0.37 7.9E-06 37.7 13.3 106 10-127 308-421 (552)
322 COG3629 DnrI DNA-binding trans 96.2 0.051 1.1E-06 38.3 7.8 64 69-132 153-216 (280)
323 COG2912 Uncharacterized conser 96.2 0.11 2.5E-06 36.3 9.4 65 72-136 184-248 (269)
324 COG5191 Uncharacterized conser 96.1 0.025 5.5E-07 40.3 6.0 71 68-138 106-177 (435)
325 PF07720 TPR_3: Tetratricopept 96.1 0.033 7.2E-07 26.3 4.6 32 30-61 2-35 (36)
326 PF07721 TPR_4: Tetratricopept 96.0 0.0095 2.1E-07 25.8 2.5 21 32-52 4-24 (26)
327 PF10516 SHNi-TPR: SHNi-TPR; 96.0 0.017 3.7E-07 27.7 3.4 30 30-59 2-31 (38)
328 PRK13184 pknD serine/threonine 96.0 0.12 2.6E-06 42.6 10.0 99 35-137 481-586 (932)
329 KOG0529 Protein geranylgeranyl 95.9 0.46 9.9E-06 35.3 12.1 127 9-137 89-229 (421)
330 KOG1310 WD40 repeat protein [G 95.8 0.035 7.6E-07 42.4 6.1 91 40-136 385-478 (758)
331 PF07721 TPR_4: Tetratricopept 95.8 0.021 4.5E-07 24.7 3.0 23 71-93 3-25 (26)
332 COG5159 RPN6 26S proteasome re 95.7 0.4 8.7E-06 34.1 10.5 132 2-133 10-195 (421)
333 smart00386 HAT HAT (Half-A-TPR 95.6 0.035 7.7E-07 24.9 3.8 30 9-38 1-30 (33)
334 PF10579 Rapsyn_N: Rapsyn N-te 95.6 0.085 1.8E-06 29.6 5.7 58 35-95 12-69 (80)
335 KOG2581 26S proteasome regulat 95.6 0.29 6.3E-06 36.3 9.8 130 7-136 138-280 (493)
336 KOG0529 Protein geranylgeranyl 95.6 0.64 1.4E-05 34.5 13.3 129 8-142 41-188 (421)
337 PF10373 EST1_DNA_bind: Est1 D 95.6 0.087 1.9E-06 36.9 7.2 62 14-81 1-62 (278)
338 KOG1914 mRNA cleavage and poly 95.4 0.48 1E-05 36.6 10.5 91 5-100 411-503 (656)
339 PF10579 Rapsyn_N: Rapsyn N-te 95.4 0.2 4.3E-06 28.2 6.5 62 71-132 8-72 (80)
340 COG4455 ImpE Protein of avirul 95.2 0.19 4.2E-06 34.2 7.3 58 39-102 11-68 (273)
341 PF10516 SHNi-TPR: SHNi-TPR; 95.1 0.083 1.8E-06 25.3 4.0 28 71-98 3-30 (38)
342 COG3914 Spy Predicted O-linked 95.1 0.58 1.3E-05 36.3 10.3 108 5-112 77-185 (620)
343 PF04053 Coatomer_WDAD: Coatom 95.1 1.1 2.4E-05 34.1 12.9 89 5-95 271-373 (443)
344 PF11817 Foie-gras_1: Foie gra 95.0 0.48 1E-05 32.9 9.3 85 12-96 155-245 (247)
345 COG3947 Response regulator con 95.0 0.11 2.3E-06 36.9 5.9 58 32-95 282-339 (361)
346 PF15015 NYD-SP12_N: Spermatog 95.0 0.19 4.1E-06 37.5 7.3 83 4-92 185-285 (569)
347 PF04053 Coatomer_WDAD: Coatom 94.9 0.12 2.6E-06 39.1 6.4 86 25-129 343-428 (443)
348 PF07720 TPR_3: Tetratricopept 94.9 0.17 3.8E-06 23.8 4.7 30 71-100 3-34 (36)
349 TIGR03504 FimV_Cterm FimV C-te 94.5 0.11 2.4E-06 25.7 3.8 25 33-57 3-27 (44)
350 COG5107 RNA14 Pre-mRNA 3'-end 94.5 1.6 3.5E-05 33.2 11.3 85 17-108 30-114 (660)
351 KOG0546 HSP90 co-chaperone CPR 94.5 0.049 1.1E-06 39.4 3.3 110 35-144 228-350 (372)
352 PF04190 DUF410: Protein of un 94.5 1.1 2.5E-05 31.4 13.4 83 50-132 71-170 (260)
353 PF11207 DUF2989: Protein of u 94.5 0.95 2.1E-05 30.4 9.2 52 84-136 121-173 (203)
354 COG2909 MalT ATP-dependent tra 94.4 2.4 5.2E-05 34.8 13.3 107 28-134 414-528 (894)
355 KOG2041 WD40 repeat protein [G 94.4 0.74 1.6E-05 36.9 9.5 26 69-94 796-821 (1189)
356 PF07163 Pex26: Pex26 protein; 94.3 1.3 2.9E-05 31.4 10.9 119 3-127 43-182 (309)
357 KOG1839 Uncharacterized protei 94.3 0.38 8.2E-06 40.6 8.2 128 6-133 943-1087(1236)
358 KOG1258 mRNA processing protei 94.3 2 4.4E-05 33.5 12.9 119 12-136 62-184 (577)
359 PF10255 Paf67: RNA polymerase 94.1 0.15 3.2E-06 38.0 5.2 58 74-131 127-192 (404)
360 TIGR03504 FimV_Cterm FimV C-te 94.1 0.17 3.8E-06 25.0 3.9 25 73-97 3-27 (44)
361 PF00244 14-3-3: 14-3-3 protei 94.1 0.64 1.4E-05 32.2 8.0 27 1-27 7-33 (236)
362 KOG0985 Vesicle coat protein c 94.0 1.4 3E-05 37.0 10.6 115 2-129 1111-1246(1666)
363 PF04190 DUF410: Protein of un 94.0 0.96 2.1E-05 31.8 8.9 106 7-127 2-114 (260)
364 PF09205 DUF1955: Domain of un 93.9 0.55 1.2E-05 29.5 6.6 56 37-98 94-149 (161)
365 smart00386 HAT HAT (Half-A-TPR 93.9 0.19 4.1E-06 22.3 3.7 26 84-109 2-27 (33)
366 KOG1464 COP9 signalosome, subu 93.8 0.74 1.6E-05 32.6 7.9 101 1-101 151-263 (440)
367 PF09670 Cas_Cas02710: CRISPR- 93.6 1.7 3.7E-05 32.4 10.1 56 3-58 139-198 (379)
368 KOG1839 Uncharacterized protei 93.6 0.4 8.6E-06 40.5 7.2 132 1-132 979-1128(1236)
369 PRK15180 Vi polysaccharide bio 93.6 0.15 3.2E-06 38.8 4.4 95 2-102 330-424 (831)
370 KOG1497 COP9 signalosome, subu 93.4 1.3 2.8E-05 32.0 8.5 96 1-97 109-212 (399)
371 COG3947 Response regulator con 93.3 0.59 1.3E-05 33.3 6.8 59 71-129 281-339 (361)
372 KOG1464 COP9 signalosome, subu 93.3 2.1 4.5E-05 30.5 9.6 123 9-132 41-174 (440)
373 PF10373 EST1_DNA_bind: Est1 D 93.2 0.58 1.3E-05 32.8 6.8 62 48-115 1-62 (278)
374 KOG0890 Protein kinase of the 93.1 4.9 0.00011 36.7 12.9 112 2-115 1677-1801(2382)
375 COG2909 MalT ATP-dependent tra 93.0 3.5 7.5E-05 33.9 11.2 93 2-94 465-564 (894)
376 KOG3616 Selective LIM binding 93.0 0.75 1.6E-05 37.2 7.5 113 2-129 772-908 (1636)
377 KOG0985 Vesicle coat protein c 92.7 4.3 9.3E-05 34.4 11.4 85 2-97 1055-1161(1666)
378 PF14863 Alkyl_sulf_dimr: Alky 92.7 1.1 2.5E-05 28.3 6.9 50 69-118 70-119 (141)
379 PF08631 SPO22: Meiosis protei 92.6 2.7 5.8E-05 29.8 13.5 125 2-132 42-186 (278)
380 KOG0686 COP9 signalosome, subu 92.1 0.9 2E-05 33.9 6.6 96 2-97 157-257 (466)
381 KOG3616 Selective LIM binding 92.1 2.3 5E-05 34.6 9.1 23 72-94 768-790 (1636)
382 KOG3807 Predicted membrane pro 92.1 3.7 7.9E-05 30.2 11.3 93 6-100 195-306 (556)
383 PF12854 PPR_1: PPR repeat 92.0 0.53 1.1E-05 21.7 3.7 27 28-54 6-32 (34)
384 PF11846 DUF3366: Domain of un 92.0 1.1 2.3E-05 29.9 6.5 48 48-102 130-177 (193)
385 PF10255 Paf67: RNA polymerase 92.0 0.97 2.1E-05 33.8 6.8 65 32-97 125-192 (404)
386 KOG0890 Protein kinase of the 92.0 3.9 8.4E-05 37.3 11.0 103 26-136 1667-1788(2382)
387 PRK11619 lytic murein transgly 92.0 5.5 0.00012 32.0 12.1 80 45-131 295-374 (644)
388 KOG2422 Uncharacterized conser 91.9 4.6 9.9E-05 31.7 10.2 89 5-100 352-450 (665)
389 KOG2581 26S proteasome regulat 91.8 1.7 3.7E-05 32.5 7.7 58 4-61 218-279 (493)
390 PF09797 NatB_MDM20: N-acetylt 91.7 2.2 4.9E-05 31.5 8.5 44 11-54 199-242 (365)
391 KOG0276 Vesicle coat complex C 91.5 5.3 0.00012 31.7 10.3 104 14-132 626-750 (794)
392 KOG1463 26S proteasome regulat 91.5 4.3 9.3E-05 29.8 12.1 130 4-133 13-198 (411)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 91.1 2.4 5.2E-05 26.2 7.6 79 8-96 39-126 (126)
394 COG1747 Uncharacterized N-term 91.1 5.7 0.00012 30.9 9.9 84 38-130 75-158 (711)
395 PF13041 PPR_2: PPR repeat fam 90.8 0.9 2E-05 22.7 4.2 31 29-59 3-33 (50)
396 COG4455 ImpE Protein of avirul 90.6 1 2.3E-05 30.8 5.3 58 4-61 10-67 (273)
397 PF01535 PPR: PPR repeat; Int 90.6 0.53 1.2E-05 20.5 3.0 25 33-57 4-28 (31)
398 TIGR03362 VI_chp_7 type VI sec 90.5 5.1 0.00011 28.9 13.5 126 7-133 111-280 (301)
399 COG5107 RNA14 Pre-mRNA 3'-end 90.4 6.7 0.00015 30.1 10.1 51 41-97 444-494 (660)
400 COG1747 Uncharacterized N-term 90.2 7.5 0.00016 30.3 12.5 56 2-59 106-161 (711)
401 COG5536 BET4 Protein prenyltra 89.9 5.5 0.00012 28.4 9.4 136 12-147 91-237 (328)
402 cd02682 MIT_AAA_Arch MIT: doma 89.8 1.3 2.8E-05 24.8 4.4 10 95-104 39-48 (75)
403 PF11846 DUF3366: Domain of un 89.7 2.6 5.6E-05 28.0 6.7 51 85-136 127-177 (193)
404 PF14863 Alkyl_sulf_dimr: Alky 89.6 2.9 6.4E-05 26.5 6.5 53 27-85 68-120 (141)
405 KOG3783 Uncharacterized conser 89.6 8.4 0.00018 30.0 10.6 128 12-144 250-390 (546)
406 cd00280 TRFH Telomeric Repeat 89.5 1.4 3E-05 29.2 5.0 25 36-61 118-142 (200)
407 KOG2041 WD40 repeat protein [G 89.3 6.8 0.00015 31.8 9.4 66 29-94 796-877 (1189)
408 KOG4151 Myosin assembly protei 89.3 1.4 3.1E-05 35.4 5.9 100 35-136 59-160 (748)
409 smart00299 CLH Clathrin heavy 89.1 3.9 8.4E-05 25.5 12.2 48 5-53 17-64 (140)
410 KOG1538 Uncharacterized conser 89.0 2.8 6E-05 33.6 7.1 53 76-131 780-845 (1081)
411 KOG0546 HSP90 co-chaperone CPR 88.9 0.53 1.1E-05 34.3 3.1 70 31-106 277-346 (372)
412 TIGR00756 PPR pentatricopeptid 88.8 1.3 2.8E-05 19.7 3.6 27 32-58 3-29 (35)
413 PF10952 DUF2753: Protein of u 88.1 2.9 6.3E-05 25.9 5.4 57 73-129 5-76 (140)
414 COG5091 SGT1 Suppressor of G2 86.9 2 4.4E-05 30.3 4.8 99 4-103 4-113 (368)
415 KOG0686 COP9 signalosome, subu 86.9 11 0.00024 28.5 8.7 99 30-132 151-258 (466)
416 PF12739 TRAPPC-Trs85: ER-Golg 85.8 13 0.00029 28.1 12.2 135 1-135 214-402 (414)
417 PF12921 ATP13: Mitochondrial 85.6 6.5 0.00014 24.4 8.0 73 30-102 3-85 (126)
418 KOG1497 COP9 signalosome, subu 85.6 12 0.00026 27.4 9.2 99 31-130 105-211 (399)
419 PF07219 HemY_N: HemY protein 85.3 5.8 0.00013 23.7 5.8 50 69-118 59-108 (108)
420 PF13041 PPR_2: PPR repeat fam 85.2 3.3 7.1E-05 20.6 4.5 30 69-98 3-32 (50)
421 KOG2114 Vacuolar assembly/sort 85.1 11 0.00024 31.1 8.5 54 5-59 344-398 (933)
422 cd02680 MIT_calpain7_2 MIT: do 84.8 2.2 4.7E-05 23.8 3.5 21 40-60 17-37 (75)
423 cd02682 MIT_AAA_Arch MIT: doma 84.7 4.1 9E-05 22.7 4.6 26 73-98 10-35 (75)
424 KOG2758 Translation initiation 84.3 14 0.0003 27.1 8.5 81 15-97 115-195 (432)
425 smart00777 Mad3_BUB1_I Mad3/BU 84.3 7.6 0.00017 24.1 6.3 19 74-92 104-122 (125)
426 KOG2908 26S proteasome regulat 84.3 14 0.00031 27.2 11.0 97 37-133 83-187 (380)
427 KOG2422 Uncharacterized conser 83.6 20 0.00044 28.4 13.7 128 2-136 291-452 (665)
428 PF02184 HAT: HAT (Half-A-TPR) 83.2 3.3 7.1E-05 19.0 3.2 26 10-36 2-27 (32)
429 PF13812 PPR_3: Pentatricopept 83.0 3 6.6E-05 18.4 4.1 26 32-57 4-29 (34)
430 PF09205 DUF1955: Domain of un 82.7 9.9 0.00021 24.1 7.9 120 3-133 10-150 (161)
431 PRK11619 lytic murein transgly 82.6 24 0.00052 28.5 12.7 121 6-129 323-465 (644)
432 PF04090 RNA_pol_I_TF: RNA pol 82.4 13 0.00027 25.2 10.7 57 5-61 51-108 (199)
433 KOG2561 Adaptor protein NUB1, 82.4 20 0.00044 27.5 8.6 97 2-98 170-296 (568)
434 PRK15490 Vi polysaccharide bio 82.3 22 0.00048 28.3 9.1 57 69-127 42-98 (578)
435 KOG0276 Vesicle coat complex C 82.2 18 0.00039 29.0 8.4 31 27-57 664-694 (794)
436 PF02064 MAS20: MAS20 protein 82.1 6.1 0.00013 24.3 5.0 27 35-61 69-95 (121)
437 KOG0687 26S proteasome regulat 81.7 18 0.0004 26.6 10.4 107 29-135 104-213 (393)
438 KOG3783 Uncharacterized conser 80.8 13 0.00028 29.0 7.3 59 75-133 455-521 (546)
439 KOG2114 Vacuolar assembly/sort 80.7 23 0.0005 29.4 8.8 23 2-24 375-397 (933)
440 cd02683 MIT_1 MIT: domain cont 80.4 8.1 0.00018 21.6 5.2 14 82-95 19-32 (77)
441 PF04097 Nic96: Nup93/Nic96; 80.3 21 0.00046 28.6 8.6 27 109-136 511-537 (613)
442 KOG4521 Nuclear pore complex, 80.2 22 0.00048 30.7 8.7 113 1-119 926-1070(1480)
443 KOG4151 Myosin assembly protei 80.1 9.6 0.00021 31.0 6.6 98 2-105 60-163 (748)
444 KOG3807 Predicted membrane pro 80.0 22 0.00047 26.4 9.7 96 33-136 188-308 (556)
445 KOG1538 Uncharacterized conser 80.0 3.5 7.5E-05 33.0 4.1 19 116-134 888-906 (1081)
446 KOG4014 Uncharacterized conser 79.9 16 0.00034 24.6 8.0 97 28-133 33-142 (248)
447 KOG2561 Adaptor protein NUB1, 79.1 13 0.00028 28.4 6.6 101 32-132 166-296 (568)
448 PF10952 DUF2753: Protein of u 79.0 13 0.00028 23.1 7.1 73 32-104 4-89 (140)
449 PF04212 MIT: MIT (microtubule 79.0 6 0.00013 21.4 3.9 22 36-57 12-33 (69)
450 PF04212 MIT: MIT (microtubule 78.7 6.7 0.00015 21.2 4.1 23 75-97 11-33 (69)
451 PF02064 MAS20: MAS20 protein 78.3 6.4 0.00014 24.3 4.2 31 74-104 68-98 (121)
452 PF08238 Sel1: Sel1 repeat; I 78.2 5.4 0.00012 18.3 3.8 14 45-58 24-37 (39)
453 PF12583 TPPII_N: Tripeptidyl 77.5 5.1 0.00011 25.0 3.6 38 38-81 85-122 (139)
454 COG5187 RPN7 26S proteasome re 77.2 25 0.00055 25.5 10.6 105 29-133 115-222 (412)
455 cd02681 MIT_calpain7_1 MIT: do 77.1 6.6 0.00014 22.0 3.7 23 36-58 13-35 (76)
456 PF12739 TRAPPC-Trs85: ER-Golg 77.1 30 0.00064 26.3 10.3 106 27-132 205-329 (414)
457 PF07219 HemY_N: HemY protein 77.0 13 0.00029 22.2 6.6 47 32-84 62-108 (108)
458 cd02681 MIT_calpain7_1 MIT: do 76.9 7.4 0.00016 21.8 3.9 25 74-98 11-35 (76)
459 PF03745 DUF309: Domain of unk 76.9 9.3 0.0002 20.4 6.5 57 35-91 5-61 (62)
460 cd02683 MIT_1 MIT: domain cont 76.7 6.2 0.00013 22.1 3.6 21 37-57 14-34 (77)
461 cd00280 TRFH Telomeric Repeat 75.4 22 0.00047 23.9 8.2 39 76-115 118-156 (200)
462 smart00671 SEL1 Sel1-like repe 75.4 6.3 0.00014 17.6 4.1 14 84-97 20-33 (36)
463 PF04348 LppC: LppC putative l 75.2 0.92 2E-05 35.4 0.0 51 3-53 32-85 (536)
464 PF15297 CKAP2_C: Cytoskeleton 74.8 14 0.00031 27.2 5.8 48 13-60 121-171 (353)
465 KOG4279 Serine/threonine prote 74.7 7.9 0.00017 31.7 4.8 130 7-143 255-406 (1226)
466 PF04348 LppC: LppC putative l 73.9 1 2.3E-05 35.1 0.0 118 11-133 4-128 (536)
467 PF15297 CKAP2_C: Cytoskeleton 73.9 15 0.00032 27.1 5.7 61 39-102 112-173 (353)
468 PHA02537 M terminase endonucle 73.2 28 0.00061 24.2 9.9 21 6-26 94-114 (230)
469 COG4941 Predicted RNA polymera 72.5 37 0.0008 25.2 7.6 121 9-136 270-398 (415)
470 COG4941 Predicted RNA polymera 71.9 38 0.00083 25.1 11.9 97 10-111 311-407 (415)
471 PF04840 Vps16_C: Vps16, C-ter 71.9 35 0.00076 25.0 7.3 98 5-125 187-284 (319)
472 PF10037 MRP-S27: Mitochondria 71.9 43 0.00093 25.7 9.0 58 33-97 107-166 (429)
473 PF09670 Cas_Cas02710: CRISPR- 71.6 39 0.00084 25.4 7.7 59 74-132 136-198 (379)
474 KOG2063 Vacuolar assembly/sort 71.1 61 0.0013 27.4 9.0 101 2-102 511-624 (877)
475 PF13226 DUF4034: Domain of un 70.7 36 0.00078 24.4 9.4 110 3-118 8-148 (277)
476 cd02679 MIT_spastin MIT: domai 70.4 13 0.00028 21.0 3.8 15 43-57 22-36 (79)
477 TIGR00985 3a0801s04tom mitocho 69.6 19 0.00041 23.1 4.9 28 34-61 95-123 (148)
478 KOG4014 Uncharacterized conser 68.8 33 0.00072 23.2 11.4 49 9-59 87-142 (248)
479 TIGR02710 CRISPR-associated pr 68.4 49 0.0011 24.9 11.5 53 2-54 137-196 (380)
480 PF04840 Vps16_C: Vps16, C-ter 67.8 45 0.00098 24.4 10.3 77 38-128 186-262 (319)
481 smart00745 MIT Microtubule Int 67.3 15 0.00032 20.3 3.8 19 39-57 18-36 (77)
482 PF14689 SPOB_a: Sensor_kinase 67.3 16 0.00035 19.4 3.7 24 34-57 28-51 (62)
483 PHA02537 M terminase endonucle 67.1 8 0.00017 26.7 3.1 99 38-136 92-211 (230)
484 KOG1920 IkappaB kinase complex 66.5 18 0.00038 31.2 5.3 14 8-21 893-906 (1265)
485 COG5600 Transcription-associat 66.2 36 0.00078 25.6 6.2 67 35-101 183-252 (413)
486 KOG1463 26S proteasome regulat 66.0 53 0.0011 24.5 9.8 100 36-135 216-319 (411)
487 COG3014 Uncharacterized protei 65.8 54 0.0012 24.5 7.2 83 14-96 40-152 (449)
488 PF09797 NatB_MDM20: N-acetylt 65.6 53 0.0011 24.3 13.0 48 82-129 196-243 (365)
489 KOG0128 RNA-binding protein SA 65.0 83 0.0018 26.4 12.9 120 10-136 94-223 (881)
490 PF00637 Clathrin: Region in C 64.8 4.3 9.3E-05 25.3 1.4 50 4-53 16-66 (143)
491 PF12753 Nro1: Nuclear pore co 64.7 20 0.00044 27.0 4.9 15 69-83 350-364 (404)
492 PF13226 DUF4034: Domain of un 64.7 49 0.0011 23.7 6.6 49 13-61 61-131 (277)
493 PRK15490 Vi polysaccharide bio 64.6 72 0.0016 25.6 8.1 78 8-93 21-98 (578)
494 KOG4563 Cell cycle-regulated h 64.6 13 0.00029 27.6 3.9 50 72-121 44-101 (400)
495 PF12753 Nro1: Nuclear pore co 64.2 17 0.00038 27.3 4.5 47 84-132 333-391 (404)
496 smart00101 14_3_3 14-3-3 homol 64.2 47 0.001 23.3 12.7 24 1-24 7-30 (244)
497 cd02678 MIT_VPS4 MIT: domain c 63.3 20 0.00043 19.8 3.8 19 39-57 16-34 (75)
498 PF14852 Fis1_TPR_N: Fis1 N-te 62.7 8.1 0.00017 18.0 1.8 27 106-132 4-33 (35)
499 KOG4279 Serine/threonine prote 62.2 20 0.00044 29.6 4.7 132 28-160 200-344 (1226)
500 PF11349 DUF3151: Protein of u 62.2 35 0.00076 21.1 7.2 82 20-101 27-124 (129)
No 1
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.3e-21 Score=142.97 Aligned_cols=145 Identities=16% Similarity=0.217 Sum_probs=93.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHHHHcCCcH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG----------------------------------NPLSFEALFENALLMDRCGEGE 46 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~----------------------------------~p~~~~~~~~la~~~~~~~~~~ 46 (164)
+|+.|++.++|++|..+|+.+-+. +|+.|+.|..+|+||..+++++
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 356667777777777777666333 3445667777777777777777
Q ss_pred HHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHH
Q 031170 47 AVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEF 126 (164)
Q Consensus 47 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l 126 (164)
.|+++|++|++++|. ...++..+|.-+....+++.|+.+|+.++..+|.+..+|+.+|.+|.++++++.|..+|
T Consensus 439 ~Aik~f~RAiQldp~------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 439 TAIKCFKRAIQLDPR------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred HHHHHHHHhhccCCc------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 777777777777776 55566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhCCCcchhhhHhhhhhhhhh
Q 031170 127 AKYRQLSPKKFEVEGYLRTPLSRMK 151 (164)
Q Consensus 127 ~~~~~~~p~~~~~~~~~~~~~~~~~ 151 (164)
++|+.++|.+.....++...+...+
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhh
Confidence 6666666666555555544444433
No 2
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=6.5e-20 Score=140.86 Aligned_cols=131 Identities=17% Similarity=0.207 Sum_probs=107.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+ ...++..+|.+++.
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE------DPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 456677888888888888888888888888888888888888888888888888888887 67778888888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
.|++++|+.+|++++..+|++..+++.+|.++..+|++++|+..+.+++...|.+..
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 888888888888888888888888888888888888888888888888888887743
No 3
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.84 E-value=2.9e-19 Score=118.89 Aligned_cols=126 Identities=10% Similarity=0.085 Sum_probs=118.1
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH-HHccC-
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK-FLQKN- 84 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-~~~~~- 84 (164)
..++.++++..+++++..+|+++++|..+|.++...|++++|+..|++++++.|+ +..++..+|.++ ...|+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYAALATVLYYQAGQH 124 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCC
Confidence 3567799999999999999999999999999999999999999999999999999 789999999974 77787
Q ss_pred -HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 85 -VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 85 -~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
+++|...++++++.+|++..+++.+|..+...|++++|+.+++++++..|.+..
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 599999999999999999999999999999999999999999999999988743
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.84 E-value=2.1e-19 Score=113.98 Aligned_cols=116 Identities=12% Similarity=0.189 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170 14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ 93 (164)
Q Consensus 14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 93 (164)
-...|++++..+|++ +..+|.++...|++++|+..|++++..+|. +..++..+|.++...|++++|+.+|+
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 457899999999975 667899999999999999999999999999 79999999999999999999999999
Q ss_pred HHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 94 ELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 94 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
+++..+|+++.+++.+|.++...|++++|+..|.+++...|++..
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999999999999999999843
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-19 Score=133.31 Aligned_cols=130 Identities=17% Similarity=0.102 Sum_probs=108.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||-+|.+.|..+-|++.|++++...|+.++++.++|..+...|+..+|..+|.+++.+.|. .+.+...+|.+|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~ 365 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYR 365 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888888888888888888888888888 7777888888888
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|.+++|...|.+++..+|....++.++|.+|.++|+.++|+.+|+.++++.|..
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH
Confidence 88888888888888888888888888888888888888888888888888888776
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=7.4e-19 Score=135.10 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=124.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+ ...++..+|.++.
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~ 444 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHH
Confidence 3667889999999999999999999999999999999999999999999999999999998 6788889999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|++++|+..|++++..+|+++..+..+|.++...|++++|+..|.+++.+.|..
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999875
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1e-19 Score=134.37 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=85.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.+|..+++++.|++.|+++++++|++.-+|..+|.=+..++++|.|..+|++|+..+|. +..+|+-+|.+|.+
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------hYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------HYNAWYGLGTVYLK 501 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------hhHHHHhhhhheec
Confidence 556666667777777777777777766666666666666666666666666666666666 56666666666666
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++++.|.-+|++|+.++|.+.......|..+.+.|+.++|+.++++|+.++|.+
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 6666666666666666666666666666666666666666666666666666666
No 8
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.81 E-value=2.6e-18 Score=113.15 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=122.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++|+++.|+ +..++...|.-++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------~GdVLNNYG~FLC 114 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------ccchhhhhhHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999 7889999999999
Q ss_pred HccCHHHHHHHHHHHHHh--CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 81 LQKNVDEALKSYQELEIE--DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
.+|.+++|...|++++.. .|.....+.++|.|..++|+.+.|.++|++++..+|+...
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 999999999999999975 2345677899999999999999999999999999999833
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=5.4e-19 Score=130.54 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=68.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+-..|+..+|.++|.+++...|+.++++.++|+++.++|..++|..+|.+++...|. ...++..+|.+|-.
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAHNNLASIYKQ 400 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhhhhHHHHHHh
Confidence 334444555555555555555555555555555555555555555555555555555555 44555555555555
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+|++++|+.+|+.++.+.|...+++.++|.+|..+|+.+.|+..+.+++.++|..
T Consensus 401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 5555555555555555555555555555555555555555555555555555443
No 10
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.80 E-value=6.7e-18 Score=106.08 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=112.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 16 NVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 16 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
+.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|. ...++..+|.++...|++++|+.+++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred HHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 96 EIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 96 ~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
+..+|.++..++.+|.++...|++++|+..++++++..|++..
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999999999844
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=1e-17 Score=113.42 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=83.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..+++++..+|++..++..+|.++..+|++++|+..++++++..|. ...++..+|.++..
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH
Confidence 456677777778888777777777777777777777777777777777777777777766 34455555555555
Q ss_pred ccCHHHHHHHHHHHHHhC--CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIED--PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+..+++++... |.....+..+|.++...|++++|...+.+++...|.+
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 556666555555555432 2233444555555555555555555555555555554
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=2.4e-18 Score=109.15 Aligned_cols=109 Identities=13% Similarity=-0.036 Sum_probs=103.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|. ...+++.+|.++..
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~------~~~a~~~lg~~l~~ 104 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS------HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999998 79999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL 116 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 116 (164)
.|++++|+..|++++...|+++..+..++.+....
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999998888876553
No 13
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.1e-18 Score=121.41 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=87.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||..|+++++...|++.|+++++++|.|-.+|+++|+.|.-++-+.=|+-+|++|+..-|+ +++.|..+|+||.
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWVALGECYE 443 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHH
Confidence 3555666666667777777777777777677777777776666666677777777776666 5677777777777
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
+.++.++|++||..++........++..+|.+|.++++..+|..++.+.+.
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777777777777776666666777777777777777777777777666
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=1.6e-17 Score=126.20 Aligned_cols=122 Identities=15% Similarity=0.010 Sum_probs=100.8
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA 88 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 88 (164)
+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+ +..++..+|.++...|++++|
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHH
Confidence 45788888888888888888888888888888888888888888888888888 677888888888888888888
Q ss_pred HHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC-CCc
Q 031170 89 LKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS-PKK 136 (164)
Q Consensus 89 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~-p~~ 136 (164)
+.++++++..+|.++...+.++.++...|++++|+..+++++... |.+
T Consensus 392 i~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 392 LQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN 440 (553)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC
Confidence 888888888888877766666666777888888888888887765 444
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=2e-17 Score=125.69 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=118.6
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|. .......++.+++
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~~~~ 417 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999998 5555566677788
Q ss_pred HccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 81 LQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
..|++++|+.++++++... |+++..+..+|.++...|+.++|+..+.++....|...
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~ 475 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL 475 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH
Confidence 8999999999999999875 77888899999999999999999999999988888763
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=1.9e-17 Score=131.46 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=119.2
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
..|++++|+..|++++..+|+ +.++..+|.++.+.|++++|+..|++++..+|+ +..++..+|.++...|+++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIA 660 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHH
Confidence 449999999999999999996 899999999999999999999999999999999 7889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 87 EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
+|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|+...
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 9999999999999999999999999999999999999999999999998843
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=5.8e-17 Score=109.68 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=120.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|++.+++++...|.++.++..+|.++...|++++|+..++++++..+... ....+..+|.++.
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ 146 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHH
Confidence 367888999999999999999999999999999999999999999999999999998643211 3567778999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|..++.+++..+|.+...+..++.++...|++++|+..+++++...|.+
T Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999987765
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=3.6e-17 Score=126.28 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=102.5
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHH----HHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEA----VIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
.++...|++++|+..|++++..+|+++.++..+|.++...|++++ |+..++++++.+|+ ...++..+|.+
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~ 293 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADA 293 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHH
Confidence 456677888888888888888888888888888888888888875 78888888888887 67777778888
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|.+++...|.+
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8888888888888888888888888777888888888888888888888888777776
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.75 E-value=7.7e-17 Score=113.77 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=63.5
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+ ...++..+|.++...
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHC
Confidence 34445555555555555555555555555555555555555555555555555555555 445555555555555
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
|++++|+..+++++..+|+++...+. ..+....++.++|+..+.+..
T Consensus 146 g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 146 GRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHH
Confidence 55555555555555555555421111 111223445555555554443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=7.2e-17 Score=124.64 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=123.1
Q ss_pred CchhhhhcCCchH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 1 MARLLSEMGKTQD----ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 1 la~~~~~~~~~~~----A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
+|.++...|++++ |+..|++++..+|+++.++..+|.++..+|++++|+..+++++..+|+ ...++..+|
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La 325 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYA 325 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHH
Confidence 4677889999996 899999999999999999999999999999999999999999999998 788889999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.++...|++++|+..|++++..+|.+...+...|.++...|++++|+..|.++++..|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999999999887777789999999999999999999999999873
No 21
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.3e-17 Score=115.58 Aligned_cols=129 Identities=22% Similarity=0.150 Sum_probs=123.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.-|.-.++.++|+.+|+++++++|+...+|..+|.=|.++.+...|++.|++|++++|. +.++|+.+|+.|..
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWYGLGQAYEI 410 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHhhhhHHHHH
Confidence 566778899999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++..-=|+-+|++++..-|+|...|..+|.+|...++.++|+.+|++++.....+
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999887664
No 22
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=3.1e-17 Score=119.88 Aligned_cols=149 Identities=21% Similarity=0.210 Sum_probs=119.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh---------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK--------------- 66 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------- 66 (164)
|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+..+.++-..|+..++++++++|++...-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 34566677777777777777777777777777777777777776677777777777776643210
Q ss_pred --------------------------------------------------------hhhhHHHHHHHHHHHccCHHHHHH
Q 031170 67 --------------------------------------------------------EARDVRFIMAQIKFLQKNVDEALK 90 (164)
Q Consensus 67 --------------------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~ 90 (164)
..+.++..||.+|...|+|++|+.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 046777789999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhc
Q 031170 91 SYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKL 152 (164)
Q Consensus 91 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 152 (164)
||+.+|...|++...|..+|-++....+..+|+..|++|+.+.|.. ++.++.+.++++-+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y--VR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY--VRVRYNLGISCMNL 511 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe--eeeehhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999 67777776655544
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=1.7e-16 Score=112.00 Aligned_cols=127 Identities=18% Similarity=0.204 Sum_probs=117.2
Q ss_pred hhhcCCchHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 5 LSEMGKTQDARNVFEEILAGNP----LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
....+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+ .+.++..+|.++.
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~ 109 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLT 109 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHH
Confidence 3345678899999999997544 33677999999999999999999999999999998 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|++.
T Consensus 110 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 110 QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999999999999999983
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=2e-16 Score=128.86 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=121.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------hhhHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------ARDVRF 73 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------~~~~~~ 73 (164)
|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++++.+|+...... ......
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 566788999999999999999999999999999999999999999999999999999987432100 011223
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..|+++++..|.+.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 5688999999999999999999999999999999999999999999999999999999999983
No 25
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=3.8e-16 Score=106.89 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=115.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+.... ..+++.+|.+
T Consensus 40 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~a~~~~g~~ 116 (235)
T TIGR03302 40 AKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA---DYAYYLRGLS 116 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch---HHHHHHHHHH
Confidence 5678899999999999999999999886 578999999999999999999999999999973321 2367889999
Q ss_pred HHHc--------cCHHHHHHHHHHHHHhCCCCchhh-----------------hhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 79 KFLQ--------KNVDEALKSYQELEIEDPNDFRPY-----------------FCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 79 ~~~~--------~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
++.. |++++|++.+++++..+|++...+ +.+|.++...|++.+|+..+.+++...
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence 9876 899999999999999999986542 356788888999999999999999998
Q ss_pred CCc
Q 031170 134 PKK 136 (164)
Q Consensus 134 p~~ 136 (164)
|+.
T Consensus 197 p~~ 199 (235)
T TIGR03302 197 PDT 199 (235)
T ss_pred CCC
Confidence 875
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=1.3e-16 Score=111.83 Aligned_cols=149 Identities=21% Similarity=0.200 Sum_probs=117.5
Q ss_pred hhhhhcCCchHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGN--PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
.++...++++++...++++.... |.++..|..+|.++.+.|++++|+..++++++.+|+ +..+...++.++.
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li 191 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLI 191 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHH
Confidence 46778899999999999977655 678899999999999999999999999999999998 7888889999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccch
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND 157 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
..|+++++...+.......|.++..+..+|.++...|++++|+.++.++++..|+|+.....+..++.....+....
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999988888888999999999999999999999999999999999999666666666665555554433
No 27
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=2.8e-16 Score=103.64 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=127.6
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.+|...|+.+.|.+.|+++++++|++.+++.+.|..+..+|++++|...|++|+.. |.-+. ....+..+|.|..
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~---~s~t~eN~G~Cal 150 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGE---PSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCC---cchhhhhhHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999985 33222 4678889999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT 155 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 155 (164)
+.|+++.|..+|++++..+|+.+.+...++..++..|++..|..++++.....+.. ...+.+.+...+.++.
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~---A~sL~L~iriak~~gd 222 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ---AESLLLGIRIAKRLGD 222 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc---HHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998777643 2333344444444443
No 28
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.73 E-value=2.7e-16 Score=120.98 Aligned_cols=130 Identities=15% Similarity=0.013 Sum_probs=125.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||++..+.|.+++|..+++.++...|++..++..++.++.+.+++++|+..+++++...|+ +..++..+|.++.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~ 165 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|+.+|++++..+|++..++..+|.++...|+.++|...|.+++.....-
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999887654
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=3.4e-16 Score=124.47 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=116.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+.+|+++++.+|.....+..++......|++++|+..++++++.+|+ ..++..+|.++..
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~ 621 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHH
Confidence 456677888888888888888888888777777777777779999999999999999886 5678899999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE 140 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~ 140 (164)
.|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|.+++...|++....
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999984433
No 30
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.72 E-value=6.2e-16 Score=97.37 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=102.3
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 21 ILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 21 ~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
+..+. ++..+..+.+|..+.+.|++++|...|+-++..+|. +...|+.+|-++..+|+|++|+.+|..++..+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34456 778889999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
|+++.++++.|.+++..|+.+.|+..|+.++....
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999873
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=2.8e-17 Score=115.23 Aligned_cols=125 Identities=19% Similarity=0.151 Sum_probs=97.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|+++++.+|+++.++..++.++...|+++++...+....+..|+ ++..+..+|.++..
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHHHHHHHhcc
Confidence 678899999999999999999999999999999999999999999999999998888777 67888899999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
.|++++|+.+|+++++.+|+++..+..+|.++...|+.++|..+..+++..
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999988653
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.71 E-value=6.2e-16 Score=122.31 Aligned_cols=129 Identities=19% Similarity=0.074 Sum_probs=102.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
+.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|+ ...++..+|.++..
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHh
Confidence 455667777777777777777777888888888888888888888888888888887776 56677777888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.|+ .+|+..+++++...|+++..+..+|.++...|++++|+.++++++...|.+.
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 888 7788888888888888888888888888888888888888888888888763
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.71 E-value=8.2e-16 Score=125.36 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=119.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh-------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA------------- 68 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------------- 68 (164)
|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|........
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999984321100
Q ss_pred -----------------------hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH
Q 031170 69 -----------------------RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE 125 (164)
Q Consensus 69 -----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 125 (164)
...+..+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 011224567778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 031170 126 FAKYRQLSPKK 136 (164)
Q Consensus 126 l~~~~~~~p~~ 136 (164)
+++++...|.+
T Consensus 518 l~~al~~~P~~ 528 (1157)
T PRK11447 518 MRRLAQQKPND 528 (1157)
T ss_pred HHHHHHcCCCC
Confidence 99999999988
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.71 E-value=6.1e-16 Score=105.85 Aligned_cols=135 Identities=11% Similarity=0.078 Sum_probs=114.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCcHHHHHHHHHHHhhccccchhhh--
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFE---ALFENALLMDRC--------GEGEAVIKRLEEALEIAEDGNKLKE-- 67 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~-- 67 (164)
+|.++...|++++|+..|++++..+|+++. +++.+|.++... |++++|+..++++++.+|+......
T Consensus 76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 367889999999999999999999998876 689999999876 7899999999999999998532210
Q ss_pred ---------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 68 ---------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 68 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.......+|.+++..|++.+|+..+++++...|++ ..+++.+|.++...|++++|+.+++......|+
T Consensus 156 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 156 KRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 00122467899999999999999999999998775 478999999999999999999999888776663
No 35
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.70 E-value=9.5e-16 Score=121.27 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=114.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|. ...++..+|.++..
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 205 (899)
T TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG------NVDALLLKGDLLLS 205 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHh
Confidence 567788899999999999999999999999999999999999999999999999998887 67788888999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.+|++++..+|.+...++.++.++...|++++|...+..++...|.+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 260 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999899888888888888888888888888888888888876
No 36
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1.7e-15 Score=101.19 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=125.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+..+|++++|+++|+..+..+|.+.-++....-+...+|+.-+|++.+...++.++. +.++|..++.+|+.
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLS 166 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHh
Confidence 345678899999999999999999999999988888889999999999999999999998 89999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC---CHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD---RNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRM 150 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 150 (164)
.|+|++|.-|+++++-..|-++..+..+|.+++-+| +..-|..+|.++++++|.+ .+++++..++..
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~--~ral~GI~lc~~ 236 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN--LRALFGIYLCGS 236 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh--HHHHHHHHHHHH
Confidence 999999999999999999999998888998877755 4567999999999999977 667777654443
No 37
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4e-16 Score=106.50 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=99.9
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
.-++..++|++|+..|.++|.++|.++-.|.+.+.+|.++|+++.|++-++.++.++|. ...+|..+|..|..+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------YSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH------HHHHHHHHHHHHHcc
Confidence 44678899999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 120 (164)
|++.+|+..|++++.++|++...+-.+.++-...++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999877777777666655444
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.69 E-value=2.3e-15 Score=109.98 Aligned_cols=130 Identities=17% Similarity=0.084 Sum_probs=107.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++..+|.. ...++..++.++..
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~~l~~~~~~ 261 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-----LSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-----HHHHHHHHHHHHHH
Confidence 4456677888889999988888888888888888888888888999998888888877651 13456678888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.|++++|+..+++++...|+.. ....++.++...|++++|+..+.+++...|++.
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 9999999999999888888764 447888888889999999999999988888873
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.69 E-value=1.3e-15 Score=111.16 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=106.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+.+|+++++..|.+..++..++.++...|++++|+..++++++..|..... .....+..+|.++..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHh
Confidence 5677788888888888888888888888888888888888888888888888888877653211 012345567888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.+|+++++.+|....+++.+|.++...|++++|+..+.+++...|.+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 8888888888888888888888888888888888888888888888888877764
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.67 E-value=1.8e-15 Score=109.12 Aligned_cols=109 Identities=11% Similarity=-0.002 Sum_probs=102.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|...+..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|. ...+++.+|.+++.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL 116 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 116 (164)
.|++++|+..|++++..+|++..+...++.+...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887776554
No 41
>PLN02789 farnesyltranstransferase
Probab=99.67 E-value=6.1e-15 Score=104.60 Aligned_cols=132 Identities=8% Similarity=0.054 Sum_probs=121.3
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
++...+.+++|+..+.++|..+|++..+|...+.++...| .+++++..+.++++.+|+ +..+|...+.+....
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l 119 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHc
Confidence 4566789999999999999999999999999999999998 579999999999999999 788999999999888
Q ss_pred cCH--HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170 83 KNV--DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG 141 (164)
Q Consensus 83 ~~~--~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~ 141 (164)
|+. ++++.++.+++..+|++..+|..++.++...|++++++..+.++++.+|.+.....
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence 874 78899999999999999999999999999999999999999999999999944333
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.6e-15 Score=110.91 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=126.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-ARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~ 80 (164)
|..|..+++++-|..+|.+++.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..-+....... -...+..+|.++.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 556788999999999999999999999999999999999999999999999999954433221110 1345678999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPL 147 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~ 147 (164)
+++.+++|+.+|++++...|.+...+-..|.+|..+|+++.|+++|.+++.+.|++......+...+
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999955555555443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.3e-15 Score=109.97 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=103.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.+|....+.++-...|.++.+++|.++++|+..|++++-.+++++|+.-|++++.++|. +.-.+..++-..++
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYIQLCCALYR 440 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHHHH
Confidence 456667777778888888888888888888888888888888888888888888888887 66777777778888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++.+++++..|+.+++.+|+.++.+...|.++..+++++.|+..|.+++.+.|..
T Consensus 441 ~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 8888888888888888888888888888888888888888888888888888773
No 44
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.65 E-value=3.7e-15 Score=93.56 Aligned_cols=99 Identities=18% Similarity=0.072 Sum_probs=93.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|. ....++.+|.++..
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~ 97 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD------DPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPY 106 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~ 106 (164)
.|++++|+.+++++++.+|++....
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999887643
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.3e-15 Score=107.31 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=136.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..++-.|++-.|.+.|+++|+++|.+...|..+|.+|....+.++-...|.++.+++|. ++.+++..|++++.
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~------n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE------NPDVYYHRGQMRFL 406 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC------CCchhHhHHHHHHH
Confidence 445677899999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT 155 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 155 (164)
.+++++|+.-|++++.++|++.-++.+++.+.++.+++++++..|+.++...|.-.....++...+.-...|+.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999987777777766555555543
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=9.9e-15 Score=111.49 Aligned_cols=128 Identities=17% Similarity=0.243 Sum_probs=123.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..++..|++++|.+++.++|+.+|.++.+|+.+|.+|.++|+.+++....-.|..+.|+ +...|..++.....
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~------d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK------DYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHh
Confidence 456677899999999999999999999999999999999999999999999999999999 78999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
+|++.+|+-||.++++.+|.+....+..+.+|.++|+...|.+.+.+++...|.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999999999999999999999999999999993
No 47
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.65 E-value=1.9e-14 Score=96.62 Aligned_cols=152 Identities=18% Similarity=0.092 Sum_probs=132.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
+..+...|+-+.+..+..++...+|.+..+...+|...+..|++.+|+..+.++....|+ +..++..+|-+|.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq 146 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHH
Confidence 345677888888899999988889999888888899999999999999999999999998 78999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccchhh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDDI 159 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (164)
.|++++|...|.++++..|+++.+..++|..+...|+.+.|..++..+....+.+..+..-+.++......|...++|
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999999999999999999999999999999999999999888887866666666677777776666555
No 48
>PLN02789 farnesyltranstransferase
Probab=99.64 E-value=2.1e-14 Score=101.87 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=123.3
Q ss_pred chhhhhcC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMG-KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG--EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
+.++...| ++++++..+++++..+|++..+|...+.+....|+. ++++.++.++++.+|. +..+|..++.+
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~ 151 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWV 151 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHH
Confidence 34566677 689999999999999999999999999999988874 6789999999999999 78999999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc---CCH----HHHHHHHHHHHhhCCCcchhhhHhhhhhh
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL---DRN----AEAKEEFAKYRQLSPKKFEVEGYLRTPLS 148 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~----~~A~~~l~~~~~~~p~~~~~~~~~~~~~~ 148 (164)
....|+|+++++++.++++.+|.+..+|..++.++... |.. ++++.+..+++..+|++.....++..++.
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 99999999999999999999999999999999998776 333 57899999999999999665555555443
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=5.7e-14 Score=110.54 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=112.3
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
++....|++++|+..+.++....|....++..+|.++...|++++|+..+++++..+|. +..++..++.++...
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~ 96 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHC
Confidence 45667888999999999988888888888999999999999999999999999999888 677788888889999
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
|++++|+..+++++...|++.. ++.+|.++...|+.++|+..+++++...|++.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999998998888 88889999899999999999999999999883
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=2.4e-14 Score=112.67 Aligned_cols=130 Identities=12% Similarity=-0.013 Sum_probs=120.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPL---------------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE 67 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 67 (164)
..+...|++++|+.+++++....|. ...++..+|.++...|++++|+..+++++...|.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------ 391 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------ 391 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 3567889999999999999998773 2457788999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
+..++..+|.++...|++++|++.+++++..+|++...++.+|.++...|++++|...+++++...|++..
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999943
No 51
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.62 E-value=7.7e-15 Score=92.47 Aligned_cols=92 Identities=20% Similarity=0.114 Sum_probs=88.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...|++++|+..|+-+...+|.+...|+++|.++..+|+|.+|+..|.+++.++|+ ++...+.+|.|++.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d------dp~~~~~ag~c~L~ 115 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID------APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred ccCHHHHHHHHHHHHHhC
Q 031170 82 QKNVDEALKSYQELEIED 99 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~ 99 (164)
.|+.+.|.+.|+.++...
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=1.6e-14 Score=96.28 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=91.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLM-DRCGE--GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
||.++...|++++|+..|+++++..|+++.++..+|.++ ...|+ +++|...++++++.+|+ +..++..+|.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~------~~~al~~LA~ 152 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN------EVTALMLLAS 152 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC------ChhHHHHHHH
Confidence 478899999999999999999999999999999999975 77787 59999999999999999 7899999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.++..|++++|+.+++++++..|.+..
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999887654
No 53
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.61 E-value=1e-13 Score=100.13 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=112.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..++..|++++|+..+..+++..|+|+..+...+.++++.++..+|.+.+++++..+|. ....++.+|+.+++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~ 386 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHh
Confidence 455778899999999999999999999999999999999999999999999999999998 67888899999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.|++++|+..+...+..+|+++..|..++..|..+|+..++...........
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999888887666555555555554444
No 54
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.60 E-value=4e-14 Score=102.22 Aligned_cols=108 Identities=18% Similarity=0.148 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
+...|...+..|+|++|+..|.++++.+|. +..++..+|.++...|++++|+..+++++..+|.+..+++.+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 556788999999999999999999999998 78899999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170 112 IYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 112 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
++..+|++++|+..|++++.+.|.+.....++..
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999555445443
No 55
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=105.77 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170 12 QDARNVFEEILAGNP--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL 89 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 89 (164)
..-.+.|-.+-...| .+++++..||.+|...|+|+.|+++|+.|+...|+ +...|..+|-.+..-.+..+|+
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAI 484 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAI 484 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHH
Confidence 344567777777788 79999999999999999999999999999999999 7899999999999999999999
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..|.+++.+.|...++++++|+.++.+|.+++|+.+|-.++.+.+.
T Consensus 485 sAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 485 SAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999877
No 56
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.59 E-value=1.2e-13 Score=84.66 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRP 105 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~ 105 (164)
++.++.+|..+...|++++|+..|.++++..|+... ...+++.+|.++...|++++|+.+|++++..+|++ ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 467888999999999999999999999998876221 14577889999999999999999999999988875 567
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++.+|.++...|++++|+..+.+++...|++
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 8899999999999999999999999999987
No 57
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.4e-14 Score=97.20 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
+..-|.-+.+.++|.+|+..|.+||.++|. ++.++...|.+|.++|.++.|++..+.++.++|....+|..+|.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 556778888999999999999999999999 78888899999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170 112 IYSLLDRNAEAKEEFAKYRQLSPKKFEVEG 141 (164)
Q Consensus 112 ~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~ 141 (164)
+|.-+|++++|++.|++++.++|++...+.
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999999999999999999943333
No 58
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5e-13 Score=91.83 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=115.1
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc---CHH
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK---NVD 86 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~ 86 (164)
+.+.-+.-++.-+..+|+|++.|..+|.+|+.+|+++.|...|.+++++.|+ ++.++..+|.++..+. +..
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccH
Confidence 4677888899999999999999999999999999999999999999999999 7888888888876554 567
Q ss_pred HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 87 EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
++...+.+++..+|.+..+.+.+|..+++.|++.+|+..++..++..|.+-+-...+
T Consensus 211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 899999999999999999999999999999999999999999999998884333333
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=1.8e-13 Score=107.41 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=111.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
+.+..+.|+++.|++.|+++++.+|.++.+...++.++...|++++|+.++++++ +|.+. .......+|.++..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~----~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI----SSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC----CHHHHHHHHHHHHH
Confidence 4567889999999999999999999996555588888889999999999999999 44311 34444455889999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+|++++|+..|+++++.+|+++.++..++.++...++.++|+..+.+++..+|..
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 9999999999999999999999999988899999999999999999999999986
No 60
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.55 E-value=1.4e-13 Score=84.25 Aligned_cols=101 Identities=18% Similarity=0.101 Sum_probs=90.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..+++++..+|+... ...++..+|.+
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~~~~~ 85 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---APDALLKLGMS 85 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---ccHHHHHHHHH
Confidence 567889999999999999999999887 578999999999999999999999999999887321 25678899999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
+...|++++|+.++++++...|++..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999999999999999999987653
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=7.6e-14 Score=100.76 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=128.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.+-+.+|++++|.+.|.+++..+....++++++|..+..+|+.++|+++|-++-.+--+ +..+++.++.+|..
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~ 570 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYEL 570 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999999999999999999998877666 68999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPL 147 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~ 147 (164)
+.+..+|++++-++...-|+++.++..++.+|.+.|+-.+|..+.-...+..|.+.....|+...+
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999977777776643
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.55 E-value=4.4e-13 Score=103.53 Aligned_cols=120 Identities=8% Similarity=0.037 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALK 90 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 90 (164)
..+++.-.......+|.+++++..+|.+....|.+++|...++.++...|+ +..++..++.+..+++++++|+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHH
Confidence 344445555556678999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 91 SYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 91 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+++++..+|++...++.+|.++.+.|++++|++.|++++...|++
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~ 187 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF 187 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999988887
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.55 E-value=3.7e-14 Score=81.90 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=62.8
Q ss_pred cCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 8 MGKTQDARNVFEEILAGNPL--SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
+|+|++|+.+++++++..|. +...++.+|.++++.|+|++|+..+++ .+.++. +....+.+|.+++.+|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhCCH
Confidence 57888888888888888885 455677788888888888888888888 666666 566777778888888888
Q ss_pred HHHHHHHHHH
Q 031170 86 DEALKSYQEL 95 (164)
Q Consensus 86 ~~A~~~~~~~ 95 (164)
++|+++++++
T Consensus 75 ~eAi~~l~~~ 84 (84)
T PF12895_consen 75 EEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 8888888764
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.55 E-value=1.9e-13 Score=79.56 Aligned_cols=98 Identities=28% Similarity=0.441 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG 110 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 110 (164)
+++.+|.++...|++++|+..++++++..|. ...++..+|.++...+++++|+.++++++...|.+...++.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 4566777777777777787777777777776 4566677777777777788888777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 111 MIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 111 ~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
.++...|++++|...+.+++...|
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCC
Confidence 777777777777777777777665
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=3.7e-13 Score=90.50 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=114.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|+.++..|+|..|+..++++....|++..+|..+|.+|.+.|++++|...|.+++++.|. .+.+...+|-.+.-
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L 180 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999998 78888899999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
.||++.|..++.++...-+.+..+..+++.+....|++.+|..+..+-
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 999999999999999888889999999999999999999998875544
No 66
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.54 E-value=5.6e-13 Score=84.74 Aligned_cols=121 Identities=24% Similarity=0.198 Sum_probs=102.6
Q ss_pred hhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 6 SEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
...++...+...++.+++.+|+. ..+.+.+|.+++..|++++|+..|++++...|+... ...+.+.+|.++..+
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l---~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL---KPLARLRLARILLQQ 98 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH---HHHHHHHHHHHHHHc
Confidence 35788999999999999999998 556788999999999999999999999998755211 245777899999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
|++++|+..++.+ ...+-.+..+..+|.++...|++++|+..|++++
T Consensus 99 ~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999763 3334456677899999999999999999999874
No 67
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.53 E-value=1.7e-13 Score=79.80 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=88.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..++++++..|.++.++..+|.++...+++++|+..++++++..|. ...++..+|.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~ 79 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chhHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999999999999999988 5678889999999
Q ss_pred HccCHHHHHHHHHHHHHhCCC
Q 031170 81 LQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~ 101 (164)
..|+++.|..++.+++...|.
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999988763
No 68
>PRK15331 chaperone protein SicA; Provisional
Probab=99.52 E-value=7.2e-13 Score=83.99 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=100.1
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
+.++..+..+..|.-+..+|++++|...|+-++-.+|. +...++.+|-++..+++|++|+..|.-+...+++++
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~------n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY------NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 34445667889999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170 104 RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
.+.+..|.++..+|+.+.|+..|..++. .|.+...+..
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence 9999999999999999999999999988 4665333333
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.6e-13 Score=95.31 Aligned_cols=130 Identities=13% Similarity=0.069 Sum_probs=108.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
|+..++++-|+.+|++++.....+++.+.++|.|++-.+++|-++..|++++......+. ..++|+.+|.+....||
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~---aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ---AADVWYNLGFVAVTIGD 410 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch---hhhhhhccceeEEeccc
Confidence 444455555555555555555556778888999999999999999999999887653322 37899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
+..|..+|+-++..+|++.+++.++|.+-.+.|+.++|..+++.+....|.-+
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 99999999999999999999999999999999999999999999999999873
No 70
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.51 E-value=1.8e-13 Score=75.97 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-NVDEALKSYQELEIEDP 100 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p 100 (164)
++.+|..+|.+++..|++++|+..|.++++.+|+ +..++..+|.++..+| ++++|+..++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455666666666666666666666666666666 5666666666666666 56666666666666655
No 71
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.51 E-value=5.6e-13 Score=87.11 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=99.0
Q ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 18 FEEILAGNP--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 18 ~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
+.+.+..++ ....+++.+|..+...|++++|+.+|+++++..|+... ...++..+|.++...|++++|+.+++++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444433 45667899999999999999999999999998765211 2467889999999999999999999999
Q ss_pred HHhCCCCchhhhhHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCcc
Q 031170 96 EIEDPNDFRPYFCKGMIYSLLDR--------------NAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 96 ~~~~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~l~~~~~~~p~~~ 137 (164)
+...|.+..++..+|.++...|+ +++|+..+++++...|+++
T Consensus 99 l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99999999999999999999887 6789999999999999984
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.2e-12 Score=90.62 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=101.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||+-|+..|-++.|.+.|..+......-..+...+..+|....+|++|++.-++..+..+...... ...++..+|..+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e-IAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE-IAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-HHHHHHHHHHHHh
Confidence 356677777777888888777766555566777777888888888888888888877776533221 2455557777777
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
...+.+.|+..+.+++..+|+...+-+.+|.+....|++..|++.+..++..+|..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 77888888888888888888888888888888888888888888888888887765
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.50 E-value=1.4e-12 Score=84.86 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=106.4
Q ss_pred hhcCCchHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 6 SEMGKTQDARNVFEEILAGNPLS--FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
+-.+.|..+...+.+.++..+.+ ...++.+|.++...|++++|+..|++++.+.|+... ...++..+|.++...|
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD---RSYILYNIGLIHTSNG 86 (168)
T ss_pred ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHHcC
Confidence 34456888888888887777666 556799999999999999999999999998764211 2457889999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCcc
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYS-------LLDRNA-------EAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~-------~A~~~l~~~~~~~p~~~ 137 (164)
++++|+.++++++...|.....+..+|.++. ..|+++ +|+.++.+++...|.+.
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999999999999999888 677766 66666777888888763
No 74
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.50 E-value=5.1e-12 Score=84.67 Aligned_cols=137 Identities=19% Similarity=0.187 Sum_probs=109.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..++..|+|++|+..|++++...|+. +.+.+.+|.++...|++++|+..+++.++..|.... ...+++.+|.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~~A~Y~~g~~ 88 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---ADYALYMLGLS 88 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhhHHHHHHHH
Confidence 567889999999999999999998876 567899999999999999999999999999998543 25677888888
Q ss_pred HHHcc-----------CHHHHHHHHHHHHHhCCCCchh-----------------hhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 79 KFLQK-----------NVDEALKSYQELEIEDPNDFRP-----------------YFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 79 ~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~-----------------~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
++.+. ...+|+..|+..+...|++..+ -+..|..|...|.+..|+..++.++
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 76543 3458999999999999997643 2346888889999999999999999
Q ss_pred hhCCCcchhhh
Q 031170 131 QLSPKKFEVEG 141 (164)
Q Consensus 131 ~~~p~~~~~~~ 141 (164)
+..|+......
T Consensus 169 ~~yp~t~~~~~ 179 (203)
T PF13525_consen 169 ENYPDTPAAEE 179 (203)
T ss_dssp HHSTTSHHHHH
T ss_pred HHCCCCchHHH
Confidence 99999844433
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5.1e-13 Score=97.46 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=53.2
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
.++..|+|..|+..|.++|+.+|+++..|.+.|.||...|.+..|+...+++++++|+ ....++..|.++..+.
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------FIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555554 4444455555555555
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYS 114 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (164)
+|++|++.|++++..+|++.++.-....++.
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 5555555555555555554444434333333
No 76
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.49 E-value=1.3e-12 Score=90.29 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C
Q 031170 27 LSFEALFENALLM-DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN---D 102 (164)
Q Consensus 27 ~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~ 102 (164)
.+...++..|..+ +..|+|++|+..|++.++..|+... .+.+++++|.+|+..|++++|+..|++++..+|+ .
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 3566777777765 6679999999999999999998432 1578899999999999999999999999988777 4
Q ss_pred chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++++.+|.++...|+.++|+..|+++++..|+.
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 6788899999999999999999999999999987
No 77
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.8e-13 Score=104.54 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=116.1
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
..+.+++|++.|.++++.+|.|..+-.++|.++...|++.+|+.+|.+..+.-.+ ...+|+.+|.||..+|+|.
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999887665 6789999999999999999
Q ss_pred HHHHHHHHHHHhCC--CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 87 EALKSYQELEIEDP--NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 87 ~A~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
.|++.|+.+++..- ++..++..+|.++...|.+.+|...+..++...|.+..
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 99999999998753 46788999999999999999999999999999999954
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-12 Score=95.52 Aligned_cols=138 Identities=18% Similarity=0.154 Sum_probs=119.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCC--------------------------CCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNP--------------------------LSFEALFENALLMDRCGEGEAVIKRLEEA 55 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p--------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a 55 (164)
|..+...++++.|+.+|.+++...- .-..--...|+.++..|+|.+|+..|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4567777888888888888776532 22233445688999999999999999999
Q ss_pred HhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 56 LEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
|+.+|+ +...+...|-||.+.|++..|++..+.+++.+|++...++..|.++..+.++++|.+.|++++..+|.
T Consensus 385 Ikr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 385 IKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999 78888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHhhh
Q 031170 136 KFEVEGYLRT 145 (164)
Q Consensus 136 ~~~~~~~~~~ 145 (164)
+.....++..
T Consensus 459 ~~e~~~~~~r 468 (539)
T KOG0548|consen 459 NAEAIDGYRR 468 (539)
T ss_pred hHHHHHHHHH
Confidence 8555555544
No 79
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.47 E-value=2e-13 Score=78.83 Aligned_cols=84 Identities=24% Similarity=0.215 Sum_probs=72.8
Q ss_pred HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH
Q 031170 41 RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA 120 (164)
Q Consensus 41 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 120 (164)
.+|+|+.|+.+++++++..|.+. ...+++.+|.+++..|+|++|+.++++ .+.+|.+....+.+|.++..+|+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 36899999999999999999621 256777899999999999999999999 8788888888889999999999999
Q ss_pred HHHHHHHHH
Q 031170 121 EAKEEFAKY 129 (164)
Q Consensus 121 ~A~~~l~~~ 129 (164)
+|+.+|.++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 80
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.47 E-value=1.5e-11 Score=84.43 Aligned_cols=141 Identities=9% Similarity=0.073 Sum_probs=114.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEAL---FENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..++..|+|++|++.|++++...|..+.+. +.+|.++.+.+++++|+..+++.++..|+.... ..+++.+|.+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~~a~Y~~g~~ 115 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DYVLYMRGLT 115 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---HHHHHHHHHh
Confidence 4556788999999999999999999987765 889999999999999999999999999986542 6677888877
Q ss_pred HHHcc---------------C---HHHHHHHHHHHHHhCCCCchh-----------------hhhHHHHHHhcCCHHHHH
Q 031170 79 KFLQK---------------N---VDEALKSYQELEIEDPNDFRP-----------------YFCKGMIYSLLDRNAEAK 123 (164)
Q Consensus 79 ~~~~~---------------~---~~~A~~~~~~~~~~~p~~~~~-----------------~~~~~~~~~~~~~~~~A~ 123 (164)
+...+ | ..+|+..|+..+...|++.-+ -+..|..|.+.|.+..|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 64443 1 357889999999999986432 134578888899999999
Q ss_pred HHHHHHHhhCCCcchhhhHhhh
Q 031170 124 EEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 124 ~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
.-++.++...|+.......+..
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHH
Confidence 9999999999998544444333
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.47 E-value=3.3e-12 Score=88.36 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=88.8
Q ss_pred hhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 6 SEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
...|+|++|+..|++.++.+|++ +.+++.+|.+++..|++++|+..|+++++.+|+... .+.+++.+|.++..+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~---~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK---AADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhHHHHHHHHHHHHc
Confidence 45699999999999999999998 579999999999999999999999999999987443 378889999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCchh
Q 031170 83 KNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
|++++|+..|+++++.+|++..+
T Consensus 231 g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999998754
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.9e-12 Score=95.13 Aligned_cols=132 Identities=15% Similarity=0.092 Sum_probs=76.2
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
...|+..+=..+-.++.+.+|+.+-.|+..|..|.-.|++++|..+|.|+..++|. ..++|+..|..+.-+|+.
T Consensus 289 ~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~------fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT------FGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc------ccHHHHHHhHHhhhcchH
Confidence 33444444444444444445555555666666666666666666666666666665 556666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
++|+.+|..|-+..|....+.+.+|.-|..+++.+-|...|.+++.+.|.+..+...+
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El 420 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL 420 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 6666666666666666666666666666666666666666666666666664333333
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=2e-12 Score=89.50 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=117.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
..+|...++|++|+++-+++.+..|.. ...+..++..+....+.+.|+..+.++++.+|+ +.++-..+|
T Consensus 148 l~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG 221 (389)
T COG2956 148 LNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILG 221 (389)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhh
Confidence 357889999999999999999988765 456788999999999999999999999999999 899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCc-hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDF-RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++...|+|++|++.++.+++.+|... .+.-.+..+|.+.|+.++.+..+.++....+..
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 999999999999999999999999874 556688899999999999999999999888776
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.46 E-value=3.1e-13 Score=75.08 Aligned_cols=67 Identities=30% Similarity=0.491 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p 134 (164)
++.++..+|.+++..|++++|+.+|++++..+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36788999999999999999999999999999999999999999999999 79999999999999988
No 85
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9.3e-13 Score=93.69 Aligned_cols=141 Identities=20% Similarity=0.136 Sum_probs=122.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE------------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEAR 69 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 69 (164)
+.++...++.+.|+..|++++.++|+... .+..-|+-.++.|.+..|.+.|..+|.++|++... +.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~--na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT--NA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch--hH
Confidence 56777888999999999999999998633 46678889999999999999999999999997655 45
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
-.+..+|.+....|+..+|+.-.+.++.++|....++...|.++..+++|++|++.++++.+.... ...+..+..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLRE 362 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence 667788999999999999999999999999999999999999999999999999999999988755 334444443
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.45 E-value=2.7e-12 Score=83.57 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=83.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|.++...|++++|+..|++++...|+. +.++..+|.++...|++++|+..+++++.+.|. ....+..+|.+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~------~~~~~~~la~i 115 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF------LPQALNNMAVI 115 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHH
Confidence 567888999999999999999887763 458999999999999999999999999999887 45556666666
Q ss_pred HH-------HccCHH-------HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 79 KF-------LQKNVD-------EALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 79 ~~-------~~~~~~-------~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
+. ..|+++ +|+.+|++++..+|.+.. ..+..+...|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~ 166 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGR 166 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcC
Confidence 66 788877 556666667777776553 33343444443
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.45 E-value=5.2e-12 Score=91.32 Aligned_cols=125 Identities=15% Similarity=0.034 Sum_probs=68.5
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hccccchhhhhhhHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE----IAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~la~~ 78 (164)
.++...|++++|...+++++..+|++..++.. +..+...|.+..+.....+++. ..|. ...+...+|.+
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~a~~ 123 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD------YWYLLGMLAFG 123 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC------cHHHHHHHHHH
Confidence 34566677777777777777777777655443 3333333333222222222222 1111 22333345556
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
+..+|++++|+..+++++...|++..++..+|.++...|++++|+.++.+++...|
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 66666666666666666666666665566666666666666666666666665554
No 88
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.45 E-value=4.5e-12 Score=91.90 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=108.9
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
.+...++++.|++.++++.+.+|+ +...++.++...++-.+|+..+.++++..|. ....+...+..+...+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcC
Confidence 455678999999999999998874 6677899999999999999999999999998 6778888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
+++.|+.+.++++...|.+...|+.++.+|...|++++|+-.++.+-..
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999999999999999999999999999999999988866433
No 89
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.3e-11 Score=82.99 Aligned_cols=132 Identities=18% Similarity=0.049 Sum_probs=119.7
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
..-.|+.+.|..+++++....|++..+....|..+...|++++|+++|+..+.-+|. +..++...--+.-.+|+
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt------~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT------DTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc------hhHHHHHHHHHHHHcCC
Confidence 345788999999999999999999999999999999999999999999999999998 56666666667778999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
.-+||+.+...++.+++|.++|..++.+|...|++++|.-++++++-+.|-++..-..
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998543333
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.2e-12 Score=88.90 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=95.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||+||...|-+.+|.+.++..++..| .++.+..++.+|....++..|+..+.+.++..|. +...+..++.++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~------~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF------DVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc------hhhhhhhhHHHHH
Confidence 46777777777788888877777766 4466667777777777777777777777777776 5566667777777
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+++++.|.++|+.+++.+|.+.++.-..|.-|+..++.+.|+.+|++.+.+--.+
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s 357 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS 357 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC
Confidence 77777777777777777777777777666777777777777777777777665444
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.44 E-value=4.9e-12 Score=82.69 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=82.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+.++++..|. ....+..+|.+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~ 115 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------QPSALNNIAVI 115 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHH
Confidence 567888999999999999999887664 468999999999999999999999999999998 67778888999
Q ss_pred HHHccC--------------HHHHHHHHHHHHHhCCCC
Q 031170 79 KFLQKN--------------VDEALKSYQELEIEDPND 102 (164)
Q Consensus 79 ~~~~~~--------------~~~A~~~~~~~~~~~p~~ 102 (164)
+...|+ +++|++++++++..+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 988877 567777777777777776
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.44 E-value=7.1e-12 Score=98.58 Aligned_cols=129 Identities=17% Similarity=0.118 Sum_probs=107.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
+.++...|+.++|+.++++++...|........+|.++..+|++++|++.|+++++.+|+ ++.++..++.++..
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~ 148 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhh
Confidence 356677899999999999999544555555666688999999999999999999999999 67788888999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.++.++|+..++++...+|..... ..++.++...++..+|++.+++++...|++.
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999998985543 4455555557777779999999999999983
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.43 E-value=4e-13 Score=73.74 Aligned_cols=60 Identities=28% Similarity=0.369 Sum_probs=34.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 445555555555555555555555555555555555555555555555555555555554
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.43 E-value=1.2e-12 Score=71.84 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
.+|..+...|++++|+..|+++++.+|. +..++..+|.++..+|++++|+.+|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3455566666666666666666666665 55666666666666666666666666666665554
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.43 E-value=5.1e-12 Score=88.45 Aligned_cols=94 Identities=20% Similarity=0.378 Sum_probs=60.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..++..|++.+|+..|..++..+|++..+++..|.+|+..|+-.-|+.-+.+.+++-|+ ...+....|.++.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD------F~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD------FMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc------HHHHHHHhchhhhh
Confidence 445556666677777777777777766666666666666666666666666666666666 55555566666666
Q ss_pred ccCHHHHHHHHHHHHHhCCC
Q 031170 82 QKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~ 101 (164)
+|++++|+.-|.+++..+|+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s 138 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS 138 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC
Confidence 66666666666666666554
No 96
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=4e-12 Score=98.32 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=77.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL---SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..++..|+|+.+..+...++...-. -.+.++.+|.++..+|+|++|..+|.++++.++++ ..-.++.+|++
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~l~~~GlgQm 351 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FVLPLVGLGQM 351 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----ccccccchhHH
Confidence 44455666666666666666654322 23335666666666666666666666666666552 13344556666
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC----CHHHHHHHHHHHHhhCCCc
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD----RNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~A~~~l~~~~~~~p~~ 136 (164)
|+..|+++.|+.+|+++++..|++.+....+|.+|...+ ..++|..++.+++...|.+
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 666666666666666666666666666666666665543 4456666666666666666
No 97
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.9e-12 Score=89.90 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=114.7
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.+++..|++++|+..|+++...+|.....+-..|.++...|+++.-..+....+.++.. ...-|+.-+...+
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~------ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY------TASHWFVHAQLLY 311 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc------chhhhhhhhhhhh
Confidence 4677888888888888888888888888888888888888888888887777777777654 4667777888889
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..+++..|+.+.+++|..+|++.++++..|.++..+|+.++|+-.|+.+..+.|.+
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999988
No 98
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-12 Score=92.72 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=124.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh------hhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE------ARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~l 75 (164)
+.++...|++++|...--..+++++.+.++++..|.++.-.++.+.|+..|+++++++|+-.+... ....+...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 578889999999999999999999999999999999999999999999999999999998543221 13455567
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCch----hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDFR----PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTP 146 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 146 (164)
|+-.++.|.+..|.++|.++|.++|.+.. .+.+++.+...+|+..+|+..++.++.++|.. ...++...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ikall~ra 328 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKALLRRA 328 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHHHHHHH
Confidence 99999999999999999999999998754 46788899999999999999999999999987 55665543
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=8.8e-12 Score=94.47 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=121.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...+..++|..++.++-+++|-.+..|+..|.++..+|.+.+|...|..++.++|+ .......+|.++..
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred ccCHHHHHH--HHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALK--SYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|+..-|.. .+..+++.+|.+.++|+.+|.++...|+.++|.++|+.++.+.+.+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 999888887 9999999999999999999999999999999999999999998877
No 100
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.41 E-value=1.2e-11 Score=93.00 Aligned_cols=121 Identities=21% Similarity=0.203 Sum_probs=101.9
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------cHHHHHHHHHHHhh--ccccchhhhhhhHHHHHHHH
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGE--------GEAVIKRLEEALEI--AEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~la~~ 78 (164)
++.+.|+.+|+++++.+|++..++-.++.++..... ...+.....+++.. +|. .+.++..+|..
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~------~~~~~~ala~~ 429 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV------LPRIYEILAVQ 429 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC------ChHHHHHHHHH
Confidence 347899999999999999999999998887765432 23445555555554 343 45778888999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+...|++++|...+++++..+| +..++..+|.++...|+.++|++.+.+++.++|.+
T Consensus 430 ~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 430 ALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999 47899999999999999999999999999999997
No 101
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=2e-11 Score=89.67 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=101.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-----------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK----------------- 64 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------- 64 (164)
++++...|++++|+..++++.+..|+++.++..++.++...|+|++|+..+.+..+..+....
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999888777754332110
Q ss_pred -------------------hhhhhhHHHHHHHHHHHcc-------------------------------CHHHHHHHHHH
Q 031170 65 -------------------LKEARDVRFIMAQIKFLQK-------------------------------NVDEALKSYQE 94 (164)
Q Consensus 65 -------------------~~~~~~~~~~la~~~~~~~-------------------------------~~~~A~~~~~~ 94 (164)
....+.+...+|..+...| +.+++++..++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 0002233344455554444 44555555555
Q ss_pred HHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 95 LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 95 ~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.++..|+++..++.+|.++...+++++|.++|++++...|++
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 555567777778888999999999999999999999999987
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.41 E-value=1.6e-11 Score=86.00 Aligned_cols=137 Identities=14% Similarity=0.167 Sum_probs=100.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-------------- 67 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------------- 67 (164)
|.+|..+|+..-|+..+.+++.+.|+...+....|.+++++|++++|..-|.+.++-+|+++....
T Consensus 79 aT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 79 ATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred HHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 456677777777777777777777777777777777777777777777777777777765442111
Q ss_pred -----------------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 68 -----------------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 68 -----------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
....+...+.||...|+...||.-+..+.++..++.+.++.++.+++..|+
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 344555667788888888888888888888877778888888888888888
Q ss_pred HHHHHHHHHHHHhhCCCcch
Q 031170 119 NAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 119 ~~~A~~~l~~~~~~~p~~~~ 138 (164)
.+.++...+.+++++|+...
T Consensus 239 ~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHHHHHHHHHHHccCcchhh
Confidence 88888888888888887733
No 103
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=2.6e-11 Score=89.45 Aligned_cols=128 Identities=16% Similarity=0.078 Sum_probs=115.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhh-hHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEAR-DVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~ 80 (164)
|.+....|+++.|.+.+.++.+..|+....+...|.+..++|+++.|..++.++.+..|+ .. .+....+.++.
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~------~~l~~~~~~a~l~l 164 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN------DNILVEIARTRILL 164 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------CchHHHHHHHHHHH
Confidence 445677899999999999999999988888888999999999999999999999998887 33 45566799999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..|++++|...++...+..|+++.++..++.++...|++++|.+.+.+..+..+.
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999977443
No 104
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=9.8e-12 Score=91.68 Aligned_cols=119 Identities=9% Similarity=0.059 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhH--HHHHHHHHHHccCH
Q 031170 12 QDARNVFEEILAGNP----LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDV--RFIMAQIKFLQKNV 85 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~ 85 (164)
+++.+.+.++....| +++.++..++..+...|++++|.+.++++++..|++ ... ...........++.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~------~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD------RAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------ccchhHHHHHhhhcCCCCh
Confidence 344444445544444 355555555555555555555555555555555542 211 11122222333555
Q ss_pred HHHHHHHHHHHHhCCCCc--hhhhhHHHHHHhcCCHHHHHHHHH--HHHhhCCCc
Q 031170 86 DEALKSYQELEIEDPNDF--RPYFCKGMIYSLLDRNAEAKEEFA--KYRQLSPKK 136 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~l~--~~~~~~p~~ 136 (164)
+.+++.++++++..|+++ ..+..+|+++...|++++|.++|+ .+++..|++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 555555555555555555 445555555555555555555555 344445544
No 105
>PRK11906 transcriptional regulator; Provisional
Probab=99.39 E-value=1.8e-11 Score=88.94 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=111.3
Q ss_pred CchHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---C------CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 10 KTQDARNVFEEIL---AGNPLSFEALFENALLMDRC---G------EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 10 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
..+.|..+|.+++ ..+|+...++..++.|++.. | .-.+|....+++++++|. ++.++..+|.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~------Da~a~~~~g~ 346 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV------DGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC------CHHHHHHHHH
Confidence 3468899999999 99999999999999988755 1 334788899999999999 7999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+....++++.|+..|++++..+|+...+++..|++....|+.++|++.++++++++|..
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 99999999999999999999999999999999999999999999999999999999987
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=4.9e-11 Score=89.52 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++.+|+.|...|++++|+.+.+++|..+|..++.++..|.++...|++.+|.+.+..+..+++.|
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 446789999999999999999999999999999999999999999999999999999999999998
No 107
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=6.9e-12 Score=93.33 Aligned_cols=133 Identities=26% Similarity=0.178 Sum_probs=109.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-h-hhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-K-EARD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~-~~~~ 70 (164)
+|.+|...++|.+|+..|++++++ +|.-..++..||.+|..+|++++|..++++++++....... . ....
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 467899999999999999999986 44446678999999999999999999999999986541111 0 1245
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDP--------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.+..++.++..++++++|+.++++++++.- .-.....++|.+|..+|++++|.+.+++++.+.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 566889999999999999999999987632 223456789999999999999999999999885
No 108
>PRK15331 chaperone protein SicA; Provisional
Probab=99.38 E-value=9.2e-12 Score=79.01 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=87.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.-++..|++++|...|+-+...+|.+++.|+++|.++..+++|++|+..|..+..++++ ++...+..|.|++.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~------dp~p~f~agqC~l~ 117 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN------DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC------CCCccchHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999987 67788899999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
.|+...|+.+|+.++.. |.+.
T Consensus 118 l~~~~~A~~~f~~a~~~-~~~~ 138 (165)
T PRK15331 118 MRKAAKARQCFELVNER-TEDE 138 (165)
T ss_pred hCCHHHHHHHHHHHHhC-cchH
Confidence 99999999999999984 5533
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.38 E-value=2.2e-11 Score=88.03 Aligned_cols=120 Identities=14% Similarity=0.068 Sum_probs=100.2
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA 88 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 88 (164)
+....+...+......+|....++..+|.++..+|++++|+..++++++..|+ ...++..+|.++...|++++|
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 94 GMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHH
Confidence 34444444444444567777788888999999999999999999999999998 677888999999999999999
Q ss_pred HHHHHHHHHhCCCCch----hhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 89 LKSYQELEIEDPNDFR----PYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 89 ~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
+.++++++...|.++. .++.++.++...|++++|+..+++++...|
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999998775433 355789999999999999999999987666
No 110
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.6e-11 Score=89.05 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=110.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.+|..+.+..+|++++.++...-|++|.++..+|.+|-+.|+-.+|.+++-...+.+|. +....-++|..|+.
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~------nie~iewl~ayyid 638 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------NIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc------chHHHHHHHHHHHh
Confidence 556777777888888888888888888888888888888888888888877777777777 56777788888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~ 139 (164)
..-|++|+.+|+++.-+.|+...-.+..+.|+...|++.+|...|+...+..|.+...
T Consensus 639 tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc 696 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC 696 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence 8899999999999988888877777788899999999999999999999999998443
No 111
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.38 E-value=2.7e-12 Score=70.97 Aligned_cols=67 Identities=25% Similarity=0.249 Sum_probs=56.7
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
++..|++++|+..|++++..+|++..+++.+|.++.+.|++++|...+++++...|+ ++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~------~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD------NPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT------HHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------HHHHHHHHhc
Confidence 356789999999999999999999999999999999999999999999999999888 5666666654
No 112
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.3e-11 Score=86.58 Aligned_cols=127 Identities=14% Similarity=0.079 Sum_probs=94.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK 66 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 66 (164)
|..+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+....+++..+|+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~----- 289 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN----- 289 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-----
Confidence 567788888888888888877753321 234677888888888888888888888888887
Q ss_pred hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH-HHHHHHHHHhhCC
Q 031170 67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE-AKEEFAKYRQLSP 134 (164)
Q Consensus 67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-A~~~l~~~~~~~p 134 (164)
+.-+++..|.++..+|+|+.|+..|+++++..|.+-.+...+..+.....++.+ ....|.+.+...+
T Consensus 290 -N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 -NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 677888888888888888888888888888888887777666666655444433 4667777766544
No 113
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.36 E-value=3.6e-11 Score=81.90 Aligned_cols=103 Identities=12% Similarity=0.173 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhh
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYF 107 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 107 (164)
-.|..|.-++..|+|.+|...|..-++.+|+.... +.++++||.+++.+|+++.|...|..+++..|.+ +++++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~---~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT---PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc---chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 37778888889999999999999999999875442 7889999999999999999999999999887765 56799
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|.+...+|+.++|...|.++++..|..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999987
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.35 E-value=1.7e-11 Score=96.26 Aligned_cols=129 Identities=13% Similarity=0.001 Sum_probs=112.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-------------hhhh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-------------LKEA 68 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------~~~~ 68 (164)
...+...+++++|+.+++..++..|+.+.+++.+|.++.+.+++..+.-. .++...+.+.. ...+
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGEN 115 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhh
Confidence 34566889999999999999999999999999999999999999888776 77777666321 0112
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|++++.+++...
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999999 9999999999998774
No 115
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=4.8e-11 Score=89.58 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=72.4
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 87 (164)
+.+++.|..+|.++....| ...+|+.-+.+...++..++|+.+++++++.+|. ....|+++|+++..+++.+.
T Consensus 631 n~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 631 NDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred cccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHH
Confidence 3344444444444443322 2244444444445555555555555556666665 56666666666666666666
Q ss_pred HHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 88 ALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|...|.+.++..|+.+..|+.++.+-...|+.-.|...|.++.-.+|++
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 6666666666666666666666666666666666666666666666666
No 116
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.2e-11 Score=86.68 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh---------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL---------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
....|+.+++.|+|..|...|+++++.-...... .....++..++.|+.++++|..|+....++|..+|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 4567899999999999999999998865422110 0124567789999999999999999999999999999
Q ss_pred chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
..++|..|.++..+|+++.|+..|+++++..|.|..+..-+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999999999999999995444433
No 117
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=4.7e-11 Score=87.75 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=106.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|+.+...|+.++|...++++++. |.++......+.+ ..+++++++..+++.++..|+ ++..+..+|.++..
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~------~~~l~l~lgrl~~~ 340 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD------TPLLWSTLGQLLMK 340 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHH
Confidence 56788999999999999999994 5566655555554 458999999999999999998 78899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.++|++|.++|++++...|++.. +..++.++...|+.++|..++++++...
T Consensus 341 ~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 341 HGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999888644 5689999999999999999999998765
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=1.4e-10 Score=84.34 Aligned_cols=119 Identities=15% Similarity=0.096 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
|....+++..+..+...|++++|+..+..++...|+ ++.++...+++++..|+.++|++.+++++..+|+....
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l 376 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD------NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL 376 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence 788899999999999999999999999999999998 78888899999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhh
Q 031170 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRM 150 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 150 (164)
++++|.++.+.|+..+|+..++..+..+|++...+.++...+...
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL 421 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999955455555444443
No 119
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.33 E-value=6.1e-11 Score=80.77 Aligned_cols=105 Identities=18% Similarity=0.096 Sum_probs=94.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|.-++..|+|.+|...|..-++.+|++ +.+++.||.+++.+|+|+.|...|..+++..|+.... ++.++.+|.+
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---pdallKlg~~ 224 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---PDALLKLGVS 224 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---hHHHHHHHHH
Confidence 345778999999999999999999986 7789999999999999999999999999999885543 7899999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCK 109 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 109 (164)
...+|+.++|...|+++++.+|+...+....
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999987765443
No 120
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.33 E-value=9.2e-11 Score=71.66 Aligned_cols=101 Identities=25% Similarity=0.159 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---Cchhh
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN---DFRPY 106 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~ 106 (164)
.+++.+|.++...|+.++|+.+|++++........ ...+++.+|..+...|++++|+..+++++...|+ +....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~---~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD---RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 56788899999999999999999999987654221 2567788999999999999999999999988888 66677
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 107 FCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 107 ~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
..++.++...|+.++|++.+-.++.-.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALAET 105 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 788888889999999999888776533
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.32 E-value=1.5e-11 Score=68.94 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=50.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
|..+|...++|++|++++++++..+|+++.++...|.++..+|++++|+..|+++++..|+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4567788888888888888888888888888888888888888888888888888888886
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.32 E-value=1.6e-11 Score=78.02 Aligned_cols=89 Identities=21% Similarity=0.216 Sum_probs=75.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
+|.+++..|++++|+..|+.++...|+. +.+.+.+|.++...|++++|+..++.. ...+. .+.++..+|+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~------~~~~~~~~Gd 126 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAF------KALAAELLGD 126 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcch------HHHHHHHHHH
Confidence 4678899999999999999999988665 446788999999999999999999763 22222 3667779999
Q ss_pred HHHHccCHHHHHHHHHHHH
Q 031170 78 IKFLQKNVDEALKSYQELE 96 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~ 96 (164)
++...|++++|+..|++++
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999874
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=4.9e-11 Score=83.84 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=86.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+++..+++++.|.+.++.+.+.+.+..-.....+++.+..| ++.+|...|++..+..+. .+..+..+|.++.
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~~~l 212 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHHHHH
Confidence 45667777777777777777776666666666666666655 467777777777666554 4555667777777
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCH-HHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN-AEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~A~~~l~~~~~~~p~~ 136 (164)
.+|+|++|.+.+++++..+|++++.+.+++.+....|+. +.+.+++.+....+|..
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 777777777777777777777777777777777777776 55666777776777766
No 124
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.31 E-value=2.2e-11 Score=90.86 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=116.2
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
.++.++|.+.+...+++++..|..++.+-..|..+.-.|+-++|..+...+++.++. +...|..+|.++-...+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~------S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK------SHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc------cchhHHHHHHHHhhhhh
Confidence 456788888999999999999999998888888888889999999999999988887 67888889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhh
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSR 149 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~ 149 (164)
|++|++||..|+...|++..++.-++.+..++++++-....-.+.+...|.. -..|+..+++.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~--ra~w~~~Avs~ 153 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ--RASWIGFAVAQ 153 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh--HHHHHHHHHHH
Confidence 9999999999999999999988888888888888888888888888888887 44555554443
No 125
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.31 E-value=8.5e-11 Score=88.28 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=121.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
...+++.++|+.+++++++..|+....|..+|+++.++++.+.|...|...++..|. +...|+.++.+-.+.|.
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~------~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN------SIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC------CchHHHHHHHHHHHhcc
Confidence 345789999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..+|...++++.-.+|++...|+....+-...|+.++|...+.++++..|.+
T Consensus 735 ~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 735 LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999998
No 126
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.31 E-value=3.2e-10 Score=70.53 Aligned_cols=106 Identities=23% Similarity=0.294 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch---
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR--- 104 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 104 (164)
.+..++.-|.-.++.|+|++|++.|+.+....|...- ...+.+.++.+|+..+++++|+..+++-++++|.++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y---a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY---AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 4567888999999999999999999999999987443 2678889999999999999999999999999998765
Q ss_pred hhhhHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCc
Q 031170 105 PYFCKGMIYSLLDR---------------NAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 105 ~~~~~~~~~~~~~~---------------~~~A~~~l~~~~~~~p~~ 136 (164)
+++..|.+++.+.. ...|...|.++++..|+.
T Consensus 86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 57888988888776 889999999999999988
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.27 E-value=6.2e-11 Score=89.60 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=117.5
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
...+.++|+++.++++..++++|-.+..|+.+|.+..+.+++..|...|..++..+|+ +..+|..++..|...+
T Consensus 494 ~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLK 567 (777)
T ss_pred ccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHh
Confidence 3456799999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
+-.+|...+.++++.+-.+...|.+...+....|.+++|++.+.+.+.+.-
T Consensus 568 ~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 999999999999999988899999999999999999999999999977653
No 128
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=2.4e-10 Score=88.12 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC 108 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 108 (164)
...++..|+.++..|++++|...+.++|+.+|. ...++..+|.+|..+|+.+++..++-.+..++|++.+.|..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 455778888999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 109 KGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
++....++|++++|+-+|.+|++..|.+++
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 999999999999999999999999999954
No 129
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.5e-10 Score=79.74 Aligned_cols=98 Identities=20% Similarity=0.111 Sum_probs=89.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
||++|+.+|+++.|..-|.+++++.|++++.+..+|.++..+. ...++...|+++++.+|. +..+...+|.
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~------~iral~lLA~ 235 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA------NIRALSLLAF 235 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc------cHHHHHHHHH
Confidence 5889999999999999999999999999999999998766544 335789999999999999 8999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.++.+|+|.+|+..++..++..|.+.+
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999887654
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.25 E-value=4.3e-11 Score=84.13 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=102.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|++.+.+. ++.++......+++..++++.|.+.++.+-+.+.+ ..-..+..+++.+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLA 177 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHH
Confidence 45677889999999888754 67888888889999999999999999999888776 45555566667666
Q ss_pred cc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.| .+.+|..+|+......+.++..+..++.++..+|++++|.+.+.+++..+|.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 66 59999999999888878888888999999999999999999999999999998
No 131
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=8.5e-11 Score=87.61 Aligned_cols=133 Identities=17% Similarity=0.104 Sum_probs=107.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chhh-hhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKLK-EARD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~-~~~~ 70 (164)
+|.+|...|+|++|+..++.++.. .|.-......+|.+|..++++++|+..|++++++.... +... ....
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 467899999999999999999998 55555556679999999999999999999999986421 1111 1356
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPN--------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
++..||.+|...|++++|..+++.++.+... -...+...+.++..++++++|+.++++++++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 6778999999999999999999999876322 22345677888888999999999999998874
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.22 E-value=3.3e-11 Score=66.56 Aligned_cols=64 Identities=27% Similarity=0.288 Sum_probs=38.3
Q ss_pred HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170 40 DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK 109 (164)
Q Consensus 40 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 109 (164)
+..|++++|+..|++++..+|+ +..+++.+|.+++..|++++|...+++++..+|+++..+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3556666666666666666665 556666666666666666666666666666666654444433
No 133
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.22 E-value=1.3e-10 Score=65.15 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=31.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|+..++|++|+++++.++..+|.++..++.+|.++...|++.+|++.|+++++..|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 344455555555555555555555555555555555555555555555555555555544
No 134
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.21 E-value=8.2e-10 Score=68.74 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=87.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|...+..|+|++|++.|+.+....|.. ..+...++.++++.+++++|+..+++-+++.|.... ..-+++..|.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccHHHHHHHHH
Confidence 455678999999999999999999875 567899999999999999999999999999998443 25677889999
Q ss_pred HHHccC---------------HHHHHHHHHHHHHhCCCCch
Q 031170 79 KFLQKN---------------VDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 79 ~~~~~~---------------~~~A~~~~~~~~~~~p~~~~ 104 (164)
++.+.. ...|...|++++...|++.-
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 998877 89999999999999999764
No 135
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=4.2e-10 Score=73.52 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=45.7
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYS 114 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (164)
-|+-++..|+|++|..-|..|+.+.|.-... .....+...|-+.++++.|+.|+....++|.++|.+..++..++.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3444444445555544455554444432110 011122234444444445555555444555544444444444444444
Q ss_pred hcCCHHHHHHHHHHHHhhCCCc
Q 031170 115 LLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 115 ~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+..+++|++-|++++..+|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 4444455555555544444444
No 136
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.20 E-value=8e-10 Score=74.10 Aligned_cols=106 Identities=24% Similarity=0.323 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch---
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR--- 104 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--- 104 (164)
.+..++..|..++..|+|.+|+..|++++...|.... ...+.+.+|.+++..|+++.|+..+++.+...|+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~---a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY---APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 4678899999999999999999999999999987443 2678889999999999999999999999999999764
Q ss_pred hhhhHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCc
Q 031170 105 PYFCKGMIYSLLD-----------RNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 105 ~~~~~~~~~~~~~-----------~~~~A~~~l~~~~~~~p~~ 136 (164)
+++.+|.++.... ...+|+..|+..+...|+.
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 6788888876643 3458999999999999998
No 137
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.2e-10 Score=81.23 Aligned_cols=134 Identities=13% Similarity=0.047 Sum_probs=75.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh---------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK--------------- 66 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------- 66 (164)
|..+...|+.++|+-.|+.++.+.|...+.|.++..+|+..|++.+|...-+.+++..|.+-...
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 44555556666666666666666666666666666666666655555555555444443311000
Q ss_pred ---------------hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 67 ---------------EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 67 ---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
....+...+|.+....|.++.+++.+++.+...|+ ...+..+|.++...+.+++|+++|..+++
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 01223334555555556666666666665555443 23455566666666777777777777777
Q ss_pred hCCCc
Q 031170 132 LSPKK 136 (164)
Q Consensus 132 ~~p~~ 136 (164)
++|++
T Consensus 500 ~dP~~ 504 (564)
T KOG1174|consen 500 QDPKS 504 (564)
T ss_pred cCccc
Confidence 77776
No 138
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.19 E-value=2.5e-09 Score=73.54 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=103.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcC---------------C---cHHHHHHHHHHHhhc
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCG---------------E---GEAVIKRLEEALEIA 59 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~---------------~---~~~A~~~~~~a~~~~ 59 (164)
+|.+++..++|++|+..+++.++.+|++ +.+++.+|.++...+ + ..+|+..|++.++..
T Consensus 75 la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y 154 (243)
T PRK10866 75 LIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY 154 (243)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999887 456888888765544 1 246889999999999
Q ss_pred cccchhhh-----------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhhhHHHHHHhcCCHHHHHHH
Q 031170 60 EDGNKLKE-----------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYFCKGMIYSLLDRNAEAKEE 125 (164)
Q Consensus 60 ~~~~~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~ 125 (164)
|+..-... ...--+.+|..|++.|.|..|+.-++.++...|+. .++++.++..|..+|..++|...
T Consensus 155 P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 155 PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 98653211 12223356889999999999999999999998875 56788999999999999999887
Q ss_pred HHHH
Q 031170 126 FAKY 129 (164)
Q Consensus 126 l~~~ 129 (164)
....
T Consensus 235 ~~~l 238 (243)
T PRK10866 235 AKII 238 (243)
T ss_pred HHHH
Confidence 6544
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=9.4e-10 Score=77.38 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=94.5
Q ss_pred hcCCchHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHc-CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAGN--PLS----FEALFENALLMDRC-GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
...++++|+++|++++... .++ ..++..+|.+|... |++++|+.+|++|+......+...........+|.++
T Consensus 86 k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 86 KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 3448888888888888763 222 34577888888888 8999999999999998766554444466677889999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCc-------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDF-------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
...|+|++|+..|+++....-+.. ..++..+.++...|+...|...+++....+|..
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999998887543321 234556778888899999999999998888765
No 140
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.16 E-value=1.9e-09 Score=65.87 Aligned_cols=94 Identities=24% Similarity=0.240 Sum_probs=80.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|-++-..|+.++|+.+|++++...++. ..++..+|..+...|++++|+..+++++...|+... ...+...++.+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~---~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL---NAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc---cHHHHHHHHHH
Confidence 556788999999999999999976554 557899999999999999999999999998876332 35666778999
Q ss_pred HHHccCHHHHHHHHHHHHHh
Q 031170 79 KFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~ 98 (164)
+...|++++|+..+..++..
T Consensus 85 L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999887753
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=1.4e-10 Score=90.32 Aligned_cols=123 Identities=18% Similarity=0.162 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL 89 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 89 (164)
+.-.|..+|.++..++|++..++-..+..|.+...+++|....-.+-+..|-.. ....|..+|-.|...++...|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~----~k~nW~~rG~yyLea~n~h~aV 582 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA----CKENWVQRGPYYLEAHNLHGAV 582 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH----HHhhhhhccccccCccchhhHH
Confidence 444555555555555555555555555555555555555554433333333211 3445666888888999999999
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|+.++..+|++...|..+|.+|...|++.-|+..|.++..+.|.+
T Consensus 583 ~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 583 CEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 99999999999999999999999999999999999999999999988
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.14 E-value=2.2e-10 Score=65.00 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
|+-..++..+|.++..+|++++|+++|++++++....+...+ ...++..+|.++...|++++|+++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445677899999999999999999999999988433232222 3566778999999999999999999999875
No 143
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.12 E-value=5.3e-09 Score=67.74 Aligned_cols=125 Identities=17% Similarity=0.123 Sum_probs=95.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILA-GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
||..+.+.|++.+|...|++++. ...+++..+..+++..+..+++.+|...+++..+..|... .+...+.+|..+
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~Ll~aR~l 170 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCchHHHHHHH
Confidence 35667788888888888888876 4577888888888888888888888888888888877644 356677788888
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
..+|.+..|...|+.++...|. +.+....+..+..+|+.+++...+..+.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8888888888888888887665 4455566777777887777665554443
No 144
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=8.9e-10 Score=83.88 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=91.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIK--RLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
|.++...|++++|.+.|..++..+|+++.....+|.++.+.|+..-|.. .+..+++++|. +..+|+.+|.++
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~------n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL------NHEAWYYLGEVF 764 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Confidence 5778889999999999999999999999999999999999999988888 99999999999 899999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCch
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
-++|+.++|..||.-++...+.+|.
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999877653
No 145
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.11 E-value=1.6e-09 Score=81.22 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=119.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+..+|+-++|......++..++.+.-.|-.+|.++....+|++|+.+|+.|+..+|+ +..++..++.+..+
T Consensus 48 GL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 48 GLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQ 121 (700)
T ss_pred cchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH
Confidence 556778899999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+++++.....-.+.++..|.....|+..+..+...|++..|...++...+..
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998887665
No 146
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=1.4e-09 Score=82.55 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=109.1
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH----------------------------HHHcCCcHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALL----------------------------MDRCGEGEAVIKRLEE 54 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~----------------------------~~~~~~~~~A~~~~~~ 54 (164)
.||...|+..+|.....+.++ .|.++..|..+|.+ ....++|+++...++.
T Consensus 432 ~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~ 510 (777)
T KOG1128|consen 432 LCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLER 510 (777)
T ss_pred HHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHH
Confidence 467788888899998888888 44454555544443 2345788888888888
Q ss_pred HHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 55 ALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 55 a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
.++++|- ....|+.+|-+..+.++++.|.++|..++...|++.++|.+++..|...|+-.+|...++++++.+-
T Consensus 511 sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 511 SLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 8988887 6889999999999999999999999999999999999999999999999999999999999999986
Q ss_pred Ccchhhh
Q 031170 135 KKFEVEG 141 (164)
Q Consensus 135 ~~~~~~~ 141 (164)
+++.+..
T Consensus 585 ~~w~iWE 591 (777)
T KOG1128|consen 585 QHWQIWE 591 (777)
T ss_pred CCCeeee
Confidence 6655433
No 147
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2.3e-09 Score=70.08 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=92.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
|.-++..|+|++|...|..+|...|..+. .+.+.|.++++++.++.|+..+.++|.+.|. ...++...|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~kAl~RRA 175 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEKALERRA 175 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHHHHHHHH
Confidence 45678999999999999999999997644 4668899999999999999999999999998 778888999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 113 (164)
.+|.++..++.|+.-|.+++..+|....+.-....+-
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 9999999999999999999999998776554444433
No 148
>PRK11906 transcriptional regulator; Provisional
Probab=99.09 E-value=4.6e-09 Score=76.69 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=104.5
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA 88 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 88 (164)
.+-.+|.+..++++..+|+|+.++..+|.+....++++.|...|++|+.++|+ .+.+++..|.+.+..|+.++|
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHH
Confidence 34568899999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhhhHHHH-HHhcCCHHHHHHHHHHHHhh
Q 031170 89 LKSYQELEIEDPNDFRPYFCKGMI-YSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 89 ~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~l~~~~~~ 132 (164)
+..+++++..+|....+-...-++ .+...-.+.|+..|.+-...
T Consensus 392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 392 RICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 999999999999987776665555 55567788999988765443
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.09 E-value=3e-09 Score=83.88 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHH
Q 031170 13 DARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSY 92 (164)
Q Consensus 13 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 92 (164)
.+++++-..+...|++..+++.+|.||-++|++++|...++++++.+|. ++.+...+|..|... +.++|+.++
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~------n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD------NPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4444454444555555555666666666666666666666666666555 445555555555544 555555555
Q ss_pred HHHHH--------------------hCCCCchhhh--------hHH------------HHHHhcCCHHHHHHHHHHHHhh
Q 031170 93 QELEI--------------------EDPNDFRPYF--------CKG------------MIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 93 ~~~~~--------------------~~p~~~~~~~--------~~~------------~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
.+++. .+|.+.+.++ ..+ ..|...+++++++.+|+.++..
T Consensus 173 ~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 173 KKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 55433 3344333311 112 5566678888888888888888
Q ss_pred CCCcch
Q 031170 133 SPKKFE 138 (164)
Q Consensus 133 ~p~~~~ 138 (164)
+|.+..
T Consensus 253 ~~~n~~ 258 (906)
T PRK14720 253 DNKNNK 258 (906)
T ss_pred CCcchh
Confidence 888833
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.09 E-value=1.4e-09 Score=79.08 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=84.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|+++...++-.+|++.+.++++..|.+...+...+..+...++++.|+...++++...|+ ....|..|+.+|.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi 279 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYI 279 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHH
Confidence 4678888899999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred HccCHHHHHHHHHHHHH
Q 031170 81 LQKNVDEALKSYQELEI 97 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~ 97 (164)
..|+++.|+..++.+.-
T Consensus 280 ~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 280 QLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHhcCcC
Confidence 99999999988876543
No 151
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.2e-09 Score=75.91 Aligned_cols=136 Identities=16% Similarity=0.220 Sum_probs=110.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc--------------cccc---
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA--------------EDGN--- 63 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~--- 63 (164)
+|.|++..|+|++|+..|.-+...+.-+.+.+..++.+++-.|.|.+|.....++-+.. ....
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 46789999999999999999988776677889999999999999999988776642211 0000
Q ss_pred ---hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 64 ---KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 64 ---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
......+-.+-+|.+.+..-.|++|+..|.+++..+|+....-..++.+|.++.-++-+-+.+.-.++..|+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 0000123344578888888999999999999999999998888899999999999999999999999999987
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.08 E-value=1.8e-09 Score=76.00 Aligned_cols=132 Identities=18% Similarity=0.154 Sum_probs=99.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNP--LS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
|..|-..|+|++|.+.|.++....- ++ ...+...+.++.+. ++++|+.++++++.+.-..+....-...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567778899999999998866431 22 33456667776666 99999999999999987666555557788899
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 76 AQIKFLQ-KNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 76 a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
|.+|... |++++|+.+|++++...... ...+...+.++...|++++|+..|+++....-
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 9999999 99999999999998864322 23456788999999999999999999987643
No 153
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.7e-09 Score=78.64 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=104.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
+...|+|++|.....+++...|++..+......++++.++|++|+...++-...... ....+..|-|.++++.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-------~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-------NSFFFEKAYCEYRLNK 94 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-------chhhHHHHHHHHHccc
Confidence 557899999999999999999999999999999999999999998555443322221 2333789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~ 139 (164)
.++|+.+++ ..++.+.......|.+++.+|++++|+..|+..++.+.++...
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 999999998 4556667788899999999999999999999998888777443
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=9.4e-09 Score=77.44 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=107.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|+.|-..|++++|+++.+++|...|..++.++..|.++...|++.+|...++.+..+++. +..+....+..++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~------DRyiNsK~aKy~L 273 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA------DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh------hHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999987 5566667888899
Q ss_pred HccCHHHHHHHHHHHHHhCCCCch-------hhh--hHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFR-------PYF--CKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~-------~~~--~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+.|+.++|.+.+..-...+.+... .|+ --|.+|...|++..|+..|..+.+..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999988776554321111 243 35788999999999999999887764
No 155
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.05 E-value=1.3e-09 Score=76.71 Aligned_cols=98 Identities=15% Similarity=0.049 Sum_probs=83.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..|+.+|.|++|+++|.+.+..+|.++-.+.+.+.+|+++.+|..|..-++.++.++.. ...++-..|..-..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHHHHHHHHHH
Confidence 567888889999999999999999988888888888999998998888888888888776 56677778888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
+|...+|.+-++.++.+.|++.+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHH
Confidence 888888988888888888886654
No 156
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.02 E-value=2.9e-09 Score=77.65 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=63.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhh---hHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEAR---DVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
.+|+++.+++++|.+++..|+|++|+..|+++++++|+ .. .+++.+|.+|..+|++++|+.++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd------~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN------PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999998 45 35899999999999999999999999987
No 157
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.9e-08 Score=68.54 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=116.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+.++.-.|+|.-..+.+.++++.+ |.++.....+|.+..+.|+.+.|..+|+..-+....-.......-+....+.+|.
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 456778899999999999999998 6678888999999999999999999999654432211111113455667889999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE 140 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~ 140 (164)
-.+++.+|...|.+++..+|.++.+....+.|+...|+...|+..++.++...|..+...
T Consensus 264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 999999999999999999999999999999999999999999999999999999874433
No 158
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.95 E-value=3e-08 Score=60.66 Aligned_cols=95 Identities=23% Similarity=0.232 Sum_probs=57.9
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
++...|+.+.|++.|.+++...|..+.+|.+.+..+.-+|+.++|++-+++++++..+.... .-.+++..|.+|-.+|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trt--acqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRT--ACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHHHHhC
Confidence 34555666666666666666666666666666666666666666666666666665443211 2334455666666666
Q ss_pred CHHHHHHHHHHHHHhCC
Q 031170 84 NVDEALKSYQELEIEDP 100 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p 100 (164)
+-+.|..-|+.+.....
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 66666666666655533
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=8.4e-09 Score=80.83 Aligned_cols=108 Identities=13% Similarity=0.014 Sum_probs=83.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|-.|.+.+++.+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|. +....+..+.+...
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECD 642 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888888888888888888888888888887 67777788888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
.|+|.+|+..++..+............++.++.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8888888888888877655544444444444444
No 160
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.5e-09 Score=69.31 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=83.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..++..+.|..|+..|.++|.++|..+..+.+.+.|+++..+|+.+..-..++++++|+ ....++.+|.....
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAHYFLGQWLLQ 90 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHHHHHHHHHHh
Confidence 455677788999999999999999999999999999999999999999999999999998 78889999999999
Q ss_pred ccCHHHHHHHHHHHHHh
Q 031170 82 QKNVDEALKSYQELEIE 98 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~ 98 (164)
...|++|+.+++++...
T Consensus 91 s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hccccHHHHHHHHHHHH
Confidence 99999999999998543
No 161
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.93 E-value=8.4e-09 Score=75.28 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh---hhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP---YFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
....+..+|..++..|+|++|+.+|++++..+|++..+ |+++|.+|..+|+.++|+..+.+++...
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999865 9999999999999999999999999974
No 162
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.93 E-value=3.7e-07 Score=62.11 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=106.0
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
......|+|++|++.|+.+...+|.. ..+...++.++.+.+++++|+..+++-+++.|..... .-+.+..|.++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~---dY~~YlkgLs~ 118 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA---DYAYYLKGLSY 118 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---hHHHHHHHHHH
Confidence 44567899999999999999999876 4578889999999999999999999999999984422 44555777776
Q ss_pred HHc--------cCHHHHHHHHHHHHHhCCCCchh-----------------hhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 80 FLQ--------KNVDEALKSYQELEIEDPNDFRP-----------------YFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 80 ~~~--------~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
+.. .-..+|+..|+.++...|++.-+ -...|..|.+.|.+-.|+.-++.++...|
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc
Confidence 643 23557888888999999985422 12457788889999999999999998887
Q ss_pred Ccchh
Q 031170 135 KKFEV 139 (164)
Q Consensus 135 ~~~~~ 139 (164)
+....
T Consensus 199 ~t~~~ 203 (254)
T COG4105 199 DTSAV 203 (254)
T ss_pred cccch
Confidence 76433
No 163
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=7.8e-08 Score=77.81 Aligned_cols=150 Identities=14% Similarity=0.084 Sum_probs=126.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
..+|...+++++|.++|+.+++........|...|..++.+.+-+.|...+++|++.-|... +..+.-..|++-++
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE----HVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhh
Confidence 46788899999999999999999888889999999999999999999999999999988743 45666678999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT 155 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 155 (164)
.||.+.+...|+..+..+|...+.|......-...|+.+-....|++++.+.-.-..++.++..-+...+.-+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999987643322255555544444443333
No 164
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.5e-07 Score=70.33 Aligned_cols=139 Identities=13% Similarity=0.076 Sum_probs=107.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh----------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL---------------- 65 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------- 65 (164)
|.|+++.+..++|+..++ ..++.+..+....|+++.++|+|++|.+.|+.+++.+.+..+.
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 567889999999999998 4556666788888999999999999999999987765432210
Q ss_pred ---------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC-------chhhhhHHHHHHhcCCHHH
Q 031170 66 ---------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIE--------DPND-------FRPYFCKGMIYSLLDRNAE 121 (164)
Q Consensus 66 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~-------~~~~~~~~~~~~~~~~~~~ 121 (164)
.......+..|-++...|+|.+|++.+++++.. +.++ ..+...++.++..+|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 113456677889999999999999999999432 1111 1245688999999999999
Q ss_pred HHHHHHHHHhhCCCcchhhhHh
Q 031170 122 AKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 122 A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
|...|...++..|.|......+
T Consensus 243 a~~iy~~~i~~~~~D~~~~Av~ 264 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLAVA 264 (652)
T ss_pred HHHHHHHHHHhcCCCchHHHHH
Confidence 9999999999999985443333
No 165
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.87 E-value=8.7e-09 Score=72.65 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
+...|+-|+++|+|++|+++|.+++..+|. ++-.+...|..|+++..+..|..-...++.++.....++-.++.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ 173 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 456889999999999999999999999997 57788899999999999999999999999998888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 112 IYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 112 ~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
+-..+|+..+|...++.++.+.|++.
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 99999999999999999999999983
No 166
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.86 E-value=3.7e-07 Score=65.27 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=109.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-----------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK----------------- 64 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------- 64 (164)
++++...|+++.|.....+++...|.++.+......+|+..|+|.+...++.+.-+..--...
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999988886664321110
Q ss_pred -------------------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH----------------------------
Q 031170 65 -------------------LKEARDVRFIMAQIKFLQKNVDEALKSYQELEI---------------------------- 97 (164)
Q Consensus 65 -------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------------------------- 97 (164)
...++.+...++.-+...|+.++|.+..+++++
T Consensus 240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHH
Confidence 001355555667777888888888888777554
Q ss_pred ---hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 98 ---EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 98 ---~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|+++..+..+|.++...+.|.+|..+|+.+++..|..
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 356677888899999999999999999999999999887
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.85 E-value=1.2e-08 Score=73.46 Aligned_cols=133 Identities=14% Similarity=0.018 Sum_probs=106.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
||..|+-.|+|+.|+..-+.-+.+.... -.++.++|+++...|+++.|+++|++.+.+.-.-+.........+-
T Consensus 201 LGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 201 LGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred cCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5677888999999999988776653322 3468899999999999999999999987765544443335677788
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC------CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIED------PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+|+.|....++++||.++++-+.+- .....+.+.+|..+...|..++|+.+..+.++..
T Consensus 281 LgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 281 LGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998865542 2345678999999999999999999988887663
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.82 E-value=4.7e-07 Score=58.92 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=107.3
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE-IAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
.=+++....-..+.+...|.. .-.+.+|+...+.|++.||...|++++. ++.. +...++-+++..+..+++.
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~------d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAH------DAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC------CHHHHHHHHHHHHhhccHH
Confidence 345666666666777777765 4577899999999999999999999988 3444 5778888999999999999
Q ss_pred HHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170 87 EALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
.|...++++.+.+|. .++..+..+.++.-.|++..|...|+.+++..|.. ..+.++..
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e 201 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAE 201 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 999999999998876 56778899999999999999999999999999885 33444443
No 169
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.81 E-value=9.9e-09 Score=58.14 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIE---DPN----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
...++..+|.+|..+|++++|+.+|++++.. .++ -...+..+|.++...|++++|+.++++++++.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999865 222 23457889999999999999999999998763
No 170
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.81 E-value=9e-08 Score=61.71 Aligned_cols=89 Identities=25% Similarity=0.226 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRCG----------EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
|+.|.+.++.....+|.+++.++.=|.++.++. -+++|+.-|++++.++|+ ...++..+|..+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~------~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN------KHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHH
Confidence 688999999999999999998887776665443 345678888899999998 7888888888887
Q ss_pred Hcc-----------CHHHHHHHHHHHHHhCCCCchh
Q 031170 81 LQK-----------NVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 81 ~~~-----------~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
..+ -|++|..+|+++...+|++...
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 654 3888889999999999987653
No 171
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.80 E-value=3.8e-07 Score=74.31 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
.+..+...|.+.|++++|...|++..... ..+...|..+...|.+.|+.++|++.|.+..
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555555555544321 1123445555555555666666666666554
No 172
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.8e-08 Score=67.55 Aligned_cols=95 Identities=15% Similarity=-0.000 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
+..-|..++.-.+|+.|+..|.++|.+.|. ...++...+.++++.++|+.+..-..+++...|+...+++.+|.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 344567788888999999999999999998 67888899999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q 031170 112 IYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 112 ~~~~~~~~~~A~~~l~~~~~~ 132 (164)
...+...+++|+..|.++.++
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999655
No 173
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.79 E-value=1.4e-07 Score=74.27 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred hhhhcCCchHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc---cccch--------------
Q 031170 4 LLSEMGKTQDARNVFEEILAG--NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA---EDGNK-------------- 64 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~-------------- 64 (164)
.|...|+.++|+++|+++... .|+ ...+..+...+...|..++|..+|+...+.. |+...
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 455556666666666665543 232 2334444445555555555555555544321 11000
Q ss_pred -----------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 65 -----------LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 65 -----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
..+....|..+...+...|+++.|...+++++...|.+...+..++.+|...|++++|.+.++.....
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 00023445555566666677777777777777777777777777777777777777777777766544
No 174
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=6.4e-07 Score=61.17 Aligned_cols=122 Identities=18% Similarity=0.121 Sum_probs=93.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|.+..... .+.++.-.-..|+.+..+.+-|...+++..+++.+ ..+..+|..|.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--------~tLtQLA~awv~ 181 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--------ATLTQLAQAWVK 181 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------HHHHHHHHHHHH
Confidence 45678889999998887763 45566666667888888999999999998888764 233334443332
Q ss_pred ----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 ----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+.+..|.-+|+......|..+..+..++.++..+|++++|...++.++..++++
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 3468888888888888777778888888889999999999999999999988887
No 175
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.78 E-value=6.5e-07 Score=72.97 Aligned_cols=121 Identities=12% Similarity=-0.008 Sum_probs=55.9
Q ss_pred hhhcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----ccccchhhhhhhHHHHHHHHH
Q 031170 5 LSEMGKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEI----AEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~la~~~ 79 (164)
|.+.|++++|+.+|+++.... .-+...|..+...+.+.|++++|...+.+.... .|+ ...+..+...|
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-------~vTynaLI~ay 589 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-------HITVGALMKAC 589 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHH
Confidence 344445555555554443321 112334444444444555555555555444331 121 23333444455
Q ss_pred HHccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 80 FLQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
.+.|++++|.+.|+...+.. +.+...|..+...|.+.|++++|+..|......
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 55555555555555555443 223344444555555555555555555555443
No 176
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.77 E-value=3.8e-07 Score=71.86 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=75.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
...|.+.|+.++|..+|+++.+ | +...|..+...|.+.|+.++|+..|++..+..... +...+..+...+..
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-----d~~T~~~ll~a~~~ 438 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-----NHVTFLAVLSACRY 438 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHhc
Confidence 4568889999999999999865 3 55789999999999999999999999988754221 13333444455555
Q ss_pred ccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170 82 QKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFA 127 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~ 127 (164)
.|..++|..+|+...+..+- +...+..+..++.+.|+.++|.+.++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 56666666666555442211 11223333444444444444444433
No 177
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=9.1e-08 Score=63.59 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC 108 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 108 (164)
...++..|..|-..|=++-|.--|.+++.+.|. .+.+...+|..+...|+++.|.+.|..+++.+|...-++++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 345667777777777777888888888888887 67777778877778888888888888888888887777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 109 KGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+|..+..-|++.-|.+-+.+-...+|+|
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 8887777888888888777777777777
No 178
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.74 E-value=4e-07 Score=68.40 Aligned_cols=125 Identities=25% Similarity=0.235 Sum_probs=101.7
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 87 (164)
..+.+.|.+++....+..|+..-..+..|.++...|+.++|++.|++++.....-... ..-....+|.++..+.+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql--~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQL--HHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhH--HHHHHHHHHHHHHHHchHHH
Confidence 4567889999999999999999999999999999999999999999998643321111 34556689999999999999
Q ss_pred HHHHHHHHHHhCCCCch-hhhhHHHHHHhcCCH-------HHHHHHHHHHHhhCC
Q 031170 88 ALKSYQELEIEDPNDFR-PYFCKGMIYSLLDRN-------AEAKEEFAKYRQLSP 134 (164)
Q Consensus 88 A~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~-------~~A~~~l~~~~~~~p 134 (164)
|..++....+.+.-+.. ..+..|.++.+.|+. ++|...+.++-....
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999986443322 246778899999998 889999988866544
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.74 E-value=2.1e-07 Score=70.51 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170 11 TQDARNVFEEILAG--NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA 88 (164)
Q Consensus 11 ~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 88 (164)
...+.+...+++.. +|.++.++..+|..+...|++++|...+++++.+.|+ ..++..+|.++...|++++|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCHHHH
Confidence 34566666666664 7788899999999999999999999999999999986 67899999999999999999
Q ss_pred HHHHHHHHHhCCCCch
Q 031170 89 LKSYQELEIEDPNDFR 104 (164)
Q Consensus 89 ~~~~~~~~~~~p~~~~ 104 (164)
+..|++++.++|.++.
T Consensus 473 ~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 473 ADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHhcCCCCch
Confidence 9999999999999886
No 180
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.7e-07 Score=66.55 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=101.7
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSF-EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
+....+|+.|+..++-....+-... ..-..+|.|++..|+|++|+..|.-+...+.. +...++.+|-+++-.|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~------~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA------PAELGVNLACCKFYLG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC------CcccchhHHHHHHHHH
Confidence 5667899999999998876554333 45667899999999999999999998885544 5788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC---------------------------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 84 NVDEALKSYQELEIEDPN---------------------------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~---------------------------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|.+|.....++.+. |- ..+-.+.++.++...-.+++|+..+++++..+|+.
T Consensus 106 ~Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 999998887775332 21 11223456667777778999999999999999886
Q ss_pred chhhhHhhh
Q 031170 137 FEVEGYLRT 145 (164)
Q Consensus 137 ~~~~~~~~~ 145 (164)
.....++.+
T Consensus 185 ~alNVy~AL 193 (557)
T KOG3785|consen 185 IALNVYMAL 193 (557)
T ss_pred hhhHHHHHH
Confidence 433344433
No 181
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=5.9e-07 Score=62.57 Aligned_cols=125 Identities=18% Similarity=0.063 Sum_probs=88.7
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
++..+|++|++++..-....|.+-..+..+|.||....+|..|.++|++.....|. .....+..++..+..+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~------~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE------LEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH------HHHHHHHHHHHHHHhccc
Confidence 67788999999999999999999999999999999999999999999999999887 444444445555544444
Q ss_pred HHHHHHHHHHHH------------------------------hCC--CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 86 DEALKSYQELEI------------------------------EDP--NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 86 ~~A~~~~~~~~~------------------------------~~p--~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
..|+........ .-| ++.......|.+.++.|++++|+.-|+.++...
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 444443332111 112 334455566777777777777777777777665
Q ss_pred CCc
Q 031170 134 PKK 136 (164)
Q Consensus 134 p~~ 136 (164)
.-+
T Consensus 175 Gyq 177 (459)
T KOG4340|consen 175 GYQ 177 (459)
T ss_pred CCC
Confidence 444
No 182
>PLN03077 Protein ECB2; Provisional
Probab=98.70 E-value=6.2e-07 Score=72.21 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=60.8
Q ss_pred hhhhcCCchHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAG--NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
.|...|+.++|+++|+++... .|+. ..+..+...+.+.|.+++|..+|+...+..+-.. ....+..+..++.+
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P----~~~~y~~lv~~l~r 637 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP----NLKHYACVVDLLGR 637 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHh
Confidence 345556666666666655543 2332 2233333445555555556555555553221100 12333344444555
Q ss_pred ccCHHHHHHH--------------------------------HHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 82 QKNVDEALKS--------------------------------YQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 82 ~~~~~~A~~~--------------------------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
.|++++|.+. .+++++..|++...+..++.+|...|++++|.+..+..
T Consensus 638 ~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 5555555444 44455555555555555555565666666655555544
Q ss_pred H
Q 031170 130 R 130 (164)
Q Consensus 130 ~ 130 (164)
.
T Consensus 718 ~ 718 (857)
T PLN03077 718 R 718 (857)
T ss_pred H
Confidence 3
No 183
>PLN03077 Protein ECB2; Provisional
Probab=98.69 E-value=9.1e-07 Score=71.27 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=96.6
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc--cccchhhhhhhHHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA--EDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~la~~~~ 80 (164)
..|.+.|+.++|...|+.. +.+...|..+...|...|+.++|+..|++..+.. |+ ...+..+-..+.
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-------~~T~~~ll~a~~ 600 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-------EVTFISLLCACS 600 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------cccHHHHHHHHh
Confidence 5688899999999999986 5677899999999999999999999999988754 43 344445556788
Q ss_pred HccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 81 LQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..|.+++|..+|+...+..+- +...+..+..++.+.|+.++|.+.+++. ...|+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 999999999999998854333 2345677888888899999998888775 34444
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.69 E-value=2.1e-06 Score=57.19 Aligned_cols=128 Identities=25% Similarity=0.311 Sum_probs=79.0
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhhccc-cchhhhhhhHHHHHHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENAL-LMDRCGEGEAVIKRLEEALEIAED-GNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~la~~~~~ 81 (164)
.....+++..++..+..++...+.+.......+. ++...|++++|...+.+++...|. .. ........+..+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 179 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE----LAEALLALGALLEA 179 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc----hHHHHHHhhhHHHH
Confidence 3445556666777777776666655444444444 666777777777777776664441 00 23333444444666
Q ss_pred ccCHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 82 QKNVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 66777777777777766666 4666666666666676777777777777766665
No 185
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.4e-06 Score=58.60 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=96.5
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHc-CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEA------LFENALLMDRC-GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
++..++++|+.++++++.+..+-... +..+|.+|..- .++++|+.+|+++-+-........+.....+..|..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 45568888888888888876654433 34678777655 788889999999888766544332233455567777
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCch-------hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFR-------PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE 140 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~ 140 (164)
....++|.+|+..|+++....-++.- -++..|.+++-..+.-.+...+++....+|.....+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 78889999999999998876555432 234556777777888888888888888888864433
No 186
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.68 E-value=6.3e-08 Score=48.56 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG 110 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 110 (164)
++..+|..|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455566666666666666666666666666655555544
No 187
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=1.3e-06 Score=70.73 Aligned_cols=130 Identities=15% Similarity=0.047 Sum_probs=81.0
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSF-----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
.++...|++++|...+++++...|... .+...+|.++...|++++|...+++++......+...........+|.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 455667788888888888776544321 234566777777888888888887777665433222222334456677
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCC--------chhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPND--------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
++...|++++|..++++++...... ...+..+|.++...|++++|...+.+++..
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 7777777777777777766542110 112334566666677777777777776654
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.64 E-value=1.6e-06 Score=61.00 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=101.2
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEA-VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
.+.+..+.|..+|.++.+..+-...+|...|.+....++..+ |..+|+.+++..|. ...+|....+.+...|+
T Consensus 12 ~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 12 RRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-
T ss_pred HHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCc
Confidence 344558899999999997767778899999999888555555 99999999999998 78888888899999999
Q ss_pred HHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 85 VDEALKSYQELEIEDPNDF---RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+.|...|++++..-|... ..|-.....-...|+.+....+.+++....|.+
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999998866655 355556666666899999999999999999886
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.64 E-value=4.9e-06 Score=55.36 Aligned_cols=127 Identities=25% Similarity=0.362 Sum_probs=110.1
Q ss_pred hhhhcCCchHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNP---LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
++...|+++.|...+.+++...| .........+..+...+++++|+..+.+++...+.. .......++..+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHH
Confidence 57789999999999999988777 355666777777889999999999999999998862 1567778999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..+++..|+..+..++...|.....+...+..+...+..+++...+.+++...|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999986677777888777788899999999999999986
No 190
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.63 E-value=3.7e-08 Score=46.48 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHH
Q 031170 18 FEEILAGNPLSFEALFENALLMDRCGEGEAVI 49 (164)
Q Consensus 18 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~ 49 (164)
|+++|+.+|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888889999999999999999999888885
No 191
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.63 E-value=5.1e-08 Score=71.22 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=71.5
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
..+..++|+.|+..|.++|.++|++...+-..+..+++.+++..|+.-+.++++.+|. ...+++..|......+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT------YIKAYVRRGTAVMALG 86 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch------hhheeeeccHHHHhHH
Confidence 3455567777777777777777777777777777777777777777777777777776 5666667777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKG 110 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~ 110 (164)
.+.+|...|++.....|+++.+....-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 777777777777777777766544433
No 192
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.4e-06 Score=62.91 Aligned_cols=123 Identities=14% Similarity=0.080 Sum_probs=103.8
Q ss_pred hcCCchHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 7 EMGKTQDARNVFEEILAGNPLS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
...+.+.+.++|+.++++-|+. ...|...|...+.+.+...|...+..|+-..|. .......-.+-.+.
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL 450 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQL 450 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHH
Confidence 4578999999999999999964 667888899999999999999999999999997 33333444566778
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++++.+...|++-+.-.|.+..+|...|.+-..+|+.+.|..+|.-+++....+
T Consensus 451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 889999999999999999999999998888888999999999998888877655
No 193
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.62 E-value=2.8e-06 Score=52.19 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc----hhhh
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF----RPYF 107 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~ 107 (164)
+...|....+.|+.++|++.|.+++.+.|. .+.++...++.+--+|+.++|+.-++++++..-... .++.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 445678889999999999999999999998 789999999999999999999999999999854433 3578
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|.+|...|+.+.|..-|..+-.+-...
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 89999999999999999999987776554
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.61 E-value=1.2e-07 Score=47.60 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
.++..+|.++...|++++|+..|+++++.+|+ +..++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~------~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD------DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------CHHHHHHhhh
Confidence 56777788888888888888888888888887 6677776664
No 195
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.61 E-value=7.1e-08 Score=70.49 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 113 (164)
.-+.-.+.-+.++.|+..+.++|+++|+ +..++-..+..+++.+++..|+.-+.++++.+|.....++..|.++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 3456778889999999999999999998 7777778899999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170 114 SLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 114 ~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~ 144 (164)
...+++.+|...|+......|++......+.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 9999999999999999999999954444443
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.60 E-value=2.4e-06 Score=58.25 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh--
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP-- 105 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-- 105 (164)
.+..++.-|...++.|+|++|+..|+.+....|...- ...+.+.++..+++.++++.|+...++-+..+|.++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~---~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY---SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 4667899999999999999999999999999887433 26788899999999999999999999999999988764
Q ss_pred -hhhHHHHHHh--------cCCHHHHHHHHHHHHhhCCCc
Q 031170 106 -YFCKGMIYSL--------LDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 106 -~~~~~~~~~~--------~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++..|.+++. ..-..+|+..++..+...|+.
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 6677777766 233567889999999999998
No 197
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.58 E-value=5.7e-06 Score=59.39 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=107.5
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
...|+|.+|+....+.-+-.+...-++..-+..-.+.|+.+.+-.++.++-+..++. ...+...++.+....||+
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-----~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-----TLAVELTRARLLLNRRDY 169 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-----hHHHHHHHHHHHHhCCCc
Confidence 457999999999999877666666667777789999999999999999999985542 366777899999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+.|..-..+++...|.++..+.....+|...|++.+...++.+..+..
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999888876554
No 198
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.2e-06 Score=58.42 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=87.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..|-+.|-+.-|.-.|.+++.+.|+-++++..+|..+...|+|+.|.+.|...++++|. ..-+....|..++=
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~------y~Ya~lNRgi~~YY 145 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYY 145 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc------chHHHhccceeeee
Confidence 445667788889999999999999999999999999999999999999999999999998 66777788888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCch
Q 031170 82 QKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
-|+++-|..-+.+--..+|+++-
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChH
Confidence 99999999999998888999875
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.56 E-value=8.3e-08 Score=69.32 Aligned_cols=132 Identities=17% Similarity=0.069 Sum_probs=90.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCC-------------cHHHH-------HHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGN------PLSFEALFENALLMDRCGE-------------GEAVI-------KRLEE 54 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~~~-------------~~~A~-------~~~~~ 54 (164)
||.++-.+|.|++|+.+..+-+... -....+++++|.+|...|+ .+++. ++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 4566777889999988887766542 2245689999999988773 23344 44444
Q ss_pred HHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170 55 ALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAK 128 (164)
Q Consensus 55 a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~ 128 (164)
-+++....++.....+++-.+|+.|+..|+|+.|+.+-+.-+.+... ...++-++|.++...|+++.|+++|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 44444333333334556667888889999999999888776654322 234567888899999999999999888
Q ss_pred HHhh
Q 031170 129 YRQL 132 (164)
Q Consensus 129 ~~~~ 132 (164)
.+.+
T Consensus 261 tl~L 264 (639)
T KOG1130|consen 261 TLNL 264 (639)
T ss_pred HHHH
Confidence 7654
No 200
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.2e-06 Score=61.01 Aligned_cols=132 Identities=8% Similarity=-0.014 Sum_probs=103.6
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----------------hccccc-
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE----------------IAEDGN- 63 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~- 63 (164)
||.||....+|..|.++|+++-...|......+-.+..+.+.+.+..|+.......+ ...++-
T Consensus 50 LgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~ 129 (459)
T KOG4340|consen 50 LGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLP 129 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCc
Confidence 477899999999999999999999998888777777888888888887766544332 111100
Q ss_pred --------hh-hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 64 --------KL-KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 64 --------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
.+ ..........|-+.++.|+++.|.+-|+.++...--.+..-++++.+++..|+++.|+.+....+..
T Consensus 130 g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 130 GSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred chHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 00 0124555667888999999999999999999998888888899999999999999999888777654
No 201
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.54 E-value=3e-06 Score=66.26 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=101.2
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
...+++.+|.....++++.+|+.+.+....|.+++++|+.++|..+++..-...++ +...+..+-.+|..+|+.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~------D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT------DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC------chHHHHHHHHHHHHHhhh
Confidence 45678999999999999999999999999999999999999999777766555555 456666788999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++|..+|++++..+|+ .+.++.+=.+|.+-+.+.+-...--+..+..|++
T Consensus 94 d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~ 143 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR 143 (932)
T ss_pred hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999 7776666677777666665544444444566665
No 202
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.53 E-value=1.4e-06 Score=56.30 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170 45 GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ----------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYS 114 (164)
Q Consensus 45 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (164)
|+.|.+.++.....+|. +...+...|..+..+ .-+++|+.-|++++.++|+..++++.+|.+|.
T Consensus 7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 67888899999999998 566666666555433 34678899999999999999999999999988
Q ss_pred hcC-----------CHHHHHHHHHHHHhhCCCcc
Q 031170 115 LLD-----------RNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 115 ~~~-----------~~~~A~~~l~~~~~~~p~~~ 137 (164)
..+ .+++|..+|+++...+|.+.
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 733 37889999999999999983
No 203
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.9e-06 Score=58.37 Aligned_cols=108 Identities=18% Similarity=0.199 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc--------cccch----hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIA--------EDGNK----LKEARDVRFIMAQIKFLQKNVDEALKSYQELE 96 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 96 (164)
..++...|+-++..|+|.+|...|..|+..- |.... .......+...++|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4456678889999999999999998887643 22111 11135566788999999999999999999999
Q ss_pred HhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 97 IEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 97 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..+|.+..+++.+|.++...=+.++|.+.|.+++.++|.-
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999999999999999999999975
No 204
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=6.6e-06 Score=57.16 Aligned_cols=146 Identities=21% Similarity=0.163 Sum_probs=102.8
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH--HHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA--QIKF 80 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la--~~~~ 80 (164)
......|++.+|...|..++...|.+.++...++.++...|+.+.|...+...-..... .......+ ..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-------~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-------KAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-------hHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999998877664322222 11111122 2233
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccch
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND 157 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
......+. ..+++.+..+|.+..+.+.++..+...|+.++|.+.|-..++.+-.. ....--...+..+..|+..+
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCC
Confidence 33333322 23455677789999999999999999999999999999999887554 12222223344445555433
No 205
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=7.6e-06 Score=56.04 Aligned_cols=128 Identities=14% Similarity=0.058 Sum_probs=100.4
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
.++.++.+++-|....+++...+-+-.-....-+++-+..| +...|.-+|+..-...|. .+.....++.+..
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~------T~~llnG~Av~~l 218 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP------TPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC------ChHHHccHHHHHH
Confidence 46778888999999999998876543333333334444433 677899999999886555 4777778999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHH-HHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK-EEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~-~~l~~~~~~~p~~ 136 (164)
.+|+|++|...++.++..++++++.+.++..+-...|...++. +.+.+....+|..
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999998888888887765 4666777777876
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.46 E-value=2.2e-05 Score=49.77 Aligned_cols=97 Identities=27% Similarity=0.227 Sum_probs=71.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhccccchhhh----------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE----------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
|......++.+.++..+++++.+......... ...+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 44455667777777778887777643221110 23444567888889999999999999999999
Q ss_pred CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
|.+..++..+..++...|+..+|+..|.+....
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988554
No 207
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.45 E-value=1.6e-07 Score=44.27 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=21.7
Q ss_pred HHHHHHhCCCCchhhhhHHHHHHhcCCHHHHH
Q 031170 92 YQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123 (164)
Q Consensus 92 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~ 123 (164)
|+++|+.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666667777777777777777777666664
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.44 E-value=3.7e-06 Score=59.21 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-QKNVDEALKSYQELEIEDPNDFRPYFC 108 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~ 108 (164)
-+|..+.....+.+..+.|..+|.+|++..+. ...++...|.+.+. .++.+.|.+.|+.+++..|.+...|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC------TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 36777778888888899999999999865544 57788889999666 677777999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 109 KGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
....+...|+.+.+..+|++++..-|.+.
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 99999999999999999999999987774
No 209
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.43 E-value=9.5e-07 Score=41.45 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=13.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 72 RFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
+..+|.+++..|++++|+++|++++..+|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444443
No 210
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.43 E-value=8.3e-07 Score=41.74 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666654
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.40 E-value=1.6e-05 Score=50.49 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=69.1
Q ss_pred hhcCCchHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170 6 SEMGKTQDARNVFEEILAGNPLS----------------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN 63 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 63 (164)
...++.+.++..+++++....++ ..+...++..+...|++++|+..+++++..+|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-- 94 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY-- 94 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--
Confidence 45678999999999999986432 233456777888999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
+..++..+..++...|+...|+..|++...
T Consensus 95 ----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 95 ----DEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -----HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 788999999999999999999999988754
No 212
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=9.6e-06 Score=65.75 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=100.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hhhhhHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KEARDVRF 73 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~ 73 (164)
|.++...|++++|...+++++...... ..++..+|.++...|++++|...+++++......... ......+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 456778999999999999998753321 2356678999999999999999999999875432110 00123345
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC-----CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPN-----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
.+|.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++..+.+
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 7799999999999999999998875332 133445678888899999999999999977643
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.9e-05 Score=53.26 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCc------h
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-KNVDEALKSYQELEIEDPNDF------R 104 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~------~ 104 (164)
+...+.+ ++..++.+|+.++++++++..+.+...--...+..+|.+|... .++++|+.+|+++-.-..... .
T Consensus 77 YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 77 YVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 3333344 4455889999999999999877554333345566899999877 999999999999987654422 2
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 105 PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.++..+..-.+.+++.+|+..|.++....-++
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666667999999999999998776555
No 214
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.38 E-value=9.9e-07 Score=41.48 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
.++..+|.++..+|++++|+.+|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777665
No 215
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.34 E-value=1.8e-06 Score=40.48 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
+.+++.+|.++..+|++++|+..++++++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999999986
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.31 E-value=2e-05 Score=58.46 Aligned_cols=124 Identities=19% Similarity=0.066 Sum_probs=97.1
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-------------------hh
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-------------------KE 67 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------~~ 67 (164)
+..+++.-++.-.++++++|+++++|..++.= ...-..+|..+++++++.....-.. ..
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 45688899999999999999999999988752 2334577888888887765332110 01
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
...+...+|.|..+.|+.++|++.++..++.+|. ...++.++..++...+.+.++...+.+.-++
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1334557899999999999999999999998886 4567889999999999999999999987544
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.8e-05 Score=56.13 Aligned_cols=122 Identities=18% Similarity=0.040 Sum_probs=75.6
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-ccccchhhhhhhHHHHHHHHHHHc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEI-AEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
++...|++.+|....+++++..|.+.-++..--.+++-.|+.+.-...+++.+.. +++.. . ...+.-+++..+...
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-~--~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-C--YSYVHGMYAFGLEEC 188 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-H--HHHHHHHHHhhHHHh
Confidence 4456678888888888888888887666666556666667666666666666655 33310 0 122233556666666
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAK 128 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 128 (164)
|-|++|.+...++++++|.+.=+....+-++...|+++++.+...+
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7777777777777777666555555555555555555555555443
No 218
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=3.2e-05 Score=57.26 Aligned_cols=123 Identities=13% Similarity=0.138 Sum_probs=81.4
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
..++++..|..+|++++..+..+...|...+.+-++......|..++.+|+.+-|. ....|+....+-...|+.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR------VdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR------VDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch------HHHHHHHHHHHHHHhccc
Confidence 45667788888888888888888888888888888888888888888888888877 456666666666667777
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..|...|++-+...|+ ..+|......-...++++.|.++|.+-+-.+|+
T Consensus 158 ~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 7777777777666554 223333333333344444444444444444443
No 219
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.27 E-value=9e-07 Score=62.40 Aligned_cols=90 Identities=19% Similarity=0.077 Sum_probs=71.2
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
....|++++|++.|..+|.++|.....+-..+.++++.+++..|+.-+..++.++|+ ...-+...|.....+|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGN 197 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhc
Confidence 456678888888888888888888888888888888888888888888888888887 55556667777778888
Q ss_pred HHHHHHHHHHHHHhCC
Q 031170 85 VDEALKSYQELEIEDP 100 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p 100 (164)
|++|...+..+.+++-
T Consensus 198 ~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDY 213 (377)
T ss_pred hHHHHHHHHHHHhccc
Confidence 8888888888877643
No 220
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=1.4e-05 Score=52.33 Aligned_cols=120 Identities=19% Similarity=0.153 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170 13 DARNVFEEILAGNPLSFEA---LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL 89 (164)
Q Consensus 13 ~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 89 (164)
+.+...++....+|...-+ -..++..+.+.+++++|+..++.++....+... ..-+...+|.+.+.+|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l---k~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL---KALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH---HHHHHHHHHHHHHHhhhHHHHH
Confidence 6777788888888777554 456889999999999999999999976443211 2445568999999999999999
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+.+...-.. .=.......+|.++...|+.++|+..|.+++...+..
T Consensus 147 ~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 988664332 1112234578999999999999999999999997554
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.24 E-value=5.5e-06 Score=59.21 Aligned_cols=131 Identities=13% Similarity=0.016 Sum_probs=91.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
+.+....++.+++.+-.-.+.....+ ..+...++..+.-.+.++++++.|+++++.....+++.-...+...+|.
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 34444556666666665555543322 2456668888888888888888898888887665544334567778888
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC----C------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPN----D------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~----~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
++....|+++|+.+..++..+... + ..+++.++..+...|+...|.++++++.++.
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 888888999988888888765321 1 2345677888888888888888888886664
No 222
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.8e-05 Score=55.87 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK 109 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 109 (164)
.-+..-|+-|++..+|..|+..|.+.|+..-.+.+. +...+...|-+.+-.|+|..|++-..+++..+|.+..+++.-
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl--navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL--NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 346678889999999999999999999875443333 455566888899999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 110 GMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 110 ~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+.++..+.++++|+.++...+.++...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999888888888776665443
No 223
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=0.0001 Score=48.39 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=73.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
+|..++..+++++|+..++.++..-.+. .-+-..++.+..++|++|+|+..+.....-+- ........|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-------~~~~~elrGD 167 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-------AAIVAELRGD 167 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-------HHHHHHHhhh
Confidence 3667888999999999999998753332 22456899999999999999988776433211 1344557899
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
++..+|+-++|+..|++++...+...
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCChH
Confidence 99999999999999999999874443
No 224
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.5e-05 Score=50.88 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=84.3
Q ss_pred chhhhhcCCchHHHHHHHHHHh--------cCCCCHH----------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170 2 ARLLSEMGKTQDARNVFEEILA--------GNPLSFE----------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGN 63 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~----------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 63 (164)
|.-++..|+|.+|...|..++. ..|..++ .+.+..+|++..|+|-++++.....++..|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~-- 262 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-- 262 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc--
Confidence 4567889999999999998865 3666543 4668889999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
+..+++..|......=+..+|..-|.+++..+|.-..
T Consensus 263 ----nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 263 ----NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred ----hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 7889999999999999999999999999999887544
No 225
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.17 E-value=0.0001 Score=60.71 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CchhhhhH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--DFRPYFCK 109 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~ 109 (164)
+..|.-+|...+++++|.++|+..++.+.. ...+|..+|..++.+++-+.|...+.+|+..-|. +....-.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 444555555566666666666666665553 3556666666666666666666666666665555 34444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 110 GMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 110 ~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+.+.++.|+.+.+...|.-.+.-+|..
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCccc
Confidence 555556666666666666666666555
No 226
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.1e-05 Score=56.88 Aligned_cols=94 Identities=14% Similarity=0.013 Sum_probs=82.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
|.-|+..++|..|+..|.+.|+..-.+++ .|.+.+-+.+..|+|..|+.-..++++.+|. ...+++.-|.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~------h~Ka~~R~Ak 161 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT------HLKAYIRGAK 161 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc------hhhhhhhhhH
Confidence 45688889999999999999998766544 4778999999999999999999999999999 8888999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
|++.+..++.|..+.+..+..+..
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999888766443
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.15 E-value=1.9e-05 Score=56.55 Aligned_cols=133 Identities=15% Similarity=0.036 Sum_probs=104.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hh--hhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KE--ARD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~--~~~ 70 (164)
|+..+..++.++++++.|+.+++...++ .+++..+|.++....++++|..+..++.++..+.+.. .. ...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4677888899999999999999875443 3457789999999999999999999999986543311 11 245
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDP------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+++.++..+-.+|....|.++.+++.++.- -....+..+|.+|...|+.+.|..-|+.+....
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 566788899999999999999988866532 223446678999999999999999999987654
No 228
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=2.3e-05 Score=61.52 Aligned_cols=92 Identities=20% Similarity=0.121 Sum_probs=82.4
Q ss_pred HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
....+++.+|.....+.++..|+ ...+....|.+.+++|..++|..+++..-...+++...+-.+-.+|..+|+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 34668899999999999999998 677888899999999999999988887777777777777788899999999
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 031170 119 NAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 119 ~~~A~~~l~~~~~~~p~~ 136 (164)
.++|+..|++++..+|..
T Consensus 93 ~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSE 110 (932)
T ss_pred hhHHHHHHHHHHhhCCcH
Confidence 999999999999999994
No 229
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.07 E-value=1.9e-06 Score=60.79 Aligned_cols=95 Identities=19% Similarity=0.139 Sum_probs=86.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
+.-.+..|++++|++.+..++.+.|. ....+...+.++++++++..|+.-+..++.++|+....+-..+.....
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 34456778999999999999999998 777888999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q 031170 116 LDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 116 ~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+|+|.+|.+.|..+.+++-+.
T Consensus 195 lg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hhchHHHHHHHHHHHhccccH
Confidence 999999999999998887443
No 230
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.04 E-value=1.3e-05 Score=37.48 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhcc
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAE 60 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 60 (164)
|+.+|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444444444444444444444444433
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.02 E-value=0.00032 Score=51.04 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=87.9
Q ss_pred cCCchHHHHHHHH-HHhcCCCCHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 8 MGKTQDARNVFEE-ILAGNPLSFEALFENALLMDR---------CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 8 ~~~~~~A~~~~~~-~l~~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
.|+.++|++++.. +....+.+++.+...|.+|.. ....++|+..|.++....|+ .-.-..++.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-------~Y~GIN~At 267 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-------YYSGINAAT 267 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-------ccchHHHHH
Confidence 7999999999999 666678889999999987742 23467899999999999875 333445555
Q ss_pred HHHHccCHHHHHHHHHHHH--------Hh-CCCCchhhh---hHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170 78 IKFLQKNVDEALKSYQELE--------IE-DPNDFRPYF---CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~--------~~-~p~~~~~~~---~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
++...|.-.+...-.+++. +. .-.....++ .++.+....|+.++|+..++++++..|..+.....+..
T Consensus 268 LL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 268 LLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred HHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 6666664333322222221 11 111112222 34556666999999999999999999988765554443
No 232
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=98.02 E-value=0.00017 Score=41.88 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170 14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ 93 (164)
Q Consensus 14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 93 (164)
.+..+++.+..+|++.++.+.+|..+...|++++|++.+-.+++.+++.. ...+...+-.++...|.-+.-...|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~----~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE----DDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC----CCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc----ccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 45678888999999999999999999999999999999999999887643 24455555566666666554444444
Q ss_pred H
Q 031170 94 E 94 (164)
Q Consensus 94 ~ 94 (164)
+
T Consensus 83 R 83 (90)
T PF14561_consen 83 R 83 (90)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.00 E-value=1.9e-05 Score=36.90 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
.+++.+|.+|..+|++++|+.+|+++++.+|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478899999999999999999999999988863
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.99 E-value=1.9e-05 Score=36.53 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=13.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
+.+|.++...|++++|+..|++++...|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444444444444444444444444443
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.93 E-value=0.00011 Score=55.57 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=76.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
|+++...|+.++|++.|++++.....-.+ .++.++.++.-+.+|++|..++.++.+.+... ..-+.+..|-
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-----ka~Y~Y~~a~ 348 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-----KAFYAYLAAA 348 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-----HHHHHHHHHH
Confidence 67888999999999999998864444333 46789999999999999999999999987772 2445557899
Q ss_pred HHHHccCH-------HHHHHHHHHHHHhC
Q 031170 78 IKFLQKNV-------DEALKSYQELEIED 99 (164)
Q Consensus 78 ~~~~~~~~-------~~A~~~~~~~~~~~ 99 (164)
++...++. ++|...+.++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999 89999998876553
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00047 Score=47.07 Aligned_cols=126 Identities=18% Similarity=0.124 Sum_probs=89.2
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
..|...++|++|...+.++++-+.++ ..++...+.+..+...+.++..+++++....-..+.+.. ...-+..+
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt-AAmaleKA 117 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT-AAMALEKA 117 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch-HHHHHHHH
Confidence 34566789999999999998655443 334566777888899999999999999998765544422 33333445
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCc------hhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDF------RPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
--.....+.+.|+.+|++++.....+. +.+-..+.++.....+.+|-..+.+-
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 555667799999999999887644432 23445667778888888876666654
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.88 E-value=2.9e-05 Score=35.92 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
++++.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999999986
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00043 Score=49.42 Aligned_cols=123 Identities=15% Similarity=0.031 Sum_probs=96.3
Q ss_pred hhhhhcCCchHHHHHHHHHHhc-CCCCHHH---HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAG-NPLSFEA---LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
..++.+|+.+.-...+++++.. +|+.|-. .-.++-.+.+.|-|++|.+...+++++++. ..-+...++.+
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHV 218 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHV 218 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHH
Confidence 3567889999999999999988 6766433 334566788999999999999999999997 67777789999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC----CchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 79 KFLQKNVDEALKSYQELEIEDPN----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
+...++++++.++..+.-..-.. ....|...+.++.+.+.++.|+++|.+-+-
T Consensus 219 lem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 219 LEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 99999999999998774332211 112355678888889999999999987653
No 239
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.87 E-value=0.00078 Score=51.86 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=102.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcC-CCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc------------hh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGN-PLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN------------KL 65 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~-p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~ 65 (164)
|+.|...|+.+.|..+|+++.+.. +.- ..+|..-|..-+...+++.|+.+++.|........ ..
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 567888899999999999998864 222 55788888888888899999999988877632211 11
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..+..+|...+++....|-++.....|++++.+---.+....+.|..+.....++++...|++.+.+.|-.
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 22456777788888888888888888888888766677777777777777777888888888887776543
No 240
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.84 E-value=0.00031 Score=44.94 Aligned_cols=88 Identities=15% Similarity=0.088 Sum_probs=67.3
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
...++.+++..++..+-.+.|+.+.+-..-|++++..|+|++|+..|+.+....|. .+.+.-.++.|++.+||.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~------~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG------FPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHHcCCh
Confidence 34568888999998888889999999999999999999999999999998777776 566666788888888875
Q ss_pred HHHHHHHHHHHHhCC
Q 031170 86 DEALKSYQELEIEDP 100 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p 100 (164)
.= ..+..+++...+
T Consensus 95 ~W-r~~A~evle~~~ 108 (160)
T PF09613_consen 95 SW-RRYADEVLESGA 108 (160)
T ss_pred HH-HHHHHHHHhcCC
Confidence 41 122345555543
No 241
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.83 E-value=0.00021 Score=53.25 Aligned_cols=130 Identities=11% Similarity=0.036 Sum_probs=105.0
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
..|+.-.|-.-...++...|.+|......+.++...|.|+.+...+.-+-..-.. -..+...+-...+..|.|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s------~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT------TDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC------CchHHHHHHHhhhchhhHH
Confidence 4577777888888999999999999999999999999999998887655444333 2344455567788899999
Q ss_pred HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170 87 EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~ 144 (164)
.|....+-.+...-.+++.....+..-..+|-++++...+++++.++|.. ..++..
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~--~~g~v~ 430 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET--QSGWVN 430 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh--ccccee
Confidence 99999999888777778877777777788999999999999999999876 444443
No 242
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=3.8e-05 Score=57.00 Aligned_cols=114 Identities=10% Similarity=-0.019 Sum_probs=88.6
Q ss_pred chhhhhcCCchHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-ccc--cc------
Q 031170 2 ARLLSEMGKTQDARNVFEEI-LAGNPL--------SFEALFENALLMDRCGEGEAVIKRLEEALEI-AED--GN------ 63 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--~~------ 63 (164)
++.++-.|+|.+|.+.+... +...|. ..-+|.++|.++++.|.|.-+..+|.++++. +.. ++
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34567789999998887643 334444 2234678999999999999999999999961 110 00
Q ss_pred -h--hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 64 -K--LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 64 -~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
. ....-.+.+..|..|...|+.-.|.+||.++...+-.++..|+.++.+..+
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 001356778899999999999999999999999999999999999998877
No 243
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.82 E-value=5e-05 Score=36.11 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=9.8
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q 031170 74 IMAQIKFLQKNVDEALKSYQE 94 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~ 94 (164)
.+|.+|...|+|++|+.+|++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 444444455555555555544
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.79 E-value=4.4e-05 Score=36.32 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhcc
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAE 60 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 60 (164)
++..+|.++...|+|++|+.+|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 477899999999999999999999776544
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.78 E-value=0.00037 Score=45.78 Aligned_cols=103 Identities=16% Similarity=0.057 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCch--
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP--NDFR-- 104 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~-- 104 (164)
-.++..+|..|.+.|+.++|++.|.++.+.....+. ....++.+-.+.+..++|.....+..++-..-. .+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~---~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH---KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 346778999999999999999999998876644333 478888888888899999999998888755432 2222
Q ss_pred --hhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 105 --PYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 105 --~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
.....|..+...+++.+|...|-.+.....
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 234557777778999999988888765554
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.78 E-value=0.0031 Score=46.06 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=92.2
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc---cccchhhhhhhHHHHHHHHHHHcc
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA---EDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
..|..+.|+.+-+++-...|.-+.++...-......|+|+.|+++++...... ++.-+. ...+++.---.-...-
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR--~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER--SRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH--HHHHHHHHHHHHHhcC
Confidence 56778888888888888888888888777777788889999988886655432 211110 1122221111122234
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|...|.....++.++.|+...+-...+..++..|+..++-.+++.+.+..|--
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 67788888888899999988888889999999999999999999999888764
No 247
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.76 E-value=0.00026 Score=53.89 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=48.2
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEA-LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
.|+...|+.++..++...|....+ +..+|++.+..|-.-.|-.++.+++.+..+ .+-..+.+|+.++...+.+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHHHhcchhHHHHhhhH
Confidence 355555555555555555544332 344555555555555555555555555433 3444445555555555555
Q ss_pred HHHHHHHHHHHhCCCCch
Q 031170 87 EALKSYQELEIEDPNDFR 104 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~ 104 (164)
+|++.|+++++.+|+++.
T Consensus 694 ~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHHHHhcCCCChh
Confidence 555555555555555544
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0023 Score=43.87 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=81.0
Q ss_pred hhcCCchHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 6 SEMGKTQDARNVFEEILAGN-----PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
-.+..+.++..+|+++...+ |+-...-...+-=..+.-++++|+++|++++.+....+......+.+-..++++.
T Consensus 82 ke~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 82 KELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 34566777777777777653 2222222233333456667888888888888877665444333455556788899
Q ss_pred HccCHHHHHHHHHHHHHh------CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 81 LQKNVDEALKSYQELEIE------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+.+.+.+|-..+.+-... .+.-...+.....+|...+++..|..+++..-++.
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 999999988877664322 22233344555566666778888888887765443
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.75 E-value=0.0015 Score=48.92 Aligned_cols=102 Identities=11% Similarity=0.096 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCchhhhhH
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE-DPNDFRPYFCK 109 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~ 109 (164)
+...+|.|..+.|+.++|++.++..++..|... ...++..+..++...+.|.++...+.+--+. -|++....+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~----~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD----NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc----hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 345789999999999999999999999887533 4678889999999999999999888875433 25556555555
Q ss_pred HHHHHh-cCC---------------HHHHHHHHHHHHhhCCCc
Q 031170 110 GMIYSL-LDR---------------NAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 110 ~~~~~~-~~~---------------~~~A~~~l~~~~~~~p~~ 136 (164)
+.+-.+ -++ -..|++.+.++++.+|--
T Consensus 337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 554333 111 234788999999999875
No 250
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00021 Score=53.28 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=107.3
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-Hhhccccchh--hhhhhHHHHHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEA-LEIAEDGNKL--KEARDVRFIMAQIKF 80 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~--~~~~~~~~~la~~~~ 80 (164)
.+..+.+...+..-.+.+.....+.+.+....++.+...|++.+|.+.+... +...|..... ...-.+|..+|-+++
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 3455666666777777777777788999999999999999999998877542 2222221100 011234568999999
Q ss_pred HccCHHHHHHHHHHHHHh---------CC---------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170 81 LQKNVDEALKSYQELEIE---------DP---------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~---------~p---------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
..|.|.-+..+|.+++.. .| ++.+++++.|..|...|+.-.|.++|.+++...-.+ .+-|
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--PrlW 372 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--PRLW 372 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--cHHH
Confidence 999999999999999961 11 245678899999999999999999999999888777 6677
Q ss_pred hhhhhhh
Q 031170 143 LRTPLSR 149 (164)
Q Consensus 143 ~~~~~~~ 149 (164)
+++.-++
T Consensus 373 LRlAEcC 379 (696)
T KOG2471|consen 373 LRLAECC 379 (696)
T ss_pred HHHHHHH
Confidence 7775443
No 251
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00088 Score=46.37 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=95.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
|+++.++.||.+.|..+|++.-+. -.+...+..+.+.++.-.+++.+|...+.+++..+|. .+.+...
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~------~~~a~Nn 291 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR------NAVANNN 291 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC------chhhhch
Confidence 467788999999999999955432 2234556778888999999999999999999999998 6777778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHh-cCCHHHHHHHHHHHH-hhCCCcc
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPNDF---RPYFCKGMIYSL-LDRNAEAKEEFAKYR-QLSPKKF 137 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~-~~~~~~A~~~l~~~~-~~~p~~~ 137 (164)
.|.|..=.|+...|++..++++...|... ...+++..+|.. -.+..+-...+..++ ...|+++
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~~~~d~f 359 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQKKQALLEAVAGKEGDSF 359 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhccCCCcc
Confidence 89999999999999999999999998753 233444433322 122233344445554 4456664
No 252
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.71 E-value=0.00065 Score=40.62 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=30.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHH---HHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEA---LFENALLMD 40 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~ 40 (164)
+|+.++..|++-+|+++.++++..++++... +..-|.++.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~ 44 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY 44 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH
Confidence 3677889999999999999999998887643 344455543
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.70 E-value=0.0068 Score=42.80 Aligned_cols=130 Identities=17% Similarity=0.092 Sum_probs=96.0
Q ss_pred hhhcCCchHHHHHHHHHHhcC-CCC-------HHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccc---cchh-----hh
Q 031170 5 LSEMGKTQDARNVFEEILAGN-PLS-------FEALFENALLMDRCG-EGEAVIKRLEEALEIAED---GNKL-----KE 67 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~-------~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~---~~~~-----~~ 67 (164)
-...|+++.|...+.++-... ..+ ...++..|......+ ++++|...++++.+.... .... .-
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999987755 333 335778888888999 999999999999998422 1111 11
Q ss_pred hhhHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 68 ARDVRFIMAQIKFLQKNVD---EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
...++..++.++...+.++ +|....+.+-...|+.+..++..-.+....++.+++.+.+.+.+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3456667899998877655 556666667777888888876666666668888888888888887654
No 254
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.68 E-value=0.0012 Score=44.72 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=61.2
Q ss_pred hcCCchHHHHHHHHHHhc----C-CCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc-------cccchhhhhhhHH
Q 031170 7 EMGKTQDARNVFEEILAG----N-PLS--FEALFENALLMDRCGEGEAVIKRLEEALEIA-------EDGNKLKEARDVR 72 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~----~-p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~ 72 (164)
....+++|++.|.-++-. . +.. +..+..+|++|...|+.+....++++|++.. ...........+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345677888877766542 1 222 4457788999999998665555555555443 2211111135667
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
+.+|.+..+.|++++|+.+|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 78899999999999999999998876
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.68 E-value=0.0029 Score=45.81 Aligned_cols=135 Identities=25% Similarity=0.238 Sum_probs=100.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc--------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNP----LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-------------- 63 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------- 63 (164)
+++....|.++-|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.......
T Consensus 153 a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF02259_consen 153 AKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL 232 (352)
T ss_pred HHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc
Confidence 4567788999999999999988652 2567788889999999999999999998888211111
Q ss_pred --------------hhhhhhhHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-----
Q 031170 64 --------------KLKEARDVRFIMAQIKFLQ------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR----- 118 (164)
Q Consensus 64 --------------~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----- 118 (164)
.......++..+|.-.... ++.+.++..|.+++..+|....+|+..|..+...-+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~ 312 (352)
T PF02259_consen 233 ESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPRE 312 (352)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhc
Confidence 0111345556667766666 888999999999999999999999988887766211
Q ss_pred ------------HHHHHHHHHHHHhhCCCc
Q 031170 119 ------------NAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 119 ------------~~~A~~~l~~~~~~~p~~ 136 (164)
...|+..|-+++...+..
T Consensus 313 ~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 313 KEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 134777777777777763
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.65 E-value=0.0023 Score=46.71 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCCc
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL---QKNVDEALKSYQE-LEIEDPNDF 103 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~-~~~~~p~~~ 103 (164)
++++...+-..|....+|+.-+.+.+..-.. |.-. ......+....|..+.+ .|+.++|+..+.. +....+.++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3455666777888889999888888776554 2211 11146677788888888 9999999999998 445566778
Q ss_pred hhhhhHHHHHHh---------cCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhcccc
Q 031170 104 RPYFCKGMIYSL---------LDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGT 155 (164)
Q Consensus 104 ~~~~~~~~~~~~---------~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 155 (164)
+.+...|.+|-. ....++|+..|.++....|+.+.-.....+.......|..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccc
Confidence 888888888766 2347889999999999998775544444433333333433
No 257
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.64 E-value=0.0022 Score=41.09 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG 110 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 110 (164)
++..+..+-...++.+++...+.-.--+.|. ...+...-|.+++..|+|.+|+..++.+....|..+..--.++
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4566667778888999999999988889998 7888889999999999999999999999988888887777888
Q ss_pred HHHHhcCCH
Q 031170 111 MIYSLLDRN 119 (164)
Q Consensus 111 ~~~~~~~~~ 119 (164)
.|+...|+.
T Consensus 86 ~CL~~~~D~ 94 (160)
T PF09613_consen 86 LCLYALGDP 94 (160)
T ss_pred HHHHHcCCh
Confidence 888888774
No 258
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.62 E-value=0.00057 Score=52.13 Aligned_cols=106 Identities=20% Similarity=0.136 Sum_probs=89.1
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYS 114 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (164)
.|.....+|+...|+.++..|+...|... .-..+.+|++.+.-|-.-.|-.++.+++.+....+-.++.+|.++.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL 687 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH
Confidence 34445678999999999999999888632 3345689999999998999999999999998777777889999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170 115 LLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 115 ~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
.+.+.+.|++.|+.+++++|++.....-+..
T Consensus 688 ~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999999999666555443
No 259
>PRK10941 hypothetical protein; Provisional
Probab=97.62 E-value=0.00091 Score=46.83 Aligned_cols=76 Identities=13% Similarity=-0.053 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
..++-.++.+.++++.|+.+.+..+...|+ .+.-+...|.+|.+.|.+..|..-++.-+...|+++.+......
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 345566788888888888888888888887 56666778888888888888888888888888888776655544
Q ss_pred HH
Q 031170 112 IY 113 (164)
Q Consensus 112 ~~ 113 (164)
+.
T Consensus 258 l~ 259 (269)
T PRK10941 258 IH 259 (269)
T ss_pred HH
Confidence 43
No 260
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.61 E-value=0.0064 Score=43.89 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 16 NVFEEILAGNPLSFEALFENALLMDRCGE------------GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 16 ~~~~~~l~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
.-|++.++.+|++.++|..+....-..-. .+.-+.+|++|++.+|+ +...+..+-.+.....
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~------~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD------SERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhC
Confidence 45788899999999999998876554433 34568889999999997 6677777767777888
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh---cCCHHHHHHHHHHHHhh
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL---LDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~l~~~~~~ 132 (164)
+.++..+-+++++..+|+++..|...-..... .-.+......|.+++..
T Consensus 80 ~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 89999999999999999999888654432222 22455666666666544
No 261
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.53 E-value=0.00095 Score=42.10 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=58.2
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
..++.+++..++..+--+.|+.+++-..-|.+++..|+|++|+..|+......+. .+...-.++.|+..+||.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~------~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA------PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC------chHHHHHHHHHHHhcCChH
Confidence 3667888888888888888888888888888888888888888888888777665 4555567778887777643
No 262
>PRK10941 hypothetical protein; Provisional
Probab=97.47 E-value=0.0028 Score=44.42 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.+....+=.++...++++.|+.+.+.++...|+++.-+.-+|.+|.++|.+..|..-|+..+...|++.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 344456677899999999999999999999999999999999999999999999999999999999983
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.46 E-value=0.0048 Score=47.81 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=92.9
Q ss_pred hcCCchHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAG-----NPLSFEALFENALLMDRCG-----EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
...|.+.|+.+|+.+... .-..+.+.+.+|.+|.+-. ++..|+.++.++..... +.+.+.+|
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--------~~a~~~lg 332 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--------PDAQYLLG 332 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--------chHHHHHH
Confidence 346899999999998771 1125567888999998743 66789999999988753 57888888
Q ss_pred HHHHHcc---CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 031170 77 QIKFLQK---NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 77 ~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~ 133 (164)
.++..-. ++..|..+|..+... .+..+.+.++.+|.. .-+...|+.+++++-...
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8888665 678999999998864 677888888888776 457889999999998877
No 264
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.46 E-value=0.0003 Score=49.63 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=45.5
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
....|+.++|..+|+.+++..|++++++..+|.+....++.-+|-.+|-+++.++|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 345677888888888888888888888888888877777777888888888888887
No 265
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.40 E-value=0.013 Score=41.59 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=89.7
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhh-hhHHHHHHHHHHHc
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEA-RDVRFIMAQIKFLQ 82 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~~~~~ 82 (164)
..+..+|..+|..+ ...+.+.+.+.+|.++.. ..+..+|..+|.++.+.... . ......+|.+|..-
T Consensus 90 ~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~------~a~~~~~~l~~~~~~g 161 (292)
T COG0790 90 SRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV------EAALAMYRLGLAYLSG 161 (292)
T ss_pred cccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHHHcC
Confidence 34678899999944 456788899999998887 55889999999999998654 2 23366777777654
Q ss_pred c-------CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170 83 K-------NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 83 ~-------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p 134 (164)
. +...|+.+|.++.... +..+.+.+|.+|.. ..+..+|+.+|.++-....
T Consensus 162 ~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 162 LQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 1 3347899998887764 77788888988766 4578999999999987765
No 266
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.0034 Score=47.05 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC-HHHHHHHH
Q 031170 14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN-VDEALKSY 92 (164)
Q Consensus 14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~ 92 (164)
-...|+.+....+.|+..|........+.+.+.+-...|.+++...|+ ++..|..-|.-.+..+. .+.|...+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~------~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN------NPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CchhHHhhhhhHHhhccchHHHHHHH
Confidence 356788888888889899888887777777788888899999999998 78888877776666665 88888999
Q ss_pred HHHHHhCCCCchhhh
Q 031170 93 QELEIEDPNDFRPYF 107 (164)
Q Consensus 93 ~~~~~~~p~~~~~~~ 107 (164)
.+++..+|+++..|.
T Consensus 164 lrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 164 LRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHhhcCCCChHHHH
Confidence 999999998887653
No 267
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.40 E-value=0.00042 Score=46.84 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=57.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG 62 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 62 (164)
+.+....++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|..
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 5677889999999999999999999999999999999999999999999999999999874
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.39 E-value=0.00054 Score=30.62 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
..+|.++...++++.|+.+++++++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 334444444444444444444444433
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.35 E-value=0.00036 Score=31.28 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
.++..+|.++...+++++|+..++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46788999999999999999999999988774
No 270
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.34 E-value=0.0077 Score=34.97 Aligned_cols=66 Identities=27% Similarity=0.236 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--chhhhhHHHHHHhcCCH
Q 031170 48 VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND--FRPYFCKGMIYSLLDRN 119 (164)
Q Consensus 48 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~ 119 (164)
.+..+++.+..+|+ +..+.+.+|..+...|++++|++.+..++..++.+ ..+.-.+-.++...|.-
T Consensus 7 ~~~al~~~~a~~P~------D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPD------DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 45567777777777 67777788888888888888888888888776665 33333333444444443
No 271
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.31 E-value=0.0015 Score=33.87 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=10.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
+|..+++.|+|++|..+.+.+++..|++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 3333344444444444444444444433
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.31 E-value=0.0085 Score=39.42 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=55.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..|...|+.++|++.|.++....... .+.++.+..+.+..+++..+..++.++-......++..........-|..
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~ 122 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA 122 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 455667777777777777766654332 33455666666777777777777777666544322222223344455666
Q ss_pred HHHccCHHHHHHHHHHH
Q 031170 79 KFLQKNVDEALKSYQEL 95 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~ 95 (164)
+...++|.+|...|-.+
T Consensus 123 ~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 123 NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHhchHHHHHHHHHcc
Confidence 66677777776666443
No 273
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0052 Score=49.06 Aligned_cols=126 Identities=16% Similarity=0.087 Sum_probs=85.5
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH----------Hhhccccchh----hhhh
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEA----------LEIAEDGNKL----KEAR 69 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------~~~~~~~~~~----~~~~ 69 (164)
.|...|.+++|.++-+.--.++- -..|+..|.-+...++.+.|+++|+++ +.-+|..-+. ....
T Consensus 835 lyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HHHhcccHHHHHHHHhhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 34555556665555443322221 234677777888888888999998873 2223332111 1135
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCCCchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIE---------------------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAK 128 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 128 (164)
..+.+.|......|+.+.|+.+|..+-.. ...+..+-+.+|..|...|+..+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66778899999999999999999886432 234666788899999999999999998887
Q ss_pred HHh
Q 031170 129 YRQ 131 (164)
Q Consensus 129 ~~~ 131 (164)
+..
T Consensus 993 Aqa 995 (1416)
T KOG3617|consen 993 AQA 995 (1416)
T ss_pred HHH
Confidence 643
No 274
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.30 E-value=0.0064 Score=36.44 Aligned_cols=95 Identities=7% Similarity=0.013 Sum_probs=68.7
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCc
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-----------NVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~ 103 (164)
++.-++..|++-+|+.+.+..+...++.... ...+..-|.++..+. -.-.++++|.++....|...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 4667889999999999999999988763321 244556677765443 23467889999999999887
Q ss_pred hhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 104 RPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
..++.+|.-+--...+++++.-.++++..
T Consensus 79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 79 HSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77777776554455567777777777655
No 275
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.30 E-value=0.0063 Score=47.14 Aligned_cols=129 Identities=11% Similarity=0.118 Sum_probs=98.3
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH---HHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF---IMAQIKF 80 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~la~~~~ 80 (164)
.....|=++....+|++++.+.--.|+...+.|..+.+..-++++.+.|++.+.+++... ...+|. .....-+
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~----v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN----VYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc----HHHHHHHHHHHHHHHh
Confidence 345667888899999999999888999999999999999999999999999999987633 233343 2233334
Q ss_pred HccCHHHHHHHHHHHHHhCCCCc--hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDF--RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.--..+.|...|+++++..|... ..++..+..-..-|-...|++.|+++....+..
T Consensus 562 gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a 619 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA 619 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence 44578999999999999887432 234555666666788889999999987665544
No 276
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.30 E-value=0.0011 Score=46.87 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=61.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
.+.-....|+.++|..+|+.++.+.|. ++.++..+|......++.-+|-.||-+++..+|.+.+++.++..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344456789999999999999999999 88999999999998999999999999999999998887766544
No 277
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.021 Score=39.65 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=83.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
+......+.|+++.+.+|..+|.+-.+|.-.=.++..++ +..+-+.++...+.-+|. +..+|...-.+....|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK------NYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK------NYQVWHHRRVIVELLG 126 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc------chhHHHHHHHHHHHhc
Confidence 344556677888888888888888777765555554444 446677888888888887 5666666666666666
Q ss_pred CHH-HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 84 NVD-EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 84 ~~~-~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
++. .-+.+...++..+.++..+|-.+-++....+.++.-+.+..+.+..+
T Consensus 127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 666 66677777777777777777666666666666666666666555544
No 278
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.27 E-value=0.0027 Score=37.15 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=41.4
Q ss_pred hhcCCchHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170 6 SEMGKTQDARNVFEEILAGNPLS---------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN 63 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 63 (164)
...|+|.+|++.+.+..+..... ..+...+|.++...|++++|+..+++++++....+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 56788888877777776653221 24566777888888888888888888888766543
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0071 Score=45.45 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=68.9
Q ss_pred HHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-HHHHHHHHH
Q 031170 49 IKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR-NAEAKEEFA 127 (164)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~l~ 127 (164)
...|+.+....+. +...|........+.+.+.+--+.|.+++..+|++++.|..-+.-.+..+. .+.|...+.
T Consensus 91 v~lyr~at~rf~~------D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 91 VFLYRRATNRFNG------DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHhcCC------CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 4567788887776 466777655555566669999999999999999999999999987777555 899999999
Q ss_pred HHHhhCCCcch
Q 031170 128 KYRQLSPKKFE 138 (164)
Q Consensus 128 ~~~~~~p~~~~ 138 (164)
++++.+|+...
T Consensus 165 rgLR~npdsp~ 175 (568)
T KOG2396|consen 165 RGLRFNPDSPK 175 (568)
T ss_pred HHhhcCCCChH
Confidence 99999999843
No 280
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.22 E-value=0.0036 Score=42.46 Aligned_cols=96 Identities=18% Similarity=0.084 Sum_probs=67.3
Q ss_pred HcCCcHHHHHHHHHHHhhccccc-hhhhhhhHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------Cchhh
Q 031170 41 RCGEGEAVIKRLEEALEIAEDGN-KLKEARDVRFIMAQIKFLQKNVD-------EALKSYQELEIEDPN------DFRPY 106 (164)
Q Consensus 41 ~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~-------~A~~~~~~~~~~~p~------~~~~~ 106 (164)
....+++|+..|.-|+-...-.+ .....+..++.+|++|-.+|+-+ .|+..|.++...... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 44567888888877776543222 11124667778999999999855 455555555544322 23567
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 107 FCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 107 ~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+.+|.+..+.|++++|+.+|.+++......
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 889999999999999999999998776444
No 281
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.22 E-value=0.0044 Score=36.28 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHcCCcHHHHHHHHHHHhhccccchhh---hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 38 LMDRCGEGEAVIKRLEEALEIAEDGNKLK---EARDVRFIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
.....|+|.+|++.+.+..+......... ....+.+.+|.++...|++++|+..+++++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44678899999888888888765543322 224456677888888888888888888887763
No 282
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.033 Score=40.28 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH-H--HHccCHHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI-K--FLQKNVDE 87 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~ 87 (164)
.+.-+.+|+++++.+|++...+..+-.+..+..+.++...-+++++...|+ ....|...-.. . +..-.+..
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~------~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG------SPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHhccCcHHH
Confidence 456788999999999999999998888888888888889999999999987 45555532211 1 12235667
Q ss_pred HHHHHHHHHHhCCC---C---------------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 88 ALKSYQELEIEDPN---D---------------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 88 A~~~~~~~~~~~p~---~---------------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
....|.+++..-.. . ...++.++....+.|..+.|+..++..+..+
T Consensus 121 ~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 121 VRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 77777777653211 0 1123455666677999999999999999885
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.20 E-value=0.0032 Score=32.60 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
+.++.+|..+.+.|+|++|..+.+.+++..|+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 34677788888888888888888888888888
No 284
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.19 E-value=0.024 Score=42.33 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=85.4
Q ss_pred hhhhhcCC-chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhhcc---ccch---hhhhhhHHH
Q 031170 3 RLLSEMGK-TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIK--RLEEALEIAE---DGNK---LKEARDVRF 73 (164)
Q Consensus 3 ~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~a~~~~~---~~~~---~~~~~~~~~ 73 (164)
.-+.+.|. -++|++.++.+++..|.+..... .. ..+-...|.+|+. .+.+.+++.. +.+- .........
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v-~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian 464 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IV-FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIAN 464 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Confidence 34556665 78999999999999888875433 22 2233334555543 2444444321 0000 000122222
Q ss_pred --HHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 74 --IMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 74 --~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.=|...+.+|+|.++..+-.=+.+..| ++.++..+|.++....++.+|..++... .|++
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~ 525 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNE 525 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCch
Confidence 335667899999999988888888889 8999999999999999999999998765 5544
No 285
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.17 E-value=0.012 Score=35.84 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=52.0
Q ss_pred hhhcCCchHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh----
Q 031170 5 LSEMGKTQDARNVFEEILAGNPL------------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA---- 68 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---- 68 (164)
....|-|++|...++++....-. +...+-.++..+...|+|++++....+++..+...+.+...
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 34557778888888777764321 12334566677778888888877777777765443332211
Q ss_pred -hhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 69 -RDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 69 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
..+.+..|..+...|..++|+..|+.+.+
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 12222445555666666666666666543
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.17 E-value=0.013 Score=37.09 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
+......-...++.+++...+.-.--+.|+ ...+...-|.++...|+|.+|+..++.+....+..+..--.++.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 344445556688999999999888888998 67888889999999999999999999998887777766667888
Q ss_pred HHHhcCCH
Q 031170 112 IYSLLDRN 119 (164)
Q Consensus 112 ~~~~~~~~ 119 (164)
|+..+|+.
T Consensus 87 CL~al~Dp 94 (153)
T TIGR02561 87 CLNAKGDA 94 (153)
T ss_pred HHHhcCCh
Confidence 88887764
No 287
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.17 E-value=0.023 Score=35.44 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCc---HHHHHHHHHHHh-hccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 30 EALFENALLMDRCGEG---EAVIKRLEEALE-IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~---~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
+..+.+++++....+. .+.+.+++..++ -.|. . .....+.+|..+++.++|++++.+....++..|++..+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~-~----rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE-R----RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc-c----chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3445555555544433 234555555554 2222 1 23444455555555555555555555555555555443
No 288
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0089 Score=46.32 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 113 (164)
+-|.-+++..+|..+++.|...++-.|.+............++-||....+.++|.++++.+-+.+|.++-..+......
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34556677888888888888888877765544445666667888888888888888888888888888877766777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC
Q 031170 114 SLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 114 ~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..-|+.++|+..+.+......+
T Consensus 439 ~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHhcchHHHHHHHHHHHhhhcc
Confidence 7778888888887777665433
No 289
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.15 E-value=0.00098 Score=45.13 Aligned_cols=60 Identities=25% Similarity=0.358 Sum_probs=37.6
Q ss_pred HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
...+.++.+.|.+.+.+++...|. -...|+.+|....+.|+++.|.+.|+++++.+|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344556666666666666666666 555666666666666666666666666666666554
No 290
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.14 E-value=0.036 Score=40.80 Aligned_cols=119 Identities=18% Similarity=0.087 Sum_probs=77.2
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHH
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEA 88 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 88 (164)
.+...|.+.-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|. +.++. ..++.+.||....
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-------P~ia~--lY~~ar~gdta~d 313 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-------PDIAL--LYVRARSGDTALD 313 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-------hHHHH--HHHHhcCCCcHHH
Confidence 35667888888888888888888888888888888888888888888888876 32222 1223334443332
Q ss_pred -HHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 89 -LKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 89 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++-..+...+.|++.+..+..+..-...|++..|..--+.+....|..
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre 362 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE 362 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh
Confidence 233333444556666666666666666666666666666666665554
No 291
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.10 E-value=0.014 Score=47.77 Aligned_cols=127 Identities=13% Similarity=-0.051 Sum_probs=90.7
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---CcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRC----G---EGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
++...+.|+.|+..|++.-...|+.. ++.+.+|....++ | .+++|+..|++.-.. |. -+--++
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~ 556 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VG------APLEYL 556 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CC------CchHHH
Confidence 45667889999999999999998764 4667777665533 2 356666666665432 22 244456
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh-----cCCHHHHHHHHHHHHhhCCCcc
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL-----LDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-----~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
..|.+|..+|++++-+++|.-+++..|+++..-...-.+..+ -.+...|....--++...|...
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 778899999999999999999999999998765444333333 2334567777777888888873
No 292
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.08 E-value=0.039 Score=41.30 Aligned_cols=125 Identities=15% Similarity=0.075 Sum_probs=88.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEA-----LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
|-++..++++.+|...|.++.+...+.+.. +.++..-.+-+++.+.-...+-..-+..|. +.-..+..|
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~------s~~l~LF~~ 86 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK------SAYLPLFKA 86 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC------chHHHHHHH
Confidence 456788999999999999999887666443 333333334455666666666666666666 566777889
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCchhh---------------hhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDFRPY---------------FCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---------------~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
...++++++.+|+..+...-..-......| ...+.++...|++.+++..+++.+..
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999998876554422222111 13466777899999999999988754
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.08 E-value=0.028 Score=40.73 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C---
Q 031170 27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-D--- 102 (164)
Q Consensus 27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~--- 102 (164)
.....|..++.+..+.|+++-|...+.++....+..... .+.+.+..+.+....|+..+|+..++..+..... .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445678899999999999999999999998876432221 3667788899999999999999999888872111 0
Q ss_pred ------------------------------chhhhhHHHHHHhc------CCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170 103 ------------------------------FRPYFCKGMIYSLL------DRNAEAKEEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 103 ------------------------------~~~~~~~~~~~~~~------~~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
..+++.+|...... +..++++..|..++...|... +.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--k~~~~~ 298 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE--KAWHSW 298 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH--HHHHHH
Confidence 12344555555556 888899999999999999883 344444
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.07 E-value=0.057 Score=38.26 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=87.5
Q ss_pred cCCchHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLS-FEALFENALLMDRCG-------EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
..+..+|..+|+++....-.. ..+.+.++.++..-. +...|...+.++.... ...+...+|.+|
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y 197 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMY 197 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHH
Confidence 348999999999998864322 234888888877641 2237888888888876 257778888888
Q ss_pred HH----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC---------------CHHHHHHHHHHHHhhCCCc
Q 031170 80 FL----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD---------------RNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 80 ~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---------------~~~~A~~~l~~~~~~~p~~ 136 (164)
.. ..++.+|..+|.++..... ....+.++ ++...| +...|...+..+....+..
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 54 4589999999999998755 77788888 666555 7777888888876666554
No 295
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.0055 Score=46.47 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=76.5
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc---HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG---EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
.+....|+..|.+++...|.....+.+.+.++.+.+-. -.|+.-...+++++|. ...+++.|+.++...+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s------~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS------IQKAHFRLARALNELTR 460 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH------HHHHHHHHHHHHHHHhh
Confidence 44677899999999999999999999888888876533 3567777888999988 78899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCch
Q 031170 85 VDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~ 104 (164)
+.+|+.+...+...+|.+..
T Consensus 461 ~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHhhhhHHHHhhcCchhhh
Confidence 99999999888888886554
No 296
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.01 E-value=0.019 Score=35.00 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=69.8
Q ss_pred HHHHHH--HHHHHcCCcHHHHHHHHHHHhhccccchh----h--hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 031170 31 ALFENA--LLMDRCGEGEAVIKRLEEALEIAEDGNKL----K--EARDVRFIMAQIKFLQKNVDEALKSYQELEIE---- 98 (164)
Q Consensus 31 ~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 98 (164)
+|..++ .-.++-|.|++|...+.++.+....-..- + -+.-.+..|+..+..+|+|++++.-...++.-
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 444444 34567789999999999999876432211 1 12344557888899999999888777777654
Q ss_pred ---CCC----CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 99 ---DPN----DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 99 ---~p~----~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
+.+ ...+.+..+..+...|+.++|+..|+.+-.+
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 222 2344567888888899999999999988654
No 297
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.01 E-value=0.018 Score=35.87 Aligned_cols=73 Identities=11% Similarity=0.101 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHc---cCHHHHHHHHHHHHH-hCCCC-chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170 69 RDVRFIMAQIKFLQ---KNVDEALKSYQELEI-EDPND-FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG 141 (164)
Q Consensus 69 ~~~~~~la~~~~~~---~~~~~A~~~~~~~~~-~~p~~-~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~ 141 (164)
....+.+|+++... .|..+.+.+++.+++ ..|.. .+-++.++.-+.+.+++++++.+++..++..|++.+...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 56667777777654 467789999999997 55543 456788999999999999999999999999999955433
No 298
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.00 E-value=0.043 Score=40.33 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=98.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc--------------CC------------CC---HHHHHHHHHHHHHcCCcHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG--------------NP------------LS---FEALFENALLMDRCGEGEAVIKR 51 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~--------------~p------------~~---~~~~~~la~~~~~~~~~~~A~~~ 51 (164)
++.++..+|+++.|.+..++++=. ++ .| ..+++.....+.+.|-+..|.++
T Consensus 46 ls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~ 125 (360)
T PF04910_consen 46 LSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEW 125 (360)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 356788899999999999988532 11 12 22355666788999999999999
Q ss_pred HHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CchhhhhHHHHHHhcCCH-------
Q 031170 52 LEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-----DFRPYFCKGMIYSLLDRN------- 119 (164)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~------- 119 (164)
.+-.+.++|..+ ...+.+.+=....+.++|+=-+..++........ -+..-+..+.++...++.
T Consensus 126 ~KlLlsLdp~~D----P~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~ 201 (360)
T PF04910_consen 126 CKLLLSLDPDED----PLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSA 201 (360)
T ss_pred HHHHHhcCCCCC----cchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccccc
Confidence 999999999843 3455556666667788888778877775552111 234556778888888887
Q ss_pred --------HHHHHHHHHHHhhCCCc
Q 031170 120 --------AEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 120 --------~~A~~~l~~~~~~~p~~ 136 (164)
+.|...+.+|+...|.-
T Consensus 202 ~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 202 QSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccccccchhHHHHHHHHHHHHhHHH
Confidence 89999999999999875
No 299
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.0083 Score=46.49 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=77.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
|.-+++..+|..+++.|...+...|.+ ......++.||....+.|.|.+++++|-+.+|. .+-....+
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~------~~l~q~~~ 434 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ------SPLCQLLM 434 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc------cHHHHHHH
Confidence 345678889999999999999988875 335667889999999999999999999999988 56667778
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..+....+..++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888999999999998776544
No 300
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.95 E-value=0.028 Score=42.85 Aligned_cols=81 Identities=9% Similarity=0.096 Sum_probs=69.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 19 EEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 19 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
++-|+.+|.|.+.|+.+..-+..+ .++++...+++.+...|. .+++|.......+..++|+.-.+.|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~------s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS------SPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 678899999999999998766555 899999999999999999 8999999999999999999999999999876
Q ss_pred CCCCchhhh
Q 031170 99 DPNDFRPYF 107 (164)
Q Consensus 99 ~p~~~~~~~ 107 (164)
.-+.+.|-
T Consensus 83 -vLnlDLW~ 90 (656)
T KOG1914|consen 83 -VLNLDLWK 90 (656)
T ss_pred -HhhHhHHH
Confidence 33355553
No 301
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.013 Score=41.20 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=80.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENA--LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
+|+++...|+++.|...+..+=...... ...-..+ .++.+.....+. ..+++.+..+|+ +..+.+.+|..
T Consensus 174 la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPd------d~~aa~~lA~~ 245 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAATPEI-QDLQRRLAADPD------DVEAALALADQ 245 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCC------CHHHHHHHHHH
Confidence 4778999999999998887653332222 2222122 333444433333 345667788898 78899999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHH
Q 031170 79 KFLQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAK 128 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~ 128 (164)
+...|+.+.|.+.+-..++.+-. +..+.-.+-.++...|..+.....+++
T Consensus 246 ~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 246 LHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999988654 455555666666666655554444443
No 302
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.89 E-value=0.067 Score=41.18 Aligned_cols=114 Identities=19% Similarity=0.100 Sum_probs=100.1
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+..-.. .+..++.-+..-...|++
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~-----~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK-----TPIIHLLEARFEESNGNF 382 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC-----CcHHHHHHHHHHHhhccH
Confidence 567999999999999999999999999999999999999999999999999876542 366777778888889999
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHH
Q 031170 86 DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 124 (164)
..|...++.+....|+...+-+....+....|+.+.+..
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 999999999999889998888888888888899888874
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.86 E-value=0.0039 Score=30.12 Aligned_cols=31 Identities=42% Similarity=0.354 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhcc
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAE 60 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 60 (164)
.++..+|.++..+|++++|+.++++++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3566777777777777777777777776643
No 304
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.80 E-value=0.0098 Score=43.95 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=74.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhccccch-----------hhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEIAEDGNK-----------LKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
|..++++++|..|..-|..++++..+... ... ...+...+..||+..++.+-|+....+.|..+|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 34567788888888888888777643211 100 123444789999999999999999999999999999
Q ss_pred hhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 104 RPYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
..++..+.+...+.+|.+|-+...-+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877666553
No 305
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.79 E-value=0.1 Score=41.19 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=85.9
Q ss_pred chhhh-hcCCchHHHHHHHHHHhcC--CCCHH----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 2 ARLLS-EMGKTQDARNVFEEILAGN--PLSFE----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 2 a~~~~-~~~~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
|.+++ .+.+++.|..++++++... ++..+ +.+.++.++.+.+... |...+++.++.....+...-.....+.
T Consensus 66 a~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll 144 (608)
T PF10345_consen 66 ASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLL 144 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 44444 7899999999999998876 44333 3456788999888777 999999999976552221001111122
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--CCCchh----hhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIED--PNDFRP----YFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~----~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
........+|+..|+..++...... +.++.. .+..+.++...+..+.+++.++++..
T Consensus 145 ~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 145 KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 2334444489999999999987764 233332 23446666667878888888887743
No 306
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.077 Score=40.13 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=84.6
Q ss_pred chhhhhcC--CchHHHHHHHHHHhcCCCC-HH--HHHHHHH-HHHHcCCcHHHHHHHHHHHhhccccchh-hhhhhHHHH
Q 031170 2 ARLLSEMG--KTQDARNVFEEILAGNPLS-FE--ALFENAL-LMDRCGEGEAVIKRLEEALEIAEDGNKL-KEARDVRFI 74 (164)
Q Consensus 2 a~~~~~~~--~~~~A~~~~~~~l~~~p~~-~~--~~~~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~ 74 (164)
|..+...| +...++.+++......|.+ .+ ....+|. ++.-..+.+.|...++++..+...-+.- .....+.-.
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 34445555 6678888888888877654 22 3445564 5556778888999999988875432211 112344556
Q ss_pred HHHHHHHcc-CHHHHHHHHHHHHHhCCCCc----hhhhhHHHHHHhcCCHHHHHHHHH
Q 031170 75 MAQIKFLQK-NVDEALKSYQELEIEDPNDF----RPYFCKGMIYSLLDRNAEAKEEFA 127 (164)
Q Consensus 75 la~~~~~~~-~~~~A~~~~~~~~~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~l~ 127 (164)
++.+|.... .+..+...+.++++.....+ ...+.++.++.-..++..|.+.+.
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 788888777 78888888888888755543 334677777777888888887743
No 307
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.63 E-value=0.17 Score=37.26 Aligned_cols=112 Identities=17% Similarity=0.016 Sum_probs=80.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcc--------------ccchh------hh---hhhHHHHHH
Q 031170 20 EILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE--------------DGNKL------KE---ARDVRFIMA 76 (164)
Q Consensus 20 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~------~~---~~~~~~~la 76 (164)
..+..+|...+.+..++.++..+|++..|.+++++|+-... ..+.. .. ...+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 34567899999999999999999999999999999865432 11100 01 223344556
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-Cchh-hhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPN-DFRP-YFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~-~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
....+.|-+..|.++.+-.+..+|. |+-. ++.+-....+.++++--+..++....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 7788999999999999999999998 6544 34444445557777777777776544
No 308
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.05 Score=41.08 Aligned_cols=127 Identities=12% Similarity=0.011 Sum_probs=81.2
Q ss_pred hhhhcCCchHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAG---NPL-------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
+-...|++.+|++....+..- .|. .+..++.+|....-.+.++.|...|..+.+.-....- -.....
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl---~a~~nl 408 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL---QAFCNL 408 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH---HHHHHH
Confidence 345678888888877776553 344 3556777887777888888888888888886543110 133444
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC-------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPND-------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.+|.+|...++-+.--+..+.+-..+... ..+++..|...+..+++.||...+.+.++..
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 67888888776654444443322221111 1235556666667888888888888888776
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.013 Score=46.90 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
+..+.+.+|+.|...|++.+|+.+|.++
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3567778888888888888888888664
No 310
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.072 Score=37.15 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=86.4
Q ss_pred HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170 39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117 (164)
Q Consensus 39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 117 (164)
+.+.++-.-|+.+.+.++.++|. +..+|...-.+.-. ..+..+-++++..++..+|++...|..+-.+....|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpA------nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPA------NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 34445556788888899999998 56666655444443 346778899999999999999999999999889999
Q ss_pred CHH-HHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccch
Q 031170 118 RNA-EAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTND 157 (164)
Q Consensus 118 ~~~-~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 157 (164)
+.. .-++....++..+.+++-...+-.=++..++.|....
T Consensus 127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 988 8899999999999999666655554555556555433
No 311
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.60 E-value=0.031 Score=38.84 Aligned_cols=87 Identities=16% Similarity=0.017 Sum_probs=63.5
Q ss_pred CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----chhhhhHHHHHHhcC
Q 031170 44 EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN--D----FRPYFCKGMIYSLLD 117 (164)
Q Consensus 44 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~~~~~~~~~~ 117 (164)
.....++++.+|+......+..+....+...+|.-|+..|+|++|+++|+.+...... . ...+..+..|....|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3446788899999887765544444566668999999999999999999999765332 1 233455667778889
Q ss_pred CHHHHHHHHHHHH
Q 031170 118 RNAEAKEEFAKYR 130 (164)
Q Consensus 118 ~~~~A~~~l~~~~ 130 (164)
+.+..+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 8888877765543
No 312
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.60 E-value=0.26 Score=38.96 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhcCCCC----HHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 12 QDARNVFEEILAGNPLS----FEALFENALLMD-RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~----~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
..|+.+++-+++..+=. ..+.+.+|.+++ ++.+++.|..++++++.+.....-..........++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34677777777432222 345778888776 8999999999999999987653322223455567899999888877
Q ss_pred HHHHHHHHHHHhCCCCch-hh---hhH--HHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 87 EALKSYQELEIEDPNDFR-PY---FCK--GMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~-~~---~~~--~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
|....++.+........ .| +.+ .......+++..|++.++......
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 99999999887555221 11 111 223323479999999999998776
No 313
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.12 Score=39.92 Aligned_cols=118 Identities=20% Similarity=0.088 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHH
Q 031170 13 DARNVFEEILAGNPLSFEALFE--NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALK 90 (164)
Q Consensus 13 ~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 90 (164)
-++..+...+..+|.++..+.. +...+...+....+.-.+..++..+|. ...+...+|......|....+..
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE------NCPAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc------cchHHHHHHHHHHHhhhHHHHHH
Confidence 3666666677778888777543 466777788887888888888988888 66677777766666666666655
Q ss_pred HHHH-HHHhCCCCchhhhhH------HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 91 SYQE-LEIEDPNDFRPYFCK------GMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 91 ~~~~-~~~~~p~~~~~~~~~------~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+.+ +....|++......+ +.....+|+..++...+.++....|.+
T Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 123 DISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 5544 777778777665544 777777888899999999998888887
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.46 E-value=0.062 Score=35.90 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CchhhhhHHHHHHhcCCHH
Q 031170 45 GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN----DFRPYFCKGMIYSLLDRNA 120 (164)
Q Consensus 45 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~~~~ 120 (164)
.++|...|-++-....- . .+...+.+|..|. ..|.++|+..+.+++...+. +++.+..++.++...|+++
T Consensus 122 d~~A~~~fL~~E~~~~l-~----t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPEL-E----TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred cHHHHHHHHHHcCCCCC-C----CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 46676666665333221 1 3666677776555 66888888888888877544 3566777888888888887
Q ss_pred HHH
Q 031170 121 EAK 123 (164)
Q Consensus 121 ~A~ 123 (164)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.42 E-value=0.012 Score=28.33 Aligned_cols=29 Identities=21% Similarity=-0.002 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..+..+|.+|...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556777888888888888888777764
No 316
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.37 E-value=0.0076 Score=42.84 Aligned_cols=83 Identities=10% Similarity=-0.100 Sum_probs=62.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH-HHHHHHHccCHHHHHHHHHHHHH
Q 031170 19 EEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI-MAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 19 ~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
.++-...|+++..|...+..-.+.+.|.+--..+.++++..|. +...|.. .+.-++..++++.+...|.+++.
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~------nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL------NVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 3444456778888887777777777888888888888888887 5666664 45556677888888888888888
Q ss_pred hCCCCchhhh
Q 031170 98 EDPNDFRPYF 107 (164)
Q Consensus 98 ~~p~~~~~~~ 107 (164)
.+|..+..|.
T Consensus 171 ~N~~~p~iw~ 180 (435)
T COG5191 171 MNSRSPRIWI 180 (435)
T ss_pred cCCCCchHHH
Confidence 8888887764
No 317
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.024 Score=39.50 Aligned_cols=71 Identities=13% Similarity=-0.051 Sum_probs=54.3
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
+=..+...++++.|....++.+..+|. .+.-+.-.|.+|.+.|.+.-|++.++..+...|+++.+-.....
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~------dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPE------DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCC------ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888888888888888888887 56666677888888888888888888888888887765544443
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.29 E-value=0.16 Score=33.29 Aligned_cols=125 Identities=18% Similarity=0.113 Sum_probs=92.1
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLS--FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
+.+.+..++|+.-|..+-+..-.. .-+.+..+.+..+.|+-..|+..|..+-.-.|..... ...+.+.-+.++...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~--rd~ARlraa~lLvD~ 145 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG--RDLARLRAAYLLVDN 145 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh--hHHHHHHHHHHHhcc
Confidence 446678899999998887765444 3356778899999999999999999877655431110 123445567778889
Q ss_pred cCHHHHHHHHHHHH-HhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 83 KNVDEALKSYQELE-IEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 83 ~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
|.|+.-..-.+... ..+|-...+.-.+|..-.+.|++..|...|.....
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99998877665543 23455566677889999999999999999998875
No 319
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.18 Score=33.15 Aligned_cols=106 Identities=21% Similarity=0.176 Sum_probs=77.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHh-hccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-----ALFENALLMDRCGEGEAVIKRLEEALE-IAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~l 75 (164)
|.+..+.|+...|+..|.++-...| .|. +...-+.++...|.|+......+.+-. .+|- ...+.-.|
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~m------R~sArEAL 173 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPM------RHSAREAL 173 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChh------HHHHHHHH
Confidence 4467788999999999998866544 223 345667788999999998777665422 1222 34566688
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
|...++.|++..|.++|.++.. +...++...+++.+...
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 9999999999999999998776 56666666677776554
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.22 E-value=0.043 Score=38.67 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALK 90 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 90 (164)
|..-....++.++. ....++..++..+...|+++.++..+++.+..+|. +...+..+-..|...|+...|+.
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~------~E~~~~~lm~~y~~~g~~~~ai~ 208 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPY------DEPAYLRLMEAYLVNGRQSAAIR 208 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHcCCchHHHH
Confidence 44444444444442 24556677777777777777777777777777777 56777777777777777777777
Q ss_pred HHHHHHH
Q 031170 91 SYQELEI 97 (164)
Q Consensus 91 ~~~~~~~ 97 (164)
.|++.-+
T Consensus 209 ~y~~l~~ 215 (280)
T COG3629 209 AYRQLKK 215 (280)
T ss_pred HHHHHHH
Confidence 7776654
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.19 E-value=0.37 Score=37.68 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=77.4
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----c
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL----Q 82 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~ 82 (164)
+++.|..+|.++-.. +++.+.+.+|.++..-. +...|..+|..|.+... ..+.+.+|.||.. .
T Consensus 308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--------~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--------ILAIYRLALCYELGLGVE 377 (552)
T ss_pred cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhCCCcC
Confidence 678899999998765 57788888998887665 45799999999988764 5677788888764 3
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc-CCHHHHHHHHH
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL-DRNAEAKEEFA 127 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~l~ 127 (164)
.+...|..++.++.... .+.+.+.++..+... +.+..+.-.+.
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~ 421 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYL 421 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHH
Confidence 58999999999999875 445455555544442 55544444333
No 322
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.19 E-value=0.051 Score=38.33 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
..++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|.+.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4566678999999999999999999999999999999999999999999999999999988774
No 323
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.11 Score=36.29 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=59.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 72 RFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
...+=..+...++|+.|..+.++.+..+|.++..+.-.|.+|.++|-+.-|+..+...+...|++
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 33455567889999999999999999999999999999999999999999999999999999998
No 324
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.12 E-value=0.025 Score=40.31 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh-HHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC-KGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
++..|...+....+.+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 46777777777788889999999999999999999999987 445667799999999999999999999944
No 325
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.06 E-value=0.033 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHH--HHHHHhhccc
Q 031170 30 EALFENALLMDRCGEGEAVIKR--LEEALEIAED 61 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~--~~~a~~~~~~ 61 (164)
+.++.+|..+..+|++++|+.. +.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577778888888888888888 4366666553
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.05 E-value=0.0095 Score=25.84 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRL 52 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~ 52 (164)
...+|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444455555555555554443
No 327
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.98 E-value=0.017 Score=27.68 Aligned_cols=30 Identities=23% Similarity=0.092 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
+++..+|.+....++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777653
No 328
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.96 E-value=0.12 Score=42.57 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=77.5
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCchhhh
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-------KNVDEALKSYQELEIEDPNDFRPYF 107 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-------~~~~~A~~~~~~~~~~~p~~~~~~~ 107 (164)
.-.++...+.|+.|+..|++.....|+... ..++.+..|.....+ ..+++|+.-|++.- ..|.-+--++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 556 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKE---GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYL 556 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCccc---chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHH
Confidence 346777888999999999999999988543 245666666655432 25788888887744 3477777788
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
..+.+|..+|++++-+..|.-+++..|...
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 888999999999999999999999999874
No 329
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.46 Score=35.28 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=92.6
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG--EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
.-.++-+.+...+++.+|++..+|....+++.+.+.. ..-+.+.+++++.+|.+........+. .+..-...+...
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV--~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV--VEQAERSRNLEK 166 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH--HHHHhcccccch
Confidence 3566778889999999999999999999999888755 678999999999999854321111111 122222223467
Q ss_pred HHHHHHHHHHHhCCCCchhhhhHHHHHHh------cCC------HHHHHHHHHHHHhhCCCcc
Q 031170 87 EALKSYQELEIEDPNDFRPYFCKGMIYSL------LDR------NAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~------~~~------~~~A~~~l~~~~~~~p~~~ 137 (164)
+=+.+..+++..++.+..+|..+..++.. .|+ ...-++.-..++-.+|+|.
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 77889999999999999999998887774 331 2344566677788899983
No 330
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=0.035 Score=42.37 Aligned_cols=91 Identities=15% Similarity=-0.014 Sum_probs=73.0
Q ss_pred HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170 40 DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ---KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL 116 (164)
Q Consensus 40 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 116 (164)
+..+.+..|+..|.+++...|. ....+...+.++.+. |+.-.|+.-...++..+|....+++.++.++.+.
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 3444677889999999998887 444445555555543 4666777777788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCc
Q 031170 117 DRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 117 ~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++.+|++....+....|.+
T Consensus 459 ~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hhHHHhhhhHHHHhhcCchh
Confidence 99999999999998888866
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.79 E-value=0.021 Score=24.72 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQ 93 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~ 93 (164)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44556666666666666665553
No 332
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.4 Score=34.13 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=90.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCcHHHHH-------------------HHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL--------SFEALFENALLMDRCGEGEAVIK-------------------RLEE 54 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~-------------------~~~~ 54 (164)
|+-....+++++|+..|.+++..... .......++.+|...|++..--+ .++.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 45567788999999999999987322 24457789999999997754322 2233
Q ss_pred HHhhccccchhhh---------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCchhhh
Q 031170 55 ALEIAEDGNKLKE---------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIE------DPNDFRPYF 107 (164)
Q Consensus 55 a~~~~~~~~~~~~---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~ 107 (164)
.++..|...+..+ ....-..+..++++.|.|..|+.....++.. .|+-...++
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 4444443322111 1222334677889999999999988777654 234456778
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.-+.+|....+..++...+..+....
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 88999999999999998888886654
No 333
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.64 E-value=0.035 Score=24.87 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALL 38 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 38 (164)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888888888766543
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.64 E-value=0.085 Score=29.64 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=35.7
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
.|.-+..+.+.++|+..++++++..++... ...++-.+..+|...|+|.+++.+...=
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~---rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDRED---RFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444666677777777777776655221 2344446677777777777777766443
No 335
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.29 Score=36.34 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=87.6
Q ss_pred hcCCchHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAGNP----L-----SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p----~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
..+++.+|...-+..+.... . ....|+-+..++...|+...-...+...++...-........-....+-+
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 45678888877776655321 1 24457777888888888777777666666543221111112333346778
Q ss_pred HHHHccCHHHHHHHHHHHHHh--CCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 78 IKFLQKNVDEALKSYQELEIE--DPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~--~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|+..+.|++|-+...++.-- ..+ ...-++.+|.+-.-++++..|.+++-+++...|.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 888899999998877765421 111 23446778888888999999999999999999985
No 336
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.64 Score=34.55 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=97.0
Q ss_pred cCCch-HHHHHHHHHHhcCCCCHHHHHHHHHHHH------------HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 8 MGKTQ-DARNVFEEILAGNPLSFEALFENALLMD------------RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 8 ~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
.|.|+ +++..-.+++..+|....+|...-.++. ++.-.++-+.+...+++.+|+ ...+|..
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npk------sY~aW~h 114 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPK------SYGAWHH 114 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCch------hHHHHHH
Confidence 34444 7888888899999988777754332221 222456778888999999999 7889998
Q ss_pred HHHHHHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc----CCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170 75 MAQIKFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL----DRNAEAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 75 la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
...+..+.+ +|..=+...+++++.+|.+..+|..+=.+..+. ....+-+++..+++..++.+|....+
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHH
Confidence 888888766 478889999999999999999987766665552 23567788999999999888654443
No 337
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.60 E-value=0.087 Score=36.92 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|+.+|.+++...|++...+..+|.+....|+.-.|+-+|-+++-.... .+.+...+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P------f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP------FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999976544 45555566655555
No 338
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.38 E-value=0.48 Score=36.57 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=68.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--ccccchhhhhhhHHHHHHHHHHHc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEI--AEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
|..+++.+-|..+|+-.++..++++.........+...++-..+..+|++++.. .++. ..++|-.+-..-..-
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k-----s~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK-----SKEIWDRMLEYESNV 485 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh-----hHHHHHHHHHHHHhc
Confidence 456788888888888888888888888888888888888888888888888887 3321 356666666667777
Q ss_pred cCHHHHHHHHHHHHHhCC
Q 031170 83 KNVDEALKSYQELEIEDP 100 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p 100 (164)
||....++.-++-....|
T Consensus 486 GdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 888777777666555555
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.35 E-value=0.2 Score=28.20 Aligned_cols=62 Identities=6% Similarity=-0.068 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh---HHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC---KGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
-.+..|.-++..++.++|+..+.++++..++...-+.. +..+|...|++.+.+.+.-.-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778999999999999999988876655444 456777899999988876655544
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=95.21 E-value=0.19 Score=34.21 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=27.2
Q ss_pred HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
+++.++..+|+...+.-++..|. +......+-+++.-.|+|++|..-++-+-...|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPt------da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPT------DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCc------cccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34444444555555555554444 33333344444444555555555444444444443
No 341
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.08 E-value=0.083 Score=25.28 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
++..+|.+-...++|++|+.-|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5566777777777777777777777664
No 342
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.58 Score=36.35 Aligned_cols=108 Identities=15% Similarity=-0.041 Sum_probs=79.0
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHH-HHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRL-EEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
+...++...+.-.....+..+|.+..++.+++......|....+...+ +.+....|.+........-.+.+++.....|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (620)
T COG3914 77 LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG 156 (620)
T ss_pred ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence 345677888899999999999999999999998887777666665555 4477887874322222222223688888999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHH
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMI 112 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 112 (164)
...++....+++....|.++.........
T Consensus 157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 157 RTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 99999999999999988886654444333
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.07 E-value=1.1 Score=34.07 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=48.1
Q ss_pred hhhcCCchHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHH-------HHHHHhhccccch-----hhhhhh
Q 031170 5 LSEMGKTQDARNVFE--EILAGNPLSFEALFENALLMDRCGEGEAVIKR-------LEEALEIAEDGNK-----LKEARD 70 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~-----~~~~~~ 70 (164)
....|+++++....+ +++..-| ..-...++..+.++|.++.|+.. |+-|++...-... ......
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~ 348 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE 348 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence 345677777666664 2222222 23345566677777777777654 3333333211000 000366
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
.|..+|.....+|+++-|..+|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 8889999999999999999999883
No 344
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.05 E-value=0.48 Score=32.94 Aligned_cols=85 Identities=16% Similarity=0.026 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 12 QDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
...++.+++++...... ......+|.-|+..|+|++|+++|+.+.......+=......+...+..|+...|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 35566666666643321 234567899999999999999999999776654332222356677889999999999
Q ss_pred HHHHHHHHHHH
Q 031170 86 DEALKSYQELE 96 (164)
Q Consensus 86 ~~A~~~~~~~~ 96 (164)
+..+.+.-+++
T Consensus 235 ~~~l~~~leLl 245 (247)
T PF11817_consen 235 EDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHh
Confidence 98887765543
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.04 E-value=0.11 Score=36.89 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
+...+..|.+.|.+.+|+++.+++++.+|- +...+..+-.++...||--.+++.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344566778888888888888888888887 6777777777888888877777777654
No 346
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.98 E-value=0.19 Score=37.52 Aligned_cols=83 Identities=11% Similarity=-0.053 Sum_probs=63.4
Q ss_pred hhhhcCCchHHHHHHHHHHhcCC--------C-----C-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170 4 LLSEMGKTQDARNVFEEILAGNP--------L-----S-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL 65 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p--------~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 65 (164)
.+++.|+|..|+--|..++.... . + ..+.-.+..||+..++.+-|+....+.|-.+|.
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~---- 260 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS---- 260 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc----
Confidence 45667777777777777766522 1 1 122446888999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHH
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSY 92 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~ 92 (164)
...-++..|.++-...+|.+|..-+
T Consensus 261 --~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 261 --YFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888998888888886644
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.90 E-value=0.12 Score=39.14 Aligned_cols=86 Identities=13% Similarity=-0.087 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
..+++..|..+|...+.+|+++-|..+|+++-+. -.+..+|...|+.+.=.+....+.... +..
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n 406 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLLLLYSSTGDREKLSKLAKIAEERG--DIN 406 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHHHHHHHCT-HHHHHHHHHHHHHTT---HH
T ss_pred hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccHHHHHHhCCHHHHHHHHHHHHHcc--CHH
Confidence 3457889999999999999999999988886322 124456677777655555554444331 111
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 105 PYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 105 ~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
..-.++...|+.++.+..|.+.
T Consensus 407 ---~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 407 ---IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHc
Confidence 2223445578888888777665
No 348
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.85 E-value=0.17 Score=23.83 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH--HHHHhCC
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQ--ELEIEDP 100 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~--~~~~~~p 100 (164)
.+..+|-.+..+|++++|+..|+ -+...+|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34455666666666666666633 4444444
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.55 E-value=0.11 Score=25.72 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 33 FENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 33 ~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
+.+|..|.+.|+.+.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566777777777777777777774
No 350
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.49 E-value=1.6 Score=33.24 Aligned_cols=85 Identities=8% Similarity=0.043 Sum_probs=67.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170 17 VFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELE 96 (164)
Q Consensus 17 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 96 (164)
-+++-|+.+|++...|+.+..-+..+|.+++-.+.+++...-.|- ...+|...-.--+..+++......|.+++
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~------~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPI------MEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcc------ccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 567778899999999999999999999999999999999988887 55666654444456678998888998888
Q ss_pred HhCCCCchhhhh
Q 031170 97 IEDPNDFRPYFC 108 (164)
Q Consensus 97 ~~~p~~~~~~~~ 108 (164)
...- +.+.|..
T Consensus 104 ~k~l-~ldLW~l 114 (660)
T COG5107 104 KKSL-NLDLWML 114 (660)
T ss_pred hhhc-cHhHHHH
Confidence 7632 3444433
No 351
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.049 Score=39.37 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=83.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhcc---ccchh----------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAE---DGNKL----------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
.+.-.++.++++.|..-+.++++... ..... .........++.+-+..+.+..|+..-..++..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 45567888888888888887776432 10000 001223335778888999999999888888888889
Q ss_pred CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170 102 DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~ 144 (164)
...+++.++..+....++++|++.+..+....|.+......+.
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 9999999999999999999999999999999999955444443
No 352
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.47 E-value=1.1 Score=31.41 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH----------------HHhCCCCchhhhhHHHHH
Q 031170 50 KRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL----------------EIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 50 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~----------------~~~~p~~~~~~~~~~~~~ 113 (164)
++..++++-........+++..+..+|..+.+.|++.+|..+|-.. ....|...+.+..++.+.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~ 150 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQ 150 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 3334444433122223346788899999999999999998887431 122455566666666644
Q ss_pred H-hcCCHHHHHHHHHHHHhh
Q 031170 114 S-LLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 114 ~-~~~~~~~A~~~l~~~~~~ 132 (164)
. ..++...|...+...++.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 4 379999998887777665
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.46 E-value=0.95 Score=30.44 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHh-CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 84 NVDEALKSYQELEIE-DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.=+.|...|.++-.. .-++++..+.+|..|. .-+.++++..|.+++.+.+.+
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD 173 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC
Confidence 334566655554332 1235556666666555 456777888888887776554
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.38 E-value=2.4 Score=34.76 Aligned_cols=107 Identities=9% Similarity=-0.009 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc-
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF- 103 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~- 103 (164)
.|......++...-..++++|..++.++...-+.... ...........|.+....|+.++|++..+.++..-|...
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3555667788888999999999998887765443111 001234555678899999999999999999998877643
Q ss_pred ----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 104 ----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 104 ----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
.+....|.+..-.|++++|..+...+.+...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3456678888889999999999999887743
No 355
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.35 E-value=0.74 Score=36.86 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQE 94 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~ 94 (164)
..++..+|..+..+..|++|.++|.+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666554
No 356
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=94.28 E-value=1.3 Score=31.38 Aligned_cols=119 Identities=16% Similarity=0.090 Sum_probs=80.8
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCC----------HHH---HHHHH-HHHHHcCCcHHHHHHHHHHHhhccccchhhhh
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLS----------FEA---LFENA-LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA 68 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~----------~~~---~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 68 (164)
..++...||..|++..+++++.-.++ .+. +..+| +++.++++|.+++...-+-...-.+- .
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl-----P 117 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL-----P 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC-----C
Confidence 44566678999999999988753211 121 22333 57889999999988877766543320 2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc--hhhhhHHHHHHh-----cCCHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF--RPYFCKGMIYSL-----LDRNAEAKEEFA 127 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~~~~~~~-----~~~~~~A~~~l~ 127 (164)
+.+.-.--.+|.+.++.....+.-..-+.. |.+. .-+-..+.+|.. .|.+++|.+...
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 344445566788999999888888777765 5543 234555666655 899999999873
No 357
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.27 E-value=0.38 Score=40.58 Aligned_cols=128 Identities=15% Similarity=0.038 Sum_probs=90.5
Q ss_pred hhcCCchHHHH------HHH-HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hhhhhHHHHHH
Q 031170 6 SEMGKTQDARN------VFE-EILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KEARDVRFIMA 76 (164)
Q Consensus 6 ~~~~~~~~A~~------~~~-~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~la 76 (164)
...|.+.+|.+ ++. ..-.++|.....+..++.++...+++++|+..-.+++-+....-.. ......+..++
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34556665555 665 3444678888999999999999999999999988877765332111 11234455778
Q ss_pred HHHHHccCHHHHHHHHHHHHHh-----CC---CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 77 QIKFLQKNVDEALKSYQELEIE-----DP---NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~-----~p---~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
...+..+....|+..+.++... .| .-.....+++.++...++++.|+++++.|.+..
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888898888887664 22 222334566777777889999999999998854
No 358
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.26 E-value=2 Score=33.48 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH-HHHHHHHHccCHHHHHH
Q 031170 12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF-IMAQIKFLQKNVDEALK 90 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~la~~~~~~~~~~~A~~ 90 (164)
+.+...|...+...|..-..|...|....+.|..+.+...|++++.-.|- +...|. .++.+-...|+.+.-..
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~------SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPL------SVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHhccCCCHHHHHH
Confidence 56777888888889999899999999999999999999999999998886 556665 45555556777777778
Q ss_pred HHHHHHHhCCCC---chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 91 SYQELEIEDPND---FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 91 ~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|+.+....-.+ .+.|-..-.....++++..-...|.+.+...-..
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~ 184 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQ 184 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhH
Confidence 888887764433 3445555555566788888888888887765433
No 359
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.10 E-value=0.15 Score=37.98 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=39.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHH--------hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEI--------EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
.+.+++.-.|||..|++.++.+-- ..+-....++..|.+|.+++++..|++.|...+.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888887765311 0122445667788888888888888888877653
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.10 E-value=0.17 Score=25.03 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=16.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
+.+|..|+..|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3566677777777777777777664
No 361
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.06 E-value=0.64 Score=32.16 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCC
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPL 27 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (164)
+|++..+.|+|++.+.++.+++..+|.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 477888999999999999999999774
No 362
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=1.4 Score=36.97 Aligned_cols=115 Identities=17% Similarity=0.054 Sum_probs=68.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-------------- 67 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------------- 67 (164)
|......|...+|++.|-++ ++|..+.....+..+.|.|++-+.++.-+-+......-...
T Consensus 1111 akAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1111 AKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHH
Confidence 44555666677777776544 56666777777777778887777777666554432110000
Q ss_pred -------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 68 -------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 68 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
+..-....|+-.+..+.|+.|.-+|..+ ..|-.++..+..+|++..|+..-+++
T Consensus 1186 E~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1186 EEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0111112344555566666665555432 23446777888888888888877666
No 363
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.98 E-value=0.96 Score=31.78 Aligned_cols=106 Identities=13% Similarity=-0.028 Sum_probs=50.6
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
..++|++|++++... +..+++.|++..|.++..-.++......... +....-.+..+....+.-+
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~-~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPV-DEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCCc
Confidence 457788888777655 3455555555555554444444322111110 1112223444443333221
Q ss_pred -HHHHHHHHHHHhC------CCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170 87 -EALKSYQELEIED------PNDFRPYFCKGMIYSLLDRNAEAKEEFA 127 (164)
Q Consensus 87 -~A~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~l~ 127 (164)
+-.++..++++-. -.++..+..+|..+...|++.+|..+|-
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 1223333333322 2356778888999999888888887764
No 364
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.90 E-value=0.55 Score=29.47 Aligned_cols=56 Identities=16% Similarity=0.023 Sum_probs=30.9
Q ss_pred HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 37 LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
.+...+|+-++--..+....+.... ++.+++.+|..|-+.|+..++-+.+.++-+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~------~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEI------NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCC------CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455666666655555555543222 4667777777777777777777777666543
No 365
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.86 E-value=0.19 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCK 109 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~ 109 (164)
+++.+...|++++...|.+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34455555555555555544444433
No 366
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.84 E-value=0.74 Score=32.64 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=64.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA 68 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 68 (164)
||.+|+..|+|.+-...+.++....... .+++-.-..+|-.+.+..+-..+|++++.+-.--..+.--
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 4667788888888777777765542211 2233334467788888888888899998875432211111
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
..+.-.-|.++.+.|+|++|..-|-.+.+....
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 111122366788999999998888888776443
No 367
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=93.65 E-value=1.7 Score=32.36 Aligned_cols=56 Identities=18% Similarity=0.043 Sum_probs=37.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHH--HHHHHH--HHHHHcCCcHHHHHHHHHHHhh
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFE--ALFENA--LLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~la--~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
..++..++|..|...++.+...-|.... .+..+. .-+-..-++.+|.+.+++.+..
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567788888999988888886444433 333333 3344666778888888887765
No 368
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.63 E-value=0.4 Score=40.46 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=90.7
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc-cchhhhh-hh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED-GNKLKEA-RD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~-~~ 70 (164)
+|+++...|++++|+..-.++.-. .|+....+..++...+..+....|+..+.++..+-.- .+...+. ..
T Consensus 979 La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~ 1058 (1236)
T KOG1839|consen 979 LAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTAL 1058 (1236)
T ss_pred HHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhh
Confidence 466788899999999988777554 3455667888998999999999999999888775311 1111111 33
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------chhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPND--------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
....++.++...++++.|+++.+.++..+..- ...+..++.++.-++++..|....+....+
T Consensus 1059 ~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1059 SFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 33477888889999999999999999864331 122344555555567776666665555444
No 369
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.60 E-value=0.15 Score=38.83 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=71.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
+.++...|+|+.|...+..+-+.-.....+...+-...+..|++++|....+-.+.-.-. .+++...-|...-.
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie------~~ei~~iaa~sa~~ 403 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE------DEEVLTVAAGSADA 403 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC------ChhheeeecccHHH
Confidence 467788999999999998777665555566666677889999999999887777664433 24444444455567
Q ss_pred ccCHHHHHHHHHHHHHhCCCC
Q 031170 82 QKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~ 102 (164)
.|-++++.-++.+++.++|..
T Consensus 404 l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 404 LQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HhHHHHHHHHHHHHhccCChh
Confidence 788999999999999988764
No 370
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.37 E-value=1.3 Score=32.02 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=61.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS--------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVR 72 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 72 (164)
||.+|...++|..|...+.- +..+.+. ...+..+|.+|.+.++..+|..+..++--.-.......-.....
T Consensus 109 LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~k 187 (399)
T KOG1497|consen 109 LASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYK 187 (399)
T ss_pred HHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 46788999999999888743 3333321 23467899999999999999888877543222111110012333
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
...|++.-..++|-+|...|-++..
T Consensus 188 vc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 188 VCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777888888777766543
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.34 E-value=0.59 Score=33.33 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
.....+..|...|.+.+|+...++++..+|-+...+..+-.++...|+--.++.++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44456778899999999999999999999999999999999999999977777777665
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.31 E-value=2.1 Score=30.46 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=71.3
Q ss_pred CCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh-hhhhHHHHHHHHHHHcc
Q 031170 9 GKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-EARDVRFIMAQIKFLQK 83 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 83 (164)
.++++|+.-|++++...|.-. .++..+..+.+.+++|++-...|.+.+..-.+..... +...+. .+-+.-....
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN-~IlDyiStS~ 119 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN-SILDYISTSK 119 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHhhhh
Confidence 478999999999999987653 3566677899999999999888888766432211100 000010 1111111222
Q ss_pred CHHHHHHHHHHHHHh--CCCCchhhh----hHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 84 NVDEALKSYQELEIE--DPNDFRPYF----CKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~--~p~~~~~~~----~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
+.+--..+|+..+.. +..+.+.|+ .+|.+++..|++.+-...+++....
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 233333333332221 233444554 5788888888887777777666443
No 373
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.17 E-value=0.58 Score=32.78 Aligned_cols=62 Identities=8% Similarity=-0.088 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 48 VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 48 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
|..+|.+|+.+.|. ....+..+|.++...|+.=.|+-+|-+++......+.+.-++..++..
T Consensus 1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999 778888999999999999999999988886543345566666666555
No 374
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.11 E-value=4.9 Score=36.68 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=77.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chh----------hhhhh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKL----------KEARD 70 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~----------~~~~~ 70 (164)
|++-...|+++.|-...-.+.+.. -+.+....|..+-.+|+...|+..+++.+..+-.+ ..+ .....
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~ 1754 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKK 1754 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhh
Confidence 455566889999988888876654 66788888999999999999999999999654322 111 00122
Q ss_pred HHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 71 VRFIMAQIKFLQKNV--DEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 71 ~~~~la~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
+.+.++.-....+++ +.-+++|..+....|.....++.+|..|.+
T Consensus 1755 ~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1755 AKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 333333333344443 345788899999999888888888865554
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.97 E-value=3.5 Score=33.92 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=64.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
|.+....|++++|+++.+.++..-|.+ .-+...+|.+..-.|++++|..+...+.+....-+...-...+....+
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s 544 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456677899999999999999987765 345678889999999999999999998887433111111122333557
Q ss_pred HHHHHccC--HHHHHHHHHH
Q 031170 77 QIKFLQKN--VDEALKSYQE 94 (164)
Q Consensus 77 ~~~~~~~~--~~~A~~~~~~ 94 (164)
.+...+|+ +.+....+..
T Consensus 545 ~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 545 EILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 78888883 3333444433
No 376
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.96 E-value=0.75 Score=37.17 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=57.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH---
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI--- 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~--- 78 (164)
|.-|...|+|+-|.++|.++-. .......|-+.|+|+.|..+-+++..... ....+...+.-
T Consensus 772 adhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~~e~-------t~~~yiakaedlde 836 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHGPEA-------TISLYIAKAEDLDE 836 (1636)
T ss_pred HHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcCchh-------HHHHHHHhHHhHHh
Confidence 3445566666666666655411 11223455666777776665555433211 12233333333
Q ss_pred ----------HHHccCHHHHHHHHHHH------HH----hCCCC-chhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 79 ----------KFLQKNVDEALKSYQEL------EI----EDPND-FRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 79 ----------~~~~~~~~~A~~~~~~~------~~----~~p~~-~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
|...|..++|+..|.+. +. ..|+. .+.+...+.-+...|+.+.|...|-++
T Consensus 837 hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 34444555555555542 11 11221 123445666667778888887777665
No 377
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=4.3 Score=34.35 Aligned_cols=85 Identities=12% Similarity=-0.011 Sum_probs=47.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhc----------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAG----------------------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
|.+....+-|++|...|.+--.. .-+.+.+|..+|.+.++.|...+|++.|-++
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 34455566677777776543110 1134566666666666666666666666554
Q ss_pred cccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 60 EDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 60 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
+ ++..+...-++..+.|.|++-+.++.-+-+
T Consensus 1131 -d------Dps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1131 -D------DPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred -C------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1 233444455555566666666666655443
No 378
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.69 E-value=1.1 Score=28.30 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
....+..+.-.+..|++.-|......++..+|++..+...++.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45566778888899999999999999999999999888888888877654
No 379
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.59 E-value=2.7 Score=29.80 Aligned_cols=125 Identities=10% Similarity=-0.103 Sum_probs=75.2
Q ss_pred chhhhhcC-CchHHHHHHHHHHhc----CCC---C-------HHHHHHHHHHHHHcCCcHH---HHHHHHHHHhhccccc
Q 031170 2 ARLLSEMG-KTQDARNVFEEILAG----NPL---S-------FEALFENALLMDRCGEGEA---VIKRLEEALEIAEDGN 63 (164)
Q Consensus 2 a~~~~~~~-~~~~A~~~~~~~l~~----~p~---~-------~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~~~~~ 63 (164)
|......+ ++++|..+++++.+. .+. . ..++..++.++...+.++. |...++.+-.-.|+
T Consensus 42 G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-- 119 (278)
T PF08631_consen 42 GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-- 119 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--
Confidence 34456777 999999999999887 221 1 2346678889998887653 45555555555555
Q ss_pred hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH--HhcCCHHHHHHHHHHHHhh
Q 031170 64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY--SLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~A~~~l~~~~~~ 132 (164)
.+......-.+..+.++.+.+.+.+.+++...+-....+-.....+ ........+...+...+..
T Consensus 120 ----~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 120 ----KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred ----CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 3445544444555578999999999998886442222221111111 1133345566666665544
No 380
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.11 E-value=0.9 Score=33.86 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=68.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc--cchhhhhhhHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAED--GNKLKEARDVRFIMA 76 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~la 76 (164)
|.-|...|+.+.|++.|.++-...... ...+.++..+.+..|+|.....+..++.+.... +......+.+...-|
T Consensus 157 ~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ag 236 (466)
T KOG0686|consen 157 GDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAG 236 (466)
T ss_pred HHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHH
Confidence 556788999999999999965544332 445677778888999999999999888776211 011111244555677
Q ss_pred HHHHHccCHHHHHHHHHHHHH
Q 031170 77 QIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~ 97 (164)
...+.+++|..|.++|-.+..
T Consensus 237 La~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 237 LANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 888888899999999877654
No 381
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.08 E-value=2.3 Score=34.57 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=12.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHH
Q 031170 72 RFIMAQIKFLQKNVDEALKSYQE 94 (164)
Q Consensus 72 ~~~la~~~~~~~~~~~A~~~~~~ 94 (164)
+-.+++-|...|+|+-|.+.|.+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHh
Confidence 33455555555666555555543
No 382
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.08 E-value=3.7 Score=30.17 Aligned_cols=93 Identities=15% Similarity=-0.032 Sum_probs=67.0
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-------------------h
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-------------------K 66 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------------------~ 66 (164)
.+..+.++-+..-..++.++|....++..++.- +..-..+|...++++++........ .
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtn 272 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTN 272 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccc
Confidence 345677788888899999999999998887753 2334567888888888765321110 0
Q ss_pred hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 031170 67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP 100 (164)
Q Consensus 67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 100 (164)
....+...++.|..++|+..+|++.++...+..|
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 0122333678899999999999999999888777
No 383
>PF12854 PPR_1: PPR repeat
Probab=92.04 E-value=0.53 Score=21.67 Aligned_cols=27 Identities=7% Similarity=-0.016 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEE 54 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 54 (164)
+.-.|..+...+.+.|+.++|.++|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445677778888888888888888765
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=91.99 E-value=1.1 Score=29.89 Aligned_cols=48 Identities=23% Similarity=0.091 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 48 VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 48 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
.++..++.++..|+ +.++..++.++...|+.++|....+++....|.+
T Consensus 130 ~~~~a~~~l~~~P~-------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-------PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34555666666675 7777777778888888888888888887777754
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.99 E-value=0.97 Score=33.84 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccc---hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGN---KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
+.++..++.-.|+|..|++.++. ++++...- .+......++.+|-+|..+++|..|++.|.+++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666788999999999988765 33322210 0111356677899999999999999999999865
No 386
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=3.9 Score=37.28 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC---
Q 031170 26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED-PN--- 101 (164)
Q Consensus 26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~--- 101 (164)
..-.+.|...|.+....|+++-|...+-+|.+..+ +.+....|.....+|+-..|+..+++.+..+ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 34577899999999999999999999999888764 5788999999999999999999999998543 33
Q ss_pred -------Cc------hhhhhHHHHHHhcCCH--HHHHHHHHHHHhhCCCc
Q 031170 102 -------DF------RPYFCKGMIYSLLDRN--AEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 102 -------~~------~~~~~~~~~~~~~~~~--~~A~~~l~~~~~~~p~~ 136 (164)
.. .+.+..+......|+. +.-+.+|+.+....|..
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 11 1223333444445553 33567888999999865
No 387
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.97 E-value=5.5 Score=32.01 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHH
Q 031170 45 GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124 (164)
Q Consensus 45 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 124 (164)
..+|...+..+.....+ ....-....+....++|+....++..............|.+|..+...|+.++|..
T Consensus 295 ~~~a~~w~~~~~~~~~~-------~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~ 367 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQS-------TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEE 367 (644)
T ss_pred CHHHHHHHHhcccccCC-------cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHH
Confidence 45555555554433222 22333334455688899888888777544434456677888888888999999999
Q ss_pred HHHHHHh
Q 031170 125 EFAKYRQ 131 (164)
Q Consensus 125 ~l~~~~~ 131 (164)
.|.++..
T Consensus 368 ~~~~~a~ 374 (644)
T PRK11619 368 ILRQLMQ 374 (644)
T ss_pred HHHHHhc
Confidence 9998743
No 388
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=4.6 Score=31.74 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=63.6
Q ss_pred hhhcCCchHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHcCCcHHHHHHHHHH-----HhhccccchhhhhhhHHHHHHH
Q 031170 5 LSEMGKTQDARNVFEEILAGNPL-SFEALFENALLM-DRCGEGEAVIKRLEEA-----LEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a-----~~~~~~~~~~~~~~~~~~~la~ 77 (164)
+.+.|-+..|.++..-+++++|. +|-+...+..+| ++..+|.=-+..++.. +..-|+ ..+-..+|.
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-------~~yS~AlA~ 424 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-------FGYSLALAR 424 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-------chHHHHHHH
Confidence 45678899999999999999998 877766655544 4556666556655554 233343 455567777
Q ss_pred HHHHccC---HHHHHHHHHHHHHhCC
Q 031170 78 IKFLQKN---VDEALKSYQELEIEDP 100 (164)
Q Consensus 78 ~~~~~~~---~~~A~~~~~~~~~~~p 100 (164)
.|..... -..|...+.+|++..|
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 7777766 6788888899988877
No 389
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=1.7 Score=32.49 Aligned_cols=58 Identities=9% Similarity=-0.064 Sum_probs=31.9
Q ss_pred hhhhcCCchHHHHHHHHHH--hcCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 4 LLSEMGKTQDARNVFEEIL--AGNPLSFE--ALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l--~~~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
.|...+.|+.|.....+.. ....++.+ ..+-+|.+..-+++|..|.+++-+|+...|.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 4455556666655555442 11112222 2445666666666666666666666666665
No 390
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=91.68 E-value=2.2 Score=31.47 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEE 54 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 54 (164)
.-+|+-+++.++...|.+......+..+|...|-.+.|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34677788888888888888888888888888888888777755
No 391
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=5.3 Score=31.67 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170 14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ 93 (164)
Q Consensus 14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 93 (164)
.....++++...++. +-.+. +..+.|+++.|.++..++ + +..-|..||+.....+++..|.+|+.
T Consensus 626 ~~g~~e~AL~~s~D~-d~rFe---lal~lgrl~iA~~la~e~-----~------s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 626 SQGMKEQALELSTDP-DQRFE---LALKLGRLDIAFDLAVEA-----N------SEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred hccchHhhhhcCCCh-hhhhh---hhhhcCcHHHHHHHHHhh-----c------chHHHHHHHHHHhhcccchhHHHHHH
Confidence 334455666665543 32333 446778888887665554 2 24556778888888888888888888
Q ss_pred HHHHh--------CCCCchhhhh------------HH-HHHHhcCCHHHHHHHHHHHHhh
Q 031170 94 ELEIE--------DPNDFRPYFC------------KG-MIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 94 ~~~~~--------~p~~~~~~~~------------~~-~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
++-.. ...+.+.+-. .+ .+++..|+++++.+.|..--++
T Consensus 691 ~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 691 RARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRL 750 (794)
T ss_pred hhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcC
Confidence 75332 1222222211 12 3566688888888887765333
No 392
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=4.3 Score=29.80 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred hhhhcCCchHHHHHHHHHHhc--CCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHH------------------
Q 031170 4 LLSEMGKTQDARNVFEEILAG--NPLS--------FEALFENALLMDRCGEGEAVIKRLEEA------------------ 55 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a------------------ 55 (164)
......++++++..|..++.. .|.+ .+....+|.++.+.|+.++-...++..
T Consensus 13 ~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~ 92 (411)
T KOG1463|consen 13 NLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRS 92 (411)
T ss_pred HhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344566789999999999884 2222 345678999999999877654443332
Q ss_pred -Hhhccccchh---------------------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCchhhh
Q 031170 56 -LEIAEDGNKL---------------------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP------NDFRPYF 107 (164)
Q Consensus 56 -~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~ 107 (164)
++..+..... .-.......+..+|+..++|.+|+.....++..-. .-.+..+
T Consensus 93 Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~l 172 (411)
T KOG1463|consen 93 LVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHL 172 (411)
T ss_pred HHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehh
Confidence 2222111100 00123334578899999999999999888776422 2345677
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.-+.+|....+..+|...+..+....
T Consensus 173 lESK~y~~l~Nl~KakasLTsART~A 198 (411)
T KOG1463|consen 173 LESKAYHALRNLPKAKASLTSARTTA 198 (411)
T ss_pred hhhHHHHHHhcchhHHHHHHHHHHhh
Confidence 88999999999999999999886654
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=91.12 E-value=2.4 Score=26.22 Aligned_cols=79 Identities=13% Similarity=-0.069 Sum_probs=0.0
Q ss_pred cCCchHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLS---------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
.+.-..-..++++++....++ ..+|...+.... .+...|..+....-... .+..+...|..
T Consensus 39 ~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~----~A~fY~~wA~~ 108 (126)
T PF08311_consen 39 GGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTK----LALFYEEWAEF 108 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTT----BHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHH----HHHHHHHHHHH
Q ss_pred HHHccCHHHHHHHHHHHH
Q 031170 79 KFLQKNVDEALKSYQELE 96 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~ 96 (164)
+...|++++|.+.|+.+|
T Consensus 109 le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 109 LEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhC
No 394
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.07 E-value=5.7 Score=30.94 Aligned_cols=84 Identities=17% Similarity=0.049 Sum_probs=40.4
Q ss_pred HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170 38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 117 (164)
++....++.-....+.+.+....+ .-+++.++.+|... ..++-...+++.++.+-++...-..++..|.. +
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~e~-------kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i 145 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYGES-------KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-I 145 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h
Confidence 333333444444444555554443 44455555555544 44444555555555555544444444444433 4
Q ss_pred CHHHHHHHHHHHH
Q 031170 118 RNAEAKEEFAKYR 130 (164)
Q Consensus 118 ~~~~A~~~l~~~~ 130 (164)
+.+.+..+|.+++
T Consensus 146 k~sk~a~~f~Ka~ 158 (711)
T COG1747 146 KKSKAAEFFGKAL 158 (711)
T ss_pred chhhHHHHHHHHH
Confidence 5555555555554
No 395
>PF13041 PPR_2: PPR repeat family
Probab=90.76 E-value=0.9 Score=22.75 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
.-.|..+...+.+.|++++|.++|++..+.+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3456777788888888888888888887754
No 396
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.62 E-value=1 Score=30.81 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=52.8
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
.+...+..++|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-++.|+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3566788999999999999999999998888889999999999999999999999887
No 397
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=90.62 E-value=0.53 Score=20.53 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 33 FENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 33 ~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
..+-..+.+.|++++|...+++..+
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhH
Confidence 3444555556666666655555443
No 398
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=90.52 E-value=5.1 Score=28.92 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=83.7
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH----Hhhcccc-------chhhhhhhH--HH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEA----LEIAEDG-------NKLKEARDV--RF 73 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a----~~~~~~~-------~~~~~~~~~--~~ 73 (164)
..+++.+.++..++.+..+|--.+.++..+.++.+.| ++.+...+... +++.|.- +.+..+... |+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL 189 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL 189 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence 4567889999999999999999999999999999999 56665554443 3333331 111111111 11
Q ss_pred ----------------------------HHHHHHHHccCHHHHHHHHHHHHHhCCC---CchhhhhHHHHHHhcCCHHHH
Q 031170 74 ----------------------------IMAQIKFLQKNVDEALKSYQELEIEDPN---DFRPYFCKGMIYSLLDRNAEA 122 (164)
Q Consensus 74 ----------------------------~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~A 122 (164)
.-+......+..+.|+..++..+...+. .....+.++.++...|..+-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA 269 (301)
T TIGR03362 190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA 269 (301)
T ss_pred HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1134456677888888888765443222 233456778888889999999
Q ss_pred HHHHHHHHhhC
Q 031170 123 KEEFAKYRQLS 133 (164)
Q Consensus 123 ~~~l~~~~~~~ 133 (164)
...|.......
T Consensus 270 ~~ll~~L~~~~ 280 (301)
T TIGR03362 270 QQLYAALDQQI 280 (301)
T ss_pred HHHHHHHHHHH
Confidence 99988876553
No 399
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.40 E-value=6.7 Score=30.12 Aligned_cols=51 Identities=10% Similarity=-0.013 Sum_probs=23.0
Q ss_pred HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 41 RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 41 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
.+|++..|-..|+-.+...|+ .+......-..++..++-..|...|+.++.
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d------~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPD------STLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 344555555555555555554 222222333334444555555555554443
No 400
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.21 E-value=7.5 Score=30.35 Aligned_cols=56 Identities=11% Similarity=-0.044 Sum_probs=33.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
+++|.+. ..++-..+++++...+-++...-..++..|.+ ++-.++..+|.+++...
T Consensus 106 ~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 106 LQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence 3444444 34555556666666655555555566655554 66777777777777654
No 401
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=5.5 Score=28.41 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170 12 QDARNVFEEILAGNPLSFEALFENALLMDRC--GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL 89 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 89 (164)
+.-.++...+++.+|.+-++|...-.++... .++.--....++.++.++.+..-..-....+.-+.-.+...++..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3446778889999999999998877776654 56777788889999999884321110111111122234445566667
Q ss_pred HHHHHHHHhCCCCchhhhhH---HHHHHhcCC------HHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170 90 KSYQELEIEDPNDFRPYFCK---GMIYSLLDR------NAEAKEEFAKYRQLSPKKFEVEGYLRTPL 147 (164)
Q Consensus 90 ~~~~~~~~~~p~~~~~~~~~---~~~~~~~~~------~~~A~~~l~~~~~~~p~~~~~~~~~~~~~ 147 (164)
++-..++..++.+..+|... -...++.|+ .++-+++....+-..|++.....++..+.
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 88888899999999998776 333333333 45567777788888999966666655443
No 402
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.83 E-value=1.3 Score=24.76 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=4.5
Q ss_pred HHHhCCCCch
Q 031170 95 LEIEDPNDFR 104 (164)
Q Consensus 95 ~~~~~p~~~~ 104 (164)
++...|++..
T Consensus 39 ~~~~~pD~~~ 48 (75)
T cd02682 39 IVKNYPDSPT 48 (75)
T ss_pred HHHhCCChHH
Confidence 3334455444
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=89.66 E-value=2.6 Score=28.04 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+..++..++.+...|+ +..+..++.++...|+.++|...+.++....|.+
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 44556777788888888 3456677999999999999999999999999954
No 404
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.65 E-value=2.9 Score=26.48 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH
Q 031170 27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
+..+.....+.-.+..|++.-|..++..++..+|+ +..+...+++++...|.-
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~------n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPD------NEEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHHHh
Confidence 34566777888889999999999999999999998 677777777777666543
No 405
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=8.4 Score=30.01 Aligned_cols=128 Identities=15% Similarity=0.136 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHH
Q 031170 12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKS 91 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 91 (164)
+.+.+.+.......|+++--....+.++...|+-+.|+..++..+. +.-... ..-..+.+|.++.-+.+|..|...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~--~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQV--KSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4556666667778898888778888888888887778888888887 221111 234455789999999999999999
Q ss_pred HHHHHHhCCCCchhh--hhHHHHHHh--------cCCHHHHHHHH---HHHHhhCCCcchhhhHhh
Q 031170 92 YQELEIEDPNDFRPY--FCKGMIYSL--------LDRNAEAKEEF---AKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 92 ~~~~~~~~p~~~~~~--~~~~~~~~~--------~~~~~~A~~~l---~~~~~~~p~~~~~~~~~~ 144 (164)
+....+. .+...+. +..|.++.+ .|+-+++-.++ ...+...|.+.+.+.++.
T Consensus 326 ~~~L~de-sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~ 390 (546)
T KOG3783|consen 326 FDLLRDE-SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIV 390 (546)
T ss_pred HHHHHhh-hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHH
Confidence 9887776 3333333 334444444 23444443333 344555666655445543
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=89.45 E-value=1.4 Score=29.24 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=19.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
..++.+.|.+++|.+.+++... +|+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~ 142 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPE 142 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCC
Confidence 4577888888888888888777 555
No 407
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.32 E-value=6.8 Score=31.83 Aligned_cols=66 Identities=17% Similarity=0.078 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc---------cch-------hhhhhhHHHHHHHHHHHccCHHHHHHHH
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAED---------GNK-------LKEARDVRFIMAQIKFLQKNVDEALKSY 92 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 92 (164)
.+++..+|..+....+|++|.++|.+.-..... .+. +..+...+-.+|+++...|.-++|.++|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 457888999888888999998888764222100 000 0114556667888888888888888777
Q ss_pred HH
Q 031170 93 QE 94 (164)
Q Consensus 93 ~~ 94 (164)
.+
T Consensus 876 Lr 877 (1189)
T KOG2041|consen 876 LR 877 (1189)
T ss_pred Hh
Confidence 55
No 408
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.31 E-value=1.4 Score=35.38 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=72.2
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH--HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK--FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMI 112 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 112 (164)
-++.+++.+++.++.--|..++.+-|..... ........+.++ ...|+|..++.--.-++...|....+++.++.+
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~--~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV--VATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchh--hhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 3466777788888877777777777743221 122222334443 456788888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 113 YSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 113 ~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|...+..+-|++.+.-.....|.+
T Consensus 137 y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 137 YEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc
Confidence 888888888888877777888887
No 409
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.08 E-value=3.9 Score=25.46 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=37.6
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLE 53 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 53 (164)
+...+.+...+.+++.++..++.++..+..+..++.+.+ ..+.+..+.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 344578899999999999998888888888888887653 456666666
No 410
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.04 E-value=2.8 Score=33.56 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=32.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH-------------HHHHhcCCHHHHHHHHHHHHh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG-------------MIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~-------------~~~~~~~~~~~A~~~l~~~~~ 131 (164)
.+++...++|++|....++-.+.-|+ .++..| .++.+.|+-.+|.+.+++...
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 45667788999998877764433222 222223 345557777777777776643
No 411
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.86 E-value=0.53 Score=34.30 Aligned_cols=70 Identities=23% Similarity=0.120 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY 106 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 106 (164)
....++.+-+..+.+..|+..-..++..+++ ...+++..+..+....++++|++.+..+....|++....
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERS------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChh------hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 3444667777777777777777777776555 567777778888888888888888888887778776543
No 412
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=88.80 E-value=1.3 Score=19.65 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
|..+...+.+.|++++|...|.+..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 444556667777777777777666543
No 413
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=88.11 E-value=2.9 Score=25.87 Aligned_cols=57 Identities=7% Similarity=-0.035 Sum_probs=34.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------chhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIEDPND---------------FRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
..+|+..++.+++-.++-+|++++....+- .-.-.+++..+..+|+.+-.+.+++-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 456666667777777777777666542210 111245666777788888777777644
No 414
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=86.95 E-value=2 Score=30.34 Aligned_cols=99 Identities=21% Similarity=0.180 Sum_probs=70.5
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEA-----------LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVR 72 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 72 (164)
.+.-.++.=.|+-.+...+...|.+..+ ++....+ ...-....|.+++.+|+-.....++.....-+.
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~-~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~ 82 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDW-HSDATMENAKELLDKALMTAEGRGDRSKIGLVN 82 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhh-hcccChhhHHHHHHHHHHhhhccCCcceeeeeh
Confidence 4445566667888888888888887433 2222222 223356789999999998876655544445566
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
...+..|+...+|+.|..||..+.....++.
T Consensus 83 ~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~ 113 (368)
T COG5091 83 FRYFVHFFNIKDYELAQSYFKKAKNLYVDDT 113 (368)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 6788889999999999999999998865543
No 415
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.88 E-value=11 Score=28.45 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-------- 101 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------- 101 (164)
.++..+|.-|...|+.+.|+..|.++-....+.+. ....+..+-.+-+-.|+|..-..+..++... |.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q~ 226 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHHh
Confidence 35677888999999999999999997666654322 2455666677778889999888888777654 31
Q ss_pred -CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 102 -DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
.+.+....|.+....+++..|..++-.+..-
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLAEFD 258 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2234455677777788899988887766433
No 416
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.85 E-value=13 Score=28.11 Aligned_cols=135 Identities=16% Similarity=0.028 Sum_probs=75.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC-H-----HHHHHHHHHHHHcCCc-------HHHHHHHHHHHhhcccc----c
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS-F-----EALFENALLMDRCGEG-------EAVIKRLEEALEIAEDG----N 63 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~-~-----~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~~----~ 63 (164)
||...+..|+|+-|...|+-+.+-..++ . .+....|.+.+..+.. ++...+++.|+...-.. .
T Consensus 214 LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~ 293 (414)
T PF12739_consen 214 LADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRC 293 (414)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcccc
Confidence 4778899999999999999888765433 1 1233445555555533 35556666655543320 0
Q ss_pred hh-hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCc-----hh-----------------------------h
Q 031170 64 KL-KEARDVRFIMAQIKFLQKNVDEALKSYQELEIE--DPNDF-----RP-----------------------------Y 106 (164)
Q Consensus 64 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~-----~~-----------------------------~ 106 (164)
.. .-..+..+..+.++...+.+.+|...+-+.... ...-. -. +
T Consensus 294 ~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~~ 373 (414)
T PF12739_consen 294 SLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKYAFHM 373 (414)
T ss_pred ccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHHHHHH
Confidence 00 002344555666677777766655544333322 10100 00 1
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 107 FCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 107 ~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
...|.-+...|+...|.++|.++......
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 22344555577778888888887766543
No 417
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=85.64 E-value=6.5 Score=24.36 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGN----------KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
+.+..+-.++...|+.+....++++...++.+.. ...+....+..+...+...|++..|+++.....+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 4455666677788888888888888777764331 122345677778888888899999999988888877
Q ss_pred CCC
Q 031170 100 PND 102 (164)
Q Consensus 100 p~~ 102 (164)
|-.
T Consensus 83 ~I~ 85 (126)
T PF12921_consen 83 PIP 85 (126)
T ss_pred CCC
Confidence 643
No 418
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.58 E-value=12 Score=27.38 Aligned_cols=99 Identities=8% Similarity=0.079 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhcc--ccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCCchhh
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAE--DGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELE--IEDPNDFRPY 106 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~~ 106 (164)
....+|.+|.+.++|..|-..+.- +..+. ...+..-....+..+|++|...++..+|..+..++. ..+..+....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 456799999999999998776643 33322 111111134556689999999999999999887753 2233444333
Q ss_pred h----hHHHHHHhcCCHHHHHHHHHHHH
Q 031170 107 F----CKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 107 ~----~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
. ..+.++...+++-+|-..|.+..
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23455555777766655555443
No 419
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=85.25 E-value=5.8 Score=23.75 Aligned_cols=50 Identities=10% Similarity=-0.002 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
.......|.+.+..|||..|.+...++.+..+...-.++..+..-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34445668888888999999999888877644444445555555544543
No 420
>PF13041 PPR_2: PPR repeat family
Probab=85.22 E-value=3.3 Score=20.61 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
...+..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 344556667777888888888888877754
No 421
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.06 E-value=11 Score=31.11 Aligned_cols=54 Identities=11% Similarity=-0.045 Sum_probs=34.3
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLS-FEALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
+.+..-|+-|+..-+.- ..+++. ...+...|.-++.+|++++|...|-+.+..-
T Consensus 344 L~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 34445566666554332 222222 3356677888889999999998888877743
No 422
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.77 E-value=2.2 Score=23.84 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=14.2
Q ss_pred HHcCCcHHHHHHHHHHHhhcc
Q 031170 40 DRCGEGEAVIKRLEEALEIAE 60 (164)
Q Consensus 40 ~~~~~~~~A~~~~~~a~~~~~ 60 (164)
-..|+|++|+.+|..+++..-
T Consensus 17 D~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHH
Confidence 355777777777777776543
No 423
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.71 E-value=4.1 Score=22.75 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=15.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
...|.-+-..|++.+|+.+|+.++..
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455555667777777777666553
No 424
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=84.34 E-value=14 Score=27.11 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170 15 RNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE 94 (164)
Q Consensus 15 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 94 (164)
++.+.+-....|+..++.+..+....+.|+|..|..++-......++...- .-...|-.+| .-+-..+|+.|++-+.+
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n-~lsalwGKlA-SEIL~qnWd~A~edL~r 192 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN-YLSALWGKLA-SEILTQNWDGALEDLTR 192 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh-hHHHHHHHHH-HHHHHhhHHHHHHHHHH
Confidence 444444455567788899999999999999999988875555544332110 0122333333 23456689999988877
Q ss_pred HHH
Q 031170 95 LEI 97 (164)
Q Consensus 95 ~~~ 97 (164)
.-+
T Consensus 193 Lre 195 (432)
T KOG2758|consen 193 LRE 195 (432)
T ss_pred HHH
Confidence 543
No 425
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=84.33 E-value=7.6 Score=24.07 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=9.2
Q ss_pred HHHHHHHHccCHHHHHHHH
Q 031170 74 IMAQIKFLQKNVDEALKSY 92 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~ 92 (164)
..|..+...|++.+|.+.|
T Consensus 104 ~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 104 EWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 4444444555555554444
No 426
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=84.30 E-value=14 Score=27.17 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=63.6
Q ss_pred HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH---h----CCCCchhhhhH
Q 031170 37 LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI---E----DPNDFRPYFCK 109 (164)
Q Consensus 37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~----~p~~~~~~~~~ 109 (164)
.+..+.++.++|++++++.+..-.....+.+.......+|.++...||.+++.+.+...-. . .|+-...++.+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3556677899999999998886543333222344555889999999999999888876544 1 12222334444
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHhhC
Q 031170 110 GM-IYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 110 ~~-~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+. .|...|++...-...-+.+...
T Consensus 163 ssqYyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhccc
Confidence 44 4555788877776666665554
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=20 Score=28.40 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=79.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhc-----CC----------------CCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAG-----NP----------------LSFE---ALFENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~-----~p----------------~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
|.++..+|+.+-|.+..++++=. +| .+-. +++..-..+.+.|-+..|.++++-.++
T Consensus 291 a~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls 370 (665)
T KOG2422|consen 291 ADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS 370 (665)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 56677889998888888777531 22 2222 233344566789999999999999999
Q ss_pred hccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH-----HHhCCCCchhhhhHHHHHHh--cCC---HHHHHHHHH
Q 031170 58 IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL-----EIEDPNDFRPYFCKGMIYSL--LDR---NAEAKEEFA 127 (164)
Q Consensus 58 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-----~~~~p~~~~~~~~~~~~~~~--~~~---~~~A~~~l~ 127 (164)
++|..+ ...+.+.+-...++..+|+=-|.+++.. +...|+.. |.++.+++. ... .+.|...+.
T Consensus 371 Ldp~eD----Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~---yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 371 LDPSED----PLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG---YSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred cCCcCC----chhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch---HHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 999743 1222223333334555666555555554 33345543 244444333 332 567889999
Q ss_pred HHHhhCCCc
Q 031170 128 KYRQLSPKK 136 (164)
Q Consensus 128 ~~~~~~p~~ 136 (164)
+|+...|.-
T Consensus 444 qAl~~~P~v 452 (665)
T KOG2422|consen 444 QALKHHPLV 452 (665)
T ss_pred HHHHhCcHH
Confidence 999999954
No 428
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=83.20 E-value=3.3 Score=18.95 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHH
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENA 36 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la 36 (164)
+++.|..+|++.+...|+ +..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 466777777777777764 45555444
No 429
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=82.97 E-value=3 Score=18.43 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
|..+..++.+.|+++.|...+....+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556667777777777777766554
No 430
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.66 E-value=9.9 Score=24.10 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=67.6
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCC------------------HHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhcccc
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLS------------------FEALFENALLM--DRCGEGEAVIKRLEEALEIAEDG 62 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~------------------~~~~~~la~~~--~~~~~~~~A~~~~~~a~~~~~~~ 62 (164)
.-+...|..++..+...+.....+-. ...+-.+|.++ ...|.....+.++-+. +.
T Consensus 10 K~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n~-- 84 (161)
T PF09205_consen 10 KERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---NK-- 84 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T---
T ss_pred HHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---cc--
Confidence 33556778888888888887765521 11122233222 2334444444444332 11
Q ss_pred chhhhhhhHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 63 NKLKEARDVRFIM-AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 63 ~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
..-++.+ -.....+|.-++--+.+....+....+++.++.+|.+|...|+..++-+.+.+|-..-
T Consensus 85 ------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 ------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred ------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 1122222 2345677788888888888887788889999999999999999999999999886543
No 431
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.60 E-value=24 Score=28.54 Aligned_cols=121 Identities=7% Similarity=-0.114 Sum_probs=82.3
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---------------h---hh
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---------------L---KE 67 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~---~~ 67 (164)
...++++.+...+..+-..........+-+|..+...|+.++|...|+++.... +... . ..
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~-~fYG~LAa~~Lg~~~~~~~~~~~~~ 401 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQR-GFYPMVAAQRLGEEYPLKIDKAPKP 401 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCC-CcHHHHHHHHcCCCCCCCCCCCCch
Confidence 456777777777777655444566778888888888999999999998875421 1100 0 00
Q ss_pred ----hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 68 ----ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 68 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
.....+..+..++..|....|...+..++.. .+......++.+....|.++.++....+.
T Consensus 402 ~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 402 DSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0112345567778889999999988887775 23455667777777888888888766544
No 432
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=82.41 E-value=13 Score=25.17 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=40.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENA-LLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
....|+++.|-+.|--++...+=+....-.+| .++...+.-....++++......|.
T Consensus 51 ~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~ 108 (199)
T PF04090_consen 51 CLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPS 108 (199)
T ss_pred HHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHH
Confidence 45678899999999888887766666655666 5777776666665777776666553
No 433
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.40 E-value=20 Score=27.48 Aligned_cols=97 Identities=15% Similarity=0.022 Sum_probs=56.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCCcH---HHHHHHHH---HHhhccccc-
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGN-----------PLSFEALFENALLMDRCGEGE---AVIKRLEE---ALEIAEDGN- 63 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~-----------p~~~~~~~~la~~~~~~~~~~---~A~~~~~~---a~~~~~~~~- 63 (164)
|++.+....|++|+.++-.+-+.. -+.+-.-..+.+||+...+.. .|..-+.. .+...-...
T Consensus 170 aRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl 249 (568)
T KOG2561|consen 170 ARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENL 249 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhh
Confidence 566777788888888776654332 122333345778888777543 34333322 222221111
Q ss_pred --------hhhh----hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 64 --------KLKE----ARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 64 --------~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
...+ ..+.++.-|.+.+.+|.-++|.++++.+...
T Consensus 250 ~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 250 SRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0000 2334445689999999999999999887543
No 434
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.26 E-value=22 Score=28.27 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFA 127 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~ 127 (164)
....+..|..+-..+..++|-.+|+..+..+|+ ..++..+.-+...|-...|...++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344445566666666667777777776666665 444444555555555555555555
No 435
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.18 E-value=18 Score=28.98 Aligned_cols=31 Identities=13% Similarity=-0.184 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 27 LSFEALFENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
+++.-|..||.+....+++..|.++|.++..
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3444555555555555555555555555533
No 436
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=82.11 E-value=6.1 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=12.7
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
+|..+...|++++|..+|-+|+..+|.
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 444444445555555555555555444
No 437
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.69 E-value=18 Score=26.55 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc---hh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF---RP 105 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~ 105 (164)
.+++...|..|.+.|+-+.|.+.+.+..+..-.-+..-...-....+|..|....=..+.++-....++..-+.. ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 568889999999999999999888877765443222211223333566666655555555555555555533321 12
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
-...|...+..-++.+|-..|-..+.....
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 234455555567788888877777665433
No 438
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.85 E-value=13 Score=29.01 Aligned_cols=59 Identities=17% Similarity=0.039 Sum_probs=26.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHH---Hh---CCC-CchhhhhHHHHHHhcCC-HHHHHHHHHHHHhhC
Q 031170 75 MAQIKFLQKNVDEALKSYQELE---IE---DPN-DFRPYFCKGMIYSLLDR-NAEAKEEFAKYRQLS 133 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~---~~---~p~-~~~~~~~~~~~~~~~~~-~~~A~~~l~~~~~~~ 133 (164)
+|.+.-..|+...|..+|..++ .. ++- -+.+++-+|..+..+|. ..++..++.+|....
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 3444444445555555554443 11 111 13344555555555444 555555555554443
No 439
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.67 E-value=23 Score=29.39 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAG 24 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~ 24 (164)
|..++..|++++|...|-+.|..
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc
Confidence 45578899999999999998874
No 440
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=80.40 E-value=8.1 Score=21.64 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=5.8
Q ss_pred ccCHHHHHHHHHHH
Q 031170 82 QKNVDEALKSYQEL 95 (164)
Q Consensus 82 ~~~~~~A~~~~~~~ 95 (164)
.|++++|+.+|.++
T Consensus 19 ~g~y~eAl~~Y~~a 32 (77)
T cd02683 19 EGRFQEALVCYQEG 32 (77)
T ss_pred hccHHHHHHHHHHH
Confidence 34444444444433
No 441
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.32 E-value=21 Score=28.64 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=15.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 109 KGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
...-+...|++++|++.+.+. .+-|.+
T Consensus 511 ~ff~~~~~g~~~~AL~~i~~L-~liP~~ 537 (613)
T PF04097_consen 511 EFFDLYHAGQYEQALDIIEKL-DLIPLD 537 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHHT-T-S-S-
T ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 344455588888888888776 466654
No 442
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.17 E-value=22 Score=30.74 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=69.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC-------------------------HH----HHHHHHHHHHHcCCcHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS-------------------------FE----ALFENALLMDRCGEGEAVIKR 51 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------------~~----~~~~la~~~~~~~~~~~A~~~ 51 (164)
+|.+|...|+.-+|+..|.++....... +. .+.....++.+.+..+++++.
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4677888999999999999987643221 11 122333566666777778888
Q ss_pred HHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHhcCCH
Q 031170 52 LEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF---RPYFCKGMIYSLLDRN 119 (164)
Q Consensus 52 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~ 119 (164)
.-+|++.-|+.... .+.....+-+-+...|.|-+|.+.+ -.+|+.. ..+..+..++++.|.+
T Consensus 1006 A~~AIe~l~dd~ps--~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1006 AVKAIENLPDDNPS--VALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHhCCCcchh--HHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccch
Confidence 88888876653321 2233335555667788888886543 3345532 2344566666665554
No 443
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.09 E-value=9.6 Score=31.00 Aligned_cols=98 Identities=17% Similarity=0.064 Sum_probs=74.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC----HHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS----FEALFENALLM--DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
+..+++.+++..|---|...+..-|.+ .......+.++ ...++|..++.-..-++...|. ...+++..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~------i~~~Ll~r 133 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR------ISKALLKR 133 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch------HHHHHhhh
Confidence 345677788888877788888877743 22334455444 4566888999999999999888 77888888
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
+.+|...+..+-|++...-.....|....+
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 999999999999999877777888887543
No 444
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=80.02 E-value=22 Score=26.36 Aligned_cols=96 Identities=19% Similarity=0.056 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------
Q 031170 33 FENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP------------ 100 (164)
Q Consensus 33 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------ 100 (164)
+.+-+..-+..+..+-++....++.++|. +..++..++.--. .-..+|.+.++++++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~e------CA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNE------CATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQ 259 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCch------hhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 34444445556677778888889999988 7888777765221 124455555555544211
Q ss_pred ---------CCchh----hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 101 ---------NDFRP----YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 101 ---------~~~~~----~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+... -..++.+-.++|+..+|+..++...+..|--
T Consensus 260 ~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~ 308 (556)
T KOG3807|consen 260 SPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL 308 (556)
T ss_pred ccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence 11111 2357888888999999999999988877754
No 445
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=79.95 E-value=3.5 Score=33.05 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 031170 116 LDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 116 ~~~~~~A~~~l~~~~~~~p 134 (164)
.|-+.-+...+.+...+.|
T Consensus 888 l~a~~l~~~~~d~l~~l~~ 906 (1081)
T KOG1538|consen 888 LGAYRLARHAYDKLRGLYI 906 (1081)
T ss_pred hhhhhHHHHHhhhhhccCC
Confidence 3444455566665555544
No 446
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=79.86 E-value=16 Score=24.63 Aligned_cols=97 Identities=8% Similarity=-0.037 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH-----HccCHHHHHHHHHHHHHhCCC
Q 031170 28 SFEALFENALLM-DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF-----LQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 28 ~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~~~~~~p~ 101 (164)
.|+....||..+ --+.+|++|...|..-.+-+.. +...+.+|..++ ..++...|++++..+-. .+
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y-------~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n 103 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSY-------PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--AN 103 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-------cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cC
Confidence 455555555432 2334555555555554443322 333333333222 23355666666655544 34
Q ss_pred CchhhhhHHHHHHh-----cCC--HHHHHHHHHHHHhhC
Q 031170 102 DFRPYFCKGMIYSL-----LDR--NAEAKEEFAKYRQLS 133 (164)
Q Consensus 102 ~~~~~~~~~~~~~~-----~~~--~~~A~~~l~~~~~~~ 133 (164)
++.+-..+|.++.. .++ ..+|.+++.++-.+.
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 44444455554443 122 455666666655444
No 447
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.07 E-value=13 Score=28.44 Aligned_cols=101 Identities=19% Similarity=0.052 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----hhhh-hhhHHHHHHHHHHHccC----------HHHHHHHHHHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGN----KLKE-ARDVRFIMAQIKFLQKN----------VDEALKSYQELE 96 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~-~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~ 96 (164)
+...|.+.++.+.|++|+.++-.|=+.+..=. +... .+-..+.+.+||+...+ ...|.+.|..+-
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 34456677888899999888766544432100 0000 12233356788887764 334555555432
Q ss_pred HhC---------CCCc------hhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 97 IED---------PNDF------RPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 97 ~~~---------p~~~------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
..+ +..+ ...+..|.+.+.+|+.++|.++|+.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 211 2222 23456788999999999999999988655
No 448
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=79.01 E-value=13 Score=23.13 Aligned_cols=73 Identities=18% Similarity=-0.016 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-----hhhh----hhhHHHHHHHHHHHccCHHHHHHHHHHH----HHh
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGN-----KLKE----ARDVRFIMAQIKFLQKNVDEALKSYQEL----EIE 98 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~----~~~ 98 (164)
+..+|...++.+++-.++-.|++|+....+-. .... .......+|..+..+||.+=.+++++-+ +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 55678888999999999999999988754321 1111 1223347899999999999999998655 445
Q ss_pred CCCCch
Q 031170 99 DPNDFR 104 (164)
Q Consensus 99 ~p~~~~ 104 (164)
-|.-+.
T Consensus 84 iPQCp~ 89 (140)
T PF10952_consen 84 IPQCPN 89 (140)
T ss_pred ccCCCC
Confidence 565443
No 449
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.97 E-value=6 Score=21.40 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=11.6
Q ss_pred HHHHHHcCCcHHHHHHHHHHHh
Q 031170 36 ALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~ 57 (164)
|.-+-..|++++|+.+|.+++.
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455555555555555544
No 450
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.71 E-value=6.7 Score=21.19 Aligned_cols=23 Identities=30% Similarity=0.127 Sum_probs=14.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHH
Q 031170 75 MAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
.|.-.-..|++++|+.+|.+++.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444456677777777766654
No 451
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=78.32 E-value=6.4 Score=24.26 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=21.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.+|..+...|++++|..+|-+++...|....
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 5677777777777777777777777666443
No 452
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=78.18 E-value=5.4 Score=18.33 Aligned_cols=14 Identities=36% Similarity=0.231 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHHhh
Q 031170 45 GEAVIKRLEEALEI 58 (164)
Q Consensus 45 ~~~A~~~~~~a~~~ 58 (164)
+++|..+|+++.+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 45566666655543
No 453
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=77.51 E-value=5.1 Score=25.01 Aligned_cols=38 Identities=24% Similarity=-0.027 Sum_probs=21.4
Q ss_pred HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
.++..-+.+.|..+|+.++...|+ ...+++.+-+..-.
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~------HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPD------HLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-------THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcc------hHHHHHHHHHccCc
Confidence 344444556677777777777776 66666655555443
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.16 E-value=25 Score=25.51 Aligned_cols=105 Identities=13% Similarity=-0.052 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc---hh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF---RP 105 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~ 105 (164)
.+++.++|..|.+.++-+.+.+.+.+.++..-..+..-...-....+|.+|..+.=.++.++.....++..-+.. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 668899999999999999998888887776543222111122223566667666666777777777666533321 11
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
-...|...+...++.+|-..+-..+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2244555566677777777777666554
No 455
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.10 E-value=6.6 Score=21.99 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=12.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhh
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
|.-+-..|+|++|+.+|.++++.
T Consensus 13 Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33344555566555555555543
No 456
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=77.08 E-value=30 Score=26.27 Aligned_cols=106 Identities=13% Similarity=-0.049 Sum_probs=61.2
Q ss_pred CCHHH-HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH-------HHHHHHHHHHHHh
Q 031170 27 LSFEA-LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV-------DEALKSYQELEIE 98 (164)
Q Consensus 27 ~~~~~-~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~~~~ 98 (164)
+.++. ...+|.+.+-.++|+-|...|+.+.+-...+..-.-...+.-+.|.+.+..+.. +....+++.+...
T Consensus 205 ~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 205 DSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred CChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 34444 557999999999999999999998775543221111123333455555555522 1333333333222
Q ss_pred C-----------CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 99 D-----------PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 99 ~-----------p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
. .......+..+.++.-.|.+.+|...+-+....
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1 122334555666666688887877777666555
No 457
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=76.98 E-value=13 Score=22.19 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
....|.+....|++..|.+.+.++.+..+. ..-.++.-|.....+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~------~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDN------PLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHcCC
Confidence 445677888999999999999999777554 34444455666666654
No 458
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.91 E-value=7.4 Score=21.78 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=17.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..|.-.-..|+|++|+.+|.+++..
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4445555677888888888887764
No 459
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=76.88 E-value=9.3 Score=20.39 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=30.6
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKS 91 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 91 (164)
.+..++..|+|=+|=+.++.+....+......-..-+....|....+.|+...|...
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666777777777777777765543221111122333445556666777666543
No 460
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=76.71 E-value=6.2 Score=22.12 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHcCCcHHHHHHHHHHHh
Q 031170 37 LLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 37 ~~~~~~~~~~~A~~~~~~a~~ 57 (164)
.-.-..|++++|+.+|.++++
T Consensus 14 ve~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 14 VELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334445555555555555444
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.40 E-value=22 Score=23.86 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=29.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
..+....|.+++|.+.+++... +|+.......+..+-..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 4567789999999999999999 68776655444444433
No 462
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=75.39 E-value=6.3 Score=17.65 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHH
Q 031170 84 NVDEALKSYQELEI 97 (164)
Q Consensus 84 ~~~~A~~~~~~~~~ 97 (164)
|..+|+.+++++..
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 56666666666544
No 463
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=75.21 E-value=0.92 Score=35.39 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhhhhcCCchHHHHHHHHHHh--cCCC-CHHHHHHHHHHHHHcCCcHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILA--GNPL-SFEALFENALLMDRCGEGEAVIKRLE 53 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~ 53 (164)
+.+...|+++.|..++.++-. +.|. ........+.+...+|+++.|+..+.
T Consensus 32 ~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 32 RALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 344555555655555555441 1221 12223344455555555666655554
No 464
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=74.82 E-value=14 Score=27.18 Aligned_cols=48 Identities=23% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcc
Q 031170 13 DARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAE 60 (164)
Q Consensus 13 ~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 60 (164)
+....+..+|+.-|+- ...|..+|.+....|.++..+.+|++|+..+.
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 4444444444444432 23355555555555555555555555555443
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.73 E-value=7.9 Score=31.70 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=72.0
Q ss_pred hcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHH---------HcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAGN-PLSFEALFENALLMD---------RCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~---------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
..|+-++|+...-.+++.. |-.++.+..-|.+|. ..+..+.|+.+|+++.+..|.. ..-..++
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-------~sGIN~a 327 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-------YSGINLA 327 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-------hccccHH
Confidence 3578889999988888765 445666666666653 3456678999999999999872 2222333
Q ss_pred HHHHHccC-HHHHHHHHHHHHHhC-----CCCc---hhhhhHHH---HHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 77 QIKFLQKN-VDEALKSYQELEIED-----PNDF---RPYFCKGM---IYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 77 ~~~~~~~~-~~~A~~~~~~~~~~~-----p~~~---~~~~~~~~---~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
.++...|+ ++...+.=.-..+++ .... .-++-.|. +-...+++.+|+..-....++.|-.+.....+
T Consensus 328 tLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 328 TLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred HHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHH
Confidence 33333332 222221111111110 0000 00111111 11226788888888888888888774444333
No 466
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=73.94 E-value=1 Score=35.11 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred chHHHH-HHHHHHhcCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 11 TQDARN-VFEEILAGNPLS-FEALFENALLMDRCGEGEAVIKRLEEALE--IAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 11 ~~~A~~-~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
...+.+ ++.++-...+.. .......+..++..|++..|...+.+.-. +.+.. .....+..|.+...+|+++
T Consensus 4 ~~~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q-----~~~~~Ll~A~lal~~~~~~ 78 (536)
T PF04348_consen 4 PRQAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ-----QARYQLLRARLALAQGDPE 78 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH-----HHHHHHHHHHHHHhcCCHH
Confidence 333334 444444444322 33345566899999999999999987662 23321 3456667899999999999
Q ss_pred HHHHHHHHH-HHhCCC--CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 87 EALKSYQEL-EIEDPN--DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 87 ~A~~~~~~~-~~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.|+..+... ...-|. ....+..++.++...|++-+|.+.+-..-..-
T Consensus 79 ~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL 128 (536)
T PF04348_consen 79 QALSLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLL 128 (536)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 999998742 111122 22334567788888888888877655554433
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=73.87 E-value=15 Score=27.13 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHcCCc-HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 39 MDRCGEG-EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 39 ~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
++..|-. ++....+...++.-|+... ...+|..+|.+.-..|.++..+..|++|+.....-
T Consensus 112 Li~eGcp~eei~~~L~~li~~IP~A~K---~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 112 LIEEGCPKEEILATLSDLIKNIPDAKK---LAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCchHHH---HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
Confidence 3556655 4678888888888886433 47889999999999999999999999999876553
No 468
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=73.18 E-value=28 Score=24.15 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=17.9
Q ss_pred hhcCCchHHHHHHHHHHhcCC
Q 031170 6 SEMGKTQDARNVFEEILAGNP 26 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p 26 (164)
+-.|+|+.|+++..-+|..+-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC
Confidence 457999999999999999753
No 469
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.51 E-value=37 Score=25.22 Aligned_cols=121 Identities=14% Similarity=0.076 Sum_probs=84.3
Q ss_pred CCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc
Q 031170 9 GKTQDARNVFEEILAGN-PLSFEALFENALLMDR-----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ 82 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 82 (164)
+-.+++...+.+++... |+-....-.++-++.. .-+|..-..+|.-.....|+ +-+.++.+....+.
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-------PvV~LNRAVAla~~ 342 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-------PVVTLNRAVALAMR 342 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-------CeEeehHHHHHHHh
Confidence 34567788888887754 5554444445545433 23566667777777777776 55666666666666
Q ss_pred cCHHHHHHHHHHHHHh--CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 83 KNVDEALKSYQELEIE--DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.-...++...+-.... -......+-..|..+.+.|+.++|...|++++.+.++.
T Consensus 343 ~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 343 EGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred hhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 6677777777665554 22344455678899999999999999999999999876
No 470
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.92 E-value=38 Score=25.14 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=66.2
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEAL 89 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 89 (164)
+|..=..+|+-+....| +|-+-.+.+....+..-.+.++...+-+.....-+ ...-++-..|.+..+.|..++|.
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~----gy~~~h~~RadlL~rLgr~~eAr 385 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLD----GYHLYHAARADLLARLGRVEEAR 385 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc----cccccHHHHHHHHHHhCChHHHH
Confidence 45555556666666655 44555566666666666777887777665542211 13456667899999999999999
Q ss_pred HHHHHHHHhCCCCchhhhhHHH
Q 031170 90 KSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 90 ~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
..|++++...++..+..+....
T Consensus 386 ~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 386 AAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHHHHHhcCChHHHHHHHHH
Confidence 9999999998887665554433
No 471
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.88 E-value=35 Score=24.95 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=65.0
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
+...|+...|..+-.+. +. .+...|......+...++|++-..+.. . +..| -.+.-...+....|+
T Consensus 187 li~~~~~k~A~kl~k~F-kv--~dkrfw~lki~aLa~~~~w~eL~~fa~-s-kKsP---------IGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEF-KV--PDKRFWWLKIKALAENKDWDELEKFAK-S-KKSP---------IGYEPFVEACLKYGN 252 (319)
T ss_pred HHHCCCHHHHHHHHHHc-CC--cHHHHHHHHHHHHHhcCCHHHHHHHHh-C-CCCC---------CChHHHHHHHHHCCC
Confidence 45677777776664433 33 356778888889999999987665433 2 3333 223334556667899
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE 125 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 125 (164)
..+|..+..++ |.. .....|...|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----~~~-----~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----PDE-----ERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----ChH-----HHHHHHHHCCCHHHHHHH
Confidence 99999999992 331 446677888888888665
No 472
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=71.88 E-value=43 Score=25.69 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHh--hccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 33 FENALLMDRCGEGEAVIKRLEEALE--IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 33 ~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
..+...+++.|..++++..+..=+. ++|+ ......+-+.++..|+|..|.+....+..
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D-------~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPD-------NFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCC-------hhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 3555667777777777777755444 3344 33334456677777777777777765543
No 473
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.63 E-value=39 Score=25.37 Aligned_cols=59 Identities=20% Similarity=0.014 Sum_probs=38.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCch--hhhh--HHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFR--PYFC--KGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~--~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
..+.-.+..++|..|...+..+...-|.+.. .+.. .|..+...-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566677888888888888887765333333 2222 334444477888888888877655
No 474
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.05 E-value=61 Score=27.39 Aligned_cols=101 Identities=10% Similarity=0.121 Sum_probs=62.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhccccchhh-------hh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAG----NPLSFEALFENALLMDRCGEG--EAVIKRLEEALEIAEDGNKLK-------EA 68 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~-------~~ 68 (164)
+..|...|.+++|++.+.+..+. ++...+.+..+...+...+.. +-..++-.-.+..+|..+... ..
T Consensus 511 i~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~ 590 (877)
T KOG2063|consen 511 IELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEA 590 (877)
T ss_pred HHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhh
Confidence 45677888888888888888773 344445555555555566655 566666676777666543110 00
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
...-...-.-|+.....+-++.++++++..+...
T Consensus 591 ~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~ 624 (877)
T KOG2063|consen 591 ESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT 624 (877)
T ss_pred ccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc
Confidence 1111122334567778888899999988876553
No 475
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=70.74 E-value=36 Score=24.37 Aligned_cols=110 Identities=11% Similarity=0.033 Sum_probs=61.5
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHH---HHcCCc----HHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPL--SFEALFENALLM---DRCGEG----EAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~---~~~~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
+.+...++|++=...+.+..+.... ..+..+..+... +..... ..-...++.-++..|+ +.-+++
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~------Sy~A~L 81 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPK------SYHAHL 81 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCC------ChHHHH
Confidence 3567788888888888887754332 111112222111 111111 1356666777778887 455555
Q ss_pred HHHHHHHHc----------------------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 74 IMAQIKFLQ----------------------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 74 ~la~~~~~~----------------------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
.+|..+... .-.+.|...+.+++..+|+...+...+..+-...|.
T Consensus 82 a~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 82 AMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 555554322 135567777778888888877666555444444443
No 476
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.36 E-value=13 Score=21.04 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=6.6
Q ss_pred CCcHHHHHHHHHHHh
Q 031170 43 GEGEAVIKRLEEALE 57 (164)
Q Consensus 43 ~~~~~A~~~~~~a~~ 57 (164)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 477
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=69.57 E-value=19 Score=23.07 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=22.6
Q ss_pred HHHHHHHHcC-CcHHHHHHHHHHHhhccc
Q 031170 34 ENALLMDRCG-EGEAVIKRLEEALEIAED 61 (164)
Q Consensus 34 ~la~~~~~~~-~~~~A~~~~~~a~~~~~~ 61 (164)
.+|..+...| +.++|..+|-+|+..+|.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 5777778888 788888888888888876
No 478
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=68.84 E-value=33 Score=23.18 Aligned_cols=49 Identities=12% Similarity=-0.023 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CC--cHHHHHHHHHHHhhc
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRC-----GE--GEAVIKRLEEALEIA 59 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----~~--~~~A~~~~~~a~~~~ 59 (164)
++...|++.|..+-. .+++++...+|.++..- ++ ..+|..++.++.+..
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 455666676666655 45666666666655422 22 456777777777664
No 479
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=68.36 E-value=49 Score=24.94 Aligned_cols=53 Identities=19% Similarity=0.038 Sum_probs=37.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC-----HHHHHHHHHH--HHHcCCcHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS-----FEALFENALL--MDRCGEGEAVIKRLEE 54 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~--~~~~~~~~~A~~~~~~ 54 (164)
++.++..++|..|...|+++....+.. ...+..+..+ +-..-++++|.+.+++
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345778899999999999999886422 2334444444 4466688899999985
No 480
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=67.81 E-value=45 Score=24.38 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=51.3
Q ss_pred HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170 38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 117 (164)
-++..|+...|..+ .+-.++ |+ ...|...-..+...++|++=..+... ..+|-.+.--..++...|
T Consensus 186 ~li~~~~~k~A~kl-~k~Fkv-~d-------krfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 186 KLIEMGQEKQAEKL-KKEFKV-PD-------KRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHCCCHHHHHHH-HHHcCC-cH-------HHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCC
Confidence 44667777666554 333444 32 67788888889999999877665432 233344445566667788
Q ss_pred CHHHHHHHHHH
Q 031170 118 RNAEAKEEFAK 128 (164)
Q Consensus 118 ~~~~A~~~l~~ 128 (164)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 89999888887
No 481
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.29 E-value=15 Score=20.25 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=9.6
Q ss_pred HHHcCCcHHHHHHHHHHHh
Q 031170 39 MDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 39 ~~~~~~~~~A~~~~~~a~~ 57 (164)
.-+.|++++|+.+|.++++
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 18 ADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3345555555555555444
No 482
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.27 E-value=16 Score=19.38 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
....-+.+.|++++|.+++.+...
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333445566666666666655544
No 483
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=67.12 E-value=8 Score=26.75 Aligned_cols=99 Identities=18% Similarity=0.110 Sum_probs=55.3
Q ss_pred HHHHcCCcHHHHHHHHHHHhhc---cccchhhh---hhhHHHHHHHHHHHccCH-HHH-HHHHHHHHHh--CCCCchh--
Q 031170 38 LMDRCGEGEAVIKRLEEALEIA---EDGNKLKE---ARDVRFIMAQIKFLQKNV-DEA-LKSYQELEIE--DPNDFRP-- 105 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~---~~~~~~~la~~~~~~~~~-~~A-~~~~~~~~~~--~p~~~~~-- 105 (164)
-.+..|+++.|++....+|+.+ |+...... ..+-....+......|.. +.. ...+..+... -|+...+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 4578899999999999999976 32211100 111122234444455542 111 2222332221 1333333
Q ss_pred hhhHHHHHH---------hcCCHHHHHHHHHHHHhhCCCc
Q 031170 106 YFCKGMIYS---------LLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 106 ~~~~~~~~~---------~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+-..|..+. ..++...|+.+|++++.++|+-
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 334455552 3467789999999999999885
No 484
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=66.49 E-value=18 Score=31.19 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=7.3
Q ss_pred cCCchHHHHHHHHH
Q 031170 8 MGKTQDARNVFEEI 21 (164)
Q Consensus 8 ~~~~~~A~~~~~~~ 21 (164)
.|+|++|+..+.++
T Consensus 893 L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 893 LKRYEDALSHLSEC 906 (1265)
T ss_pred HHHHHHHHHHHHHc
Confidence 45555555555443
No 485
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=66.20 E-value=36 Score=25.57 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhc-cccc--hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIA-EDGN--KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
+-.+|++.++++-+...++-..... |+-. ........++.+|.+|.-..++.+|...+..+....|.
T Consensus 183 L~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 183 LFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3358899999888876665443311 1100 00012456778999999999999999999999888776
No 486
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=65.98 E-value=53 Score=24.48 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=60.7
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHH--HHHHHhCCCCchhhhhHHHHH
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSY--QELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--~~~~~~~p~~~~~~~~~~~~~ 113 (164)
|.++....+|..|..+|-++++-+..-+....-...+..+-.|-+..+..++--..+ ..+++....+.++....+..+
T Consensus 216 GIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~ 295 (411)
T KOG1463|consen 216 GILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAF 295 (411)
T ss_pred cceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHh
Confidence 344555578999999999998876554332111222233444455555555443333 456665566677777777766
Q ss_pred Hh--cCCHHHHHHHHHHHHhhCCC
Q 031170 114 SL--LDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 114 ~~--~~~~~~A~~~l~~~~~~~p~ 135 (164)
.. +.+++.|+..|..-+..+|-
T Consensus 296 ~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 296 GNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred cCCcHHHHHHHHHHhHHHHhcChH
Confidence 55 56777788777777766654
No 487
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.84 E-value=54 Score=24.49 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCCHHHH---HHHHHHHHHcCCcHHHHHHHHHHHhhccccch--------------------------
Q 031170 14 ARNVFEEILAGNPLSFEAL---FENALLMDRCGEGEAVIKRLEEALEIAEDGNK-------------------------- 64 (164)
Q Consensus 14 A~~~~~~~l~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 64 (164)
+...|++..+.-|+...+. ..-|.+++-.++|.+....|.-+-.......+
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 3455666666666655543 24678888889998887766544332211111
Q ss_pred -hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170 65 -LKEARDVRFIMAQIKFLQKNVDEALKSYQELE 96 (164)
Q Consensus 65 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 96 (164)
..+..-+.+.+|.-|...+|++.|.--|.++.
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan 152 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRAN 152 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHH
Confidence 11123445567888888888887776666654
No 488
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=65.59 E-value=53 Score=24.35 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
....-+|+..++.++..+|.+....+.+..+|...|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 344568899999999999999999999999999999999999988755
No 489
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=65.02 E-value=83 Score=26.36 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=83.6
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH--HH-HHccCHH
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ--IK-FLQKNVD 86 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~--~~-~~~~~~~ 86 (164)
.-+.=+..++.-+.+++.+...+..+..++...|+.++-...-.++-.+.|. ++..|..... ++ -..++..
T Consensus 94 ~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl------~~~lWl~Wl~d~~~mt~s~~~~ 167 (881)
T KOG0128|consen 94 GGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPL------PPHLWLEWLKDELSMTQSEERK 167 (881)
T ss_pred cchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHhhccCcchh
Confidence 4445577788888888888888888888999999998877777777777776 5556653322 22 2236777
Q ss_pred HHHHHHHHHHHhCCCCchhhhhHHHHHHh-------cCCHHHHHHHHHHHHhhCCCc
Q 031170 87 EALKSYQELEIEDPNDFRPYFCKGMIYSL-------LDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+...|++++.. -+++..|.-.+..... .++++.....|.+++......
T Consensus 168 ~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~ 223 (881)
T KOG0128|consen 168 EVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSH 223 (881)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhh
Confidence 888888888864 6666666655554443 466777888888887664433
No 490
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=64.81 E-value=4.3 Score=25.31 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=38.7
Q ss_pred hhhhcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGEGEAVIKRLE 53 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~ 53 (164)
.+...+.++..+.+++.++..+ ..++..+..++.+|.+.+++++...+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3455678888889999999765 4558888899999999988888888777
No 491
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.73 E-value=20 Score=26.95 Aligned_cols=15 Identities=7% Similarity=-0.123 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHcc
Q 031170 69 RDVRFIMAQIKFLQK 83 (164)
Q Consensus 69 ~~~~~~la~~~~~~~ 83 (164)
+..|+.+|.+++..|
T Consensus 350 PetWv~vAEa~I~LG 364 (404)
T PF12753_consen 350 PETWVDVAEAMIDLG 364 (404)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhh
Confidence 445555555555444
No 492
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.67 E-value=49 Score=23.73 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----------------------CcHHHHHHHHHHHhhccc
Q 031170 13 DARNVFEEILAGNPLSFEALFENALLMDRCG----------------------EGEAVIKRLEEALEIAED 61 (164)
Q Consensus 13 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~a~~~~~~ 61 (164)
.-...++.-++..|++..++..+|..+.... -.+.|...+.+++.++|.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr 131 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPR 131 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567778888889999999988887765333 356788889999999998
No 493
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.65 E-value=72 Score=25.57 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=54.2
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 87 (164)
....+.+....+.-+.........++..+..+...+..+.|-.+|++.+...|+ ...+..|.-+...|-...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 92 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--------EARYEYARRLYNTGLAKD 92 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--------chHHHHHHHHHhhhhhhH
Confidence 344555555665555555556667777888888888889999999999888875 344555666666666666
Q ss_pred HHHHHH
Q 031170 88 ALKSYQ 93 (164)
Q Consensus 88 A~~~~~ 93 (164)
|...+.
T Consensus 93 ~~~~~~ 98 (578)
T PRK15490 93 AQLILK 98 (578)
T ss_pred HHHHHH
Confidence 666665
No 494
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.64 E-value=13 Score=27.57 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=30.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCchhhhhHHHHHHhcCCHHH
Q 031170 72 RFIMAQIKFLQKNVDEALKSYQELEIEDP--------NDFRPYFCKGMIYSLLDRNAE 121 (164)
Q Consensus 72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~ 121 (164)
++..|+-.+.++++++|...|..+..+.. ....+++..|..+++.++...
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776655422 234566666776666555443
No 495
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.22 E-value=17 Score=27.27 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC------------HHHHHHHHHHHHhh
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR------------NAEAKEEFAKYRQL 132 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------------~~~A~~~l~~~~~~ 132 (164)
-..+|+++++++.. ..+|..|..+|.++..+|+ +.+|..++.+|-..
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 35677888887765 5677788888887777655 55666666666443
No 496
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=64.18 E-value=47 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG 24 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~ 24 (164)
+|++..+.++|++.+....+++..
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~ 30 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKT 30 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhh
Confidence 366778889999999999999886
No 497
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=63.33 E-value=20 Score=19.81 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=9.2
Q ss_pred HHHcCCcHHHHHHHHHHHh
Q 031170 39 MDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 39 ~~~~~~~~~A~~~~~~a~~ 57 (164)
.-..|++++|+.+|.++++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 16 EDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3344555555555544444
No 498
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=62.71 E-value=8.1 Score=18.02 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=13.3
Q ss_pred hhhHHHHHHhcCC---HHHHHHHHHHHHhh
Q 031170 106 YFCKGMIYSLLDR---NAEAKEEFAKYRQL 132 (164)
Q Consensus 106 ~~~~~~~~~~~~~---~~~A~~~l~~~~~~ 132 (164)
.+.+|+++..... ..+++..|...++.
T Consensus 4 ~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 4 QFNYAWGLVKSNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4455555555333 34455555555443
No 499
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.23 E-value=20 Score=29.55 Aligned_cols=132 Identities=19% Similarity=0.159 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH---HHccCHHHHHHHHHHHHHhC-CCCc
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK---FLQKNVDEALKSYQELEIED-PNDF 103 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~~~~~~-p~~~ 103 (164)
.++....+-..|....+|+.-+.+.+.+-++ |+.-+......+.+..+..+ ...||-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3556667777788888888877777664443 43111111111212122222 25688999999888887654 4456
Q ss_pred hhhhhHHHHHHh---------cCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccccchhhh
Q 031170 104 RPYFCKGMIYSL---------LDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFGTNDDIK 160 (164)
Q Consensus 104 ~~~~~~~~~~~~---------~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (164)
+.+..-|.+|.. .+..+.|+++|+++....|..+.-..+..+....-+.|.....++
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq 344 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQ 344 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHH
Confidence 666677777765 466788999999999999987544444444455556666555443
No 500
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=62.21 E-value=35 Score=21.12 Aligned_cols=82 Identities=18% Similarity=0.025 Sum_probs=52.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH----HHh---hccccc--------hh-hhhhhHHHHHHHHHHHcc
Q 031170 20 EILAGNPLSFEALFENALLMDRCGEGEAVIKRLEE----ALE---IAEDGN--------KL-KEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 20 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----a~~---~~~~~~--------~~-~~~~~~~~~la~~~~~~~ 83 (164)
.+...+|.++.+|-.++.-.+..|+.-.|-.+-+. .++ .+..++ .+ .....+...|+......|
T Consensus 27 ~vaa~~P~ss~aWA~LAe~al~~g~~v~AYAyARTGYHRGLD~LRr~GWkG~GPVPw~HePNrGfLRal~aLa~AA~~IG 106 (129)
T PF11349_consen 27 EVAAAHPASSLAWAALAEEALAAGRPVTAYAYARTGYHRGLDQLRRNGWKGHGPVPWSHEPNRGFLRALAALARAAQAIG 106 (129)
T ss_pred HHHHHCCCchHHHHHHHHHHHhCCCchhhhhhhhccccccHHHHHHCCCCCCCCCCCccCCccHHHHHHHHHHHHHHHhC
Confidence 45567899999999999888888876666554332 222 121111 00 113556667788888888
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 031170 84 NVDEALKSYQELEIEDPN 101 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~ 101 (164)
+.+++..|.+-....+|.
T Consensus 107 E~dE~~Rc~~~L~Dsdp~ 124 (129)
T PF11349_consen 107 ETDEYDRCRQFLRDSDPE 124 (129)
T ss_pred ChhHHHHHHHHHHhCCHH
Confidence 888888887766666554
Done!