Query 031170
Match_columns 164
No_of_seqs 195 out of 1630
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 16:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ga2_A E3 SUMO-protein ligase 99.9 6.9E-26 2.4E-30 144.1 8.8 131 1-137 3-134 (150)
2 3vtx_A MAMA; tetratricopeptide 99.9 4E-24 1.4E-28 139.5 16.1 130 1-136 11-140 (184)
3 4gyw_A UDP-N-acetylglucosamine 99.9 2.6E-24 9E-29 166.0 17.1 148 1-154 15-162 (723)
4 2pl2_A Hypothetical conserved 99.9 6.3E-24 2.2E-28 142.6 15.2 128 2-136 12-150 (217)
5 2pl2_A Hypothetical conserved 99.9 6.7E-24 2.3E-28 142.4 14.6 146 1-153 45-201 (217)
6 3gyz_A Chaperone protein IPGC; 99.9 2.7E-24 9.2E-29 136.8 7.9 123 8-136 15-137 (151)
7 4gco_A Protein STI-1; structur 99.9 6E-23 2.1E-27 126.8 12.8 114 20-139 4-117 (126)
8 3vtx_A MAMA; tetratricopeptide 99.9 7.6E-23 2.6E-27 133.4 14.0 130 1-136 45-174 (184)
9 2h6f_A Protein farnesyltransfe 99.9 4.1E-23 1.4E-27 149.2 13.4 140 2-147 104-244 (382)
10 4i17_A Hypothetical protein; T 99.9 2E-22 6.9E-27 135.6 15.7 128 2-135 14-149 (228)
11 3urz_A Uncharacterized protein 99.9 9.7E-23 3.3E-27 135.9 13.1 129 2-136 11-190 (208)
12 4i17_A Hypothetical protein; T 99.9 1.3E-22 4.4E-27 136.6 12.5 143 1-143 48-220 (228)
13 4gco_A Protein STI-1; structur 99.9 2E-22 6.9E-27 124.4 12.0 107 1-113 19-125 (126)
14 2vgx_A Chaperone SYCD; alterna 99.9 2.3E-22 7.9E-27 127.5 11.3 119 14-138 6-124 (148)
15 3qky_A Outer membrane assembly 99.9 5.5E-21 1.9E-25 131.2 16.0 132 2-136 22-181 (261)
16 2h6f_A Protein farnesyltransfe 99.9 9.7E-22 3.3E-26 142.1 12.5 136 1-142 137-279 (382)
17 2fo7_A Synthetic consensus TPR 99.9 8.7E-21 3E-25 116.7 15.0 130 1-136 7-136 (136)
18 4ga2_A E3 SUMO-protein ligase 99.9 9.9E-22 3.4E-26 124.8 10.9 112 1-118 37-149 (150)
19 2e2e_A Formate-dependent nitri 99.9 2.8E-21 9.7E-26 125.4 12.6 128 4-137 19-149 (177)
20 4gyw_A UDP-N-acetylglucosamine 99.9 1.1E-21 3.6E-26 151.6 12.3 130 1-136 49-178 (723)
21 2q7f_A YRRB protein; TPR, prot 99.9 1.5E-20 5.3E-25 126.8 16.3 129 2-136 64-192 (243)
22 3as5_A MAMA; tetratricopeptide 99.9 7.4E-21 2.5E-25 123.1 13.9 129 2-136 15-143 (186)
23 2xcb_A PCRH, regulatory protei 99.9 1.6E-21 5.5E-26 122.5 10.2 118 15-138 4-121 (142)
24 3as5_A MAMA; tetratricopeptide 99.9 1.8E-20 6E-25 121.3 14.7 130 1-136 48-177 (186)
25 1w3b_A UDP-N-acetylglucosamine 99.9 1.5E-20 5.2E-25 135.4 15.6 129 2-136 74-202 (388)
26 2q7f_A YRRB protein; TPR, prot 99.9 1.2E-20 4.2E-25 127.3 13.9 132 1-138 29-160 (243)
27 2vq2_A PILW, putative fimbrial 99.9 2.6E-20 8.8E-25 124.1 15.1 129 2-136 15-146 (225)
28 3hym_B Cell division cycle pro 99.9 2.8E-20 9.6E-25 130.5 15.7 136 2-137 166-304 (330)
29 3uq3_A Heat shock protein STI1 99.9 1.4E-20 4.8E-25 127.9 13.6 137 1-137 44-207 (258)
30 3uq3_A Heat shock protein STI1 99.9 1.5E-20 5.2E-25 127.7 13.7 130 1-136 85-246 (258)
31 4eqf_A PEX5-related protein; a 99.9 2.7E-20 9.2E-25 133.0 15.2 136 2-137 106-281 (365)
32 4abn_A Tetratricopeptide repea 99.9 5.7E-21 2E-25 141.6 12.0 126 2-134 109-252 (474)
33 2ho1_A Type 4 fimbrial biogene 99.9 2.8E-20 9.7E-25 126.4 14.6 129 2-136 44-174 (252)
34 1w3b_A UDP-N-acetylglucosamine 99.9 3.7E-20 1.3E-24 133.3 15.9 127 4-136 212-338 (388)
35 2ho1_A Type 4 fimbrial biogene 99.8 6.9E-20 2.4E-24 124.5 15.8 131 1-137 77-209 (252)
36 1hh8_A P67PHOX, NCF-2, neutrop 99.8 6.9E-20 2.4E-24 121.8 15.4 126 2-136 13-154 (213)
37 4abn_A Tetratricopeptide repea 99.8 1.1E-20 3.6E-25 140.2 12.5 136 1-143 143-298 (474)
38 3qky_A Outer membrane assembly 99.8 1.3E-20 4.5E-25 129.3 11.8 134 1-137 58-229 (261)
39 3u4t_A TPR repeat-containing p 99.8 3.4E-20 1.1E-24 127.3 13.6 133 2-137 10-142 (272)
40 2vq2_A PILW, putative fimbrial 99.8 8.3E-20 2.9E-24 121.7 15.1 130 1-136 48-181 (225)
41 2pzi_A Probable serine/threoni 99.8 4.2E-21 1.4E-25 147.9 9.8 128 2-136 440-567 (681)
42 3hym_B Cell division cycle pro 99.8 8.7E-20 3E-24 128.0 15.7 129 2-136 63-192 (330)
43 4eqf_A PEX5-related protein; a 99.8 2.4E-20 8.3E-25 133.2 13.0 129 2-136 184-314 (365)
44 2yhc_A BAMD, UPF0169 lipoprote 99.8 7.5E-20 2.6E-24 123.2 14.6 133 2-137 11-181 (225)
45 1fch_A Peroxisomal targeting s 99.8 1.4E-19 4.7E-24 129.1 16.3 136 2-137 105-285 (368)
46 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.3E-19 7.9E-24 123.1 16.9 130 2-137 50-249 (275)
47 1fch_A Peroxisomal targeting s 99.8 8.9E-20 3E-24 130.0 14.4 124 7-136 193-318 (368)
48 3ieg_A DNAJ homolog subfamily 99.8 1.1E-19 3.6E-24 128.7 14.4 129 2-136 10-153 (359)
49 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.7E-20 1.6E-24 126.5 12.1 130 2-137 12-145 (275)
50 1a17_A Serine/threonine protei 99.8 1.5E-19 5.2E-24 115.4 13.7 127 1-133 19-147 (166)
51 3ieg_A DNAJ homolog subfamily 99.8 2.1E-19 7.2E-24 127.2 15.5 132 1-138 43-189 (359)
52 3qou_A Protein YBBN; thioredox 99.8 1E-19 3.5E-24 126.9 13.4 129 2-136 124-252 (287)
53 3gyz_A Chaperone protein IPGC; 99.8 7.7E-20 2.6E-24 116.1 11.6 97 1-103 42-138 (151)
54 2vsy_A XCC0866; transferase, g 99.8 2.8E-19 9.7E-24 135.0 16.1 130 1-136 29-161 (568)
55 3upv_A Heat shock protein STI1 99.8 2E-19 6.9E-24 110.5 12.4 102 26-133 1-102 (126)
56 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.3E-19 7.7E-24 120.9 13.1 136 1-136 47-217 (225)
57 3u4t_A TPR repeat-containing p 99.8 2.6E-19 8.9E-24 122.9 13.2 130 1-137 43-176 (272)
58 3upv_A Heat shock protein STI1 99.8 2.6E-19 8.8E-24 110.0 11.7 107 2-114 11-123 (126)
59 2y4t_A DNAJ homolog subfamily 99.8 9.1E-19 3.1E-23 127.9 16.3 129 2-136 33-176 (450)
60 3mkr_A Coatomer subunit epsilo 99.8 6.1E-19 2.1E-23 123.2 14.7 129 2-136 137-268 (291)
61 3cv0_A Peroxisome targeting si 99.8 3.4E-19 1.2E-23 124.8 13.5 126 4-135 147-272 (327)
62 2r5s_A Uncharacterized protein 99.8 1E-19 3.4E-24 118.2 10.0 128 2-136 13-141 (176)
63 3sz7_A HSC70 cochaperone (SGT) 99.8 3.6E-19 1.2E-23 114.2 12.4 105 26-136 8-112 (164)
64 2vsy_A XCC0866; transferase, g 99.8 4.3E-19 1.5E-23 134.0 14.8 125 8-138 2-126 (568)
65 2xcb_A PCRH, regulatory protei 99.8 2.6E-19 8.9E-24 112.4 11.2 106 2-113 25-130 (142)
66 2lni_A Stress-induced-phosphop 99.8 4.9E-19 1.7E-23 108.9 12.1 106 25-136 12-117 (133)
67 1p5q_A FKBP52, FK506-binding p 99.8 4.7E-19 1.6E-23 126.1 13.5 126 1-132 153-294 (336)
68 2vgx_A Chaperone SYCD; alterna 99.8 3.4E-19 1.2E-23 112.8 11.1 99 2-106 28-126 (148)
69 3sz7_A HSC70 cochaperone (SGT) 99.8 8E-19 2.7E-23 112.6 12.7 109 1-115 17-125 (164)
70 1qqe_A Vesicular transport pro 99.8 4.2E-19 1.4E-23 124.0 12.2 136 1-136 83-232 (292)
71 1p5q_A FKBP52, FK506-binding p 99.8 3.1E-20 1.1E-24 132.2 6.5 138 7-144 125-271 (336)
72 2vyi_A SGTA protein; chaperone 99.8 9E-19 3.1E-23 107.2 12.2 106 25-136 8-113 (131)
73 2pzi_A Probable serine/threoni 99.8 3.8E-19 1.3E-23 137.1 12.3 126 6-138 402-535 (681)
74 3fp2_A TPR repeat-containing p 99.8 1.4E-18 4.7E-23 129.5 14.9 129 2-137 250-378 (537)
75 2xpi_A Anaphase-promoting comp 99.8 2.7E-18 9.1E-23 129.6 16.6 135 2-136 448-583 (597)
76 4gcn_A Protein STI-1; structur 99.8 5.8E-19 2E-23 109.0 10.6 100 30-135 9-115 (127)
77 3mkr_A Coatomer subunit epsilo 99.8 2.2E-18 7.6E-23 120.4 14.6 126 2-138 108-235 (291)
78 2y4t_A DNAJ homolog subfamily 99.8 2.2E-18 7.7E-23 125.9 15.0 134 3-136 185-362 (450)
79 1wao_1 Serine/threonine protei 99.8 1.9E-19 6.6E-24 133.6 9.4 130 1-136 12-154 (477)
80 1hxi_A PEX5, peroxisome target 99.8 5.3E-19 1.8E-23 108.2 9.7 100 31-136 19-118 (121)
81 3fp2_A TPR repeat-containing p 99.8 1.7E-18 5.9E-23 128.9 13.6 130 1-136 282-411 (537)
82 4gcn_A Protein STI-1; structur 99.8 8.9E-19 3.1E-23 108.1 10.1 104 1-105 14-118 (127)
83 3cv0_A Peroxisome targeting si 99.8 1.3E-18 4.5E-23 121.8 12.1 97 2-104 28-124 (327)
84 1hxi_A PEX5, peroxisome target 99.8 2.4E-18 8.1E-23 105.3 10.9 97 2-104 24-120 (121)
85 2xpi_A Anaphase-promoting comp 99.8 8.3E-18 2.8E-22 126.9 16.1 127 4-136 348-474 (597)
86 3q49_B STIP1 homology and U bo 99.8 6.9E-18 2.4E-22 104.7 13.1 107 23-135 3-109 (137)
87 1qqe_A Vesicular transport pro 99.8 2.3E-18 7.9E-23 120.2 12.0 135 2-136 44-191 (292)
88 2fbn_A 70 kDa peptidylprolyl i 99.8 1.9E-18 6.5E-23 114.0 10.9 116 2-123 45-176 (198)
89 3rkv_A Putative peptidylprolyl 99.8 8.1E-18 2.8E-22 107.6 13.4 104 28-137 10-131 (162)
90 1na0_A Designed protein CTPR3; 99.8 1.1E-17 3.7E-22 101.5 13.0 107 25-137 4-111 (125)
91 2fbn_A 70 kDa peptidylprolyl i 99.8 5.5E-19 1.9E-23 116.6 7.7 141 5-145 14-164 (198)
92 2gw1_A Mitochondrial precursor 99.8 2.8E-18 9.7E-23 126.9 12.3 135 2-136 345-482 (514)
93 2gw1_A Mitochondrial precursor 99.8 4.9E-18 1.7E-22 125.7 13.2 132 1-138 310-450 (514)
94 2kck_A TPR repeat; tetratricop 99.8 4.7E-18 1.6E-22 101.4 10.8 107 24-136 1-110 (112)
95 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 2.5E-19 8.4E-24 132.4 6.1 137 7-143 246-391 (457)
96 1elw_A TPR1-domain of HOP; HOP 99.8 1.1E-17 3.6E-22 100.7 12.3 102 29-136 4-105 (118)
97 2xev_A YBGF; tetratricopeptide 99.8 1.1E-17 3.8E-22 102.7 12.5 103 31-136 4-109 (129)
98 2lni_A Stress-induced-phosphop 99.8 1.7E-17 5.9E-22 101.9 13.2 112 1-118 22-133 (133)
99 3urz_A Uncharacterized protein 99.8 1.7E-17 5.7E-22 110.5 14.0 105 28-138 3-123 (208)
100 2vyi_A SGTA protein; chaperone 99.8 2E-17 6.7E-22 101.1 12.6 112 2-119 19-130 (131)
101 3rkv_A Putative peptidylprolyl 99.8 1.7E-18 5.9E-23 110.8 8.1 108 2-115 18-144 (162)
102 2hr2_A Hypothetical protein; a 99.8 3.5E-18 1.2E-22 108.3 9.3 97 2-104 18-137 (159)
103 2hr2_A Hypothetical protein; a 99.8 9.7E-18 3.3E-22 106.2 11.2 110 29-138 11-137 (159)
104 3q49_B STIP1 homology and U bo 99.8 6.3E-18 2.1E-22 104.8 10.0 95 1-101 15-109 (137)
105 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 1.2E-17 4E-22 123.4 12.3 118 2-125 275-407 (457)
106 3k9i_A BH0479 protein; putativ 99.8 2.9E-18 9.8E-23 104.2 7.3 95 7-107 2-99 (117)
107 2dba_A Smooth muscle cell asso 99.8 9.1E-17 3.1E-21 100.5 14.3 113 23-138 22-134 (148)
108 2c2l_A CHIP, carboxy terminus 99.7 2.4E-18 8.3E-23 119.6 7.6 130 1-138 10-170 (281)
109 2if4_A ATFKBP42; FKBP-like, al 99.7 2.2E-18 7.6E-23 122.7 7.4 129 2-136 186-332 (338)
110 2xev_A YBGF; tetratricopeptide 99.7 6.7E-17 2.3E-21 99.1 12.9 113 2-117 9-124 (129)
111 1elw_A TPR1-domain of HOP; HOP 99.7 1.4E-16 4.9E-21 95.6 13.9 106 2-113 11-116 (118)
112 3edt_B KLC 2, kinesin light ch 99.7 1.4E-17 4.7E-22 114.2 10.2 134 1-134 49-200 (283)
113 2ond_A Cleavage stimulation fa 99.7 1.6E-16 5.5E-21 111.6 15.8 119 12-136 81-202 (308)
114 1na0_A Designed protein CTPR3; 99.7 2.4E-16 8.4E-21 95.4 14.6 110 2-117 16-125 (125)
115 2r5s_A Uncharacterized protein 99.7 2.2E-17 7.5E-22 107.1 10.4 124 1-131 46-172 (176)
116 2dba_A Smooth muscle cell asso 99.7 6.3E-17 2.2E-21 101.2 11.9 107 2-114 35-144 (148)
117 2ond_A Cleavage stimulation fa 99.7 8.5E-17 2.9E-21 113.0 13.9 125 2-132 106-232 (308)
118 3ulq_A Response regulator aspa 99.7 2.7E-17 9.2E-22 118.5 11.2 135 1-135 149-296 (383)
119 3ulq_A Response regulator aspa 99.7 3.6E-17 1.2E-21 117.8 11.3 131 2-132 110-253 (383)
120 1elr_A TPR2A-domain of HOP; HO 99.7 4.9E-17 1.7E-21 99.5 10.3 98 3-100 12-110 (131)
121 3edt_B KLC 2, kinesin light ch 99.7 3.9E-17 1.3E-21 112.0 10.8 127 1-133 91-282 (283)
122 3nf1_A KLC 1, kinesin light ch 99.7 2.1E-17 7.1E-22 115.0 9.2 135 1-135 117-310 (311)
123 2ifu_A Gamma-SNAP; membrane fu 99.7 4.9E-17 1.7E-21 114.2 10.8 133 2-136 83-227 (307)
124 3q15_A PSP28, response regulat 99.7 6.1E-17 2.1E-21 116.5 11.1 135 1-135 147-293 (378)
125 4g1t_A Interferon-induced prot 99.7 1.5E-16 5E-21 117.1 13.1 143 1-143 57-215 (472)
126 1ihg_A Cyclophilin 40; ppiase 99.7 4.5E-17 1.5E-21 117.4 10.1 117 2-124 230-362 (370)
127 3ro3_A PINS homolog, G-protein 99.7 3.9E-17 1.3E-21 103.2 8.7 135 1-135 15-161 (164)
128 1a17_A Serine/threonine protei 99.7 5.2E-16 1.8E-20 98.8 13.9 105 28-138 12-116 (166)
129 3nf1_A KLC 1, kinesin light ch 99.7 4.7E-17 1.6E-21 113.1 9.2 132 1-132 33-182 (311)
130 1ouv_A Conserved hypothetical 99.7 8.9E-16 3.1E-20 105.6 15.2 122 1-134 12-145 (273)
131 1elr_A TPR2A-domain of HOP; HO 99.7 2.7E-16 9.4E-21 96.1 11.3 103 27-135 2-111 (131)
132 3qou_A Protein YBBN; thioredox 99.7 9.4E-17 3.2E-21 111.9 10.1 125 1-131 157-283 (287)
133 3k9i_A BH0479 protein; putativ 99.7 6.1E-17 2.1E-21 98.2 8.0 96 41-142 2-100 (117)
134 1zu2_A Mitochondrial import re 99.7 7E-17 2.4E-21 102.1 8.1 92 6-103 13-125 (158)
135 3u3w_A Transcriptional activat 99.7 2.7E-16 9.2E-21 109.6 11.9 132 2-133 122-267 (293)
136 2c2l_A CHIP, carboxy terminus 99.7 2.6E-16 8.8E-21 109.4 11.4 105 26-136 1-105 (281)
137 2ifu_A Gamma-SNAP; membrane fu 99.7 7.9E-17 2.7E-21 113.2 8.6 134 2-136 43-188 (307)
138 2e2e_A Formate-dependent nitri 99.7 7.6E-16 2.6E-20 99.6 12.2 100 1-106 50-152 (177)
139 2qfc_A PLCR protein; TPR, HTH, 99.7 5.2E-16 1.8E-20 108.2 12.1 132 2-133 122-267 (293)
140 3gw4_A Uncharacterized protein 99.7 3.5E-16 1.2E-20 102.8 10.6 135 1-135 32-179 (203)
141 4f3v_A ESX-1 secretion system 99.7 2.4E-16 8.3E-21 108.8 9.6 136 2-143 109-247 (282)
142 4g1t_A Interferon-induced prot 99.7 9E-16 3.1E-20 112.8 13.3 126 5-136 223-367 (472)
143 2kck_A TPR repeat; tetratricop 99.7 5.9E-16 2E-20 92.1 10.1 99 1-103 12-111 (112)
144 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2.1E-15 7E-20 100.0 13.3 122 1-134 43-174 (213)
145 2qfc_A PLCR protein; TPR, HTH, 99.7 7.3E-15 2.5E-19 102.4 16.3 133 2-134 82-227 (293)
146 3q15_A PSP28, response regulat 99.7 3.3E-16 1.1E-20 112.7 9.7 130 2-131 108-250 (378)
147 4a1s_A PINS, partner of inscut 99.7 2.6E-16 8.8E-21 113.8 8.9 136 1-136 229-376 (411)
148 1ouv_A Conserved hypothetical 99.7 8.5E-15 2.9E-19 100.7 16.0 115 8-134 91-217 (273)
149 1ihg_A Cyclophilin 40; ppiase 99.7 2.1E-15 7.2E-20 108.6 13.1 120 29-148 223-352 (370)
150 3sf4_A G-protein-signaling mod 99.7 3.8E-16 1.3E-20 112.3 9.2 135 1-135 193-339 (406)
151 3ro2_A PINS homolog, G-protein 99.7 3E-16 1E-20 109.7 8.3 134 2-135 190-335 (338)
152 3sf4_A G-protein-signaling mod 99.7 5.7E-16 1.9E-20 111.4 9.5 131 2-132 16-176 (406)
153 2fo7_A Synthetic consensus TPR 99.7 7.9E-15 2.7E-19 89.6 13.4 101 30-136 2-102 (136)
154 4a1s_A PINS, partner of inscut 99.7 9.2E-16 3.2E-20 110.9 10.5 132 2-133 55-213 (411)
155 3dra_A Protein farnesyltransfe 99.6 7.7E-15 2.6E-19 102.9 14.8 121 12-138 50-181 (306)
156 3ro2_A PINS homolog, G-protein 99.6 2.2E-15 7.6E-20 105.3 11.9 132 2-133 12-173 (338)
157 3u3w_A Transcriptional activat 99.6 2E-15 6.9E-20 105.2 11.2 134 3-136 83-229 (293)
158 3dra_A Protein farnesyltransfe 99.6 2.4E-14 8.2E-19 100.4 15.7 145 2-152 74-235 (306)
159 1dce_A Protein (RAB geranylger 99.6 5.2E-15 1.8E-19 111.9 12.9 132 11-148 89-237 (567)
160 3rjv_A Putative SEL1 repeat pr 99.6 4E-15 1.4E-19 99.3 11.0 124 1-136 24-161 (212)
161 2kat_A Uncharacterized protein 99.6 6.3E-15 2.2E-19 88.8 10.2 86 12-103 2-87 (115)
162 2ooe_A Cleavage stimulation fa 99.6 2E-14 6.8E-19 107.7 14.0 129 2-136 328-458 (530)
163 3gw4_A Uncharacterized protein 99.6 2.7E-14 9.2E-19 93.7 13.0 129 5-133 2-137 (203)
164 1zu2_A Mitochondrial import re 99.6 2.3E-15 7.9E-20 95.2 7.3 92 40-137 13-125 (158)
165 1wao_1 Serine/threonine protei 99.6 9.2E-16 3.1E-20 113.9 6.2 111 28-144 5-115 (477)
166 3rjv_A Putative SEL1 repeat pr 99.6 2.1E-14 7.3E-19 95.7 12.3 127 2-136 57-201 (212)
167 1dce_A Protein (RAB geranylger 99.6 3.1E-14 1E-18 107.7 14.2 135 7-147 40-188 (567)
168 2if4_A ATFKBP42; FKBP-like, al 99.6 1.9E-15 6.4E-20 107.7 7.1 117 25-141 175-302 (338)
169 2ooe_A Cleavage stimulation fa 99.6 5.2E-14 1.8E-18 105.5 15.0 123 8-136 292-424 (530)
170 3q7a_A Farnesyltransferase alp 99.6 7.4E-14 2.5E-18 99.2 14.1 126 5-136 98-241 (349)
171 2l6j_A TPR repeat-containing p 99.6 9.7E-16 3.3E-20 91.4 3.6 94 28-127 3-102 (111)
172 3dss_A Geranylgeranyl transfer 99.6 2.2E-13 7.5E-18 96.3 15.7 136 6-147 40-189 (331)
173 1hz4_A MALT regulatory protein 99.6 5E-14 1.7E-18 100.8 12.7 134 2-135 21-167 (373)
174 3q7a_A Farnesyltransferase alp 99.6 1.1E-13 3.8E-18 98.3 13.8 137 7-149 66-213 (349)
175 3dss_A Geranylgeranyl transfer 99.6 1.3E-13 4.5E-18 97.4 13.8 128 11-144 90-234 (331)
176 1na3_A Designed protein CTPR2; 99.6 5.5E-14 1.9E-18 80.8 9.9 85 27-117 7-91 (91)
177 2l6j_A TPR repeat-containing p 99.6 8.8E-16 3E-20 91.6 2.2 94 1-94 10-103 (111)
178 1hz4_A MALT regulatory protein 99.5 2.1E-13 7.3E-18 97.6 11.0 133 2-134 60-205 (373)
179 3mv2_B Coatomer subunit epsilo 99.5 5.7E-13 1.9E-17 93.1 12.5 132 1-133 106-241 (310)
180 2kat_A Uncharacterized protein 99.5 1.2E-13 4.2E-18 83.1 8.0 85 46-136 2-86 (115)
181 3ma5_A Tetratricopeptide repea 99.5 1.4E-13 5E-18 81.0 7.7 73 24-102 2-74 (100)
182 2kc7_A BFR218_protein; tetratr 99.5 5.5E-14 1.9E-18 82.3 5.8 67 34-106 5-72 (99)
183 1na3_A Designed protein CTPR2; 99.5 4.3E-13 1.5E-17 76.9 8.7 77 1-83 15-91 (91)
184 2kc7_A BFR218_protein; tetratr 99.5 1.7E-13 5.9E-18 80.2 7.0 88 2-103 7-95 (99)
185 2xm6_A Protein corresponding t 99.4 5.9E-12 2E-16 93.5 14.0 115 9-135 310-435 (490)
186 1klx_A Cysteine rich protein B 99.4 5.8E-12 2E-16 78.5 11.8 113 8-134 8-128 (138)
187 3ro3_A PINS homolog, G-protein 99.4 3E-12 1E-16 80.4 10.5 106 29-134 9-120 (164)
188 2xm6_A Protein corresponding t 99.4 1.4E-11 4.8E-16 91.4 15.3 113 8-132 56-180 (490)
189 3e4b_A ALGK; tetratricopeptide 99.4 5.5E-12 1.9E-16 93.0 12.0 117 2-130 183-314 (452)
190 3ma5_A Tetratricopeptide repea 99.4 2.5E-12 8.6E-17 75.6 7.7 69 68-136 6-74 (100)
191 3n71_A Histone lysine methyltr 99.4 2.8E-12 9.5E-17 95.3 9.6 130 4-133 318-465 (490)
192 3mv2_B Coatomer subunit epsilo 99.4 9E-12 3.1E-16 87.1 11.4 126 2-136 143-286 (310)
193 4b4t_Q 26S proteasome regulato 99.4 7.6E-12 2.6E-16 91.0 11.3 131 2-132 11-164 (434)
194 3e4b_A ALGK; tetratricopeptide 99.3 1.9E-11 6.6E-16 90.1 12.5 110 9-133 231-352 (452)
195 3bee_A Putative YFRE protein; 99.3 5.9E-11 2E-15 68.9 11.1 73 25-103 2-77 (93)
196 4b4t_Q 26S proteasome regulato 99.3 3.6E-12 1.2E-16 92.7 7.2 135 1-135 61-207 (434)
197 3ly7_A Transcriptional activat 99.3 7.2E-11 2.5E-15 84.1 12.5 120 10-136 214-343 (372)
198 4f3v_A ESX-1 secretion system 99.3 3.2E-12 1.1E-16 88.3 4.8 120 7-133 18-201 (282)
199 1pc2_A Mitochondria fission pr 99.2 3.1E-10 1E-14 71.1 11.4 98 9-111 12-113 (152)
200 1klx_A Cysteine rich protein B 99.2 4.9E-10 1.7E-14 69.6 10.8 88 1-98 31-126 (138)
201 1b89_A Protein (clathrin heavy 99.1 1.1E-10 3.9E-15 85.1 7.8 113 1-136 128-240 (449)
202 3bee_A Putative YFRE protein; 99.1 6.4E-10 2.2E-14 64.4 9.0 69 68-136 5-76 (93)
203 2v5f_A Prolyl 4-hydroxylase su 99.1 1.6E-09 5.6E-14 64.0 10.7 83 28-110 4-87 (104)
204 1xi4_A Clathrin heavy chain; a 99.1 1.3E-09 4.4E-14 88.7 13.1 119 1-132 1111-1250(1630)
205 1pc2_A Mitochondria fission pr 99.0 2.1E-09 7.2E-14 67.3 9.0 91 46-142 15-110 (152)
206 3qww_A SET and MYND domain-con 99.0 1.1E-09 3.6E-14 80.4 8.8 92 7-98 310-411 (433)
207 3u64_A Protein TP_0956; tetrat 99.0 2.3E-09 8E-14 73.8 9.2 86 11-101 179-272 (301)
208 3u64_A Protein TP_0956; tetrat 99.0 2E-08 6.9E-13 69.2 13.5 109 24-136 147-273 (301)
209 1b89_A Protein (clathrin heavy 99.0 5.2E-10 1.8E-14 81.7 5.2 119 1-134 154-274 (449)
210 4e6h_A MRNA 3'-END-processing 99.0 2.1E-08 7.1E-13 77.4 14.0 134 3-136 351-503 (679)
211 4e6h_A MRNA 3'-END-processing 99.0 1.6E-08 5.5E-13 78.0 13.3 128 2-135 385-536 (679)
212 3n71_A Histone lysine methyltr 99.0 6.3E-09 2.2E-13 77.4 10.3 98 35-132 315-422 (490)
213 1xi4_A Clathrin heavy chain; a 98.9 7.3E-09 2.5E-13 84.4 11.1 112 2-136 1202-1313(1630)
214 3qwp_A SET and MYND domain-con 98.9 6.3E-09 2.2E-13 76.3 9.1 94 5-98 297-400 (429)
215 2v5f_A Prolyl 4-hydroxylase su 98.9 8.2E-09 2.8E-13 60.9 7.6 70 1-76 11-87 (104)
216 3qww_A SET and MYND domain-con 98.9 6.2E-09 2.1E-13 76.4 8.4 94 40-133 309-412 (433)
217 1nzn_A CGI-135 protein, fissio 98.8 1E-07 3.4E-12 57.7 10.7 97 10-111 16-116 (126)
218 3qwp_A SET and MYND domain-con 98.8 4.8E-08 1.6E-12 71.7 10.5 96 37-132 295-400 (429)
219 4h7y_A Dual specificity protei 98.7 1.5E-06 5.2E-11 53.9 12.8 113 23-136 7-127 (161)
220 3ly7_A Transcriptional activat 98.6 4E-07 1.4E-11 65.0 10.3 76 22-104 270-345 (372)
221 3ffl_A Anaphase-promoting comp 98.5 3.5E-07 1.2E-11 57.8 7.0 56 4-59 29-93 (167)
222 1nzn_A CGI-135 protein, fissio 98.5 1.6E-06 5.4E-11 52.5 8.5 92 44-141 16-112 (126)
223 2uy1_A Cleavage stimulation fa 98.4 1.7E-05 5.8E-10 59.2 14.4 122 12-136 196-353 (493)
224 2uy1_A Cleavage stimulation fa 98.4 5.8E-06 2E-10 61.7 11.9 119 3-129 221-380 (493)
225 3ffl_A Anaphase-promoting comp 98.3 1.3E-05 4.3E-10 50.7 10.1 101 29-129 20-148 (167)
226 4g26_A Pentatricopeptide repea 98.3 5.6E-05 1.9E-09 56.5 14.4 123 9-136 84-210 (501)
227 1y8m_A FIS1; mitochondria, unk 98.2 8.5E-05 2.9E-09 45.7 12.5 78 26-108 36-116 (144)
228 3o48_A Mitochondria fission 1 98.2 3.6E-05 1.2E-09 46.8 10.4 79 28-111 39-120 (134)
229 4g26_A Pentatricopeptide repea 98.2 0.0003 1E-08 52.6 16.7 128 4-136 35-175 (501)
230 4gns_B Protein CSD3, chitin bi 98.2 5.3E-05 1.8E-09 59.1 12.7 121 8-129 261-397 (754)
231 4h7y_A Dual specificity protei 98.1 5.9E-05 2E-09 46.9 9.3 93 5-104 23-129 (161)
232 3o48_A Mitochondria fission 1 97.9 0.00023 8E-09 43.2 10.1 75 68-142 39-117 (134)
233 1y8m_A FIS1; mitochondria, unk 97.9 0.0005 1.7E-08 42.3 11.6 75 68-142 38-116 (144)
234 4b4t_R RPN7, 26S proteasome re 97.9 0.00023 7.8E-09 52.2 10.8 100 1-100 137-239 (429)
235 1zbp_A Hypothetical protein VP 97.6 0.0027 9.1E-08 43.4 12.2 120 4-136 6-133 (273)
236 3kae_A CDC27, possible protein 97.6 0.0048 1.6E-07 39.4 13.4 92 4-100 42-145 (242)
237 3txn_A 26S proteasome regulato 97.5 0.001 3.6E-08 48.1 9.9 100 1-100 105-212 (394)
238 3mkq_B Coatomer subunit alpha; 97.5 0.0026 8.8E-08 40.8 10.6 48 5-57 15-62 (177)
239 2ff4_A Probable regulatory pro 97.5 0.0065 2.2E-07 43.9 13.8 95 38-132 124-234 (388)
240 4gns_B Protein CSD3, chitin bi 97.4 0.00059 2E-08 53.3 7.4 59 31-95 339-397 (754)
241 2ff4_A Probable regulatory pro 97.4 0.0047 1.6E-07 44.7 11.7 85 7-97 127-233 (388)
242 4b4t_P 26S proteasome regulato 97.2 0.013 4.3E-07 43.3 12.7 98 1-98 143-247 (445)
243 3mkq_A Coatomer beta'-subunit; 97.2 0.0058 2E-07 47.7 11.5 109 6-127 663-773 (814)
244 4b4t_R RPN7, 26S proteasome re 97.2 0.0027 9.3E-08 46.6 9.0 105 28-135 130-240 (429)
245 3kae_A CDC27, possible protein 97.2 0.019 6.4E-07 36.7 12.1 123 7-143 14-154 (242)
246 4b4t_P 26S proteasome regulato 97.1 0.023 8E-07 41.8 12.9 102 31-132 139-247 (445)
247 3txn_A 26S proteasome regulato 97.0 0.014 4.6E-07 42.4 11.3 100 34-133 104-211 (394)
248 4b4t_S RPN3, 26S proteasome re 97.0 0.0032 1.1E-07 47.0 8.1 129 6-136 147-303 (523)
249 1zbp_A Hypothetical protein VP 96.6 0.011 3.8E-07 40.4 7.5 58 39-102 7-64 (273)
250 1ya0_A SMG-7 transcript varian 96.5 0.033 1.1E-06 41.7 9.9 59 34-98 157-215 (497)
251 1ya0_A SMG-7 transcript varian 96.4 0.014 4.8E-07 43.6 7.7 60 2-61 159-218 (497)
252 4fhn_B Nucleoporin NUP120; pro 96.3 0.052 1.8E-06 44.7 11.0 121 5-129 822-964 (1139)
253 3mkq_A Coatomer beta'-subunit; 96.2 0.11 3.9E-06 40.5 12.2 62 68-129 680-762 (814)
254 3spa_A Mtrpol, DNA-directed RN 96.2 0.11 3.6E-06 42.4 11.7 90 4-98 136-230 (1134)
255 3spa_A Mtrpol, DNA-directed RN 96.1 0.16 5.6E-06 41.4 12.4 96 30-132 128-230 (1134)
256 4fhn_B Nucleoporin NUP120; pro 95.8 0.12 4.2E-06 42.6 10.9 94 1-95 848-964 (1139)
257 1qsa_A Protein (soluble lytic 95.7 0.14 4.9E-06 39.3 10.5 116 9-131 228-347 (618)
258 3mkq_B Coatomer subunit alpha; 95.2 0.33 1.1E-05 31.1 9.8 89 27-129 6-115 (177)
259 4b4t_S RPN3, 26S proteasome re 95.2 0.13 4.6E-06 38.5 8.4 73 29-103 231-304 (523)
260 1wy6_A Hypothetical protein ST 94.8 0.2 6.9E-06 30.8 6.9 54 38-97 100-153 (172)
261 2wpv_A GET4, UPF0363 protein Y 94.0 0.87 3E-05 31.9 9.9 128 5-132 43-217 (312)
262 1qsa_A Protein (soluble lytic 93.7 0.42 1.4E-05 36.8 8.4 119 8-133 265-411 (618)
263 4gq2_M Nucleoporin NUP120; bet 90.6 2.2 7.6E-05 34.7 9.5 90 35-134 816-928 (950)
264 3esl_A Checkpoint serine/threo 90.5 1.9 6.6E-05 28.1 7.4 80 16-100 58-146 (202)
265 3t5x_A PCI domain-containing p 89.9 1.3 4.4E-05 29.0 6.4 86 30-124 15-100 (203)
266 2wpv_A GET4, UPF0363 protein Y 89.6 4 0.00014 28.6 11.1 121 6-127 24-158 (312)
267 2ijq_A Hypothetical protein; s 89.3 2.4 8.2E-05 26.6 6.9 22 5-26 42-63 (161)
268 3ax2_A Mitochondrial import re 89.3 1.3 4.3E-05 23.9 4.9 28 34-61 22-49 (73)
269 3ax2_A Mitochondrial import re 88.7 1.2 4.2E-05 23.9 4.6 32 73-104 21-52 (73)
270 1wy6_A Hypothetical protein ST 88.7 2.4 8.1E-05 26.2 6.3 129 3-133 15-155 (172)
271 2ijq_A Hypothetical protein; s 88.5 3.2 0.00011 26.1 8.0 66 33-98 36-104 (161)
272 3lpz_A GET4 (YOR164C homolog); 88.2 5.3 0.00018 28.3 9.2 24 103-126 136-159 (336)
273 3t5v_B Nuclear mRNA export pro 87.0 3.4 0.00011 30.6 7.6 93 10-102 141-254 (455)
274 3lpz_A GET4 (YOR164C homolog); 86.9 6.5 0.00022 27.9 11.9 127 5-131 45-215 (336)
275 3t5v_B Nuclear mRNA export pro 86.2 4.3 0.00015 30.1 7.8 60 3-62 184-254 (455)
276 2rpa_A Katanin P60 ATPase-cont 85.9 0.41 1.4E-05 26.1 1.7 22 2-23 19-40 (78)
277 2wvi_A Mitotic checkpoint seri 85.8 2.4 8.1E-05 26.7 5.4 31 69-99 96-126 (164)
278 4gq2_M Nucleoporin NUP120; bet 85.6 3.4 0.00012 33.6 7.5 20 2-21 847-866 (950)
279 1om2_A Protein (mitochondrial 85.4 2.2 7.5E-05 24.2 4.7 28 34-61 25-52 (95)
280 2rpa_A Katanin P60 ATPase-cont 85.4 1 3.6E-05 24.5 3.2 27 72-98 15-41 (78)
281 2cwy_A Hypothetical protein TT 85.4 3.5 0.00012 23.3 6.2 61 35-97 7-67 (94)
282 2crb_A Nuclear receptor bindin 84.8 2.3 7.9E-05 23.9 4.4 27 31-57 17-43 (97)
283 4b4t_O 26S proteasome regulato 83.1 11 0.00038 27.2 11.1 93 5-97 86-197 (393)
284 3bu8_A Telomeric repeat-bindin 82.0 1.8 6E-05 28.6 3.7 64 36-105 121-193 (235)
285 2crb_A Nuclear receptor bindin 81.6 3.4 0.00012 23.2 4.3 27 71-97 17-43 (97)
286 3t5x_A PCI domain-containing p 81.6 6.6 0.00023 25.5 6.5 46 1-46 20-70 (203)
287 1om2_A Protein (mitochondrial 80.6 2.5 8.7E-05 23.9 3.7 32 73-104 24-55 (95)
288 2w2u_A Hypothetical P60 katani 78.3 4.6 0.00016 22.2 4.2 19 79-97 29-47 (83)
289 2cfu_A SDSA1; SDS-hydrolase, l 78.2 9.2 0.00031 29.8 7.3 49 70-118 450-498 (658)
290 3bqo_A Telomeric repeat-bindin 77.8 1.6 5.6E-05 28.3 2.6 28 35-62 123-150 (211)
291 3bu8_A Telomeric repeat-bindin 77.1 13 0.00045 24.6 7.3 39 77-115 122-160 (235)
292 3lew_A SUSD-like carbohydrate 75.9 10 0.00035 28.3 6.8 30 69-98 203-232 (495)
293 2v6y_A AAA family ATPase, P60 75.8 5.9 0.0002 21.7 4.2 15 82-96 24-38 (83)
294 2cwy_A Hypothetical protein TT 74.9 9.1 0.00031 21.5 5.0 55 2-58 8-68 (94)
295 2w2u_A Hypothetical P60 katani 74.4 6.4 0.00022 21.6 4.1 18 85-102 42-59 (83)
296 3myv_A SUSD superfamily protei 73.1 13 0.00043 27.4 6.6 51 48-98 167-219 (454)
297 2ynq_A ESSB; membrane protein, 72.6 15 0.00051 23.0 7.8 79 4-94 17-98 (161)
298 2v6y_A AAA family ATPase, P60 72.6 7.5 0.00026 21.3 4.1 44 46-103 9-52 (83)
299 3kez_A Putative sugar binding 71.4 14 0.00046 27.3 6.5 49 49-97 174-224 (461)
300 1wfd_A Hypothetical protein 15 69.8 12 0.0004 21.0 4.6 12 83-94 29-40 (93)
301 3snx_A SUSD homolog, putative 69.2 15 0.0005 27.2 6.2 30 69-98 191-220 (460)
302 3re2_A Predicted protein; meni 69.1 29 0.00098 25.2 7.2 64 33-96 239-323 (472)
303 3mcx_A SUSD superfamily protei 68.7 15 0.00052 27.1 6.3 51 48-98 179-231 (477)
304 3hdx_A SUSD homolog, SUSD supe 68.1 18 0.00062 26.7 6.6 31 68-98 196-226 (478)
305 3mv2_A Coatomer subunit alpha; 67.8 29 0.001 24.5 8.7 25 77-101 215-239 (325)
306 4a5x_A MITD1, MIT domain-conta 66.6 11 0.00038 20.8 4.0 23 36-58 23-45 (86)
307 4aez_C MAD3, mitotic spindle c 65.8 26 0.0009 23.2 9.2 47 87-133 132-180 (223)
308 4ady_A RPN2, 26S proteasome re 64.4 55 0.0019 26.9 8.8 120 3-131 463-588 (963)
309 3qnk_A Putative lipoprotein; a 64.3 22 0.00074 26.7 6.4 30 69-98 182-211 (517)
310 2cfu_A SDSA1; SDS-hydrolase, l 63.7 21 0.00073 27.8 6.4 49 29-83 449-497 (658)
311 3bqo_A Telomeric repeat-bindin 62.0 10 0.00035 24.7 3.6 40 76-115 124-163 (211)
312 3jq1_A SUSD superfamily protei 61.3 14 0.00047 27.5 4.8 49 49-97 158-208 (481)
313 3u84_A Menin; MLL, JUND, ledgf 60.0 50 0.0017 24.5 7.1 64 33-96 261-345 (550)
314 2v6x_A Vacuolar protein sortin 59.8 17 0.00059 19.8 4.0 19 40-58 24-42 (85)
315 3esl_A Checkpoint serine/threo 59.6 34 0.0011 22.3 13.2 85 50-135 58-147 (202)
316 3re2_A Predicted protein; meni 59.4 48 0.0016 24.1 10.7 63 68-130 254-323 (472)
317 3i4g_A SUSD-like carbohydrate 59.2 30 0.001 26.1 6.4 30 69-98 198-227 (528)
318 3myv_A SUSD superfamily protei 56.7 40 0.0014 24.7 6.6 30 29-58 190-219 (454)
319 4gq4_A Menin; tumor suppressor 56.1 59 0.002 24.1 7.2 28 70-97 304-331 (489)
320 2cpt_A SKD1 protein, vacuolar 55.8 18 0.00061 21.3 3.8 17 41-57 30-46 (117)
321 2ynq_A ESSB; membrane protein, 55.1 36 0.0012 21.3 7.5 86 35-129 14-99 (161)
322 3lew_A SUSD-like carbohydrate 55.0 46 0.0016 24.8 6.7 31 29-59 203-233 (495)
323 3lvg_A Clathrin heavy chain 1; 54.5 0.043 1.5E-06 41.1 -9.2 47 1-52 176-222 (624)
324 3mcx_A SUSD superfamily protei 53.8 53 0.0018 24.2 6.9 46 13-58 178-231 (477)
325 4b4t_O 26S proteasome regulato 53.1 61 0.0021 23.3 9.0 96 36-131 83-197 (393)
326 3iqu_A 14-3-3 protein sigma; s 52.5 50 0.0017 22.1 11.5 26 2-27 15-40 (236)
327 4ady_A RPN2, 26S proteasome re 52.5 47 0.0016 27.3 6.7 54 2-55 497-550 (963)
328 4aez_C MAD3, mitotic spindle c 52.5 48 0.0016 22.0 8.8 33 69-101 150-182 (223)
329 3u84_A Menin; MLL, JUND, ledgf 52.1 70 0.0024 23.7 10.7 63 68-130 276-345 (550)
330 3kez_A Putative sugar binding 52.1 47 0.0016 24.4 6.3 30 29-58 196-225 (461)
331 2yhe_A SEC-alkyl sulfatase; hy 53.7 3.8 0.00013 31.9 0.0 53 70-122 462-514 (668)
332 2br9_A 14-3-3E, 14-3-3 protein 47.6 60 0.0021 21.7 10.5 26 2-27 12-37 (234)
333 2yhe_A SEC-alkyl sulfatase; hy 51.0 4.5 0.00015 31.5 0.0 47 2-48 468-514 (668)
334 3jys_A SUSD superfamily protei 44.9 56 0.0019 24.4 5.8 49 49-97 165-222 (499)
335 3otn_A SUSD superfamily protei 43.7 37 0.0013 25.1 4.7 31 68-98 187-226 (482)
336 2o8p_A 14-3-3 domain containin 43.0 72 0.0024 21.2 14.4 59 74-132 125-197 (227)
337 2wvi_A Mitotic checkpoint seri 42.9 60 0.0021 20.3 10.9 81 49-135 43-128 (164)
338 3ubw_A 14-3-3E, 14-3-3 protein 42.5 78 0.0027 21.6 10.9 26 2-27 38-63 (261)
339 1bpo_A Protein (clathrin); cla 42.5 1E+02 0.0034 23.2 6.6 46 7-54 341-386 (494)
340 3mkr_B Coatomer subunit alpha; 40.6 94 0.0032 21.9 9.6 25 77-101 206-230 (320)
341 3ckc_A SUSD; TPR repeat, carbo 39.6 67 0.0023 23.9 5.6 50 48-97 172-231 (527)
342 1o9d_A 14-3-3-like protein C; 39.4 89 0.003 21.3 10.5 24 2-25 15-38 (260)
343 2vkj_A TM1634; membrane protei 39.0 51 0.0018 18.4 5.0 31 69-99 53-83 (106)
344 3s6n_M SurviVal motor neuron p 38.9 24 0.00083 15.8 1.9 29 27-59 4-32 (37)
345 3ihv_A SUSD homolog; NP_813570 38.8 74 0.0025 23.9 5.7 30 69-98 196-233 (535)
346 2npu_A FKBP12-rapamycin comple 37.9 64 0.0022 19.2 5.0 58 75-132 46-103 (126)
347 3qnk_A Putative lipoprotein; a 37.7 1.1E+02 0.0036 23.0 6.4 30 29-58 182-211 (517)
348 3uzd_A 14-3-3 protein gamma; s 36.8 97 0.0033 20.9 12.3 27 1-27 10-36 (248)
349 2wm9_A Dedicator of cytokinesi 35.3 1.1E+02 0.0039 22.3 6.0 19 1-19 17-35 (428)
350 3lvg_A Clathrin heavy chain 1; 35.2 40 0.0014 25.9 3.6 88 3-91 237-326 (624)
351 2oo2_A Hypothetical protein AF 34.1 61 0.0021 17.9 5.2 27 69-95 35-61 (86)
352 3hdx_A SUSD homolog, SUSD supe 32.4 59 0.002 24.0 4.3 30 29-58 197-226 (478)
353 3msv_A Nuclear import adaptor, 32.0 98 0.0033 21.8 4.8 32 11-42 148-179 (393)
354 3o10_A Sacsin; all-helical dom 31.7 79 0.0027 19.0 4.1 14 9-22 4-17 (141)
355 3snx_A SUSD homolog, putative 31.6 54 0.0018 24.2 3.9 31 28-58 190-220 (460)
356 2d2s_A Exocyst complex compone 31.2 1.2E+02 0.004 20.2 9.4 91 37-131 26-119 (235)
357 3jq1_A SUSD superfamily protei 31.1 99 0.0034 22.9 5.3 27 105-131 182-208 (481)
358 2yin_A DOCK2, dedicator of cyt 30.0 1.6E+02 0.0056 21.6 8.0 85 32-116 38-139 (436)
359 2d2s_A Exocyst complex compone 29.0 1.3E+02 0.0044 20.0 6.4 83 4-95 27-117 (235)
360 3l22_A SUSD superfamily protei 28.8 32 0.0011 25.2 2.3 28 69-96 201-228 (441)
361 2yin_A DOCK2, dedicator of cyt 28.5 1.8E+02 0.006 21.4 8.5 61 1-61 41-124 (436)
362 3fap_B FRAP, FKBP12-rapamycin 28.4 83 0.0028 17.6 4.7 57 76-132 17-73 (94)
363 3efz_A 14-3-3 protein; 14-3-3, 28.2 68 0.0023 22.0 3.6 48 85-132 168-226 (268)
364 3k66_A Beta-amyloid-like prote 26.9 1.5E+02 0.005 19.9 6.2 21 7-27 36-56 (239)
365 4gq4_A Menin; tumor suppressor 26.7 2E+02 0.0068 21.4 10.0 77 33-130 246-330 (489)
366 4a1g_A Mitotic checkpoint seri 26.5 1.2E+02 0.004 18.7 13.3 116 13-135 8-133 (152)
367 2dl1_A Spartin; SPG20, MIT, st 25.9 1.1E+02 0.0036 18.0 4.2 44 43-100 17-60 (116)
368 2uwj_G Type III export protein 25.2 1.1E+02 0.0036 17.7 7.0 75 43-129 20-94 (115)
369 3i4g_A SUSD-like carbohydrate 25.0 1.8E+02 0.006 21.9 5.7 30 29-58 198-227 (528)
370 2qx5_A Nucleoporin NIC96; mRNA 24.9 2.5E+02 0.0086 22.0 8.0 93 2-94 450-563 (661)
371 1ixm_A SPO0B, protein (sporula 24.8 84 0.0029 20.1 3.5 28 32-59 35-62 (192)
372 2e2a_A Protein (enzyme IIA); h 24.6 1.1E+02 0.0036 17.6 4.3 28 69-96 20-47 (105)
373 3jq0_A SUSD superfamily protei 24.2 1.1E+02 0.0039 22.6 4.6 29 69-97 183-219 (493)
374 1wcr_A PTS system, N, N'-diace 23.4 1.1E+02 0.0038 17.4 4.3 28 69-96 18-45 (103)
375 2g0u_A Type III secretion syst 23.2 1.1E+02 0.0037 17.2 3.7 36 85-123 32-67 (92)
376 3qtm_A Uncharacterized protein 23.0 1.1E+02 0.0039 21.1 3.8 30 11-40 101-130 (346)
No 1
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.93 E-value=6.9e-26 Score=144.05 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=122.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||.++...|++++|+..+++++...|.++.+++.+|.+|...|++++|+..|+++++++|+ +..++..+|.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGLLYE 76 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH-HHHHHhhCCCcc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE-FAKYRQLSPKKF 137 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~-l~~~~~~~p~~~ 137 (164)
..|++++|+.+|+++++.+|+++.+++.+|.++...|++++|... ++++++++|++.
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 999999999999999999999999999999999999999887665 699999999983
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=4e-24 Score=139.52 Aligned_cols=130 Identities=15% Similarity=0.276 Sum_probs=100.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|. ...++..+|.++.
T Consensus 11 lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------SAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------hHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999988 4555555666666
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..++++.|+..+.+++..+|.+..++..+|.++...|++++|+..|++++..+|.+
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 66666666666666666666666666666666666666666666666666666655
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=2.6e-24 Score=166.05 Aligned_cols=148 Identities=18% Similarity=0.107 Sum_probs=135.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+ ...++..+|.++.
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------FADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhhhhccc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSRMKLFG 154 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 154 (164)
.+|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++++|++......+...+.....+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999444333443444444443
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=6.3e-24 Score=142.57 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=96.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+ ...++..+|.++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------YLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHH
Confidence 556777778888888888888888888888888888888888888888888888877777 56677777777777
Q ss_pred c-----------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 Q-----------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
. |++++|+..|++++..+|++..+++.+|.++...|++++|+..|++++.++ .+
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~ 150 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT 150 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc
Confidence 7 777777777777777777777777777777777777777777777777766 44
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=6.7e-24 Score=142.43 Aligned_cols=146 Identities=16% Similarity=0.099 Sum_probs=130.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCcHHHHHHHHHHHhhccccchhhhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRC-----------GEGEAVIKRLEEALEIAEDGNKLKEAR 69 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~ 69 (164)
+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++++++|+ ..
T Consensus 45 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~ 118 (217)
T 2pl2_A 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YA 118 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cH
Confidence 367889999999999999999999999999999999999999 9999999999999999998 78
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhhh
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLSR 149 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~ 149 (164)
.++..+|.++...|++++|+.+|++++..+ +++.+++.+|.++...|++++|+..|++++...|++......+...+..
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 899999999999999999999999999999 8999999999999999999999999999999999994433333333433
Q ss_pred hhcc
Q 031170 150 MKLF 153 (164)
Q Consensus 150 ~~~~ 153 (164)
.+.+
T Consensus 198 ~g~~ 201 (217)
T 2pl2_A 198 KGKA 201 (217)
T ss_dssp ----
T ss_pred ccCH
Confidence 3333
No 6
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.91 E-value=2.7e-24 Score=136.78 Aligned_cols=123 Identities=18% Similarity=0.082 Sum_probs=115.0
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 87 (164)
.+++-.+-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|. ++.+|..+|.++...|++++
T Consensus 15 l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHH
Confidence 344444555677888899999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 88 ALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|+.+|++++..+|+++.+++.+|.++..+|++++|+..|++++.+.|+.
T Consensus 89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999987
No 7
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.90 E-value=6e-23 Score=126.83 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=106.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 20 EILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 20 ~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
++..++|+..+++..+|..+++.|+|++|+..|+++++.+|. +..++..+|.++..+|++++|+..|++++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 77 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLD 77 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence 455688999999999999999999999999999999999998 78999999999999999999999999999999
Q ss_pred CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchh
Q 031170 100 PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEV 139 (164)
Q Consensus 100 p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~ 139 (164)
|++..+++.+|.++..+|++++|+..|+++++++|++...
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999999999999443
No 8
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=7.6e-23 Score=133.44 Aligned_cols=130 Identities=20% Similarity=0.216 Sum_probs=126.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|...+.+++...|. ...++..+|.++.
T Consensus 45 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 45 LGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999998 7889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|++++|+.+|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999999999999999999999999999987
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=4.1e-23 Score=149.24 Aligned_cols=140 Identities=6% Similarity=0.041 Sum_probs=126.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGE-GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
|.++...|++++|+..|++++..+|++..+|..+|.++..+|+ +++|+..|+++++++|+ +..+|..+|.++.
T Consensus 104 g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999997 99999999999999998 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPL 147 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~ 147 (164)
..|++++|+.+|++++..+|++..+|+.+|.++..+|++++|+..+++++.++|.+......+..++
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999844333333333
No 10
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=2e-22 Score=135.64 Aligned_cols=128 Identities=12% Similarity=0.046 Sum_probs=123.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNP-LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..++++++.+|. ...++..+|.++.
T Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~ 87 (228)
T 4i17_A 14 GNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hHHHHHHHHHHHH
Confidence 6788999999999999999999999 99999999999999999999999999999999998 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCc-------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 81 LQKNVDEALKSYQELEIEDPNDF-------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.+|++++|+.++++++..+|++. .+++.+|.++...|++++|+..|++++...|.
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998 66999999999999999999999999999999
No 11
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.90 E-value=9.7e-23 Score=135.94 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=119.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFE----------------NALLMDRCGEGEAVIKRLEEALEIAEDGNKL 65 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 65 (164)
|..++..|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---- 86 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN---- 86 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----
Confidence 567889999999999999999999999999999 999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh------------------------------
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL------------------------------ 115 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~------------------------------ 115 (164)
+..++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++..
T Consensus 87 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g 164 (208)
T 3urz_A 87 --NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164 (208)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 789999999999999999999999999999999999998888877643
Q ss_pred -----cCCHHHHHHHHHHHHhhCCCc
Q 031170 116 -----LDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 116 -----~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+..|++++.+.|+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 346788999999999999975
No 12
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=1.3e-22 Score=136.59 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=127.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh-hhhhHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-EARDVRFIMAQIK 79 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~ 79 (164)
+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++.+|++.... ....++..+|.++
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence 367899999999999999999999999999999999999999999999999999999999832110 0126688999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCC--CchhhhhHHHHHHhcCCH---------------------------HHHHHHHHHHH
Q 031170 80 FLQKNVDEALKSYQELEIEDPN--DFRPYFCKGMIYSLLDRN---------------------------AEAKEEFAKYR 130 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~---------------------------~~A~~~l~~~~ 130 (164)
...|++++|+.+|++++..+|+ +..+++.+|.++...|+. ++|+.++++++
T Consensus 128 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 899999999999998888 99999999999
Q ss_pred hhCCCcchhhhHh
Q 031170 131 QLSPKKFEVEGYL 143 (164)
Q Consensus 131 ~~~p~~~~~~~~~ 143 (164)
++.|++......+
T Consensus 208 ~l~p~~~~~~~~l 220 (228)
T 4i17_A 208 TLSPNRTEIKQMQ 220 (228)
T ss_dssp HHCTTCHHHHHHH
T ss_pred hcCCCCHHHHHHH
Confidence 9999994443333
No 13
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.89 E-value=2e-22 Score=124.45 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=102.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|..++..|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+ ...++..+|.++.
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~ 92 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 113 (164)
.+|++++|+.+|+++++.+|++..++..++.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999988887753
No 14
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.89 E-value=2.3e-22 Score=127.47 Aligned_cols=119 Identities=14% Similarity=0.039 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170 14 ARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQ 93 (164)
Q Consensus 14 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 93 (164)
+...|++++..+|+++.+++.+|.++...|++++|+..|++++..+|. +..++..+|.++...|++++|+.+|+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred HHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 94 ELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 94 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
+++..+|+++.+++.+|.++...|++++|+..|++++...|.+..
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999999999999999999999998743
No 15
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=5.5e-21 Score=131.17 Aligned_cols=132 Identities=15% Similarity=0.108 Sum_probs=122.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..++..|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++..|+... ...+++.+|.+
T Consensus 22 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~a~~~lg~~ 98 (261)
T 3qky_A 22 AMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---VPQAEYERAMC 98 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---hHHHHHHHHHH
Confidence 677899999999999999999999999 899999999999999999999999999999886322 36788899999
Q ss_pred HHH--------ccCHHHHHHHHHHHHHhCCCCchhh-----------------hhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 79 KFL--------QKNVDEALKSYQELEIEDPNDFRPY-----------------FCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 79 ~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
++. .|++++|+..|++++..+|++..+. +.+|.++...|++++|+..|++++...
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999 9999999999999999999988776 888999999999999999999999999
Q ss_pred CCc
Q 031170 134 PKK 136 (164)
Q Consensus 134 p~~ 136 (164)
|++
T Consensus 179 p~~ 181 (261)
T 3qky_A 179 PDT 181 (261)
T ss_dssp TTS
T ss_pred CCC
Confidence 986
No 16
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.87 E-value=9.7e-22 Score=142.10 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=125.8
Q ss_pred CchhhhhcCC-chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 1 MARLLSEMGK-TQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 1 la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
+|.++...|+ +++|+..|++++..+|++..+|..+|.++..+|++++|+..|+++++++|+ +..+|..+|.++
T Consensus 137 ~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~------~~~a~~~lg~~~ 210 (382)
T 2h6f_A 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------CHHHHHHHHHHH
Confidence 3677889996 999999999999999999999999999999999999999999999999999 789999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh-cCCHHHH-----HHHHHHHHhhCCCcchhhhH
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL-LDRNAEA-----KEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~A-----~~~l~~~~~~~p~~~~~~~~ 142 (164)
...|++++|+.+|++++..+|++..+|+.+|.++.. .|..++| +..+.+++.++|++.....+
T Consensus 211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~ 279 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 279 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999999999999999 5665788 59999999999999443333
No 17
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.87 E-value=8.7e-21 Score=116.66 Aligned_cols=130 Identities=22% Similarity=0.317 Sum_probs=123.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|. ...++..+|.++.
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999999999999999987 6778889999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|+.++++++...|.+...++.+|.++...|++++|+..+.+++...|.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999998863
No 18
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=9.9e-22 Score=124.78 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=105.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.+|...|+|++|++.|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ ...++..+|.++.
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~ 110 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT------QKDLVLKIAELLC 110 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HccCHHHHHHH-HHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 81 LQKNVDEALKS-YQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 81 ~~~~~~~A~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
..|++++|+.. ++++++.+|+++.++..++.++...|+
T Consensus 111 ~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 111 KNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999887766 599999999999999999999888775
No 19
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.87 E-value=2.8e-21 Score=125.36 Aligned_cols=128 Identities=10% Similarity=0.080 Sum_probs=118.0
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH-HHHc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI-KFLQ 82 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~ 82 (164)
.+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|. +..++..+|.+ +...
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQA 92 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHT
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999999999999999999998 68889999999 8899
Q ss_pred cCH--HHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 83 KNV--DEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 83 ~~~--~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
|++ ++|+.++++++..+|++..+++.+|.++...|++++|+..+.+++...|.+.
T Consensus 93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999 9999999999999999999999999999999999999999999999999983
No 20
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=1.1e-21 Score=151.63 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=125.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+ ...++..+|.++.
T Consensus 49 Lg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|++++|+.+|+++++.+|++..++..+|.++...|++++|++.+++++.+.|+.
T Consensus 123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 99999999999999999999999999999999999999999999999999887654
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=1.5e-20 Score=126.81 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=91.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++..
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------NGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------SHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 455666777777777777777777777777777777777777777777777777777665 45666667777777
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.++++++...|.+...+..+|.++...|++++|+..+++++...|.+
T Consensus 138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 7777777777777777777777777777777777777777777777777777665
No 22
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.87 E-value=7.4e-21 Score=123.10 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=111.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|. ...++..+|.++..
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHH
Confidence 566778888888888888888888888888888888888888888888888888888887 57778888888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.++++++...|.+...++.+|.++...|++++|+..+.+++...|.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 8888888888888888888888888888888888888888888888888888877
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.87 E-value=1.6e-21 Score=122.55 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=109.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170 15 RNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQE 94 (164)
Q Consensus 15 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 94 (164)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|. +..++..+|.++...|++++|+.+|++
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred HHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 95 LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 95 ~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
++..+|+++.+++.+|.++...|++++|+..|++++.+.|.+..
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999998743
No 24
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=1.8e-20 Score=121.32 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=124.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~ 121 (186)
T 3as5_A 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999999999999999998 6788999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|++
T Consensus 122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999887
No 25
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.86 E-value=1.5e-20 Score=135.35 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=97.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+ ...++..+|.++..
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD------LYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT------CTHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777777777777777777777777776 56666777777777
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.+|++++..+|++..++..+|.++...|++++|+..|++++...|.+
T Consensus 148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 202 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 7777777777777777777777777777777777777777777777777777776
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=1.2e-20 Score=127.32 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=115.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++.
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~ 102 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYV 102 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999998 6888999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
..|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|.+..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence 9999999999999999999999999999999999999999999999999999998843
No 27
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=2.6e-20 Score=124.14 Aligned_cols=129 Identities=13% Similarity=0.108 Sum_probs=82.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++..
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------SAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666665 45555666666666
Q ss_pred c-cCHHHHHHHHHHHHH--hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 Q-KNVDEALKSYQELEI--EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~-~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
. |++++|+.++++++. ..|.+..+++.+|.++...|++++|+..+.+++...|.+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6 666666666666666 344445556666666666666666666666666666655
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.8e-20 Score=130.51 Aligned_cols=136 Identities=18% Similarity=0.100 Sum_probs=117.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh---hhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL---KEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~ 78 (164)
|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..+..... .....++..+|.+
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 5678888999999999999999999999999999999999999999999999999886432211 1135788899999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
+...|++++|+.++++++..+|++..++..+|.++...|++++|+.++++++...|++.
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 99999999999999999999999999999999999999999999999999999999883
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-20 Score=127.86 Aligned_cols=137 Identities=16% Similarity=0.147 Sum_probs=115.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS-------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN---------- 63 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 63 (164)
+|.++...|++++|+..+++++...|++ +.++..+|.++...|++++|+..++++++..|...
T Consensus 44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (258)
T 3uq3_A 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence 3677888899999999999999988876 78889999999999999999999999998544311
Q ss_pred ----------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 64 ----------KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 64 ----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.......++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 0011567788889999999999999999999999999998899999999999999999999999999999
Q ss_pred CCcc
Q 031170 134 PKKF 137 (164)
Q Consensus 134 p~~~ 137 (164)
|.+.
T Consensus 204 ~~~~ 207 (258)
T 3uq3_A 204 PNFV 207 (258)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 8873
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.5e-20 Score=127.67 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=121.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILA--------------------------GNPLSFEALFENALLMDRCGEGEAVIKRLEE 54 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 54 (164)
+|.++...|++++|+.+|++++. .+|.++.++..+|.++...|++++|+..+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 35677888888888888888888 7788889999999999999999999999999
Q ss_pred HHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC-
Q 031170 55 ALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS- 133 (164)
Q Consensus 55 a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~- 133 (164)
+++..|. ...++..+|.++...|++++|+.++++++..+|++..+++.+|.++...|++++|+..+++++...
T Consensus 165 a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 165 MIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238 (258)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence 9999998 688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----CCc
Q 031170 134 -----PKK 136 (164)
Q Consensus 134 -----p~~ 136 (164)
|.+
T Consensus 239 ~~~~~p~~ 246 (258)
T 3uq3_A 239 EVNNGSSA 246 (258)
T ss_dssp HHHTTTTH
T ss_pred hhcCCCch
Confidence 776
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.7e-20 Score=132.98 Aligned_cols=136 Identities=16% Similarity=0.189 Sum_probs=108.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-------------- 67 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------------- 67 (164)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|.......
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 567778888888888888888888888888888888888888888888888888887765321110
Q ss_pred --------------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH
Q 031170 68 --------------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE 121 (164)
Q Consensus 68 --------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 121 (164)
...++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 245667788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCCCcc
Q 031170 122 AKEEFAKYRQLSPKKF 137 (164)
Q Consensus 122 A~~~l~~~~~~~p~~~ 137 (164)
|+..+++++...|.+.
T Consensus 266 A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCch
Confidence 8888888888888873
No 32
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=5.7e-21 Score=141.64 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=80.7
Q ss_pred chhhhhcCCc-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKT-QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++.
T Consensus 109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~lg~~~~ 181 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KVSLQNLSMVLR 181 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHT
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------HHHHHHHHHHHH
Confidence 4566667777 77777777777777777777777777777777777777777777777665 245555555555
Q ss_pred Hc---------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc--------CCHHHHHHHHHHHHhhCC
Q 031170 81 LQ---------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL--------DRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 81 ~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------~~~~~A~~~l~~~~~~~p 134 (164)
.. |++++|+.+|++++..+|++..+++.+|.++... |++++|+..|++++.+.|
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 55 5555555555555555555555555555555555 555555555555555555
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=2.8e-20 Score=126.44 Aligned_cols=129 Identities=21% Similarity=0.173 Sum_probs=70.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++..
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555554 34444555555555
Q ss_pred ccCHHHHHHHHHHHHH--hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEI--EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+.+++...|.+
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 5555555555555555 444444455555555555555555555555555555544
No 34
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=3.7e-20 Score=133.31 Aligned_cols=127 Identities=17% Similarity=0.042 Sum_probs=58.9
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|. .+.++..+|.++...|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcC
Confidence 3334444444444444444444444444444444444444444444444444444443 3344444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|++
T Consensus 286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 44444444444444444444444444444444444444444444444444444
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=6.9e-20 Score=124.52 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=121.7
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hccccchhhhhhhHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE--IAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~ 78 (164)
+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.+++++++ ..|. ...++..+|.+
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~la~~ 150 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE------RSRVFENLGLV 150 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT------HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc------cHHHHHHHHHH
Confidence 367788999999999999999999999999999999999999999999999999999 6665 67888899999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
+...|++++|+.++++++...|.+..+++.+|.++...|++++|+..+++++...|.+.
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 99999999999999999999999999999999999999999999999999999999873
No 36
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.85 E-value=6.9e-20 Score=121.79 Aligned_cols=126 Identities=13% Similarity=0.158 Sum_probs=118.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++ .| ++.+++.+|.++...|++++|+..++++++.+|. ...++..+|.++..
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHH
Confidence 677889999999999999996 33 7889999999999999999999999999999998 78899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCc----------------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDF----------------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.+|++++...|.+. .+++.+|.++...|++++|+..+++++...|.+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999988877 889999999999999999999999999999987
No 37
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=140.23 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=127.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHhhccccchhhhhhhH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRC---------GEGEAVIKRLEEALEIAEDGNKLKEARDV 71 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 71 (164)
+|.++...|++++|+..|++++..+|+ ..++..+|.++... |++++|+..|+++++.+|+ ...+
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~ 215 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DGRS 215 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CHHH
Confidence 477899999999999999999999999 79999999999999 9999999999999999998 7889
Q ss_pred HHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC---CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhh
Q 031170 72 RFIMAQIKFLQ--------KNVDEALKSYQELEIEDP---NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVE 140 (164)
Q Consensus 72 ~~~la~~~~~~--------~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~ 140 (164)
+..+|.++... |++++|+.+|++++..+| .++.+++.+|.++...|++++|+..|++++.+.|++....
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999 999999999999999999 9999999999999999999999999999999999984433
Q ss_pred hHh
Q 031170 141 GYL 143 (164)
Q Consensus 141 ~~~ 143 (164)
..+
T Consensus 296 ~~l 298 (474)
T 4abn_A 296 QRE 298 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 38
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=1.3e-20 Score=129.28 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=118.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH--------cCCcHHHHHHHHHHHhhccccchhhhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDR--------CGEGEAVIKRLEEALEIAEDGNKLKEAR 69 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 69 (164)
+|.++...|++++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+..|+++++.+|+.... .
T Consensus 58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~ 134 (261)
T 3qky_A 58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV---D 134 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH---H
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH---H
Confidence 4778999999999999999999998854 6789999999999 999999999999999999984321 1
Q ss_pred hHH--------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhhhHHHHHHhc----------CCHHHH
Q 031170 70 DVR--------------FIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYFCKGMIYSLL----------DRNAEA 122 (164)
Q Consensus 70 ~~~--------------~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~----------~~~~~A 122 (164)
.+. +.+|.+|...|++++|+..|++++..+|++ ..+++.+|.++... |++++|
T Consensus 135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 222 788999999999999999999999999984 46899999999977 899999
Q ss_pred HHHHHHHHhhCCCcc
Q 031170 123 KEEFAKYRQLSPKKF 137 (164)
Q Consensus 123 ~~~l~~~~~~~p~~~ 137 (164)
+..+++++...|++.
T Consensus 215 ~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 215 VELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHCCCCh
Confidence 999999999999983
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=3.4e-20 Score=127.29 Aligned_cols=133 Identities=15% Similarity=0.028 Sum_probs=118.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++. |..... ...++..+|.++..
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~--~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKA--KSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTC--CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhH--HHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999994 431111 24457899999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 142 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence 99999999999999999999999999999999999999999999999999999883
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=8.3e-20 Score=121.66 Aligned_cols=130 Identities=13% Similarity=0.029 Sum_probs=122.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHh--hccccchhhhhhhHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRC-GEGEAVIKRLEEALE--IAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~ 77 (164)
+|.++...|++++|+.+|++++...|+++.++..+|.++... |++++|+..++++++ ..|. ...++..+|.
T Consensus 48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~ 121 (225)
T 2vq2_A 48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT------PYIANLNKGI 121 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSC------HHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcc------hHHHHHHHHH
Confidence 367889999999999999999999999999999999999999 999999999999999 4444 5778889999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC-Cc
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP-KK 136 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p-~~ 136 (164)
++...|++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...| .+
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 181 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999 66
No 41
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=4.2e-21 Score=147.91 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=125.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+ ...++..+|.++..
T Consensus 440 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 440 VRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG------ELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999998 78999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++ +.+|+++++.+|++..+++.+|.++...|++++|+..|++++.++|.+
T Consensus 514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 999999 999999999999999999999999999999999999999999999998
No 42
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.7e-20 Score=128.00 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=99.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+.++...|++++|+..+++++..+|+++.++..+|.++...| ++++|+..++++++.+|. ...++..+|.++.
T Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~ 136 (330)
T 3hym_B 63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT------YGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT------CTHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHH
Confidence 345667777777777777777777777777777777777777 777777777777777776 5667777777788
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|+.++++++...|.+..+++.+|.++...|++++|+..+++++...|.+
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 192 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 88888888888888777777777777777777777888888888888887777777
No 43
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.4e-20 Score=133.22 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=120.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL--SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
|.++...|++++|+..|++++...|+ ++.++..+|.++...|++++|+..++++++..|. ...++..+|.++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~ 257 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATL 257 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 67888999999999999999999999 8999999999999999999999999999999998 788999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
...|++++|+.+|++++..+|++..+++.+|.++...|++++|+..|++++.+.|..
T Consensus 258 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999875
No 44
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.84 E-value=7.5e-20 Score=123.20 Aligned_cols=133 Identities=9% Similarity=0.070 Sum_probs=117.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..++..|+|++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++.+|+... ...+++.+|.+
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~---~~~a~~~~g~~ 87 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---HHHHHHHHHHH
Confidence 6778999999999999999999999874 78999999999999999999999999999998321 13477888888
Q ss_pred HHH------------------ccCHHHHHHHHHHHHHhCCCCchhh-----------------hhHHHHHHhcCCHHHHH
Q 031170 79 KFL------------------QKNVDEALKSYQELEIEDPNDFRPY-----------------FCKGMIYSLLDRNAEAK 123 (164)
Q Consensus 79 ~~~------------------~~~~~~A~~~~~~~~~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~ 123 (164)
+.. .|++++|+..|++++..+|++..++ +.+|.++...|++++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 876 6799999999999999999988665 56788999999999999
Q ss_pred HHHHHHHhhCCCcc
Q 031170 124 EEFAKYRQLSPKKF 137 (164)
Q Consensus 124 ~~l~~~~~~~p~~~ 137 (164)
..|++++...|++.
T Consensus 168 ~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQ 181 (225)
T ss_dssp HHHHHHHHHSTTSH
T ss_pred HHHHHHHHHCcCCC
Confidence 99999999999973
No 45
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.4e-19 Score=129.08 Aligned_cols=136 Identities=17% Similarity=0.131 Sum_probs=101.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh--------------
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-------------- 67 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------------- 67 (164)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|.......
T Consensus 105 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 556667777777777777777777777777777777777777777777777777776665332210
Q ss_pred -------------------------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc
Q 031170 68 -------------------------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL 116 (164)
Q Consensus 68 -------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 116 (164)
...++..+|.++...|++++|+.+|++++..+|.+..++..+|.++...
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence 2355667788888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcc
Q 031170 117 DRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 117 ~~~~~A~~~l~~~~~~~p~~~ 137 (164)
|++++|+..+++++...|.+.
T Consensus 265 g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCcH
Confidence 888888888888888888773
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=2.3e-19 Score=123.07 Aligned_cols=130 Identities=20% Similarity=0.184 Sum_probs=104.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|. ...++..+|.++..
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHH
Confidence 567778888888888888888888888888888888888888888888888888888887 57778888888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCc----------------------------------------------------------
Q 031170 82 QKNVDEALKSYQELEIEDPNDF---------------------------------------------------------- 103 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~---------------------------------------------------------- 103 (164)
.|++++|+.+|++++..+|++.
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888888888888777653
Q ss_pred ------------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 104 ------------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 104 ------------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
..++.+|.++...|++++|+..+++++...|.++
T Consensus 204 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 3445667777777888888888888887777663
No 47
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=8.9e-20 Score=130.04 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=120.2
Q ss_pred hcCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 7 EMGKTQDARNVFEEILAGNPL--SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
..|++++|+..|++++...|+ ++.++..+|.++...|++++|+..++++++..|. ...++..+|.++...|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTC
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCC
Confidence 789999999999999999999 8999999999999999999999999999999998 68899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999998877
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.1e-19 Score=128.68 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=72.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|. ...++..+|.++..
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD------FTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cchHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666666666666666666655 34455555555555
Q ss_pred ccCHHHHHHHHHHHHHhCC---CCchhhhhH------------HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDP---NDFRPYFCK------------GMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p---~~~~~~~~~------------~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.+|++++..+| ++..++..+ |.++...|++++|+..+.+++...|.+
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 5555555555555555555 444444333 344444555555555555555555444
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=4.7e-20 Score=126.55 Aligned_cols=130 Identities=20% Similarity=0.200 Sum_probs=121.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGN----PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
+..+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|. ...++..+|.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~ 85 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGI 85 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHH
Confidence 445567789999999999999984 556788999999999999999999999999999998 7889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..+++++...|.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999999999999999999999999999983
No 50
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.83 E-value=1.5e-19 Score=115.37 Aligned_cols=127 Identities=13% Similarity=0.014 Sum_probs=116.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++.+|. ...++..+|.++.
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~ 92 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999999999999999998 6889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhH--HHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCK--GMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
..|++++|+.+|++++..+|.+..++..+ +..+...|++++|+..+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 99999999999999999999998888544 444778899999999999886654
No 51
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=2.1e-19 Score=127.16 Aligned_cols=132 Identities=13% Similarity=0.075 Sum_probs=116.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcc---ccchhhhhhhHHHHH--
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAE---DGNKLKEARDVRFIM-- 75 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~l-- 75 (164)
+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..| . ...++..+
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~ 116 (359)
T 3ieg_A 43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE------EKEAESQLVK 116 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH------HHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC------hHHHHHHHHH
Confidence 367888999999999999999999999999999999999999999999999999999998 5 44455444
Q ss_pred ----------HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 76 ----------AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 76 ----------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
|.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..+.+++...|.+..
T Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 189 (359)
T 3ieg_A 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 788889999999999999999999998888999999999999999999999999998888843
No 52
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.83 E-value=1e-19 Score=126.88 Aligned_cols=129 Identities=16% Similarity=0.020 Sum_probs=121.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+ ........+..+..
T Consensus 124 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD------TRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS------HHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc------hHHHHHHHHHHHHh
Confidence 567889999999999999999999999999999999999999999999999999999997 55666677777889
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.++.++|+..+++++..+|++..+++.+|.++...|++++|+..|.++++.+|.+
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999987
No 53
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.83 E-value=7.7e-20 Score=116.14 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=93.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+ ++.+++.+|.++.
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~------~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS------CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
..|++++|+.+|++++...|+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999988764
No 54
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.83 E-value=2.8e-19 Score=134.98 Aligned_cols=130 Identities=12% Similarity=-0.050 Sum_probs=115.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|++.|+++++.+|+++.++..+|.++..+|++++|+..++++++.+|+ ...++..+|.++.
T Consensus 29 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~ 102 (568)
T 2vsy_A 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALE 102 (568)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH
Confidence 3667888899999999999999999999999999999999999999999999999998887 6788888999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc---CCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL---DRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|+.+|+++++.+|++..++..++.++... |++++|+..+++++...|.+
T Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999898888888999998888 89999999999999888886
No 55
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2e-19 Score=110.46 Aligned_cols=102 Identities=17% Similarity=0.047 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
|..+..+..+|..++..|++++|+..|+++++.+|. +..++..+|.++...|++++|+.++++++..+|++..+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 345677888888889999999999999999998888 67888888999999999999999999999988988888
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
++.+|.++...|++++|+..+++++.+.
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999998888
No 56
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.82 E-value=2.3e-19 Score=120.86 Aligned_cols=136 Identities=9% Similarity=0.036 Sum_probs=118.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH------------------cCCcHHHHHHHHHHHhhc
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFE---ALFENALLMDR------------------CGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~~~~~a~~~~ 59 (164)
+|.++...|++++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|+++++.+
T Consensus 47 lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 47 LIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 367899999999999999999999999865 78999998876 578999999999999999
Q ss_pred cccchhhh-----------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc---hhhhhHHHHHHhcCCHHHHHHH
Q 031170 60 EDGNKLKE-----------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF---RPYFCKGMIYSLLDRNAEAKEE 125 (164)
Q Consensus 60 ~~~~~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~ 125 (164)
|+...... .......+|.+++..|++++|+..|+++++.+|+++ .+++.+|.++..+|++++|+..
T Consensus 127 P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 127 PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 98542210 012225789999999999999999999999999986 6799999999999999999999
Q ss_pred HHHHHhhCCCc
Q 031170 126 FAKYRQLSPKK 136 (164)
Q Consensus 126 l~~~~~~~p~~ 136 (164)
++.+....|++
T Consensus 207 ~~~l~~~~~~~ 217 (225)
T 2yhc_A 207 AKIIAANSSNT 217 (225)
T ss_dssp HHHHHHCCSCC
T ss_pred HHHHHhhCCCc
Confidence 99999999887
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=2.6e-19 Score=122.85 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=118.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
+|.++...|++++|+..+++++. .|.+ ..++..+|.++...|++++|+..++++++.+|. ...++..+|
T Consensus 43 l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~ 115 (272)
T 3u4t_A 43 RAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIG 115 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------cHHHHHHHH
Confidence 36788999999999999999999 4444 445899999999999999999999999999998 688999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.++...|++++|+.+|++++..+|.+..+++.+|......+++++|+..+++++...|.+.
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 176 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch
Confidence 9999999999999999999999999999999999445556699999999999999999983
No 58
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.6e-19 Score=109.97 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=100.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+ ...++..+|.++..
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred ccCHHHHHHHHHHHHHhC------CCCchhhhhHHHHHH
Q 031170 82 QKNVDEALKSYQELEIED------PNDFRPYFCKGMIYS 114 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~------p~~~~~~~~~~~~~~ 114 (164)
.|++++|+.+|++++..+ |.+..++..++.+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999 888877777766654
No 59
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=9.1e-19 Score=127.94 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=102.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|. ...++..+|.++..
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD------FTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH
Confidence 566778888888888888888888888888888888888888888888888888888887 56777788888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCc---hhhhhH------------HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDF---RPYFCK------------GMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~---~~~~~~------------~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.+|++++..+|.+. .++..+ |.++...|++++|+..+++++...|.+
T Consensus 107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 176 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176 (450)
T ss_dssp TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888777766 554443 555777788888888888888777776
No 60
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=6.1e-19 Score=123.23 Aligned_cols=129 Identities=11% Similarity=0.033 Sum_probs=73.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENA--LLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
|.++...|++++|+..|++++..+|++.......+ .++...|++++|+..|+++++.+|+ ...++..+|.++
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------~~~~~~~la~~~ 210 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TLLLLNGQAACH 210 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHH
Confidence 34555555555555555555555555543333222 2222335555555555555555555 455555666666
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH-HHHHHHHHHhhCCCc
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE-AKEEFAKYRQLSPKK 136 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-A~~~l~~~~~~~p~~ 136 (164)
...|++++|+..|++++..+|+++.++..+|.++...|+..+ +.+++++++..+|++
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 666666666666666666666666666666666666666654 345556666666665
No 61
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=3.4e-19 Score=124.80 Aligned_cols=126 Identities=14% Similarity=0.172 Sum_probs=122.0
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|. ...++..+|.++...|
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGN 220 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcC
Confidence 4778899999999999999999999999999999999999999999999999999998 6888999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
++++|+.++++++...|.+..++..+|.++...|++++|+..+++++...|.
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999998
No 62
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.82 E-value=1e-19 Score=118.18 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=112.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH-
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF- 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~- 80 (164)
|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...|+ +.....++.+..
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-------~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQD-------NSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-------HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC-------hHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999882 233333443422
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..++..+|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 33445568999999999999999999999999999999999999999999999975
No 63
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.82 E-value=3.6e-19 Score=114.18 Aligned_cols=105 Identities=15% Similarity=0.007 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
+.++..++.+|.++...|++++|+..|+++++.+|. ...++..+|.++...|++++|+.+|++++..+|++..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 81 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 334555666666666666666666666666666665 45556666666666666666666666666666666666
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++.+|.++...|++++|+..|++++.+.|++
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 6666666666666666666666666666665
No 64
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.82 E-value=4.3e-19 Score=133.99 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=102.9
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 87 (164)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+ ...++..+|.++..+|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHH
Confidence 578999999999999999999999999999999999999999999999999998 78899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 88 ALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
|+.+|++++..+|++..+++.+|.++...|++++|+..+++++...|.+..
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 126 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999999999999999843
No 65
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.81 E-value=2.6e-19 Score=112.38 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=97.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+ ++.+++.+|.++..
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 113 (164)
.|++++|+.+|++++..+|.++........+.
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 99999999999999999998877655444443
No 66
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=4.9e-19 Score=108.93 Aligned_cols=106 Identities=16% Similarity=0.063 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.|.++.+++.+|.++...|++++|+..++++++.+|. ...++..+|.++...|++++|+.++++++..+|.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 4566777777777777888888888888888777776 5667777777777778888888888887777777777
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 105 PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++.+|.++...|++++|+..+.+++...|.+
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 77777877777888888888888887777776
No 67
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.81 E-value=4.7e-19 Score=126.14 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=117.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL 65 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 65 (164)
+|.+++..|++++|+..|++++...|++ ..++..+|.++..+|++++|+..++++++++|.
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---- 228 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN---- 228 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 3678899999999999999999999999 689999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHH-HHHHHHHHhh
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEA-KEEFAKYRQL 132 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A-~~~l~~~~~~ 132 (164)
+..+++.+|.++...|++++|+.+|++++..+|++..++..++.++...|++++| ...+.+++..
T Consensus 229 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 --NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999998 5566776654
No 68
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.81 E-value=3.4e-19 Score=112.81 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=94.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+ ++.+++.+|.++..
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX------EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999998 78999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhh
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPY 106 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~ 106 (164)
.|++++|+.+|++++...|+++...
T Consensus 102 ~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred cCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999877653
No 69
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.81 E-value=8e-19 Score=112.57 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=102.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|. ...++..+|.++.
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------YSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
..|++++|+.+|++++..+|++..+++..+.....
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999988777765443
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=4.2e-19 Score=123.96 Aligned_cols=136 Identities=15% Similarity=0.080 Sum_probs=107.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRC-GEGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
+|.+|...|++++|+.+|++++...|.. ..++..+|.++... |++++|+.+|++++++.|..+.......++.
T Consensus 83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 162 (292)
T 1qqe_A 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3567888889999999999998887643 45788889999886 9999999999999998876433222245677
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCch-------hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPNDFR-------PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|.++..+|++++|+.+|++++...|.+.. .++.+|.++..+|++++|+..+++++.+.|..
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 8899999999999999999999998887654 45778888999999999999999999988876
No 71
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.81 E-value=3.1e-20 Score=132.21 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=122.3
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---------hhhhhhHHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---------LKEARDVRFIMAQ 77 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~la~ 77 (164)
..+++++|+..|++++...|.++.++..+|.+++..|++++|+..|+++++..|.... ......++..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999998310 0001478889999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~ 144 (164)
++..+|++++|+.+|++++..+|++..+++.+|.++..+|++++|+..|++++.+.|.+......+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999844333333
No 72
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.81 E-value=9e-19 Score=107.19 Aligned_cols=106 Identities=19% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.|.++.++..+|.++...|++++|+..+++++...|. ...++..+|.++...|++++|+.++++++..+|.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 81 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH
Confidence 3445566666666666777777777777777666665 4556666667777777777777777777666666666
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 105 PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+++.+|.++...|++++|+..+.+++...|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 66666776666777777777777776666665
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=3.8e-19 Score=137.06 Aligned_cols=126 Identities=12% Similarity=0.112 Sum_probs=120.7
Q ss_pred hhcCCchHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 6 SEMGKTQDARNVFEEIL--------AGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
...|++++|++.|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|+ +..++..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHH
Confidence 46799999999999999 899999999999999999999999999999999999998 7899999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
++...|++++|+..|++++..+|++..+++.+|.++...|++++ +..|+++++.+|.+..
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~ 535 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS 535 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence 99999999999999999999999999999999999999999999 9999999999999933
No 74
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=1.4e-18 Score=129.45 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=91.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++..+|+ +.++..+|.++...|++++|+..++++++.+|. ...++..+|.++..
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE------YPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------CHHHHHHHHHHHHh
Confidence 34566667777777777777777776 667777777777777777777777777777766 56666677777777
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+.
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 378 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP 378 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 77777777777777777777777777777777777777777777777777777663
No 75
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.80 E-value=2.7e-18 Score=129.57 Aligned_cols=135 Identities=13% Similarity=0.048 Sum_probs=109.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh-hhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA-RDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~~~ 80 (164)
|.++...|++++|+++|++++...|+++.++..+|.++...|++++|+..|+++++..|..+..... ..++..+|.++.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 5567778888888888888888888888888888888888888888888888888875421110002 567778888888
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|+..|++++..+|++..++..++.++...|++++|+..+++++.+.|++
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 88999999999988888888888888888888888899999999999998888888
No 76
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.80 E-value=5.8e-19 Score=108.95 Aligned_cols=100 Identities=11% Similarity=-0.023 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc------
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF------ 103 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------ 103 (164)
.++..+|.+++.+|+|++|+..|+++++++|+ ...++..+|.+|..+|++++|+.++++++..+|++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 34445555555555555555555555555555 455555555555555555555555555555544432
Q ss_pred -hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 104 -RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.++..+|.++..+|++++|+..|++++...|+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 23445555555555555555555555555544
No 77
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=2.2e-18 Score=120.38 Aligned_cols=126 Identities=13% Similarity=0.039 Sum_probs=106.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH--HHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA--QIK 79 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la--~~~ 79 (164)
|.++...|++++|++.+++ |+++.++..+|.++..+|++++|+..++++++.+|+ .....+..+ .++
T Consensus 108 a~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~------~~~~~l~~a~~~l~ 176 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED------ATLTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHH
Confidence 5677888888888888877 788888888999999999999999999999998876 332333222 334
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
...|++++|+.+|++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 45589999999999999999999999999999999999999999999999999999933
No 78
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.80 E-value=2.2e-18 Score=125.86 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=65.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh---------------
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE--------------- 67 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------------- 67 (164)
.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+......
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555554444211000
Q ss_pred -------------------------h----hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 68 -------------------------A----RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 68 -------------------------~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
. ...+..+|.++...|++++|+.++++++..+|++..+++.+|.++...|+
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 1 12333445555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 031170 119 NAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 119 ~~~A~~~l~~~~~~~p~~ 136 (164)
+++|+..+++++.+.|++
T Consensus 345 ~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHhCcch
Confidence 555555555555555554
No 79
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.80 E-value=1.9e-19 Score=133.57 Aligned_cols=130 Identities=12% Similarity=0.006 Sum_probs=117.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|++.|+++++.+|+++.++..+|.++..+|++++|+..++++++++|. ...++..+|.++.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~ 85 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNM 85 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999999999999999999998 7889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMI--YSLLDRNAEAKEEFA-----------KYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~A~~~l~-----------~~~~~~p~~ 136 (164)
.+|++++|+.+|+++++.+|++..++..++.+ +...|++++|++.+. +++...|..
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999988 888899999999999 777777765
No 80
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.80 E-value=5.3e-19 Score=108.25 Aligned_cols=100 Identities=10% Similarity=0.045 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHH
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKG 110 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 110 (164)
.++.+|.++...|++++|+..|+++++.+|+ +..+++.+|.++...|++++|+.+|++++..+|++..+++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4778889999999999999999999999998 7888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 111 MIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 111 ~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.++...|++++|+..+++++..+|.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999998876
No 81
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=1.7e-18 Score=128.93 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=124.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++.
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~ 355 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLY 355 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 3677889999999999999999999999999999999999999999999999999999998 6788999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++|+.++++++..+|++..++..+|.++...|++++|+..+++++...|.+
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999998776
No 82
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.79 E-value=8.9e-19 Score=108.10 Aligned_cols=104 Identities=9% Similarity=0.003 Sum_probs=91.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh-hhhHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE-ARDVRFIMAQIK 79 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~la~~~ 79 (164)
+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|....... ...++..+|.++
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999987443211 245778899999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
..+|++++|+.+|++++...|+ ++.
T Consensus 94 ~~~~~~~~A~~~~~kal~~~~~-~~~ 118 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLSEFRD-PEL 118 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcC-HHH
Confidence 9999999999999999998763 543
No 83
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=1.3e-18 Score=121.83 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=78.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|. ...++..+|.++..
T Consensus 28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------CHHHHHHHHHHHHH
Confidence 566778888899999999888888888888888888888888888999989888888887 56777788888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCch
Q 031170 82 QKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.|++++|+.++++++...|.+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~ 124 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQ 124 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTT
T ss_pred cCCHHHHHHHHHHHHHhCCccHH
Confidence 88877777777776666555433
No 84
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.78 E-value=2.4e-18 Score=105.34 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=87.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+ ...++..+|.++..
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCch
Q 031170 82 QKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.|++++|+.++++++..+|.+..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998653
No 85
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=8.3e-18 Score=126.87 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=84.0
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++..|. ...++..+|.++...|
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC
Confidence 4445555555555555555555666666666666666677777777777766666665 4556666677777777
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++++|+.+|++++...|.+...+..++.++...|++++|+..|++++...|.+
T Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77777777777666666666666667777766777777777777776666665
No 86
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.78 E-value=6.9e-18 Score=104.65 Aligned_cols=107 Identities=12% Similarity=-0.030 Sum_probs=100.4
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 23 AGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 23 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
...|.++..++.+|.++...|++++|+..|++++..+|. ...++..+|.++...|++++|+.++++++..+|.+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 356788999999999999999999999999999999998 78899999999999999999999999999999999
Q ss_pred chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..+++.+|.++...|++++|+..+.+++...|.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999999887
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=2.3e-18 Score=120.19 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=117.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
|.++...|++++|+..|.+++...+. ...++..+|.++..+|++++|+.++++++++.+..+.......++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999999997532 256899999999999999999999999999998755443345678899
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 76 AQIKFLQ-KNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 76 a~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|.+|... |++++|+.+|++++...|.. ..++..+|.++..+|++++|+.+|++++...|.+
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 9999996 99999999999999988754 3467889999999999999999999999999887
No 88
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.78 E-value=1.9e-18 Score=114.02 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=106.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF----------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL 65 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 65 (164)
|..++..|+|++|+..|++++...|.++ .++..+|.++...|++++|+..++++++.+|.
T Consensus 45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---- 120 (198)
T 2fbn_A 45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---- 120 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----
Confidence 6778899999999999999999999887 89999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHH
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~ 123 (164)
...+++.+|.++...|++++|+.+|++++..+|.+..++..++.++...++..++.
T Consensus 121 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 121 --NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred --cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999998888777766
No 89
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.78 E-value=8.1e-18 Score=107.62 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------------------ccccchhhhhhhHHHHHHHHHHHccCHHHHH
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEI------------------AEDGNKLKEARDVRFIMAQIKFLQKNVDEAL 89 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 89 (164)
....+...|..++..|+|++|+..|.+++.. .|. ...++..+|.++...|++++|+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK------NIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH------HHHHHHHHHHHHHhcCcHHHHH
Confidence 3567889999999999999999999999998 343 5678889999999999999999
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 90 KSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 90 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
.++++++..+|+++.+++.+|.++..+|++++|+..|.+++.++|.+.
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999999999999999999999999999999999984
No 90
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.78 E-value=1.1e-17 Score=101.53 Aligned_cols=107 Identities=23% Similarity=0.333 Sum_probs=87.2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 25 NPLS-FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 25 ~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
+|.. ..+++.+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++...|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 4544 677888888888888888888888888888876 567777888888888888888888888888888888
Q ss_pred hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcc
Q 031170 104 RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~ 137 (164)
..++.+|.++...|++++|+..+.+++...|.+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 8888888888888888888888888888888773
No 91
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.78 E-value=5.5e-19 Score=116.63 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=114.5
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh----------hhhHHHH
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE----------ARDVRFI 74 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------~~~~~~~ 74 (164)
....|++++|.+.++......+.....+..+|.+++..|++++|+..|.++++..|....... ...++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 455678888888887777767777888999999999999999999999999999887321000 0278889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhh
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRT 145 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 145 (164)
+|.++...|++++|+.++++++..+|.+..+++.+|.++...|++++|+..|++++.+.|.+......+..
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998544444443
No 92
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.8e-18 Score=126.95 Aligned_cols=135 Identities=16% Similarity=0.056 Sum_probs=84.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|..........++..+|.++..
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 44555566666666666666666666666666666666666666666666666666665521110002266666666666
Q ss_pred ---ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 ---QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++++|+.++++++..+|++..++..+|.++...|++++|+..+++++...|.+
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 6666677666666666666666666666666666677777777777776666665
No 93
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.9e-18 Score=125.67 Aligned_cols=132 Identities=18% Similarity=0.142 Sum_probs=125.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++.
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~ 383 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------APEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------CHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999998 6889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCch------hhhhHHHHHHh---cCCHHHHHHHHHHHHhhCCCcch
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFR------PYFCKGMIYSL---LDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~~~~~---~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
..|++++|+.++++++...|.+.. +++.+|.++.. .|++++|+..+++++...|.+..
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 450 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence 999999999999999999999866 89999999999 99999999999999999999843
No 94
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.77 E-value=4.7e-18 Score=101.42 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=101.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Q 031170 24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-- 101 (164)
Q Consensus 24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-- 101 (164)
.+|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++...|.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 36888999999999999999999999999999999998 6788999999999999999999999999999999
Q ss_pred CchhhhhHHHHHHhc-CCHHHHHHHHHHHHhhCCCc
Q 031170 102 DFRPYFCKGMIYSLL-DRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 102 ~~~~~~~~~~~~~~~-~~~~~A~~~l~~~~~~~p~~ 136 (164)
+..+++.+|.++... |++++|+.++.+++...|.+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999999876
No 95
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.77 E-value=2.5e-19 Score=132.38 Aligned_cols=137 Identities=11% Similarity=0.056 Sum_probs=106.6
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---------hhhhhhHHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---------LKEARDVRFIMAQ 77 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~la~ 77 (164)
..+++++|+..|+.++...|....++..+|.+++..|+|++|+..|++++++.|.... ......++..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888888888888888888888887310 0001467778888
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
++..+|++++|+.+|++++..+|++..+++.+|.++..+|++++|+..|++++.++|.+......+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 391 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 888888999998888888888888888888888888888888888888888888888874433333
No 96
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.77 E-value=1.1e-17 Score=100.65 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFC 108 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 108 (164)
+..++.+|.++...|++++|+..+++++..+|. ...++..+|.++...|++++|+.++++++..+|.+..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHH
Confidence 456777777777777777777777777777776 56677777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 109 KGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 109 ~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+|.++...|++++|+..+++++...|.+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 7777777777777777777777777776
No 97
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.77 E-value=1.1e-17 Score=102.67 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---chhhh
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---FRPYF 107 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 107 (164)
+++.+|.++...|++++|+..|+++++..|+... ...+++.+|.++...|++++|+.+|++++..+|++ +.+++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY---TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 4566777777777777777777777777766211 01566677777777777777777777777777776 56677
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|.++...|++++|+..|++++...|++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 77777777777777777777777777766
No 98
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-17 Score=101.94 Aligned_cols=112 Identities=14% Similarity=-0.012 Sum_probs=106.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++.
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~ 95 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------FIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------chHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999998 6889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
..|++++|+.++++++..+|.+..++..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999987764
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.77 E-value=1.7e-17 Score=110.50 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH----------------HHHHHHHccCHHHHHHH
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI----------------MAQIKFLQKNVDEALKS 91 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~ 91 (164)
+++.++..|..++..|++++|+..|+++++.+|+ +..+++. +|.++...|++++|+.+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5677889999999999999999999999999998 7788888 99999999999999999
Q ss_pred HHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 92 YQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 92 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
|++++..+|++..+++.+|.++...|++++|+..|++++.++|++..
T Consensus 77 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 77 YKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999999943
No 100
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.76 E-value=2e-17 Score=101.13 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=106.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++..
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------YSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------CHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999998 68889999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCH
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRN 119 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 119 (164)
.|++++|+.++++++..+|.+..++..++.++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988874
No 101
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.76 E-value=1.7e-18 Score=110.79 Aligned_cols=108 Identities=13% Similarity=0.058 Sum_probs=97.9
Q ss_pred chhhhhcCCchHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAG------------------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN 63 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 63 (164)
|..++..|+|++|+..|.+++.. +|.+..++..+|.++...|++++|+..++++++++|.
T Consensus 18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-- 95 (162)
T 3rkv_A 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-- 95 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc--
Confidence 67889999999999999999999 7777789999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc-hhhhhHHHHHHh
Q 031170 64 KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF-RPYFCKGMIYSL 115 (164)
Q Consensus 64 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 115 (164)
...+++.+|.++...|++++|+.+|++++..+|++. .+...++.+...
T Consensus 96 ----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 96 ----NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999988 545555555443
No 102
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.76 E-value=3.5e-18 Score=108.27 Aligned_cols=97 Identities=10% Similarity=-0.018 Sum_probs=52.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHhh-------cccc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL-------SFE-----ALFENALLMDRCGEGEAVIKRLEEALEI-------AEDG 62 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~ 62 (164)
|..++..|+|++|+..|++++..+|+ +.. +|.++|.++..+|+|++|+..+.+++++ +|+
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd- 96 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD- 96 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-
Confidence 34555666666666666666666666 222 5555555555555555555555555555 554
Q ss_pred chhhhhhhHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 63 NKLKEARDVR----FIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 63 ~~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
...+| +.+|.++..+|++++|+.+|+++++.+|++..
T Consensus 97 -----~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 97 -----EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred -----hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 44444 55555555555555555555555555554444
No 103
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.76 E-value=9.7e-18 Score=106.24 Aligned_cols=110 Identities=18% Similarity=0.113 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK------LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE---- 98 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 98 (164)
...+..+|..++..|+|++|+..|+++++++|+... ......+|..+|.++..+|+|++|+.+|++++..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999998211 1112348899999999999999999999999999
Q ss_pred ---CCCCchhh----hhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 99 ---DPNDFRPY----FCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 99 ---~p~~~~~~----~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
+|++..+| +.+|.++..+|++++|+..|++++.+.|++..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999 99999999999999999999999999999843
No 104
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.76 E-value=6.3e-18 Score=104.84 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=91.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|. ...++..+|.++.
T Consensus 15 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~ 88 (137)
T 3q49_B 15 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999998 7889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCC
Q 031170 81 LQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~ 101 (164)
..|++++|+.+|++++..+|+
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999887
No 105
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.75 E-value=1.2e-17 Score=123.41 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=108.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK 66 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 66 (164)
|..++..|+|++|+..|++++...|.+ ..++..+|.++..+|++++|+..++++++++|.
T Consensus 275 G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----- 349 (457)
T 1kt0_A 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA----- 349 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----
Confidence 677899999999999999999999998 689999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH
Q 031170 67 EARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE 125 (164)
Q Consensus 67 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 125 (164)
+..+++.+|.++..+|++++|+.+|++++..+|++..++..++.++...++++++...
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999887654
No 106
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.75 E-value=2.9e-18 Score=104.17 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=74.3
Q ss_pred hcCCchHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 7 EMGKTQDARNVFEEILAG---NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
..|++++|+..|+++++. +|+++.++..+|.++..+|++++|+..|+++++.+|+ +..++..+|.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcC
Confidence 357888888888888888 5777888888888888888888888888888888887 6778888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhh
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYF 107 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~ 107 (164)
++++|+.++++++...|+++....
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHH
Confidence 888888888888888888766543
No 107
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-17 Score=100.48 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=103.2
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 23 AGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 23 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
...|.+...++.+|.++...|++++|+..|+++++..|+... ...++..+|.++...|++++|+.++++++..+|.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 456788999999999999999999999999999999987110 16788899999999999999999999999999999
Q ss_pred chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
..+++.+|.++...|++++|+..+++++...|.+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 999999999999999999999999999999999843
No 108
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=2.4e-18 Score=119.59 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=112.7
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+ ...++..+|.++.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999998 7889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhh-------------------------------hHHHHHHhcCCHHHHHHHHHHH
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYF-------------------------------CKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~-------------------------------~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
..|++++|+..|++++..+|++...+. .++. ...|++++|++.++++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRN 161 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGG
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence 999999999999999998886532211 1111 1257888999999999
Q ss_pred HhhCCCcch
Q 031170 130 RQLSPKKFE 138 (164)
Q Consensus 130 ~~~~p~~~~ 138 (164)
+...|.+..
T Consensus 162 l~~~p~~~~ 170 (281)
T 2c2l_A 162 HEGHEDDGH 170 (281)
T ss_dssp GTTTSCHHH
T ss_pred hccccchhh
Confidence 999998743
No 109
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.75 E-value=2.2e-18 Score=122.75 Aligned_cols=129 Identities=14% Similarity=0.032 Sum_probs=85.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF-----------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 64 (164)
|..++..|+|++|+..|++++...|++. .++..+|.++..+|+|++|+..++++++.+|.
T Consensus 186 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~--- 262 (338)
T 2if4_A 186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK--- 262 (338)
T ss_dssp HHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 5678899999999999999999999887 48999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH-HhcCCHHHHHHHHHHHHhhCCCc
Q 031170 65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY-SLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+..+++.+|.++..+|++++|+.+|++++..+|++..++..++.+. ...+..+++...|.+++...|.+
T Consensus 263 ---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 263 ---NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 7889999999999999999999999999999999999999988884 44677888999999999999887
No 110
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.74 E-value=6.7e-17 Score=99.15 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=99.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|.++...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+... ...+++.+|.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHH
Confidence 6788999999999999999999999999 79999999999999999999999999999998211 16788999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 117 (164)
+...|++++|+.+|++++..+|++..+......+....+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999998877666555544433
No 111
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.74 E-value=1.4e-16 Score=95.62 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=100.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++..
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999998 68889999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 113 (164)
.|++++|+.++++++..+|.+..++..++.+.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999998888877764
No 112
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=1.4e-17 Score=114.20 Aligned_cols=134 Identities=18% Similarity=0.119 Sum_probs=115.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch--hhhhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK--LKEARD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~ 70 (164)
+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+++++++....... ......
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 128 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 467889999999999999999987 4666778999999999999999999999999998411100 001577
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIE--------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++...|
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998 666678899999999999999999999999998743
No 113
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.6e-16 Score=111.56 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhh-HHHHHHHHHHHccCHHHHH
Q 031170 12 QDARNVFEEILA-GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARD-VRFIMAQIKFLQKNVDEAL 89 (164)
Q Consensus 12 ~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~ 89 (164)
++|+..|++++. ..|++..+|..+|.++...|++++|...|+++++..|. ... ++..+|.++...|++++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHH
Confidence 888999999988 68888888888888888889999999999999888886 444 7777888888888888888
Q ss_pred HHHHHHHHhCCCCchhhhhHHHHHHh-cCCHHHHHHHHHHHHhhCCCc
Q 031170 90 KSYQELEIEDPNDFRPYFCKGMIYSL-LDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 90 ~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|++++...|.+...+...+.+... .|++++|+..|++++...|.+
T Consensus 155 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 155 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 88888887777776666555544332 577777777777777777776
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.74 E-value=2.4e-16 Score=95.44 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=103.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++..|. ...++..+|.++..
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~ 89 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999987 67888999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 117 (164)
.|++++|+.++++++..+|.+..++..++.++...|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998887654
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.74 E-value=2.2e-17 Score=107.07 Aligned_cols=124 Identities=16% Similarity=0.007 Sum_probs=109.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLM-DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
+|.++...|++++|+..|++++...| ++..+..++.+. ...++..+|+..++++++.+|+ +..+++.+|.++
T Consensus 46 la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~------~~~~~~~la~~~ 118 (176)
T 2r5s_A 46 KADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPD------NFELACELAVQY 118 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT------CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 46788999999999999999999999 888776666553 3334556789999999999998 789999999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC--chhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 80 FLQKNVDEALKSYQELEIEDPND--FRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
...|++++|+.+|++++..+|.. ..++..++.++...|+.++|+..|++++.
T Consensus 119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999986 55899999999999999999999999875
No 116
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.3e-17 Score=101.22 Aligned_cols=107 Identities=12% Similarity=-0.018 Sum_probs=99.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS---FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
|..+...|++++|+..|++++...|++ ..++..+|.++...|++++|+..++++++..|. ...++..+|.+
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~ 108 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------DVKALYRRSQA 108 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------CHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------CHHHHHHHHHH
Confidence 667889999999999999999999998 889999999999999999999999999999998 68899999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYS 114 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (164)
+...|++++|+.+|++++..+|++..++..++.+..
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999988877777654
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=8.5e-17 Score=112.98 Aligned_cols=125 Identities=13% Similarity=0.050 Sum_probs=110.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
|.++...|++++|+..|+++++..|.++. +|..+|.++...|++++|+..|+++++..|. ...++...+.+..
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~ 179 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH
Confidence 55677889999999999999999999987 8999999999999999999999999999887 4556665555543
Q ss_pred H-ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 81 L-QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 81 ~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
. .|++++|+.+|++++..+|+++.+|..++.++...|++++|+..|++++..
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 699999999999999999999999999999999999999999999999985
No 118
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=2.7e-17 Score=118.47 Aligned_cols=135 Identities=16% Similarity=0.057 Sum_probs=118.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPL-------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.+++++++..+..+.......++.
T Consensus 149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 467889999999999999999997443 3457899999999999999999999999999876544434456888
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEI-----ED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~-----~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.+|.+|..+|++++|+.++++++. .+ |....++..+|.++...|++++|+.++++++.+.+.
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 45 677788999999999999999999999999988543
No 119
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=3.6e-17 Score=117.78 Aligned_cols=131 Identities=11% Similarity=0.037 Sum_probs=113.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAG---NPL---SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFI 74 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~ 74 (164)
|..+...|++++|+..|++++.. .|+ .+.++..+|.++...|++++|+.++++++++.+..+. ......++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 56788999999999999999987 333 4578999999999999999999999999999876543 2234567889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCc------hhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPNDF------RPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
+|.++...|++++|+.+|++++...+... .++..+|.++...|++++|+.++++++.+
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765443 47889999999999999999999999994
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.73 E-value=4.9e-17 Score=99.45 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=44.8
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh-hhhhHHHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK-EARDVRFIMAQIKFL 81 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~la~~~~~ 81 (164)
.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+++++++..|...... ....++..+|.++..
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554444444444455555555555555555555544444311000 003344444444444
Q ss_pred ccCHHHHHHHHHHHHHhCC
Q 031170 82 QKNVDEALKSYQELEIEDP 100 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p 100 (164)
.|++++|+.+|++++...|
T Consensus 92 ~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 92 EEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCC
T ss_pred hccHHHHHHHHHHHHHhCC
Confidence 5555555555544444444
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=3.9e-17 Score=111.96 Aligned_cols=127 Identities=21% Similarity=0.183 Sum_probs=111.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------ccccch
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEI--------AEDGNK 64 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~ 64 (164)
+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+++++++. .|.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--- 167 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN--- 167 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH---
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH---
Confidence 467899999999999999999998 4677888999999999999999999999999998 443
Q ss_pred hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------------------------
Q 031170 65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED--------------------------------------------- 99 (164)
Q Consensus 65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------------- 99 (164)
...++..+|.++...|++++|+.++++++...
T Consensus 168 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 168 ---VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999999752
Q ss_pred ----CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 100 ----PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 100 ----p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
|....++..+|.++...|++++|+.+++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3334567889999999999999999999998753
No 122
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=114.96 Aligned_cols=135 Identities=20% Similarity=0.152 Sum_probs=113.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc--chhhhhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGN--------PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG--NKLKEARD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~ 70 (164)
+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+++++++..... ........
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3678899999999999999999874 5567789999999999999999999999999982111 00011567
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------------------------CCC
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIE-------------------------------------------------DPN 101 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------------------------------------------~p~ 101 (164)
++..+|.++...|++++|+.++++++.. .|.
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT 276 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch
Confidence 8889999999999999999999999974 355
Q ss_pred CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 102 DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
...++..+|.++...|++++|+.++++++.+.|.
T Consensus 277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 277 VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 5677889999999999999999999999998775
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=4.9e-17 Score=114.20 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=111.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL--S----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
|.+|...|++++|+.+|++++...+. + ..++..+|.++.. |++++|+.+|++++.+.+..+.......++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 56788889999999999999987432 2 4578899999988 999999999999999987654333345678899
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCc------hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDF------RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|.++..+|++++|+.+|++++...|... ..++.+|.++...|++++|+..|++++ ..|..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 9999999999999999999998866543 366778888988999999999999999 88876
No 124
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=6.1e-17 Score=116.54 Aligned_cols=135 Identities=15% Similarity=-0.005 Sum_probs=118.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPL-------SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++++.+..+.......++.
T Consensus 147 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467889999999999999999987543 2456889999999999999999999999998765443333467788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHH-----hCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEI-----EDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.+|.+|..+|++++|+.++++++. .+|....+++.+|.++...|++++|+.++++++.+.+.
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 77878888999999999999999999999999998665
No 125
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=117.08 Aligned_cols=143 Identities=11% Similarity=0.034 Sum_probs=117.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhh--hhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG---------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLK--EAR 69 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~ 69 (164)
||.++...|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+...... ..+
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 467889999999999999999875 677788899999999999999999999999999865422111 134
Q ss_pred hHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh---cCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 70 DVRFIMAQIKFL--QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL---LDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 70 ~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
.++..+|.++.. .+++++|+.+|++++..+|+++.++..++.++.. .++.++|+..+++++.++|.+......+
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l 215 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 566667766654 4579999999999999999999999988887554 6778899999999999999984433333
No 126
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.71 E-value=4.5e-17 Score=117.35 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=86.6
Q ss_pred chhhhhcCCchHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh
Q 031170 2 ARLLSEMGKTQDARNVFEEILA----------------GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL 65 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 65 (164)
|..++..|+|++|+..|++++. ..|.+..++..+|.++..+|++++|+.+++++++++|.
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---- 305 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---- 305 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch----
Confidence 5567777788888888888777 56666777777777777777777777777777777776
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHH
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKE 124 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~ 124 (164)
...+++.+|.++...|++++|+.+|++++..+|++..++..++.++...++.+++..
T Consensus 306 --~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 --NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777777777777777777776666665543
No 127
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.71 E-value=3.9e-17 Score=103.18 Aligned_cols=135 Identities=15% Similarity=0.038 Sum_probs=113.7
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSF------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.+++++++..+..+.......++..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 36788899999999999999998765432 478899999999999999999999999988765444334667889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
+|.++...|++++|+.++++++...+. ....+..+|.++...|++++|+..+.+++.+...
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876432 2346788999999999999999999999887543
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.71 E-value=5.2e-16 Score=98.80 Aligned_cols=105 Identities=14% Similarity=0.052 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhh
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYF 107 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 107 (164)
.+..+..+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++..+|.+..+++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 85 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3567899999999999999999999999999998 6889999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhCCCcch
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~ 138 (164)
.+|.++...|++++|+..+.+++...|.+..
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 116 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVKPHDKD 116 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999843
No 129
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=113.14 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=113.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc--chhhhhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAG--------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG--NKLKEARD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~ 70 (164)
+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...... ........
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 367889999999999999999994 67778899999999999999999999999999985211 00111467
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIED--------PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++..
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999874 455677889999999999999999999999988
No 130
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=8.9e-16 Score=105.64 Aligned_cols=122 Identities=15% Similarity=0.094 Sum_probs=104.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+.+|+++++.+ ...++..+|
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg 81 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHH
Confidence 36678888999999999999988 7888899999999999 999999999999998874 267788889
Q ss_pred HHHHH----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170 77 QIKFL----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 77 ~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p 134 (164)
.++.. .+++++|+.+|++++.. +++.+++.+|.++.. .+++++|+.++++++...+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence 89888 89999999999988876 477888888888888 8889999999998888764
No 131
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.70 E-value=2.7e-16 Score=96.06 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----
Q 031170 27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND---- 102 (164)
Q Consensus 27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---- 102 (164)
..+..++.+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++...|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 34678999999999999999999999999999998 67889999999999999999999999999998876
Q ss_pred ---chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 103 ---FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 103 ---~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..+++.+|.++...|++++|+..+++++...|+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 778999999999999999999999999999984
No 132
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=9.4e-17 Score=111.88 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=117.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..+++++..+|+........+..+...++.++|+..+++++..+|+ +..+++.+|.++.
T Consensus 157 la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~ 230 (287)
T 3qou_A 157 LAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLH 230 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHH
Confidence 4778999999999999999999999987777777888888999999999999999999999 7899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCC--chhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 81 LQKNVDEALKSYQELEIEDPND--FRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
..|++++|+..|++++..+|++ ..++..++.++...|+.++|+..+++++.
T Consensus 231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999998 88899999999999999999999999875
No 133
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.70 E-value=6.1e-17 Score=98.24 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=84.7
Q ss_pred HcCCcHHHHHHHHHHHhh---ccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC
Q 031170 41 RCGEGEAVIKRLEEALEI---AEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD 117 (164)
Q Consensus 41 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 117 (164)
.+|++++|+..|+++++. +|. ...++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence 468999999999999999 576 78899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcchhhhH
Q 031170 118 RNAEAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 118 ~~~~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
++++|+..+++++...|.+.....+
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999999999999999998444333
No 134
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.70 E-value=7e-17 Score=102.12 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=80.9
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEG----------EAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
.+.+.|++|+..+++++..+|+++++|+.+|.++...+++ ++|+..|+++++++|+ ...+++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC------cHHHHHHH
Confidence 4567899999999999999999999999999999998875 4999999999999998 78889999
Q ss_pred HHHHHHcc-----------CHHHHHHHHHHHHHhCCCCc
Q 031170 76 AQIKFLQK-----------NVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 76 a~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~ 103 (164)
|.+|..+| ++++|+.+|++++.++|++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99998875 78888888888888888764
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.70 E-value=2.7e-16 Score=109.63 Aligned_cols=132 Identities=15% Similarity=0.074 Sum_probs=98.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chhhhhhhHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKLKEARDVRFI 74 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 74 (164)
|.++...|++++|+..|++++...+.. ..++..+|.+|..+|++++|+.+++++++..... ........++..
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 445666778889999999888854332 3367888888889999999999998888654322 111123557778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCC-HHHHHHHHHHHHhhC
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDR-NAEAKEEFAKYRQLS 133 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~-~~~A~~~l~~~~~~~ 133 (164)
+|.+|..+|++++|+.++++++...+.. ..+++.+|.++..+|+ +++|+..+++++.+.
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8889999999999999998888765432 4567888888888884 588999888888765
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.69 E-value=2.6e-16 Score=109.37 Aligned_cols=105 Identities=12% Similarity=-0.015 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh
Q 031170 26 PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 26 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
|.++.++..+|.++...|++++|+..|+++++.+|. ...++..+|.++...|++++|+..+++++..+|++..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 677889999999999999999999999999999998 78899999999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 106 YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 106 ~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++.+|.++...|++++|+..|.+++.+.|++
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999998876
No 137
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=7.9e-17 Score=113.15 Aligned_cols=134 Identities=10% Similarity=0.053 Sum_probs=114.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
|.++...|++++|+..|.+++...+.. ..++..+|.++..+|++++|+.+|++++++.+..+.......++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788899999999999999986532 45788999999999999999999999999977655443346778899
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|.+|.. |++++|+.+|++++...|.. ..++..+|.++..+|++++|+.+|++++.+.|..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 999999 99999999999999987653 4567889999999999999999999999987654
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.69 E-value=7.6e-16 Score=99.58 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=93.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCc--HHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALL-MDRCGEG--EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++|+..++++++.+|. ...++..+|.
T Consensus 50 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 123 (177)
T 2e2e_A 50 LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN------EITALMLLAS 123 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC------cHHHHHHHHH
Confidence 46788999999999999999999999999999999999 8899999 9999999999999998 7889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFRPY 106 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 106 (164)
++...|++++|+.+|++++..+|.+....
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999986543
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.68 E-value=5.2e-16 Score=108.18 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=83.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFI 74 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~ 74 (164)
|.++...|++++|+..+++++...+.. ..++..+|.++..+|++++|+.+++++++....... ......++..
T Consensus 122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 344556677777777777777654332 446677777777777777777777777743221110 0001246667
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHH-HHHHHHHHhhC
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEA-KEEFAKYRQLS 133 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A-~~~l~~~~~~~ 133 (164)
+|.+|..+|++++|+.++++++...+. ...+++.+|.++...|++++| ..++++++.+.
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 777777777777777777777665322 134566777777777777777 66677776553
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.68 E-value=3.5e-16 Score=102.79 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=106.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhhhhhHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILA------GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKEARDVRF 73 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~ 73 (164)
+|.++...|++++|+..+++++. ..|....++..+|.++...|++++|+..++++++.....+ .......++.
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 36678889999999999999988 4455667888999999999999999999999999844322 1112456677
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+..+.+++.+...
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988653322 123478899999999999999999999877543
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.68 E-value=2.4e-16 Score=108.78 Aligned_cols=136 Identities=13% Similarity=0.029 Sum_probs=116.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|.++...|+|++|.+.|+.++...|++. +.+.+|.++.+.++|++|+..|+++....+.. ....+++.+|.++..
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~----~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF----LAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc----cHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998 99999999999999999999999776643210 014588999999999
Q ss_pred ccCHHHHHHHHHHHHHhC--CC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 82 QKNVDEALKSYQELEIED--PN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
.|++++|+.+|++++... |. ..++++.+|.++..+|+.++|+..|++++..+|. ......+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 999999999999998653 44 5578999999999999999999999999999998 4444443
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=9e-16 Score=112.85 Aligned_cols=126 Identities=19% Similarity=0.150 Sum_probs=101.9
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc--
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-- 82 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-- 82 (164)
+...|++++|+.++++++..+|+++.++..+|.++...|++++|+..++++++..|+ ...++..+|.+|..+
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN------NAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999998 667777777776543
Q ss_pred -----------------cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 83 -----------------KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 83 -----------------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+.+++|+..+++++..+|.+..++..+|.++...|++++|+..|++++.+.|.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 346778888888888888888888888888888888888888888888887765
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.68 E-value=5.9e-16 Score=92.13 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=90.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|... ...++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~l~~~~~ 87 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY----NKDVWAAKADALR 87 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT----CHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHH
Confidence 367888999999999999999999999999999999999999999999999999999988611 2678889999999
Q ss_pred Hc-cCHHHHHHHHHHHHHhCCCCc
Q 031170 81 LQ-KNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 81 ~~-~~~~~A~~~~~~~~~~~p~~~ 103 (164)
.. |++++|+.++++++...|.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 99 999999999999999988764
No 144
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.67 E-value=2.1e-15 Score=100.03 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=101.3
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------hhhhhhh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN----------KLKEARD 70 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~ 70 (164)
+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++..|... .......
T Consensus 43 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 122 (213)
T 1hh8_A 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH
Confidence 467889999999999999999999999999999999999999999999999999999887633 1111348
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
++..+|.++...|++++|+.+|++++...|++.. +..++++..+.+.....|
T Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH------------SKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG------------GHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc------------chHHHHHHHHHhcccccc
Confidence 8899999999999999999999999999998643 334455555554444333
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=7.3e-15 Score=102.38 Aligned_cols=133 Identities=13% Similarity=0.044 Sum_probs=112.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
+..+...|+|++|++.+.+++...|.... .++.+|.++...|++++|+..++++++..+..........++..+
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 34577899999999999999998877543 356788999999999999999999999876544333335678899
Q ss_pred HHHHHHccCHHHHHHHHHHHH---HhCCCCc----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 76 AQIKFLQKNVDEALKSYQELE---IEDPNDF----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~---~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
|.+|..+|++++|+.+|++++ ...|++. .+++.+|.++...|++++|+.++++++.+.+
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 5556533 5788999999999999999999999998754
No 146
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=3.3e-16 Score=112.71 Aligned_cols=130 Identities=15% Similarity=0.029 Sum_probs=110.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNP------LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFI 74 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~ 74 (164)
|..+...|++++|+..|++++...+ ....++..+|.++...|++++|+.+++++++..+.... ......++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 5667889999999999999998732 24568899999999999999999999999999876443 2224667789
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
+|.++...|++++|+.+|++++...+. ...++..+|.++...|++++|+.++++++.
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999986432 234678899999999999999999999999
No 147
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.66 E-value=2.6e-16 Score=113.80 Aligned_cols=136 Identities=13% Similarity=0.005 Sum_probs=117.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
+|.++...|++++|+.++++++...|.... ++..+|.++...|++++|+..+++++...+..........++..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367889999999999999999998765433 88999999999999999999999999998865443334678889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+.-
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999875543 3478899999999999999999999999998664
No 148
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=8.5e-15 Score=100.73 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=65.4
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH--
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-- 81 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-- 81 (164)
.+++++|+.+|++++.. +++.+++.+|.++.. .+++++|+.+|+++++.++ ..++..+|.++..
T Consensus 91 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--------GDGCTILGSLYDAGR 160 (273)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHcCC
Confidence 55555555555555554 255555555555555 5555555555555555432 3445555555555
Q ss_pred --ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170 82 --QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 82 --~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p 134 (164)
.+++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.++++++...|
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 55666666666665554 234555566666666 6666666666666665544
No 149
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.66 E-value=2.1e-15 Score=108.64 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc----------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN----------KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
...+..+|..++..|++++|+..|+++++..+... .......++..+|.++..+|++++|+.++++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999433210 01115788889999999999999999999999999
Q ss_pred CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhhhhhh
Q 031170 99 DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLS 148 (164)
Q Consensus 99 ~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~ 148 (164)
+|++..+++.+|.++..+|++++|+..|++++.+.|.+......+.....
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998544444444333
No 150
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=112.27 Aligned_cols=135 Identities=15% Similarity=0.035 Sum_probs=116.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
+|.++...|++++|+.++++++...|.... ++..+|.++...|++++|+.+++++++..+..+.......++..
T Consensus 193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 272 (406)
T 3sf4_A 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272 (406)
T ss_dssp HHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence 367889999999999999999988665443 88999999999999999999999999998775444334677889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875543 457889999999999999999999999988543
No 151
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=3e-16 Score=109.73 Aligned_cols=134 Identities=15% Similarity=0.028 Sum_probs=104.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLS------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+..++++++..+..........++..+
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 567788889999999999888775443 23788888899999999999999999888877644333336677788
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999999998888765543 336778888888899999999999998887764
No 152
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=111.37 Aligned_cols=131 Identities=12% Similarity=0.041 Sum_probs=108.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+.++++++...+..........++..+|.
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 6778899999999999999999999884 578899999999999999999999998886543333334677788899
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCC------chhhhhHHHHHHhcCC--------------------HHHHHHHHHHHHh
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPND------FRPYFCKGMIYSLLDR--------------------NAEAKEEFAKYRQ 131 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~--------------------~~~A~~~l~~~~~ 131 (164)
++...|++++|+.++++++...|.. ..++..+|.++...|+ +++|+..+.+++.
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888876653 3367788888888888 8888888888877
Q ss_pred h
Q 031170 132 L 132 (164)
Q Consensus 132 ~ 132 (164)
+
T Consensus 176 ~ 176 (406)
T 3sf4_A 176 L 176 (406)
T ss_dssp H
T ss_pred H
Confidence 6
No 153
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=7.9e-15 Score=89.64 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK 109 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 109 (164)
.+++.+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++...|.+...++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 75 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 46888999999999999999999999999887 677888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 110 GMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 110 ~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|.++...|++++|+..+.+++...|.+
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999987
No 154
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=9.2e-16 Score=110.89 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=115.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
|..+...|++++|+..|++++...|+++ .++..+|.++...|++++|+..++++++.............++..+|.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 5678899999999999999999999987 578999999999999999999999999985332222225788889999
Q ss_pred HHHHccCHHHHHHHHHHHHHh------CCCCchhhhhHHHHHHhcCC-----------------HHHHHHHHHHHHhhC
Q 031170 78 IKFLQKNVDEALKSYQELEIE------DPNDFRPYFCKGMIYSLLDR-----------------NAEAKEEFAKYRQLS 133 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~-----------------~~~A~~~l~~~~~~~ 133 (164)
++...|++++|+.++++++.. .|....++..+|.++...|+ +++|+.++.+++.+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 44556688999999999999 999999999998764
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=7.7e-15 Score=102.93 Aligned_cols=121 Identities=10% Similarity=-0.004 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH----HHc---
Q 031170 12 QDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK----FLQ--- 82 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~----~~~--- 82 (164)
++|+..++++|..+|++..+|...+.++...+ ++++++..+.+++..+|. +..+|...+.+. ...
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHhcccc
Confidence 46666666666666666666666666666666 666666666666666666 556666555555 554
Q ss_pred cCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH--HHHHHHHHHHhhCCCcch
Q 031170 83 KNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA--EAKEEFAKYRQLSPKKFE 138 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~A~~~l~~~~~~~p~~~~ 138 (164)
+++++++.++.+++..+|++..+|..++.++...|.++ ++++.+.+++..+|.++.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 56666666666666666666666666666666666655 666666666666666633
No 156
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=2.2e-15 Score=105.29 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=114.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF----EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
|..+...|++++|+..|++++...|+++ .++..+|.++...|++++|+..+++++...+..+.......++..+|.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 6778999999999999999999999984 678899999999999999999999999885443333235678889999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCch------hhhhHHHHHHhcCC--------------------HHHHHHHHHHHHh
Q 031170 78 IKFLQKNVDEALKSYQELEIEDPNDFR------PYFCKGMIYSLLDR--------------------NAEAKEEFAKYRQ 131 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~--------------------~~~A~~~l~~~~~ 131 (164)
++...|++++|+.++++++...|.... ++..+|.++...|+ +++|+..+.+++.
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987665433 78899999999999 9999999999887
Q ss_pred hC
Q 031170 132 LS 133 (164)
Q Consensus 132 ~~ 133 (164)
..
T Consensus 172 ~~ 173 (338)
T 3ro2_A 172 LV 173 (338)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.64 E-value=2e-15 Score=105.20 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=109.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEA------LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
..+...|++++|+..+++++...+..+.. +..+|.++...+++++|+.+++++++..+..........++..+|
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 45678899999999999999988877662 335889999999999999999999997655433222345678999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhC-------CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 77 QIKFLQKNVDEALKSYQELEIED-------PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|..+|++++|+.+|++++... +....+++.+|.++...|++++|+.++++++.+.+..
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999531 1223478899999999999999999999999886543
No 158
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.63 E-value=2.4e-14 Score=100.44 Aligned_cols=145 Identities=13% Similarity=0.020 Sum_probs=128.0
Q ss_pred chhhhhcC--CchHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---CCcHHHHHHHHHHHhhccccchhhhhhhHH
Q 031170 2 ARLLSEMG--KTQDARNVFEEILAGNPLSFEALFENALLM----DRC---GEGEAVIKRLEEALEIAEDGNKLKEARDVR 72 (164)
Q Consensus 2 a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 72 (164)
+.++...| ++++++..+++++..+|.+..+|...+.++ ... +++++++.++.++++.+|. +..+|
T Consensus 74 ~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW 147 (306)
T 3dra_A 74 FNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVW 147 (306)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHH
Confidence 45666777 999999999999999999999999999999 778 8999999999999999999 88999
Q ss_pred HHHHHHHHHccCHH--HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH------HHHHHHHHHHhhCCCcchhhhHhh
Q 031170 73 FIMAQIKFLQKNVD--EALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA------EAKEEFAKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 73 ~~la~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~A~~~l~~~~~~~p~~~~~~~~~~ 144 (164)
...+.+....|.++ +++.++.+++..+|.+..+|..++.++...+... ++++++.+++..+|.+.....+..
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 99999999999999 9999999999999999999999999998876421 378899999999999965555555
Q ss_pred hhhhhhhc
Q 031170 145 TPLSRMKL 152 (164)
Q Consensus 145 ~~~~~~~~ 152 (164)
.++.....
T Consensus 228 ~ll~~~~~ 235 (306)
T 3dra_A 228 GIHERFDR 235 (306)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 56665554
No 159
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5.2e-15 Score=111.87 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=120.5
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-CHHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-NVDE 87 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~ 87 (164)
++++++.+++++..+|++..+|...+.++...+ ++++++..+.++++.+|. +..+|...+.+....| .+++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW~~R~~~l~~l~~~~~~ 162 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAE 162 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccHHHHHHHHHHHcCCChHH
Confidence 999999999999999999999999999999999 669999999999999999 7899999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCchhhhhHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCcchhhhHhhhhhh
Q 031170 88 ALKSYQELEIEDPNDFRPYFCKGMIYSLL--------------DRNAEAKEEFAKYRQLSPKKFEVEGYLRTPLS 148 (164)
Q Consensus 88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~~ 148 (164)
+++++.++++.+|.+..+|..++.++... +.++++++++.+++..+|++.....+.+..+.
T Consensus 163 el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 99999999999999999999999998875 55799999999999999999555445444443
No 160
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.63 E-value=4e-15 Score=99.28 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=106.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG----EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
||.++...+++++|+.+|+++++. +++.+++.+|.++.. + ++++|+.+|+++++. . .+.++..+|
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g------~~~a~~~Lg 92 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--G------SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--T------CHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--C------CHHHHHHHH
Confidence 467788899999999999999874 688999999999888 6 899999999999764 3 477888999
Q ss_pred HHHHH----ccCHHHHHHHHHHHHHhCC--CCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCCCc
Q 031170 77 QIKFL----QKNVDEALKSYQELEIEDP--NDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 77 ~~~~~----~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|.. .+++++|+.+|++++...| ..+.+++.+|.+|.. .+++++|+.+|+++... |.+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~ 161 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT 161 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC
Confidence 99987 8899999999999998877 348889999999998 88999999999999888 444
No 161
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.62 E-value=6.3e-15 Score=88.84 Aligned_cols=86 Identities=13% Similarity=0.015 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHH
Q 031170 12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKS 91 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 91 (164)
++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|. ...++..+|.++...|++++|+.+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999998 678889999999999999999999
Q ss_pred HHHHHHhCCCCc
Q 031170 92 YQELEIEDPNDF 103 (164)
Q Consensus 92 ~~~~~~~~p~~~ 103 (164)
|++++...|...
T Consensus 76 ~~~al~~~~~~~ 87 (115)
T 2kat_A 76 WESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHhccccc
Confidence 999998877543
No 162
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=2e-14 Score=107.71 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=106.2
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH-H
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF-EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI-K 79 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~-~ 79 (164)
|..+...|++++|...|+++++..|.++ .+|..++.++...|++++|+..|+++++..|. ....+...+.+ +
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHH
Confidence 4456678888889999999888888875 58888888888888888888888888887765 34444444444 3
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
...|++++|..+|+++++.+|+++..|..++.++...|+.++|...|++++...|.+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 468999999999999999999999999999999999999999999999999887665
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.60 E-value=2.7e-14 Score=93.71 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=104.7
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..+++++......+.......++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45689999999966655554346788999999999999999999999999999766544444457788899999999999
Q ss_pred HHHHHHHHHHHHHh---CCCC----chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 85 VDEALKSYQELEIE---DPND----FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 85 ~~~A~~~~~~~~~~---~p~~----~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
+++|+.++++++.. .+++ ..++..+|.++...|++++|+..+.+++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999987 3422 3457889999999999999999999998764
No 164
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.60 E-value=2.3e-15 Score=95.18 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=85.1
Q ss_pred HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCchhhhhH
Q 031170 40 DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNV----------DEALKSYQELEIEDPNDFRPYFCK 109 (164)
Q Consensus 40 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~ 109 (164)
.+.+.|++|+..++++++++|+ ...++..+|.++...+++ ++|+..|+++++++|+...+++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~L 86 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 3556799999999999999999 789999999999998875 599999999999999999999999
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHHHhhCCCcc
Q 031170 110 GMIYSLLD-----------RNAEAKEEFAKYRQLSPKKF 137 (164)
Q Consensus 110 ~~~~~~~~-----------~~~~A~~~l~~~~~~~p~~~ 137 (164)
|.+|...| ++++|+.+|++++.++|++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999875 89999999999999999983
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.60 E-value=9.2e-16 Score=113.89 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhh
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYF 107 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 107 (164)
.+.++..+|.++..+|++++|+..|+++++.+|. ...++..+|.++..+|++++|+.++++++..+|++..+++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 78 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3455677888999999999999999999999998 7889999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170 108 CKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 108 ~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~~ 144 (164)
.+|.++..+|++++|+..++++++..|.+......+.
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999854443333
No 166
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.60 E-value=2.1e-14 Score=95.74 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=111.1
Q ss_pred chhhhhcC----CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 2 ARLLSEMG----KTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 2 a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
|.+|.. + ++++|+.+|+++.. ++++.+++.+|.++.. .+++++|+.+|+++++..+... .+.++.
T Consensus 57 g~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~----~~~a~~ 129 (212)
T 3rjv_A 57 AQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA----AVDAQM 129 (212)
T ss_dssp HHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH----HHHHHH
T ss_pred HHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc----hHHHHH
Confidence 456666 6 89999999999965 6899999999999998 8999999999999999887310 478999
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhc-C-----CHHHHHHHHHHHHhhCCCc
Q 031170 74 IMAQIKFL----QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLL-D-----RNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 74 ~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~-----~~~~A~~~l~~~~~~~p~~ 136 (164)
.+|.+|.. .+++++|+.+|++++.. |.++.+++.+|.+|... | ++++|+.+|+++.......
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999 89999999999999998 78888999999999873 4 8999999999999886544
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=3.1e-14 Score=107.69 Aligned_cols=135 Identities=13% Similarity=0.050 Sum_probs=122.2
Q ss_pred hcCCc-hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 7 EMGKT-QDARNVFEEILAGNPLSFEALFENALLMDRCGE----------GEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 7 ~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
..|++ ++|++.+++++..+|++..+|...+.++...|+ +++++..+.++++.+|+ +..+|...
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------~y~aW~hR 113 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHR 113 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHH
Confidence 34554 578999999999999999999999999999998 99999999999999999 89999999
Q ss_pred HHHHHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170 76 AQIKFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSPKKFEVEGYLRTPL 147 (164)
Q Consensus 76 a~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p~~~~~~~~~~~~~ 147 (164)
+.+....+ +|++++.++.++++.+|++..+|..++.++...| .++++++++.+++..+|.++....+...++
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll 188 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHH
Confidence 99999999 7899999999999999999999999999999999 899999999999999999954444443333
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.59 E-value=1.9e-15 Score=107.67 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh-----------hhhhhHHHHHHHHHHHccCHHHHHHHHH
Q 031170 25 NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL-----------KEARDVRFIMAQIKFLQKNVDEALKSYQ 93 (164)
Q Consensus 25 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 93 (164)
.+.....+..+|.+++..|+|++|+..|++++...|..... .....++..+|.++..+|+|++|+.+++
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34456789999999999999999999999999998872100 0001378899999999999999999999
Q ss_pred HHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhh
Q 031170 94 ELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEG 141 (164)
Q Consensus 94 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~ 141 (164)
+++..+|++..+++.+|.++..+|++++|+..|++++.+.|.+.....
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~ 302 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999844333
No 169
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=5.2e-14 Score=105.45 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=111.0
Q ss_pred cCCch-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhh-hhHHHHHHHH
Q 031170 8 MGKTQ-------DARNVFEEILA-GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEA-RDVRFIMAQI 78 (164)
Q Consensus 8 ~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~la~~ 78 (164)
.|+++ +|+.+|+++++ ..|+++.+|..+|.++...|++++|...|+++++..|. . ..+|..+|.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~ 365 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKF 365 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS------CHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc------CchHHHHHHHHH
Confidence 68887 99999999997 79999999999999999999999999999999999887 3 3588899999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHH-HHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 79 KFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMI-YSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+...|++++|+..|++++...|.....+...+.+ +...|+.++|+..|+++++..|++
T Consensus 366 ~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence 9999999999999999999988877776666655 335899999999999999999988
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.58 E-value=7.4e-14 Score=99.19 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=72.8
Q ss_pred hhhcC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 5 LSEMG-KTQDARNVFEEILAGNPLSFEALFENALLMDRC-G-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 5 ~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
+...| .+++++..+++++..+|.+..+|...+.++... + ++++++.++.++++.+|. +..+|...+.+...
T Consensus 98 L~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW~~R~wvl~~ 171 (349)
T 3q7a_A 98 LTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTWAYLHWLYSH 171 (349)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 33444 355555555555555555555555555555554 4 555555555555555555 45555555555555
Q ss_pred ccCHH--------HHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-------HHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVD--------EALKSYQELEIEDPNDFRPYFCKGMIYSLLDR-------NAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~--------~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~A~~~l~~~~~~~p~~ 136 (164)
.|.++ ++++++.+++..+|.+..+|..++.++...+. ++++++++.+++..+|.+
T Consensus 172 l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 172 FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence 55554 56666666666666666666666666655554 456666666666666666
No 171
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.7e-16 Score=91.44 Aligned_cols=94 Identities=9% Similarity=-0.066 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND----- 102 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----- 102 (164)
++.++..+|.++...|++++|+..|+++++.+|. ...++..+|.++...|++++|+.++++++..+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 4567888888888888888888888888888887 67788888888888888888888888888888887
Q ss_pred -chhhhhHHHHHHhcCCHHHHHHHHH
Q 031170 103 -FRPYFCKGMIYSLLDRNAEAKEEFA 127 (164)
Q Consensus 103 -~~~~~~~~~~~~~~~~~~~A~~~l~ 127 (164)
..+++.+|.++...|++++|+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 6677777887777776666655443
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.57 E-value=2.2e-13 Score=96.30 Aligned_cols=136 Identities=13% Similarity=0.043 Sum_probs=121.4
Q ss_pred hhcCCch-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 6 SEMGKTQ-DARNVFEEILAGNPLSFEALFENALLMDRCGE----------GEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 6 ~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
...|+++ +|+..+.+++..+|++..+|...+.++...+. +++++.++..++..+|. +..+|..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence 3566776 89999999999999999999999999887776 68999999999999999 8999999
Q ss_pred HHHHHHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC-HHHHHHHHHHHHhhCCCcchhhhHhhhhh
Q 031170 75 MAQIKFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR-NAEAKEEFAKYRQLSPKKFEVEGYLRTPL 147 (164)
Q Consensus 75 la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~l~~~~~~~p~~~~~~~~~~~~~ 147 (164)
.+.+....+ ++++++.++.+++..+|.+..+|..++.++...|. ++++++++.+++..+|.++....+...++
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 999999999 49999999999999999999999999999999998 59999999999999999955444444333
No 173
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=5e-14 Score=100.83 Aligned_cols=134 Identities=13% Similarity=-0.002 Sum_probs=95.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-----ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
|.++...|++++|+..+++++...|.... ++..+|.++...|++++|+..+++++...+..+.......++..+|
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45667778888888888888887765422 4667788888888888888888888887765443322334456778
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCC--------CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDP--------NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.++...|++++|+.++++++...+ .....+..+|.++...|++++|..++.+++...|.
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 888888888888888888776542 12234556777777788888888888888777665
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.56 E-value=1.1e-13 Score=98.29 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=122.6
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-c-
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG-EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-K- 83 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-~- 83 (164)
..+..++|++.+++++..+|++..+|...+.++...| .+++++..+.+++..+|+ +..+|...+.+.... +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHCCS
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCC
Confidence 4455679999999999999999999999999999999 599999999999999999 899999999999988 7
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHH--------HHHHHHHHHHhhCCCcchhhhHhhhhhhh
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNA--------EAKEEFAKYRQLSPKKFEVEGYLRTPLSR 149 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--------~A~~~l~~~~~~~p~~~~~~~~~~~~~~~ 149 (164)
++++++.++.+++..+|++..+|..++.++...|.++ ++++.+.+++..+|.++....+...++..
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988887 99999999999999995544444444333
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.56 E-value=1.3e-13 Score=97.42 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=116.8
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC-HHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRCGE--GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN-VDE 87 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~ 87 (164)
+++++..++.++..+|.+..+|...+.++...++ +++++.++.++++.+|. +..+|...+.+....|. +++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHH
Confidence 7899999999999999999999999999999995 89999999999999999 78999999999999998 699
Q ss_pred HHHHHHHHHHhCCCCchhhhhHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCcchhhhHhh
Q 031170 88 ALKSYQELEIEDPNDFRPYFCKGMIYSLL--------------DRNAEAKEEFAKYRQLSPKKFEVEGYLR 144 (164)
Q Consensus 88 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~l~~~~~~~p~~~~~~~~~~ 144 (164)
++.++.+++..+|.+..+|..++.++... +.++++++++.+++..+|++.....|..
T Consensus 164 el~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r 234 (331)
T 3dss_A 164 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR 234 (331)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999998886 4588999999999999999944433333
No 176
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.56 E-value=5.5e-14 Score=80.79 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170 27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY 106 (164)
Q Consensus 27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 106 (164)
.++.+++.+|.++...|++++|+..++++++..|. ...++..+|.++...|++++|+.++++++..+|.+..++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 80 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence 45778899999999999999999999999999887 678888999999999999999999999999999999999
Q ss_pred hhHHHHHHhcC
Q 031170 107 FCKGMIYSLLD 117 (164)
Q Consensus 107 ~~~~~~~~~~~ 117 (164)
..+|.++...|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99988887654
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.8e-16 Score=91.61 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=81.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+.........++..+|.++.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999984222222677888999999
Q ss_pred HccCHHHHHHHHHH
Q 031170 81 LQKNVDEALKSYQE 94 (164)
Q Consensus 81 ~~~~~~~A~~~~~~ 94 (164)
..|+++.|+..+++
T Consensus 90 ~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 90 AVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHCCCCCSSSSSS
T ss_pred HHHhHhhhHhHHHH
Confidence 99988887766654
No 178
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=2.1e-13 Score=97.57 Aligned_cols=133 Identities=11% Similarity=-0.030 Sum_probs=109.5
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh--hhhhhHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL--KEARDVRF 73 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~ 73 (164)
|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...+..... .....++.
T Consensus 60 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 139 (373)
T 1hz4_A 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 5677889999999999999998765432 336789999999999999999999999987542221 11345667
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCc-----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIEDPNDF-----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
.+|.++...|++++|..++++++...+... ..+..+|.++...|++++|...+.+++...+
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999877532 3567889999999999999999999987743
No 179
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.50 E-value=5.7e-13 Score=93.13 Aligned_cols=132 Identities=13% Similarity=-0.004 Sum_probs=103.8
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNP--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQI 78 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 78 (164)
+|.++...|++++|++++.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+.+|+...........+.-|++
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHH
Confidence 36788899999999999999999987 8899999999999999999999999999999888100000023333344555
Q ss_pred HHHcc--CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 79 KFLQK--NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 79 ~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.+..| ++.+|..+|+++....|........+. ++..+|++++|...++.+++..
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence 77667 999999999999888776222222233 8999999999999999888774
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.49 E-value=1.2e-13 Score=83.11 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHH
Q 031170 46 EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEE 125 (164)
Q Consensus 46 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~ 125 (164)
++|+..|+++++.+|. ...++..+|.++...|++++|+.+|++++..+|.+..+++.+|.++...|++++|+..
T Consensus 2 ~~a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4688999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 031170 126 FAKYRQLSPKK 136 (164)
Q Consensus 126 l~~~~~~~p~~ 136 (164)
|++++...|..
T Consensus 76 ~~~al~~~~~~ 86 (115)
T 2kat_A 76 WESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcccc
Confidence 99999998865
No 181
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.49 E-value=1.4e-13 Score=81.02 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=60.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 24 GNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 24 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+ ...++..+|.++...|++++|+.+|++++...|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 46888888888999988999999999999999988888 67788888999999999999999888888875543
No 182
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.48 E-value=5.5e-14 Score=82.33 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhh-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARD-VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY 106 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 106 (164)
..|.++...|++++|+..++++++.+|. ... ++..+|.++...|++++|+.+|++++..+|++..++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444555555555555555555555554 344 445555555555555555555555555555554443
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.47 E-value=4.3e-13 Score=76.94 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=71.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..++++++.+|. ...++..+|.++.
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~ 88 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHH
Confidence 3678889999999999999999999999999999999999999999999999999999998 6888889999887
Q ss_pred Hcc
Q 031170 81 LQK 83 (164)
Q Consensus 81 ~~~ 83 (164)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.46 E-value=1.7e-13 Score=80.17 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=73.7
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|+ ...++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~------ 74 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD------SPALQAR------ 74 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------STHHHHH------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHH------
Confidence 56788899999999999999999999999 9999999999999999999999999999988 4544432
Q ss_pred HccCHHHHHHHHHHHHHhCCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
+.+.+++.+|++++..+|.+.
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCCS
T ss_pred --HHHHHHHHHHHHHhccCcccc
Confidence 667888888888877777654
No 185
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.42 E-value=5.9e-12 Score=93.49 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=81.5
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL---- 81 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~---- 81 (164)
+++++|+.+|+++++. +++.+++.+|.++...| ++++|+.+|+++++.. ++.++..+|.+|..
T Consensus 310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--------EKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCC
Confidence 5666666666666553 34556666666666544 5566666666666552 36677788888888
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p~ 135 (164)
.+++++|+.+|++++.. .++.+++.+|.+|.. .+++++|+.+|++++...|+
T Consensus 380 ~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 78888888888888775 357778888888887 78888888888888888744
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=5.8e-12 Score=78.47 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=100.7
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH----cc
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL----QK 83 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~~ 83 (164)
.+++++|+.+|+++.+.. ++.+. +|.+|...+..++|+.+|+++.+.. ++.++..+|.+|.. .+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACELN--------SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSSSCC
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHcCCCCCc
Confidence 457899999999999876 44444 9999999999999999999999973 47899999999999 89
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~p 134 (164)
++++|+.+|+++.+. .++.+.+.+|.+|.. .++.++|+.+|+++.....
T Consensus 76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999999986 778999999999999 8999999999999988753
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.41 E-value=3e-12 Score=80.42 Aligned_cols=106 Identities=14% Similarity=0.053 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND------ 102 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------ 102 (164)
..++..+|.++...|++++|+.+++++++..+..........++..+|.++...|++++|+.++++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45788999999999999999999999999987644333334678899999999999999999999999875443
Q ss_pred chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
..++..+|.++...|++++|+..+++++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999987743
No 188
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.40 E-value=1.4e-11 Score=91.45 Aligned_cols=113 Identities=11% Similarity=-0.032 Sum_probs=65.1
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH--
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-- 81 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-- 81 (164)
.+++++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.++..+|.+|..
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--------LPQAQQNLGVMYHEGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCC
Confidence 56666666666666554 456666666666666 666666666666665542 24455555555555
Q ss_pred --ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhh
Q 031170 82 --QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 82 --~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~ 132 (164)
.+++++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|+++...
T Consensus 126 g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 55556666665555543 345555555555554 45555555555555543
No 189
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.39 E-value=5.5e-12 Score=93.04 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=61.2
Q ss_pred chhhhhcC---CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 2 ARLLSEMG---KTQDARNVFEEILAGNPLSFEALFENALLMDRC----GEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 2 a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
|.+|...| ++++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |. ++.+++.
T Consensus 183 g~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g------~~~a~~~ 253 (452)
T 3e4b_A 183 ATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG------YPASWVS 253 (452)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG------STHHHHH
T ss_pred HHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC------CHHHHHH
Confidence 33444455 555566666655555555555555555555433 45555555555554 33 3455555
Q ss_pred HHHH-H--HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcC-----CHHHHHHHHHHHH
Q 031170 75 MAQI-K--FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLD-----RNAEAKEEFAKYR 130 (164)
Q Consensus 75 la~~-~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~A~~~l~~~~ 130 (164)
+|.+ + ...+++++|+.+|+++... .++.+++.+|.+|. .| ++++|+.+|+++.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 5555 2 3445555555555555532 34555555555554 33 5555555555554
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.37 E-value=2.5e-12 Score=75.63 Aligned_cols=69 Identities=26% Similarity=0.442 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
+..+++.+|.++...|++++|+.+|++++..+|++..+++.+|.++...|++++|+..+++++.+.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 678999999999999999999999999999999999999999999999999999999999999987765
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.37 E-value=2.8e-12 Score=95.35 Aligned_cols=130 Identities=7% Similarity=-0.081 Sum_probs=103.5
Q ss_pred hhhhcCCchHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAG-----NPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRF 73 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~ 73 (164)
.+...|+|++|+..+++++.. .|+++ ..+.++|.+|..+|+|++|+.++++++.+....- ...+ ....+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999999985 34454 4688999999999999999999999998752211 0111 355667
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---hhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---RPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.+|.+|..+|++++|+..|++++.+ .|+++ ...-.++.++..++.+++|...|.++....
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999875 45554 345678888889999999999999987654
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=9e-12 Score=87.11 Aligned_cols=126 Identities=8% Similarity=-0.018 Sum_probs=104.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL------SFEALFENALLMDRCG--EGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
++++..+|+.+.|.+.++++.+.+|+ .......-+++.+.+| ++.+|...|+++.+..|+ ......
T Consensus 143 vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~------~~~~~l 216 (310)
T 3mv2_B 143 IEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT------WKTQLG 216 (310)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS------HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC------cccHHH
Confidence 57889999999999999999999983 3334444466677777 999999999999888875 223333
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh----------CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIE----------DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.++ ++..+|++++|...++.+++. +|+++..+.+++.+....|+ +|.+++.++....|++
T Consensus 217 Lln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 217 LLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 334 899999999999999987776 48899999888888888897 8999999999999999
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=7.6e-12 Score=91.00 Aligned_cols=131 Identities=10% Similarity=0.072 Sum_probs=89.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSF-----------------EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 64 (164)
|+.+...|+|++|++.|.++++..|... .++..+|.+|...|++++|+.++.++++..+....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999999888653 35788999999999999999999999988765433
Q ss_pred hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
......+...++.++...|++++|+.++++++...+. ....+..+|.++...|++++|...+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 2222233444555555666666666666665543221 1234455666666666666666666665544
No 194
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=1.9e-11 Score=90.11 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=93.1
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc--
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALL-M--DRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-- 83 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-- 83 (164)
+++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+++++.+ +..+++.+|.+|. .|
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--------QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH-HCSS
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHH-cCCC
Confidence 78999999999987 8899999999988 4 57889999999999998754 3678888998888 55
Q ss_pred ---CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh----cCCHHHHHHHHHHHHhhC
Q 031170 84 ---NVDEALKSYQELEIEDPNDFRPYFCKGMIYSL----LDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 84 ---~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~l~~~~~~~ 133 (164)
++++|+.+|+++. |.++.+++.+|.+|.. ..++++|+.+|+++....
T Consensus 299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 9999999999988 8888899999988877 448899999999987754
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.32 E-value=5.9e-11 Score=68.86 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 25 NPLSFEALFENALLMDRCGE---GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 25 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
+|++++++..+|.++...++ .++|...++++++.+|+ +..+...+|..++..|+|++|+.++++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68899999999998876665 68999999999999998 8899999999999999999999999999999888
Q ss_pred Cc
Q 031170 102 DF 103 (164)
Q Consensus 102 ~~ 103 (164)
++
T Consensus 76 ~~ 77 (93)
T 3bee_A 76 NL 77 (93)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.31 E-value=3.6e-12 Score=92.72 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=111.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFE------ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFI 74 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 74 (164)
||.+|...|++++|++++.+++...+.... +...++.++...|++++|+.++++++...+..........++..
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 467899999999999999999987655422 35567888888999999999999999987655443334677889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC------CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPN------DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
+|.++...|+|++|+.++++++..... ....+...+.++...|++++|...+++++...+.
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998875322 2457888999999999999999999999887544
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.29 E-value=7.2e-11 Score=84.12 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=95.5
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CcHHHHHHHHHHH------hhccccchhhhhhhHHHHHHHHH
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCG----EGEAVIKRLEEAL------EIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~------~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
+..+|+.+|+++++.+|+++.++-.++.++.... ........+..++ ..+|. .+.++..++..+
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~------~a~~~~alal~~ 287 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN------LSIIYQIKAVSA 287 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc------CHHHHHHHHHHH
Confidence 4589999999999999999999998888775321 1112222222222 23344 577777888889
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 80 FLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 80 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
...|++++|+..+++++..+|+ ...+..+|.++...|++++|++.+.+++.++|..
T Consensus 288 l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 288 LVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999864 5677899999999999999999999999999987
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.27 E-value=3.2e-12 Score=88.30 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=83.0
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHH-------HHH-----------------------------------------
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFEN-------ALL----------------------------------------- 38 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~----------------------------------------- 38 (164)
..++++.|.+.|.+++..+|+.+++|.++ +.+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 47899999999999999999999999977 444
Q ss_pred --------------HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 031170 39 --------------MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND-- 102 (164)
Q Consensus 39 --------------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-- 102 (164)
+...|+|++|...|..++...|. .. +.+.+|.+++..++|++|+.+|+.+....++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 44455555555555555554444 33 56666667777777777777776554432111
Q ss_pred chhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 103 FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
..+++.+|.++..+|++++|+..|.+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 2367778888888888888888888887443
No 199
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.23 E-value=3.1e-10 Score=71.10 Aligned_cols=98 Identities=22% Similarity=0.205 Sum_probs=82.5
Q ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhhc-cccchhhhhhhHHHHHHHHHHHccC
Q 031170 9 GKTQDARNVFEEILAGNPLSFEALFENALLMDRCG---EGEAVIKRLEEALEIA-EDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
.....+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++.+|+.+++.+ |.. ..++++.+|..+++.|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-----~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-----QRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-----HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-----hHHHHHHHHHHHHHccC
Confidence 34567788888888888899999999999999988 6669999999999988 621 47888999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
|++|.++++.+++..|++..+....-.
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999999988775544433
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=4.9e-10 Score=69.64 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=79.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDR----CGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMA 76 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 76 (164)
||.+|...+.+++|+.+|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+...+|
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--------~~~a~~~Lg 100 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--------DQDGCLILG 100 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--------CHHHHHHHH
Confidence 356777888899999999999886 789999999999999 899999999999999873 478899999
Q ss_pred HHHHH----ccCHHHHHHHHHHHHHh
Q 031170 77 QIKFL----QKNVDEALKSYQELEIE 98 (164)
Q Consensus 77 ~~~~~----~~~~~~A~~~~~~~~~~ 98 (164)
.+|.. .+++++|+.+|+++.+.
T Consensus 101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 101 YKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999 99999999999999986
No 201
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.15 E-value=1.1e-10 Score=85.08 Aligned_cols=113 Identities=10% Similarity=-0.057 Sum_probs=78.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
+|..+...|.|++|+.+|.++ ..|..+|.++.++|++++|++.++++ . ++..|...+.+..
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~------~~~~Wk~v~~aCv 188 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----N------STRTWKEVCFACV 188 (449)
T ss_dssp ---------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----T------CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----C------CchhHHHHHHHHH
Confidence 356677778888888888766 35777788888888888888888877 1 2566777777777
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
..|+|+.|..+..+++ .+|+. ...++.+|...|++++|+.++++++.+++..
T Consensus 189 ~~~ef~lA~~~~l~L~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 189 DGKEFRLAQMCGLHIV-VHADE---LEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HTTCHHHHHHTTTTTT-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HcCcHHHHHHHHHHHH-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 7888888877666522 44443 3356778888999999999999999999877
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.13 E-value=6.4e-10 Score=64.44 Aligned_cols=69 Identities=10% Similarity=-0.065 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 68 ARDVRFIMAQIKFLQKN---VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++.++..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|++++|+.++++++...|.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57889999999987766 7999999999999999999999999999999999999999999999999984
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.12 E-value=1.6e-09 Score=63.99 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY 106 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 106 (164)
++.-++.+|..++..++|..|+..|++|++..+.... ......++..+|.+++.+|++++|+.++++++...|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4566889999999999999999999999997543211 111467888999999999999999999999999999998877
Q ss_pred hhHH
Q 031170 107 FCKG 110 (164)
Q Consensus 107 ~~~~ 110 (164)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6666
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.12 E-value=1.3e-09 Score=88.67 Aligned_cols=119 Identities=16% Similarity=0.114 Sum_probs=98.0
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-------------chh--
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-------------NKL-- 65 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~~-- 65 (164)
+|+++...|++++|++.|.++ +++..+..+|.++.+.|+|++|+.+|..+.+..+.. +..
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 1185 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH
Confidence 477889999999999999775 888999999999999999999999999988776442 000
Q ss_pred ------hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 66 ------KEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 66 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
..+...+..+|..++..|+|++|+.+|.++ ..|..++.++.++|++++|++.+.++...
T Consensus 1186 le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1186 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 002334557899999999999999999885 47788999999999999999999998443
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.04 E-value=2.1e-09 Score=67.32 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCchhhhhHHHHHHhcCCHH
Q 031170 46 EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK---NVDEALKSYQELEIED-P-NDFRPYFCKGMIYSLLDRNA 120 (164)
Q Consensus 46 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~~~~~~~~~~~~~ 120 (164)
..+...|.+.+..++. ...+.+.+|.++...+ +.++++..++.+++.+ | ++.+.+|.+|..+.++|+++
T Consensus 15 ~~~~~~y~~e~~~~~~------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHTTCC------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHccCCC------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 4556667777776665 6889999999999988 7789999999999998 7 56889999999999999999
Q ss_pred HHHHHHHHHHhhCCCcchhhhH
Q 031170 121 EAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 121 ~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
+|+.++++++++.|++.+....
T Consensus 89 ~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999554443
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.03 E-value=1.1e-09 Score=80.39 Aligned_cols=92 Identities=5% Similarity=-0.033 Sum_probs=69.1
Q ss_pred hcCCchHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAG-----NPLSFE---ALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRFIMA 76 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~~la 76 (164)
..|+|++|+..+++++.+ .|+++. .+.++|.+|..+|+|++|+.++++++.+....- ...+ ....+..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999998874 455544 577889999999999999999999988742110 0000 245566889
Q ss_pred HHHHHccCHHHHHHHHHHHHHh
Q 031170 77 QIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
.+|..+|++++|+..|++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.01 E-value=2.3e-09 Score=73.82 Aligned_cols=86 Identities=13% Similarity=0.005 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH-c
Q 031170 11 TQDARNVFEEILAGNPL--SFEALFENALLMDRC-----GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL-Q 82 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~ 82 (164)
...|...++++++++|+ +..+|..+|.+|... |+.++|..+|+++++++|+. +...++..|..+.. +
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhc
Confidence 34556666666666666 444666666666553 56666666666666666641 15555555665555 3
Q ss_pred cCHHHHHHHHHHHHHhCCC
Q 031170 83 KNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 83 ~~~~~A~~~~~~~~~~~p~ 101 (164)
|++++|..++++++...|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 6666666666666665544
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.00 E-value=2e-08 Score=69.21 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=90.4
Q ss_pred cCCCCHHHHHHHHHHHHH-----cCC------cHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc-----cCHHH
Q 031170 24 GNPLSFEALFENALLMDR-----CGE------GEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ-----KNVDE 87 (164)
Q Consensus 24 ~~p~~~~~~~~la~~~~~-----~~~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~ 87 (164)
.+|+++++++..|.+... .|. ...|...++++++++|+-. ...++..+|.+|... |+.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~----~GsA~~~LG~lY~~vPp~~gGd~ek 222 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ----EGAVWNVLTKFYAAAPESFGGGMEK 222 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH----HHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc----cCHHHHHHHHHHHhCCCccCCCHHH
Confidence 457778877766654422 233 3578999999999999832 366899999999995 99999
Q ss_pred HHHHHHHHHHhCCCC-chhhhhHHHHHHh-cCCHHHHHHHHHHHHhhCCCc
Q 031170 88 ALKSYQELEIEDPND-FRPYFCKGMIYSL-LDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 88 A~~~~~~~~~~~p~~-~~~~~~~~~~~~~-~~~~~~A~~~l~~~~~~~p~~ 136 (164)
|..+|++++.++|+. ..+++..|..+.. .|+.+++.+++++++...|..
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999975 9999999999888 599999999999999998874
No 209
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.98 E-value=5.2e-10 Score=81.66 Aligned_cols=119 Identities=13% Similarity=-0.020 Sum_probs=97.1
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
||.++...|+|++|++.++++ +++.+|...+.++...|+++.|..+..+ +...|+ -...+..+|.
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---------~l~~lv~~Ye 218 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---------ELEELINYYQ 218 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---------HHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---------hHHHHHHHHH
Confidence 478899999999999999999 5789999999999999999999777665 335554 2335788999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh--cCCHHHHHHHHHHHHhhCC
Q 031170 81 LQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL--LDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~A~~~l~~~~~~~p 134 (164)
+.|.+++|+.++++++..++.+..++..+|.++.+ .++..+.++.|...+.+.|
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 99999999999999999999988888888888877 4555666666665555555
No 210
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.97 E-value=2.1e-08 Score=77.38 Aligned_cols=134 Identities=7% Similarity=-0.092 Sum_probs=97.6
Q ss_pred hhhhhcCCchHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch----------------h
Q 031170 3 RLLSEMGKTQDAR-NVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK----------------L 65 (164)
Q Consensus 3 ~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------~ 65 (164)
+.+...|+.++|. .+|++++...|.+...|...+.+....|+++.|...|++++...+.... .
T Consensus 351 ~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 351 NYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 4456678888997 9999999999999999999999999999999999999999986321000 0
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCCCc
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEIE-DPNDFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p~~ 136 (164)
.....+|...+......|+.+.|...|.++++. .+.....+...+.+....+ +.+.|..+|..+++..|.+
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 012446777777777778888888888888776 3334455555555555544 4778888888888877776
No 211
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.97 E-value=1.6e-08 Score=78.02 Aligned_cols=128 Identities=11% Similarity=-0.053 Sum_probs=104.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhc-----------CCC-----------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-
Q 031170 2 ARLLSEMGKTQDARNVFEEILAG-----------NPL-----------SFEALFENALLMDRCGEGEAVIKRLEEALEI- 58 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~-----------~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~- 58 (164)
+......|++++|..+|++++.. .|. ...+|...+.+....|..+.|...|.+|++.
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34556789999999999999875 253 3457888888888899999999999999987
Q ss_pred ccccchhhhhhhHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 59 AEDGNKLKEARDVRFIMAQIKFLQK-NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 59 ~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.+. ...++...|.+....+ +++.|.+.|+.+++..|+++..|...+......|+.+.|..+|++++...|.
T Consensus 465 ~~~------~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 465 KLV------TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp GGS------CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CCC------ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 333 3556667777776664 5899999999999999999988888888888889999999999999998874
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.95 E-value=6.3e-09 Score=77.44 Aligned_cols=98 Identities=13% Similarity=-0.014 Sum_probs=78.4
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccch-hhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---h
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNK-LKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---R 104 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~ 104 (164)
.+..+..+|+|++|+..+++++++....-. ..+ ....+..+|.+|..+|+|++|+.++++++.. .|+++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344567899999999999999997533211 111 3556678999999999999999999999875 34443 4
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 105 PYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
.+.++|.+|..+|++++|+.++++++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999876
No 213
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.95 E-value=7.3e-09 Score=84.40 Aligned_cols=112 Identities=10% Similarity=-0.089 Sum_probs=69.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFL 81 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (164)
|..+...|+|++|+.+|.++ ..|..+|.++.+.|++++|++.++++. +..+|...+.....
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~-----------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-----------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----------CHHHHHHHHHHHhh
Confidence 45566666666666666664 356666666666666666666666661 23455555555555
Q ss_pred ccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 82 QKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|++..|..+... +..+|+ .+..++..|...|.+++|+.++++++.++|.+
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv~~d---eLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred hhHHHHHHHHHHh-hhcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 5555555555543 222233 33366777777888888888888888888766
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.92 E-value=6.3e-09 Score=76.29 Aligned_cols=94 Identities=11% Similarity=-0.072 Sum_probs=71.6
Q ss_pred hhhcCCchHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHHH
Q 031170 5 LSEMGKTQDARNVFEEILAG-----NPLSF---EALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRFI 74 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~~ 74 (164)
+...|+|++|+..+++++.. .|+++ ..+..+|.+|..+|+|++|+.++++++.+....- ...+ ....+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 45678999999999999875 34454 4577888999999999999999999998742110 0000 2455668
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
+|.+|..+|++++|+..|++++.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998875
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.90 E-value=8.2e-09 Score=60.93 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=60.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGN-------PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
||..++..|+|+.|+.+|+.+++.. +..+.++..+|.++.++|++++|+.+++++++..|+ +..+..
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~ 84 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE------HQRANG 84 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHh
Confidence 4788999999999999999999863 346788999999999999999999999999999998 455544
Q ss_pred HHH
Q 031170 74 IMA 76 (164)
Q Consensus 74 ~la 76 (164)
.++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.90 E-value=6.2e-09 Score=76.37 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=74.6
Q ss_pred HHcCCcHHHHHHHHHHHhhccccc-hhhh-hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---hhhhhH
Q 031170 40 DRCGEGEAVIKRLEEALEIAEDGN-KLKE-ARDVRFIMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---RPYFCK 109 (164)
Q Consensus 40 ~~~~~~~~A~~~~~~a~~~~~~~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~~ 109 (164)
...|+|++|+..+++++.+....- ...+ ....+..+|.+|..+|+|++|+.++++++.. .|+++ ..+.++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 346789999999999999753211 1111 2456668999999999999999999999875 34444 457899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 110 GMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 110 ~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
|.+|..+|++++|+.++++++.+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999998873
No 217
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.83 E-value=1e-07 Score=57.72 Aligned_cols=97 Identities=23% Similarity=0.215 Sum_probs=77.3
Q ss_pred CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHH---HHHHHHHHHhhc-cccchhhhhhhHHHHHHHHHHHccCH
Q 031170 10 KTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEA---VIKRLEEALEIA-EDGNKLKEARDVRFIMAQIKFLQKNV 85 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~ 85 (164)
....+.+.|.+.+...+.+.++.+.+|+++........ ++.+++..++.. |.. ....++.+|..+++.|+|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~-----~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-----QRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHhhhH
Confidence 34566777887877778888999999999998887776 888888888876 421 467888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhHHH
Q 031170 86 DEALKSYQELEIEDPNDFRPYFCKGM 111 (164)
Q Consensus 86 ~~A~~~~~~~~~~~p~~~~~~~~~~~ 111 (164)
++|..+++.+++..|.+..+.-....
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999988776544433
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.81 E-value=4.8e-08 Score=71.65 Aligned_cols=96 Identities=8% Similarity=-0.115 Sum_probs=76.2
Q ss_pred HHHHHcCCcHHHHHHHHHHHhhccccc-hhh-hhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCc---hhh
Q 031170 37 LLMDRCGEGEAVIKRLEEALEIAEDGN-KLK-EARDVRFIMAQIKFLQKNVDEALKSYQELEIE-----DPNDF---RPY 106 (164)
Q Consensus 37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~ 106 (164)
.-+..+|+|++|+..+++++.+....- ... .....+..+|.+|..+|+|++|+.++++++.. .|+++ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 345678999999999999998743211 111 02456668999999999999999999999875 24443 457
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 107 FCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 107 ~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
+.+|.+|..+|++++|+.++++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999877
No 219
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.69 E-value=1.5e-06 Score=53.92 Aligned_cols=113 Identities=11% Similarity=-0.015 Sum_probs=92.0
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCc------HHHHHHHHHHHhhccccchhh--hhhhHHHHHHHHHHHccCHHHHHHHHHH
Q 031170 23 AGNPLSFEALFENALLMDRCGEG------EAVIKRLEEALEIAEDGNKLK--EARDVRFIMAQIKFLQKNVDEALKSYQE 94 (164)
Q Consensus 23 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~ 94 (164)
-..|++++.|........+.|+. +.-++.|++++..-|...... .....|...|.. ...+|.++|...|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35799999999999999989999 889999999999887754221 123444555644 566999999999999
Q ss_pred HHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 95 LEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 95 ~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
++.........|...|..-..+|+...|...+.+++.+.|..
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 998877777788888888888999999999999999999987
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.63 E-value=4e-07 Score=65.05 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=69.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 22 LAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 22 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
+...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|+..|++++.++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3567999999999999999999999999999999999975 667789999999999999999999999999998
Q ss_pred Cch
Q 031170 102 DFR 104 (164)
Q Consensus 102 ~~~ 104 (164)
...
T Consensus 343 ~~t 345 (372)
T 3ly7_A 343 ANT 345 (372)
T ss_dssp HHH
T ss_pred cCh
Confidence 753
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.53 E-value=3.5e-07 Score=57.79 Aligned_cols=56 Identities=16% Similarity=0.040 Sum_probs=39.3
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFE---------ALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
.+...|.|+.|+-....++....++++ ++..+|..++.+++|..|...|+++++..
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 355667788888887776665433322 56677888888888888888888877654
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.47 E-value=1.6e-06 Score=52.49 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=74.3
Q ss_pred CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCchhhhhHHHHHHhcCC
Q 031170 44 EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE---ALKSYQELEIED-P-NDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 44 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~~~~~~~~~~~ 118 (164)
....+...|.+.+..++. ...+.+.+|+++....+... ++..++.++..+ | ...+.++.+|..+.++|+
T Consensus 16 ~l~~~~~~y~~e~~~~~~------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCCC------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 344556667777666554 57888999999988776655 999999999886 5 466789999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcchhhh
Q 031170 119 NAEAKEEFAKYRQLSPKKFEVEG 141 (164)
Q Consensus 119 ~~~A~~~l~~~~~~~p~~~~~~~ 141 (164)
+++|+.+++.+++..|.+.+...
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999954433
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.40 E-value=1.7e-05 Score=59.22 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhh------------------------
Q 031170 12 QDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKE------------------------ 67 (164)
Q Consensus 12 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------------ 67 (164)
+....+|++++...|..+.+|+..+..+...|+.++|...|++++.. |.......
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999999999999999 87532110
Q ss_pred ----------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcC-CHHHHHHHHHHHHhhCCC
Q 031170 68 ----------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLD-RNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 68 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~-~~~~A~~~l~~~~~~~p~ 135 (164)
...+|...+......++.+.|...|+++ . .|. ....+...+.+....+ +.+.|...|+.+++..|+
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 1123444455555678899999999999 4 343 3344555555555444 699999999999999887
Q ss_pred c
Q 031170 136 K 136 (164)
Q Consensus 136 ~ 136 (164)
.
T Consensus 353 ~ 353 (493)
T 2uy1_A 353 S 353 (493)
T ss_dssp C
T ss_pred C
Confidence 6
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.39 E-value=5.8e-06 Score=61.70 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=81.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHH----------------------------------------HHHc
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALL----------------------------------------MDRC 42 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~----------------------------------------~~~~ 42 (164)
..+...|+.++|..+|++++.. |.+...+...+.. ..+.
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 3456678888889999988888 8875554433322 2235
Q ss_pred CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHH
Q 031170 43 GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK-NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAE 121 (164)
Q Consensus 43 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 121 (164)
+..+.|...|+++ + .|.. ...++...|.+.+..+ +.+.|...|+.+++..|+++..+...+......|+.+.
T Consensus 300 ~~~~~AR~i~~~A-~-~~~~-----~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 300 RGLELFRKLFIEL-G-NEGV-----GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HCHHHHHHHHHHH-T-TSCC-----CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHh-h-CCCC-----ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5677788888888 3 3321 2345555666666666 58889999999888888877766666666666777777
Q ss_pred HHHHHHHH
Q 031170 122 AKEEFAKY 129 (164)
Q Consensus 122 A~~~l~~~ 129 (164)
|...+.++
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 77777776
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.31 E-value=1.3e-05 Score=50.70 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch---hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC-
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK---LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED---PN- 101 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~- 101 (164)
-.+++.-...+...|.|+.|+-....++....++.. +.....+...+|+.++.+++|.+|...|++++... ++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666677888999999999999998887644222 22235577899999999999999999999986531 11
Q ss_pred ---------------------CchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 102 ---------------------DFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 102 ---------------------~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
+.+..+.++.|+...+++++|+..++.+
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1256789999999999999999998765
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.25 E-value=5.6e-05 Score=56.55 Aligned_cols=123 Identities=7% Similarity=-0.033 Sum_probs=97.8
Q ss_pred CCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170 9 GKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 87 (164)
+..++|.++|+++.... +-+...+..+...+.+.|++++|..+|++..+..-.. +...+..+-..+.+.|++++
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-----d~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-----RLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ccceehHHHHHHHHCCCHHH
Confidence 44688999999988764 2366788999999999999999999999988754210 25566677888999999999
Q ss_pred HHHHHHHHHHhCC-CCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh--CCCc
Q 031170 88 ALKSYQELEIEDP-NDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL--SPKK 136 (164)
Q Consensus 88 A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~--~p~~ 136 (164)
|.+.|++.....- -+...+..+...+...|+.++|.++|++.... .|+.
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 9999999887532 24556777888899999999999999998654 4444
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.24 E-value=8.5e-05 Score=45.73 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcH---HHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 26 PLSFEALFENALLMDRCGEGE---AVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 26 p~~~~~~~~la~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
.-.+++.+.+|+++......+ +++.+++..++..|.. ....++.+|..+++.|+|.+|..+.+.+++..|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-----~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 345677777777777776554 5677777777766632 35666777777777777777777777777777777
Q ss_pred chhhhh
Q 031170 103 FRPYFC 108 (164)
Q Consensus 103 ~~~~~~ 108 (164)
..+.-.
T Consensus 111 ~QA~~L 116 (144)
T 1y8m_A 111 KQVGAL 116 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654433
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.22 E-value=3.6e-05 Score=46.78 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCcH---HHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 28 SFEALFENALLMDRCGEGE---AVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
.+++.+.+|+++++....+ +++.+++..++.+|.. ....++.+|..+++.|+|++|..+.+.++...|++..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 5677888888888777553 5788888888777632 3677778888888888888888888888888888876
Q ss_pred hhhhHHH
Q 031170 105 PYFCKGM 111 (164)
Q Consensus 105 ~~~~~~~ 111 (164)
+.-....
T Consensus 114 A~~Lk~~ 120 (134)
T 3o48_A 114 VGALKSM 120 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.17 E-value=0.0003 Score=52.62 Aligned_cols=128 Identities=11% Similarity=0.014 Sum_probs=97.6
Q ss_pred hhhhcCCchHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHhhccccchhhhhhhHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGN-PLSFEALFENALLMDRCGE---------GEAVIKRLEEALEIAEDGNKLKEARDVRF 73 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~---------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 73 (164)
.+.+.|+.++|+++|+++.... +-+...|..+..++...+. .+.|..+|++.....-.. +...+.
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-----d~~tyn 109 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-----NEATFT 109 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-----CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-----CHHHHH
Confidence 4568899999999999998753 2255667777666665544 578999999887754210 256677
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh--CCCc
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIED-PNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL--SPKK 136 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~--~p~~ 136 (164)
.+-..+.+.|++++|...|++..... +-+...+..+...+...|+.++|.+.+...... .|+.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 88889999999999999999987753 234566777788889999999999999998765 4444
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=98.16 E-value=5.3e-05 Score=59.07 Aligned_cols=121 Identities=10% Similarity=0.052 Sum_probs=87.2
Q ss_pred cCC-chHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcC-CcHHHHHHHHHHHhhc-------cccchh-----hhhhhH
Q 031170 8 MGK-TQDARNVFEEILAGNPLSFEALFENALLMD--RCG-EGEAVIKRLEEALEIA-------EDGNKL-----KEARDV 71 (164)
Q Consensus 8 ~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~~~-~~~~A~~~~~~a~~~~-------~~~~~~-----~~~~~~ 71 (164)
.++ ++.|++.++++...+|.... ++..+.+.. ..+ +--+|+..+.+.++.. +..... ......
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 57899999999999997643 333333322 222 2346788888777531 111000 001234
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 72 RFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
+...+.....+|+++-|+.+.++++...|.....|+.++.+|..+|+++.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456777889999999999999999999999999999999999999999999998877
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.07 E-value=5.9e-05 Score=46.87 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=77.0
Q ss_pred hhhcCCc------hHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhh
Q 031170 5 LSEMGKT------QDARNVFEEILAGNPLS--------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARD 70 (164)
Q Consensus 5 ~~~~~~~------~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 70 (164)
....|+. ++-+++|++++..-|-. ...|...|.. ...++.+.|.+.|+.+++.... .+-
T Consensus 23 lE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk------FAK 95 (161)
T 4h7y_A 23 LEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK------FAF 95 (161)
T ss_dssp HHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT------BHH
T ss_pred HHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH------HHH
Confidence 3455888 88899999999987643 4456666644 6778999999999999998554 588
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
+|...|..-.++|+.++|.+.+.+++...|....
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 8999999999999999999999999999888665
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.95 E-value=0.00023 Score=43.23 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170 68 ARDVRFIMAQIKFLQK---NVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
.....+.+|+++.... +..+++..++.+++.+|. ..+.++.+|..+.++|++++|..+...++...|.+.+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4677788888887665 456899999999998884 46789999999999999999999999999999999554433
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.94 E-value=0.0005 Score=42.33 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCC-CchhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhH
Q 031170 68 ARDVRFIMAQIKFLQK---NVDEALKSYQELEIEDPN-DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGY 142 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~ 142 (164)
.....+.+|+++.... +..+++..++.++...|. ..+.++.+|..+.++|++++|.++.+..++..|.+.+....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4778888888888766 456899999999998884 56778999999999999999999999999999999554433
No 234
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00023 Score=52.23 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=74.6
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPL---SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQ 77 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 77 (164)
+|..|...|++++|.+.|.++.....+ -.+.+.....+++..++|..+...+.++-......+............|.
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl 216 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGI 216 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 467788899999999999988775432 35677788888889999999999999987765443322223345556788
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC
Q 031170 78 IKFLQKNVDEALKSYQELEIEDP 100 (164)
Q Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~p 100 (164)
++...++|.+|...|-.++....
T Consensus 217 ~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 217 HCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp GGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHhChHHHHHHHHHHHhccCC
Confidence 88888999999999888776643
No 235
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=97.61 E-value=0.0027 Score=43.40 Aligned_cols=120 Identities=11% Similarity=0.031 Sum_probs=85.5
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
.+...|+.++|+......++.+|.+......+..++.-.|+|+.|...++-+.+++|.. ......+-. .+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~------~~~a~~yr~-lI--- 75 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY------LPGASQLRH-LV--- 75 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG------HHHHHHHHH-HH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------hHHHHHHHH-HH---
Confidence 46788999999999999999999999999999999999999999999999999999972 211111110 00
Q ss_pred CHHHHHHHHHHHHH-----hCCCCchhh---hhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 84 NVDEALKSYQELEI-----EDPNDFRPY---FCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 84 ~~~~A~~~~~~~~~-----~~p~~~~~~---~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.|...=.+++. ..+..+..| +..+......|+.++|.+.-.+++...|..
T Consensus 76 ---~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 76 ---KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ---HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ---HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 01111112221 122333333 344556666899999999999999988765
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.59 E-value=0.0048 Score=39.38 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=57.5
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hc--cccch--------hhhhhhH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE--IA--EDGNK--------LKEARDV 71 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~--~~~~~--------~~~~~~~ 71 (164)
++.-+|+|..|+-++... +.....+-.+.|+....+|..|+..+++.+. .+ |+.+. +....-.
T Consensus 42 ~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfF 116 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFF 116 (242)
T ss_dssp HHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHH
T ss_pred hhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHH
Confidence 455667777776665432 3445555566788888888888888888773 22 22111 0112334
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 031170 72 RFIMAQIKFLQKNVDEALKSYQELEIEDP 100 (164)
Q Consensus 72 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p 100 (164)
...+|.+.-..|+.++|+.++......+|
T Consensus 117 y~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 117 ESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 44678888888888888888877665544
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.52 E-value=0.001 Score=48.14 Aligned_cols=100 Identities=10% Similarity=-0.040 Sum_probs=74.9
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhcccc-chhhhhhhHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNP--LS----FEALFENALLMDRCGEGEAVIKRLEEALEIAEDG-NKLKEARDVRF 73 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~ 73 (164)
+|..|+..|+|.+|.+.+.++.+.-. ++ .+++.....+|...+++.++...+.++.+....- .++...+.+..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 46789999999999999998887422 22 3456667788999999999999999998764221 11222344555
Q ss_pred HHHHHHH-HccCHHHHHHHHHHHHHhCC
Q 031170 74 IMAQIKF-LQKNVDEALKSYQELEIEDP 100 (164)
Q Consensus 74 ~la~~~~-~~~~~~~A~~~~~~~~~~~p 100 (164)
.-|.++. ..++|.+|..+|-+++....
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 6788888 89999999999998876544
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0026 Score=40.78 Aligned_cols=48 Identities=8% Similarity=-0.115 Sum_probs=40.8
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
-.+.|+++.|.+..+.+ ++...|..+|......|+++-|..+|.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 46789999999988766 6788999999999999999999999888633
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.49 E-value=0.0065 Score=43.93 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=74.8
Q ss_pred HHHHcCCcHHHHHHHHHHHhhccccchhhh----------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKE----------------ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
.....|+.+.|...+.+++.+......... ...+...++..+...|++.+++..+..++..+|-
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~ 203 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY 203 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 334568889999999999998643211100 1223335677888999999999999999999999
Q ss_pred CchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 102 DFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
+..++..+..++...|+..+|++.|.++...
T Consensus 204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 204 REPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887553
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00059 Score=53.32 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
.+..-+..+..+|+++-|+.+.++++...|. ....|..|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4555677888999999999999999999999 7899999999999999999999888775
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.36 E-value=0.0047 Score=44.70 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=70.1
Q ss_pred hcCCchHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch
Q 031170 7 EMGKTQDARNVFEEILAGNPLS----------------------FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK 64 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 64 (164)
..|+.+.|...+.+++....+. ..+...++..+...|++++|+..+..++..+|-
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~--- 203 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY--- 203 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---
Confidence 3578889999999999985332 112335667788999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
...++..+..++...|+..+|+..|+++-.
T Consensus 204 ---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 204 ---REPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677888999999999999999999988644
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.013 Score=43.27 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=72.7
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-ccccchhhhhhhHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGN--PLS----FEALFENALLMDRCGEGEAVIKRLEEALEI-AEDGNKLKEARDVRF 73 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~ 73 (164)
||.++...|++.+|.+.+..+...- ..+ .+.+.....++...+++..|...+.++... .+....+.-...+..
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 4678899999999999999886532 111 456777888999999999999999987532 222111111345666
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 74 IMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 74 ~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..|.++...++|.+|..+|..+...
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8899999999999999999988764
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.20 E-value=0.0058 Score=47.73 Aligned_cols=109 Identities=11% Similarity=-0.061 Sum_probs=64.4
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc--hhhhhhhHHHHHHHHHHHcc
Q 031170 6 SEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN--KLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~~ 83 (164)
...|++++|.+.. ...+++..|..+|..+.+.++++.|+.+|.++-....-.. ........+..++.+....|
T Consensus 663 l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 663 LKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3455566665553 2346778889999999999999999988887532211000 00002333445666666777
Q ss_pred CHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170 84 NVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFA 127 (164)
Q Consensus 84 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~ 127 (164)
++..|..+|.+. .+++ ....+|...+++++|+..-+
T Consensus 738 ~~~~A~~~~~~~-----g~~~---~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 738 KFNLAFNAYWIA-----GDIQ---GAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp CHHHHHHHHHHH-----TCHH---HHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHc-----CCHH---HHHHHHHHcCChHHHHHHHH
Confidence 777776665442 1122 34455666777777777644
No 244
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0027 Score=46.56 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCch-
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP--NDFR- 104 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~- 104 (164)
-..++..+|..+...|++++|.+.|.++.......+. ...+++....+++..+||..+..++.++..... .++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHH
Confidence 3457889999999999999999999999887655332 357778888899999999999999999865422 2222
Q ss_pred ---hhhhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 105 ---PYFCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 105 ---~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
.....|.++...+++..|...|..++.....
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 2234566777799999999999888765433
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.16 E-value=0.019 Score=36.72 Aligned_cols=123 Identities=17% Similarity=0.090 Sum_probs=85.5
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
+-.+|+.++-.-.=+. |..++....++.++.-.|+|..++-.+.+. + .....+..+.||....+|.
T Consensus 14 kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l---N--------T~Ts~YYk~LCy~klKdYk 79 (242)
T 3kae_A 14 RYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHKL---N--------TCTSKYYESLCYKKKKDYK 79 (242)
T ss_dssp HTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHTC---C--------BHHHHHHHHHHHHHTTCHH
T ss_pred hcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHhc---c--------hHHHHHHHHHHHHHHHHHH
Confidence 3456776654443333 444466677788888999999887665432 1 2345566788999999999
Q ss_pred HHHHHHHHHHHh----CCC-------------Cchh-hhhHHHHHHhcCCHHHHHHHHHHHHhhCCCcchhhhHh
Q 031170 87 EALKSYQELEIE----DPN-------------DFRP-YFCKGMIYSLLDRNAEAKEEFAKYRQLSPKKFEVEGYL 143 (164)
Q Consensus 87 ~A~~~~~~~~~~----~p~-------------~~~~-~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~~~~~~~~ 143 (164)
.|+.++++.+.. +|+ +.+- ...+|.++.+.|+.++|+.++.......|--..++..+
T Consensus 80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 999999999943 222 2222 34678999999999999999999999998875444333
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.023 Score=41.84 Aligned_cols=102 Identities=11% Similarity=-0.014 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCch---
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI---EDPNDFR--- 104 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~p~~~~--- 104 (164)
....++.++...|++.+|...+.....-............++.....++...+||.+|...+.++.. ..+..+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4467899999999999999999887643222222222467788889999999999999999988743 2233332
Q ss_pred -hhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 105 -PYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 105 -~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
.+...|.++...+++.+|-.+|..+...
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3456788888899999999998888754
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.05 E-value=0.014 Score=42.38 Aligned_cols=100 Identities=8% Similarity=-0.110 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCc----hhh
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED---PNDF----RPY 106 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~----~~~ 106 (164)
.+|.+|+..|+|.+|...+.+..+-....+...-..+++..-..+|...+++.++...+.++.... +.++ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 689999999999999999988888654422211235667777889999999999999998886542 1222 223
Q ss_pred hhHHHHHH-hcCCHHHHHHHHHHHHhhC
Q 031170 107 FCKGMIYS-LLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 107 ~~~~~~~~-~~~~~~~A~~~l~~~~~~~ 133 (164)
..-|.++. ..++|..|...|-.++...
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 56688888 8999999999999987543
No 248
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0032 Score=47.04 Aligned_cols=129 Identities=14% Similarity=0.078 Sum_probs=61.4
Q ss_pred hhcCCchHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCCcHHH----------HHHHHHHHhhccccch
Q 031170 6 SEMGKTQDARNVFEEILA-----------GNPLSFEALFENALLMDRCGEGEAV----------IKRLEEALEIAEDGNK 64 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~~~~~~A----------~~~~~~a~~~~~~~~~ 64 (164)
+..+++++|.++-..++. .++=...+|+-.+.++...|+.... ...+-.+++..--..+
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 456788888887766551 1233455677777777777766543 2333444443322222
Q ss_pred hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 031170 65 LKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND-------FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSPKK 136 (164)
Q Consensus 65 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p~~ 136 (164)
.......+..+-+.|...+.+++|..+..++. .|.. ..-++..|.++...+++.+|.++|..+++..|.+
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 22235666788999999999999999999874 4532 2235678999999999999999999999998876
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.62 E-value=0.011 Score=40.37 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=34.7
Q ss_pred HHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 031170 39 MDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPND 102 (164)
Q Consensus 39 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 102 (164)
.++.|+.++|+..+...++..|. +......+.+++.-.|+|++|.+-++.+.+.+|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~------da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44555666666666666666665 45555555666666666666666666666665554
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.48 E-value=0.033 Score=41.66 Aligned_cols=59 Identities=5% Similarity=-0.111 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
.+|.+..-...++.|..+|.+|+.+.|+ ....+..+|.+....|+.-.|+-+|-+++..
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 4555555555555555555555555555 4455555555555555555555555555443
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.43 E-value=0.014 Score=43.61 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=51.6
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
|.+......++.|..+|.+++...|++..++..+|.+....|+.-+|+-+|-+++-....
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 344445567889999999999999999999999999999999999999999998876443
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.30 E-value=0.052 Score=44.74 Aligned_cols=121 Identities=8% Similarity=-0.049 Sum_probs=84.3
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccch-----------------hhh
Q 031170 5 LSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNK-----------------LKE 67 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~ 67 (164)
+...+.++-|.+ .+...|.++...+.+|.+++..|++++|..+|+++..-...... ...
T Consensus 822 l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 897 (1139)
T 4fhn_B 822 LFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 897 (1139)
T ss_dssp HHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred HHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccccc
Confidence 445566655543 34456778888899999999999999999999887432111000 000
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCch-----hhhhHHHHHHhcCCHHHHHHHHHHH
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFR-----PYFCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
...++..+..++...+.++.++++.+.++...+.+.. .|..+=..+...|++++|...+...
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 1345667788899999999999999999987654432 3444555667789999998877544
No 253
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.11 Score=40.45 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCchhhhhH-------------HHHHHhcCCHHHHHHHH
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEI--------EDPNDFRPYFCK-------------GMIYSLLDRNAEAKEEF 126 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~-------------~~~~~~~~~~~~A~~~l 126 (164)
....|..+|..+...++++.|+.+|.++-. ....+.+.+..+ ..++.+.|++++|++.|
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHH
Confidence 367889999999999999999999998511 112222222222 23455578888888877
Q ss_pred HHH
Q 031170 127 AKY 129 (164)
Q Consensus 127 ~~~ 129 (164)
.+.
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 654
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.17 E-value=0.11 Score=42.43 Aligned_cols=90 Identities=10% Similarity=-0.082 Sum_probs=64.0
Q ss_pred hhhhcCCchHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAG----NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
.|.+.|+.++|..+|.++... ..-+...|..+...+.+.|+.++|..+|.+....+-.. +...+..+-.++
T Consensus 136 glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-----DvvTYntLI~gl 210 (1134)
T 3spa_A 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-----DLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----cHHHHHHHHHHH
Confidence 567788888888888765432 23356778888888888888889988888887754220 244455566677
Q ss_pred HHccC-HHHHHHHHHHHHHh
Q 031170 80 FLQKN-VDEALKSYQELEIE 98 (164)
Q Consensus 80 ~~~~~-~~~A~~~~~~~~~~ 98 (164)
.+.|+ .+.|.+++++....
T Consensus 211 cK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHc
Confidence 77776 46788888887765
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.10 E-value=0.16 Score=41.38 Aligned_cols=96 Identities=9% Similarity=-0.117 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----ccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCc
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEI-----AEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED-PNDF 103 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 103 (164)
..+..+...+.+.|+.++|..+|....+. .|+ ...+..+-..+.+.|++++|.+.|++..... .-+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 35778889999999999999999775432 344 6677788889999999999999999987653 2244
Q ss_pred hhhhhHHHHHHhcCCH-HHHHHHHHHHHhh
Q 031170 104 RPYFCKGMIYSLLDRN-AEAKEEFAKYRQL 132 (164)
Q Consensus 104 ~~~~~~~~~~~~~~~~-~~A~~~l~~~~~~ 132 (164)
..+..+...+.+.|+. ++|.+.|++....
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 4556666677778874 7888999888765
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.77 E-value=0.12 Score=42.58 Aligned_cols=94 Identities=10% Similarity=-0.117 Sum_probs=70.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGN-----------------------PLSFEALFENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~-----------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
+|+++...|++++|..+|+++-..- ..-+..|..+..++.+.+.++.++.....|++
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4789999999999999998873211 11234566778899999999999999999999
Q ss_pred hccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 58 IAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 58 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
..+..... .....|..+-..+...|+|++|...+...
T Consensus 928 ~~~~~~~~-~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 928 SKETDDED-LSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HCCSCCHH-HHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred hccCCChh-hHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 76543221 12346677888899999999998877554
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.73 E-value=0.14 Score=39.35 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=74.4
Q ss_pred CCchHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccC
Q 031170 9 GKTQDARNVFEEILAGNPLSFEA----LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKN 84 (164)
Q Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~----~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 84 (164)
++.+.|...+.......+-+... +..++.-....+...++...+.+......+ ....-.++...+..|+
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-------TSLIERRVRMALGTGD 300 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-------HHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-------hHHHHHHHHHHHHCCC
Confidence 46677888887765433333222 222333333344356777777776544333 2223334445667899
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
++.|..+|..+...........|.+|..+...|+.++|..+|.++..
T Consensus 301 ~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999776554334566788999999999999999999999875
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.33 Score=31.08 Aligned_cols=89 Identities=16% Similarity=-0.006 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 031170 27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE-------- 98 (164)
Q Consensus 27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 98 (164)
.|++..+.++ ++.|+++.|.+..+.. + ....|..+|......|+++-|..||+++-..
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~ 71 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----N------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYL 71 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----C------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----C------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHH
Confidence 4566666554 6889999999887664 2 4678999999999999999999999884211
Q ss_pred CCCCchhh-------------hhHHHHHHhcCCHHHHHHHHHHH
Q 031170 99 DPNDFRPY-------------FCKGMIYSLLDRNAEAKEEFAKY 129 (164)
Q Consensus 99 ~p~~~~~~-------------~~~~~~~~~~~~~~~A~~~l~~~ 129 (164)
.-.+.+-+ ...-.++...|+.++++..|.+.
T Consensus 72 ~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 01111111 11233455678888888887654
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.13 Score=38.54 Aligned_cols=73 Identities=10% Similarity=-0.040 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc-hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN-KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
...+..+-..|+..+.|++|..+..++. .|... .......+.+.+|.++..+++|.+|..++..++...|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3456777889999999999999999884 44321 1111256677899999999999999999999999887654
No 260
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.79 E-value=0.2 Score=30.84 Aligned_cols=54 Identities=13% Similarity=0.000 Sum_probs=28.5
Q ss_pred HHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 38 LMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 38 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
....+|+-++--+.+...+...+. .++.++.+|..|-+.|+..+|-+.+.++-+
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~------~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEV------SASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCCC------ChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 445555555555555554333332 355666666666666666666666655544
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.05 E-value=0.87 Score=31.92 Aligned_cols=128 Identities=9% Similarity=0.021 Sum_probs=70.0
Q ss_pred hhhcCCchHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHHcCCc--HHHHHHHHHHHhhccccch------------
Q 031170 5 LSEMGKTQDARNVFEEILAG--NPLS----FEALFENALLMDRCGEG--EAVIKRLEEALEIAEDGNK------------ 64 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~--~p~~----~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~------------ 64 (164)
|...++|++|++++...... .-+. .+....+..+|.+.+-. ++.+.-+.+.++..|....
T Consensus 43 y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~W 122 (312)
T 2wpv_A 43 YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNW 122 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Confidence 45567777777776554332 1111 11222233444444322 3344444455554332221
Q ss_pred -------hhhhhhHHHHHHHHHHHccCHHHHHHHHHHHH----------------H---hCCCCchhhhhHHH-HHHhcC
Q 031170 65 -------LKEARDVRFIMAQIKFLQKNVDEALKSYQELE----------------I---EDPNDFRPYFCKGM-IYSLLD 117 (164)
Q Consensus 65 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----------------~---~~p~~~~~~~~~~~-~~~~~~ 117 (164)
..+++..+..+|..+...|++.+|..+|-..- . ..|...+.+..++. -|.-.|
T Consensus 123 S~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~ 202 (312)
T 2wpv_A 123 SIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFIS 202 (312)
T ss_dssp HHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 12256788899999999999999998774210 1 12223344444444 334488
Q ss_pred CHHHHHHHHHHHHhh
Q 031170 118 RNAEAKEEFAKYRQL 132 (164)
Q Consensus 118 ~~~~A~~~l~~~~~~ 132 (164)
+...|...+....+.
T Consensus 203 n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 203 NISFAHESKDIFLER 217 (312)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888887766543
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.67 E-value=0.42 Score=36.84 Aligned_cols=119 Identities=11% Similarity=0.052 Sum_probs=79.7
Q ss_pred cCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHH
Q 031170 8 MGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDE 87 (164)
Q Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 87 (164)
.+...++...+.+.....+++..... .+...+..|+++.|...|.++-..... .....+.+|..+...|+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~r~Alr~~d~~~a~~~~~~l~~~~~~------~~r~~YW~~ra~~~~g~~~~ 337 (618)
T 1qsa_A 265 NDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTGDRRGLNTWLARLPMEAKE------KDEWRYWQADLLLERGREAE 337 (618)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTGGG------SHHHHHHHHHHHHHTTCHHH
T ss_pred cCCChHHHHHHHhccccCCChHHHHH-HHHHHHHCCCHHHHHHHHHHccccccc------cHhHHHHHHHHHHHcCCHHH
Confidence 34366777888877665544433333 333455779999999988775442222 46678899999999999999
Q ss_pred HHHHHHHHHHhC-------------CC-----C-----c-----hhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 88 ALKSYQELEIED-------------PN-----D-----F-----RPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 88 A~~~~~~~~~~~-------------p~-----~-----~-----~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
|..+|+++.... |. . . ...+..+..+...|....|...+.......
T Consensus 338 a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~ 411 (618)
T 1qsa_A 338 AKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK 411 (618)
T ss_dssp HHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC
Confidence 999998876421 00 0 0 112445667778899999988888776543
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.65 E-value=2.2 Score=34.66 Aligned_cols=90 Identities=9% Similarity=-0.062 Sum_probs=49.5
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIED--------------- 99 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 99 (164)
+...+...|.++-|.. .+.-.|. .+...+.+|.+++..|++++|..+|+++-..-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ 885 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 885 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhh
Confidence 3344455555554432 3333444 23344666677777777777777666543210
Q ss_pred ------CCC--chhhhhHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 031170 100 ------PND--FRPYFCKGMIYSLLDRNAEAKEEFAKYRQLSP 134 (164)
Q Consensus 100 ------p~~--~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~p 134 (164)
++. ..-+...+.++...+-++-+++..+.|+....
T Consensus 886 ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 886 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 000 01234556666667888888888888886543
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.49 E-value=1.9 Score=28.12 Aligned_cols=80 Identities=8% Similarity=-0.130 Sum_probs=54.3
Q ss_pred HHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHH
Q 031170 16 NVFEEILAG---------NPLSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVD 86 (164)
Q Consensus 16 ~~~~~~l~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 86 (164)
.++++++.. +|....+|...+..+ ..+...++...|..+....-... .+..+...|..+...|++.
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~----~AlfYe~wA~~lE~~g~~~ 132 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTK----LSLFYEEFSKLLENAQFFL 132 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTT----BHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHH----HHHHHHHHHHHHHHcCCHH
Confidence 456666553 233344566666554 23445688888888777654422 4666778899999999999
Q ss_pred HHHHHHHHHHHhCC
Q 031170 87 EALKSYQELEIEDP 100 (164)
Q Consensus 87 ~A~~~~~~~~~~~p 100 (164)
+|...|+..+....
T Consensus 133 ~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 133 EAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998644
No 265
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=89.92 E-value=1.3 Score=28.96 Aligned_cols=86 Identities=8% Similarity=-0.077 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhH
Q 031170 30 EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCK 109 (164)
Q Consensus 30 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 109 (164)
...+-+|.+++..++|.+|...|..|++..|...... ...++..+--+-...|+... ...+++ .+. ..+..+
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~-k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L 86 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKN-KRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV 86 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHH-HHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence 3467899999999999999999999999988733221 12333344445566777653 333332 222 234444
Q ss_pred HHHHHhcCCHHHHHH
Q 031170 110 GMIYSLLDRNAEAKE 124 (164)
Q Consensus 110 ~~~~~~~~~~~~A~~ 124 (164)
.. ..+.|+...-..
T Consensus 87 ~~-Avr~Gdl~~f~~ 100 (203)
T 3t5x_A 87 TR-AVSEGNLLLLHE 100 (203)
T ss_dssp HH-HHHHTCHHHHHH
T ss_pred HH-HHHhCCHHHHHH
Confidence 44 345676544333
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.60 E-value=4 Score=28.61 Aligned_cols=121 Identities=12% Similarity=-0.027 Sum_probs=61.0
Q ss_pred hhcCCchHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHH
Q 031170 6 SEMGKTQDARNVFEEILAGN----P--LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIK 79 (164)
Q Consensus 6 ~~~~~~~~A~~~~~~~l~~~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 79 (164)
+..|+|=+|-+.|+.+..+. . .-.+.++.-+..+++.|++..|.++..-.++......... .....-.+..++
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~-~~~~~~rl~~l~ 102 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV-DDISVARLVRLI 102 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-SHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 34455556655555444431 1 1123344555566666666666555444444322211110 122222344444
Q ss_pred HHccCHH-HHHHHHHHHHHh-------CCCCchhhhhHHHHHHhcCCHHHHHHHHH
Q 031170 80 FLQKNVD-EALKSYQELEIE-------DPNDFRPYFCKGMIYSLLDRNAEAKEEFA 127 (164)
Q Consensus 80 ~~~~~~~-~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~l~ 127 (164)
.....-+ .=.++..++++- .-.++..+..+|..+...|++.+|..+|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3322111 113333444432 12367788899999999999999998874
No 267
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=89.28 E-value=2.4 Score=26.63 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=10.9
Q ss_pred hhhcCCchHHHHHHHHHHhcCC
Q 031170 5 LSEMGKTQDARNVFEEILAGNP 26 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p 26 (164)
++..|+|-+|=++++.+....+
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~ 63 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYG 63 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTC
T ss_pred HHhCCCchHHHHHHHHHHHhcC
Confidence 3444555555555555555443
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=89.28 E-value=1.3 Score=23.86 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
.+|..+...|++++|..+|-+|+..+|.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3556666666666666666666666665
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=88.69 E-value=1.2 Score=23.91 Aligned_cols=32 Identities=3% Similarity=-0.021 Sum_probs=23.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
..+|..+...|++++|..+|-+|+...|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 35677777788888888877777777666444
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.67 E-value=2.4 Score=26.21 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=74.8
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc---cccchhhh--------hhhH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA---EDGNKLKE--------ARDV 71 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~--------~~~~ 71 (164)
.-+...|..++..+...+..+-.|....-|+- -++ ...-+-+--.+.++..=+.+ +=...... ...-
T Consensus 15 K~~ildG~v~qGveii~k~~~ssni~E~NW~I-CNi-iD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se 92 (172)
T 1wy6_A 15 KKFLLDGYIDEGVKIVLEITKSSTKSEYNWFI-CNL-LESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNE 92 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHH-HHH-HHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCH
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCCccccceee-eec-chhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHH
Confidence 34556788888888888888766654433331 111 11122222222222221111 10000000 0111
Q ss_pred HHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 72 RFIM-AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 72 ~~~l-a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
++.+ -.....+|.-++--+.+...+...+-+++.++.+|.+|...|+..+|-+.+.+|-+.-
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 2222 3455677888888888877767777788999999999999999999999999987654
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=88.54 E-value=3.2 Score=26.07 Aligned_cols=66 Identities=12% Similarity=-0.057 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhcccc--chhhhhhhHH-HHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 33 FENALLMDRCGEGEAVIKRLEEALEIAEDG--NKLKEARDVR-FIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 33 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
+..+..++..|+|-+|-+.++.+.+..+.. ....-..-++ +..|..+...|++..|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455677888899999999999999987653 2111123334 44566778899999999999999774
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.21 E-value=5.3 Score=28.30 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=11.9
Q ss_pred chhhhhHHHHHHhcCCHHHHHHHH
Q 031170 103 FRPYFCKGMIYSLLDRNAEAKEEF 126 (164)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~A~~~l 126 (164)
+..+..+|..+...+++.+|..+|
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Confidence 344444555555555555554444
No 273
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=86.96 E-value=3.4 Score=30.64 Aligned_cols=93 Identities=10% Similarity=0.061 Sum_probs=62.1
Q ss_pred CchHHHHHHHHHHhcCCCC------------HHH-H---HHHHHHHHHcCCcHHHHHHHHHHHhhcc--ccch--hhhhh
Q 031170 10 KTQDARNVFEEILAGNPLS------------FEA-L---FENALLMDRCGEGEAVIKRLEEALEIAE--DGNK--LKEAR 69 (164)
Q Consensus 10 ~~~~A~~~~~~~l~~~p~~------------~~~-~---~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~--~~~~~ 69 (164)
..++|...+.++....-++ -.+ + ..+-.+|++.++...+...+...-...+ .... .....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 3566777777776652211 111 1 2344689999999999888865433322 1110 11134
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIE-DPND 102 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~~ 102 (164)
.+.+.+|.++..+++|.+|.+++..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 66778999999999999999999999998 7755
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.88 E-value=6.5 Score=27.86 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=69.4
Q ss_pred hhhcCCchHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCC--cHHHHHHHHHHHhhccccc-------------
Q 031170 5 LSEMGKTQDARNVFEEILAGN--PLS----FEALFENALLMDRCGE--GEAVIKRLEEALEIAEDGN------------- 63 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~--p~~----~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~------------- 63 (164)
|...++|++|++++-.....- -+. .+....+..+|.+.+- .++.+.-+-+.+...|...
T Consensus 45 y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~W 124 (336)
T 3lpz_A 45 YSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDW 124 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 556777788877655443320 111 1222233355555441 2334444455555444321
Q ss_pred ------hhhhhhhHHHHHHHHHHHccCHHHHHHHHHH-------HH---------HhCCCCchhhhhHHHH-HHhcCCHH
Q 031170 64 ------KLKEARDVRFIMAQIKFLQKNVDEALKSYQE-------LE---------IEDPNDFRPYFCKGMI-YSLLDRNA 120 (164)
Q Consensus 64 ------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------~~---------~~~p~~~~~~~~~~~~-~~~~~~~~ 120 (164)
....++..+..+|..+...+++.+|..+|-- .+ ...|...+.+..++.+ |...++..
T Consensus 125 S~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~ 204 (336)
T 3lpz_A 125 SKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVR 204 (336)
T ss_dssp HHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHH
Confidence 1122567888999999999999999888721 00 0112233444555553 44489998
Q ss_pred HHHHHHHHHHh
Q 031170 121 EAKEEFAKYRQ 131 (164)
Q Consensus 121 ~A~~~l~~~~~ 131 (164)
.|...+...++
T Consensus 205 ~A~~~~~~f~~ 215 (336)
T 3lpz_A 205 AANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876655443
No 275
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=86.25 E-value=4.3 Score=30.10 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=48.1
Q ss_pred hhhhhcCCchHHHHHHHHHHhcC--------CCC--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-cccc
Q 031170 3 RLLSEMGKTQDARNVFEEILAGN--------PLS--FEALFENALLMDRCGEGEAVIKRLEEALEI-AEDG 62 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~ 62 (164)
++|++.++..-|..+++.+-... |.. ....+-+|.++..+++|.+|...+..|++. .|..
T Consensus 184 kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 184 NIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 57899999999999997654432 222 334678999999999999999999999999 8753
No 276
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=85.85 E-value=0.41 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=10.9
Q ss_pred chhhhhcCCchHHHHHHHHHHh
Q 031170 2 ARLLSEMGKTQDARNVFEEILA 23 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~ 23 (164)
|+-+...|+|+.|+.+|+.+++
T Consensus 19 ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 19 AREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHH
Confidence 3444445555555555554443
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=85.76 E-value=2.4 Score=26.74 Aligned_cols=31 Identities=16% Similarity=-0.005 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
+..+...|..+...|++.+|.+.|+..+...
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444555666666666666666666666543
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.59 E-value=3.4 Score=33.62 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=13.7
Q ss_pred chhhhhcCCchHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEI 21 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~ 21 (164)
|+++...|++++|..+|+++
T Consensus 847 gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 847 ALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 56667777777777777655
No 279
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=85.44 E-value=2.2 Score=24.21 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhccc
Q 031170 34 ENALLMDRCGEGEAVIKRLEEALEIAED 61 (164)
Q Consensus 34 ~la~~~~~~~~~~~A~~~~~~a~~~~~~ 61 (164)
.+|..+...|+++.|+.+|-+|+..+|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 5777778888888888888888888776
No 280
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=85.40 E-value=1 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=23.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 72 RFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 72 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
...+|+-+...|+|+.|+.+|+.++..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456888899999999999999998875
No 281
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=85.37 E-value=3.5 Score=23.29 Aligned_cols=61 Identities=16% Similarity=0.012 Sum_probs=36.1
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
.|..++..|+|-+|-+.++.+....|......-..-+....|..+...|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 456667778888888888888877654111111122333345555566666 7677766655
No 282
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=84.78 E-value=2.3 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.016 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 31 ALFENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 31 ~~~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
.+...+..+...|+|++|+++.+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455678888899999999887777654
No 283
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.10 E-value=11 Score=27.22 Aligned_cols=93 Identities=8% Similarity=-0.077 Sum_probs=63.2
Q ss_pred hhhcCCchHHHHHHHHHHhcC-------C----------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccc--hh
Q 031170 5 LSEMGKTQDARNVFEEILAGN-------P----------LSFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGN--KL 65 (164)
Q Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-------p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~ 65 (164)
.....+.++|.+.++++...- + ....+...++..++..|+.++|...++++-..-...+ .+
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~ 165 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPL 165 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccH
Confidence 345678899999998774321 0 0133456788899999999999999988876432211 12
Q ss_pred hhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 66 KEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 66 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
.....++...+..+...+++..+...+-..+.
T Consensus 166 ~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 166 RITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22345556678888888999888777666554
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=82.02 E-value=1.8 Score=28.63 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=39.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCchh
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQ---------KNVDEALKSYQELEIEDPNDFRP 105 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~ 105 (164)
..++++.|.|++|...+++.+..++. .......|..+-... -.|+.-++...+-++..-+...+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s------~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki~~fve~~~~~a~~ 193 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPT------TQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKMLRFLESHLDDAEP 193 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGG------GHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCC------chHHHHHHHHHHhccCcccHHHHhccHHHHHHHHHHHHHHHhcccch
Confidence 35778899999999999999888776 444555454444333 34555544444445443333333
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=81.63 E-value=3.4 Score=23.24 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 71 VRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 71 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
.+-..+..+...|.|++||++.+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344688999999999999999988764
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=81.56 E-value=6.6 Score=25.54 Aligned_cols=46 Identities=9% Similarity=-0.187 Sum_probs=33.4
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHcCCcH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALF-----ENALLMDRCGEGE 46 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-----~la~~~~~~~~~~ 46 (164)
+|+++...++|.+|.+.+..++...|....... .+.-+.+-.|+..
T Consensus 20 lGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 20 VGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 377888999999999999999999987765432 2223445667654
No 287
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=80.64 E-value=2.5 Score=23.94 Aligned_cols=32 Identities=3% Similarity=-0.021 Sum_probs=26.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCch
Q 031170 73 FIMAQIKFLQKNVDEALKSYQELEIEDPNDFR 104 (164)
Q Consensus 73 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 104 (164)
..+|..+...|+++.|+.+|-+++...|.-..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 46899999999999999999898888776443
No 288
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.34 E-value=4.6 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=9.5
Q ss_pred HHHccCHHHHHHHHHHHHH
Q 031170 79 KFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 79 ~~~~~~~~~A~~~~~~~~~ 97 (164)
.-..|++++|+.+|.+++.
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3445555555555555443
No 289
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=78.24 E-value=9.2 Score=29.75 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCC
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDR 118 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 118 (164)
...+..|...+..|+|.-|......++..+|++..+...++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3455678888999999999999999999999999999999999988664
No 290
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=77.79 E-value=1.6 Score=28.34 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=19.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhcccc
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDG 62 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~ 62 (164)
...++++.|.+++|...|++....++++
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 3457889999999999999988887663
No 291
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=77.14 E-value=13 Score=24.57 Aligned_cols=39 Identities=18% Similarity=0.011 Sum_probs=28.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
.+....|.|++|.+.+++....+|........+..+-..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 456778999999999999998888776555444444333
No 292
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=75.91 E-value=10 Score=28.29 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..++..+|++|+-.++|++|+.+.++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456678889999899999999998888865
No 293
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=75.79 E-value=5.9 Score=21.69 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=6.6
Q ss_pred ccCHHHHHHHHHHHH
Q 031170 82 QKNVDEALKSYQELE 96 (164)
Q Consensus 82 ~~~~~~A~~~~~~~~ 96 (164)
.|++++|+.+|.+++
T Consensus 24 ~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 24 EGKVEDAITYYKKAI 38 (83)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444433
No 294
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=74.90 E-value=9.1 Score=21.55 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=40.4
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHH-H-----HHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFE-A-----LFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~-----~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
|..++..|+|-+|=++++.+....|+... . ....|..+...|+. |...+.+++..
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 34577889999999999999998865321 2 22334455677887 99999998874
No 295
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=74.44 E-value=6.4 Score=21.60 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 031170 85 VDEALKSYQELEIEDPND 102 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~ 102 (164)
|.+|++.|.++++..|+.
T Consensus 42 Y~~aie~l~~alk~e~d~ 59 (83)
T 2w2u_A 42 YKKAIEVLAQLVSLYRDG 59 (83)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHCCCH
Confidence 556667777766665543
No 296
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=73.07 E-value=13 Score=27.42 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccccc--hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 48 VIKRLEEALEIAEDGN--KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 48 A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
.+.-++.|+..-|... .......+...+|++|+-.|+|++|+.+.++++..
T Consensus 167 I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 167 IIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3444555555444321 11113456667788888888888888888887753
No 297
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=72.65 E-value=15 Score=23.00 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=46.5
Q ss_pred hhhhcCCchHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAGNPL--SFEALFENALLMDRCGEGEA-VIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
..+-..+|.+.+..++.. +|. .....+.+|..|++.....+ ....+...+.+..+ -.+.+=++|+
T Consensus 17 ~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd---------e~yL~YWIyi 84 (161)
T 2ynq_A 17 ELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD---------EQYMLYWIYI 84 (161)
T ss_dssp HHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC---------HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC---------HHHHHHHHHH
Confidence 344556777766665443 333 34567788888888877753 33333333333322 2233445666
Q ss_pred HccCHHHHHHHHHH
Q 031170 81 LQKNVDEALKSYQE 94 (164)
Q Consensus 81 ~~~~~~~A~~~~~~ 94 (164)
-.|++++|+.....
T Consensus 85 GRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 85 GRSQSEEALELART 98 (161)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred cCCchHHHHHHHHh
Confidence 67888888887765
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=72.59 E-value=7.5 Score=21.28 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCc
Q 031170 46 EAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDF 103 (164)
Q Consensus 46 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 103 (164)
+.|+.++.+|++.+.... . -....-|.+|++.|.++++..|+..
T Consensus 9 ~~Ai~lv~~Ave~D~~g~-------y-------~eAl~lY~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGK-------V-------EDAITYYKKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHHHHTTC-------H-------HHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHHHhcc-------H-------HHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 467777777777654311 1 1112236677788888777665543
No 299
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=71.38 E-value=14 Score=27.30 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=29.2
Q ss_pred HHHHHHHHhhccccc--hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 49 IKRLEEALEIAEDGN--KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 49 ~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
+.-++.|+..-|... .......++..+|++|+-.|+|++|+...++++.
T Consensus 174 ~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 174 ISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 444555555444321 1111345666778888888888888888877775
No 300
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=69.85 E-value=12 Score=21.02 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=4.8
Q ss_pred cCHHHHHHHHHH
Q 031170 83 KNVDEALKSYQE 94 (164)
Q Consensus 83 ~~~~~A~~~~~~ 94 (164)
|+|++|+.+|.+
T Consensus 29 g~y~eAl~~Y~~ 40 (93)
T 1wfd_A 29 SRYQQALVCYQE 40 (93)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 344444443333
No 301
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=69.18 E-value=15 Score=27.19 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..+...+|++|+-+++|++|+...++++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456667888888888888888888888764
No 302
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=69.13 E-value=29 Score=25.16 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhh------------------hhhHHHHHHHHHHHccCHHHHHHH
Q 031170 33 FENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKE------------------ARDVRFIMAQIKFLQKNVDEALKS 91 (164)
Q Consensus 33 ~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~------------------~~~~~~~la~~~~~~~~~~~A~~~ 91 (164)
..+-+++...| +|..|+..+-.+-+.+|..+.+.+ ..-.+..+|..+++.+++.+|+..
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~ 318 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIAS 318 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHH
Confidence 33444555444 455566666665556655443211 123344567777788888888777
Q ss_pred HHHHH
Q 031170 92 YQELE 96 (164)
Q Consensus 92 ~~~~~ 96 (164)
+..+.
T Consensus 319 WA~Aa 323 (472)
T 3re2_A 319 WVDAG 323 (472)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 303
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=68.66 E-value=15 Score=27.12 Aligned_cols=51 Identities=8% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhccccc--hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 48 VIKRLEEALEIAEDGN--KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 48 A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
.+.-++.|+..-|... .......++..+|++|+-.|+|++|+...++++..
T Consensus 179 I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 179 VVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3445566665544321 11123566778899999999999999999998875
No 304
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=68.08 E-value=18 Score=26.74 Aligned_cols=31 Identities=19% Similarity=-0.027 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 68 ARDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
...+...+|++|+-.|+|++|+.+.++++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3567778999999999999999999999964
No 305
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.78 E-value=29 Score=24.46 Aligned_cols=25 Identities=20% Similarity=-0.031 Sum_probs=18.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
...++.++|..|..+.++.++..|.
T Consensus 215 ~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 215 SQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3456777888888888888877664
No 306
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=66.63 E-value=11 Score=20.79 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=13.5
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhh
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
|.-.-..|+|++|+.+|..+++.
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 33345666666666666666554
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.81 E-value=26 Score=23.22 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCCchhhh--hHHHHHHhcCCHHHHHHHHHHHHhhC
Q 031170 87 EALKSYQELEIEDPNDFRPYF--CKGMIYSLLDRNAEAKEEFAKYRQLS 133 (164)
Q Consensus 87 ~A~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~A~~~l~~~~~~~ 133 (164)
.+..+|..+....-...-+.+ ..|..+...|++.+|..+|+..+...
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344455554444433333322 33344444666666666666665554
No 308
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.35 E-value=55 Score=26.94 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=61.7
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSF--EALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 80 (164)
.++.-.+ -+++.+.+..++..+.... .+-+.+|.++.-.|+-+-...++..+.+...+ ...-...+|....
T Consensus 463 la~~GS~-~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e------~vrR~aalgLGll 535 (963)
T 4ady_A 463 LAAMGSA-NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG------NITRGLAVGLALI 535 (963)
T ss_dssp HHSTTCC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH------HHHHHHHHHHHHH
T ss_pred HHhcCCC-CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH------HHHHHHHHHHHhh
Confidence 3344343 3567777777776443211 34567788888888765555555555543221 1111123344444
Q ss_pred HccCHHHHHHHHHHHHHhCCCC---chhhhhHHHHHHhcCCHHHHHH-HHHHHHh
Q 031170 81 LQKNVDEALKSYQELEIEDPND---FRPYFCKGMIYSLLDRNAEAKE-EFAKYRQ 131 (164)
Q Consensus 81 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~-~l~~~~~ 131 (164)
..|+.+.+-...+.... +++. ..+.+.+|..|...|+. .|++ .+..+..
T Consensus 536 ~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhcc
Confidence 55666655555544333 2221 12234456666678885 4444 5555543
No 309
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=64.30 E-value=22 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..++..+|++|+-.++|++|+...++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888888888888888888864
No 310
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=63.66 E-value=21 Score=27.75 Aligned_cols=49 Identities=22% Similarity=0.097 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHcc
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQK 83 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~ 83 (164)
.+.....|...+..|+|.-|.+.+..++..+|+ +..+...++.+|.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~------~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPD------NRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHH
Confidence 344666778888999999999999999999999 6778888888887776
No 311
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=61.96 E-value=10 Score=24.70 Aligned_cols=40 Identities=15% Similarity=0.006 Sum_probs=25.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSL 115 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (164)
-.+....|.+++|.+.+++....++.+......+..+-..
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 4567789999999999999988887766655444444333
No 312
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=61.35 E-value=14 Score=27.50 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHHHHHHhhccccc--hhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 49 IKRLEEALEIAEDGN--KLKEARDVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 49 ~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
++-++.|+..-|... .......++..+|++|+..++|++|+...++++.
T Consensus 158 ~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 158 KEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 444555655544321 1111345677889999999999999999988875
No 313
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=60.03 E-value=50 Score=24.48 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=38.2
Q ss_pred HHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhh------------------hhhHHHHHHHHHHHccCHHHHHHH
Q 031170 33 FENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKE------------------ARDVRFIMAQIKFLQKNVDEALKS 91 (164)
Q Consensus 33 ~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~------------------~~~~~~~la~~~~~~~~~~~A~~~ 91 (164)
..+-+++...| +|..|+..+-.+-+.+|..+.+.. ....+..+|..+++.+++.+|+..
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~ 340 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQA 340 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHH
Confidence 34555555555 556677777766666666443211 123344567777777777777777
Q ss_pred HHHHH
Q 031170 92 YQELE 96 (164)
Q Consensus 92 ~~~~~ 96 (164)
+..+.
T Consensus 341 WA~Aa 345 (550)
T 3u84_A 341 WADTA 345 (550)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 314
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.77 E-value=17 Score=19.77 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=10.7
Q ss_pred HHcCCcHHHHHHHHHHHhh
Q 031170 40 DRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 40 ~~~~~~~~A~~~~~~a~~~ 58 (164)
-..|+|++|+.+|..+++.
T Consensus 24 D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4556666666655555553
No 315
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.59 E-value=34 Score=22.34 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=57.0
Q ss_pred HHHHHHHhhccccchhhhh---hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhh--hhHHHHHHhcCCHHHHHH
Q 031170 50 KRLEEALEIAEDGNKLKEA---RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPY--FCKGMIYSLLDRNAEAKE 124 (164)
Q Consensus 50 ~~~~~a~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~A~~ 124 (164)
.+++++++...+...-..+ ..+|+..+... ..++...+..+|..+....-...-+. ...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6888988876554332222 34444555433 24447788899988877655544444 455666777999999999
Q ss_pred HHHHHHhhCCC
Q 031170 125 EFAKYRQLSPK 135 (164)
Q Consensus 125 ~l~~~~~~~p~ 135 (164)
+|+..+.....
T Consensus 137 Vy~~GI~~~A~ 147 (202)
T 3esl_A 137 LLELGAENNCR 147 (202)
T ss_dssp HHHHHHHTTCB
T ss_pred HHHHHHHcCCc
Confidence 99999988643
No 316
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=59.43 E-value=48 Score=24.06 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHccC--HHHHHHHHHHHHHh-----CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 68 ARDVRFIMAQIKFLQKN--VDEALKSYQELEIE-----DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
.+.++..+|++-...-- ...++..|.+++.. ...+.-++..+|..+.+.+++.+|++.+-.+-
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 46677788887654433 33488888888765 23356678888999999999999999888763
No 317
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=59.23 E-value=30 Score=26.08 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIE 98 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 98 (164)
..++..+|++++-.++|++|.+..++++..
T Consensus 198 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 198 QAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 466778889999899999999999888864
No 318
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=56.69 E-value=40 Score=24.73 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
..++-.+|.+++..++|++|+...++++..
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 456778899999999999999999999864
No 319
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=56.15 E-value=59 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEI 97 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 97 (164)
-.+..+|-.+++.+++.+|+..+..+..
T Consensus 304 YPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 304 YPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 3344667777888888888888766543
No 320
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=55.80 E-value=18 Score=21.28 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=7.9
Q ss_pred HcCCcHHHHHHHHHHHh
Q 031170 41 RCGEGEAVIKRLEEALE 57 (164)
Q Consensus 41 ~~~~~~~A~~~~~~a~~ 57 (164)
..|+|++|+.+|..+++
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 33445554444444444
No 321
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=55.14 E-value=36 Score=21.29 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=55.1
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHH
Q 031170 35 NALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYS 114 (164)
Q Consensus 35 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 114 (164)
-+...+-..+|.+.+..++.. +|..- +....+.+|..|....+...--+ +.++..-.-.....+..=|++.
T Consensus 14 ~a~~afl~~dYs~VI~~L~~~---~~~~L----p~~~kY~LA~SYI~~e~Ls~eQK--enIln~itlkSde~yL~YWIyi 84 (161)
T 2ynq_A 14 QSTELFLQNKYSDVITTLEDY---APEDM----PYVIQYELASSYVMTESLTEEQR--QTVSNNITLKTDEQYMLYWIYI 84 (161)
T ss_dssp HHHHHHTTTCHHHHHHHHTTS---CGGGS----CHHHHHHHHHHHHHTSSSCHHHH--HHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcC---ChhhC----ChhHHHHHHHHHHHccCCCHHHH--HHHHhhCCccCCHHHHHHHHHH
Confidence 345667778899988877653 33311 35778899999998877653321 2233222223344556678888
Q ss_pred hcCCHHHHHHHHHHH
Q 031170 115 LLDRNAEAKEEFAKY 129 (164)
Q Consensus 115 ~~~~~~~A~~~l~~~ 129 (164)
-.|++++|+.+-...
T Consensus 85 GRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 85 GRSQSEEALELARTI 99 (161)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHhc
Confidence 899999999885544
No 322
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=54.96 E-value=46 Score=24.80 Aligned_cols=31 Identities=10% Similarity=-0.241 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
..++-.+|.+++..++|++|....++++...
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4577789999999999999999999998753
No 323
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=54.52 E-value=0.043 Score=41.15 Aligned_cols=47 Identities=17% Similarity=-0.045 Sum_probs=30.5
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRL 52 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 52 (164)
||.++...|+|+.|.+.-+++ +++..|......+...+++.-|.-+-
T Consensus 176 LAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicG 222 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCG 222 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhc
Confidence 466777788888887765544 55566666666666666666654443
No 324
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=53.82 E-value=53 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 13 DARNVFEEILAGNPL--------SFEALFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 13 ~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
.-+..++.++..-|. ...++-.+|.+++-.++|++|....++++..
T Consensus 178 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 178 QVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 344445555554332 3456778899999999999999999999975
No 325
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.11 E-value=61 Score=23.34 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=60.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhhcc----cc-------chhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC
Q 031170 36 ALLMDRCGEGEAVIKRLEEALEIAE----DG-------NKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE---DPN 101 (164)
Q Consensus 36 a~~~~~~~~~~~A~~~~~~a~~~~~----~~-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~ 101 (164)
..+.....+.++|++.+++...... .. ........+...++..|+..|+.++|...++++-.. .++
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 3455677888999999987644321 00 000112345557899999999999999999887542 111
Q ss_pred -Cch----hhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 102 -DFR----PYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 102 -~~~----~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
++. .+...+..+...+++..+....-.++.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111 233445566668888877766666654
No 326
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=52.55 E-value=50 Score=22.13 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL 27 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (164)
|++..+.++|++..+...++...++.
T Consensus 15 AklaeqaeRyddM~~~mk~v~~~~~e 40 (236)
T 3iqu_A 15 AKLAEQAERYEDMAAFMKGAVEKGEE 40 (236)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 56778889999999999999988764
No 327
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.53 E-value=47 Score=27.29 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=21.8
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEA 55 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 55 (164)
|.++.-.|+-+-....+..+.....+...-...+|..+...|+.+.+-..++.+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 334445555444444444444332222111222333333455555544444443
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.51 E-value=48 Score=21.98 Aligned_cols=33 Identities=12% Similarity=-0.153 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
+..+...|..+...|++.+|...|+..+.....
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 445556788999999999999999999987544
No 329
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=52.15 E-value=70 Score=23.74 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHccCH--HHHHHHHHHHHHh-----CCCCchhhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 68 ARDVRFIMAQIKFLQKNV--DEALKSYQELEIE-----DPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
.+.++..||++-...--. ..++..|.+++.. ...+.-++..+|..+.+.+++.+|++.+-.+-
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 466677778776544322 2578888888764 23356677888999999999999999888763
No 330
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=52.08 E-value=47 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
..++-.+|.+++-.|+|++|....++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 556788899999999999999999999874
No 331
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=53.66 E-value=3.8 Score=31.94 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHH
Q 031170 70 DVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEA 122 (164)
Q Consensus 70 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A 122 (164)
...+..|.-.+..|+|.-|......++..+|++..+...++.++.++|.-.+.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 33445677788899999999999999999999999988888888887765443
No 332
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=47.59 E-value=60 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.136 Sum_probs=22.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL 27 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (164)
|++..+.++|++.+....++...+|.
T Consensus 12 AklaeqaeRyddm~~~mk~v~~~~~e 37 (234)
T 2br9_A 12 AKLAEQAERYDEMVESMKKVAGMDVE 37 (234)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhCHHHHHHHHHHHhcccCC
Confidence 56677889999999999999987663
No 333
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=50.95 E-value=4.5 Score=31.55 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=39.3
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHH
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAV 48 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A 48 (164)
|+..+..|+|.-|.++.+.++..+|++.++...++.++.+.|.-.+.
T Consensus 468 a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 468 MRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 45567789999999999999999999999999999998888855443
No 334
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=44.89 E-value=56 Score=24.40 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=31.3
Q ss_pred HHHHHHHHhhccccc---hhhhhhhHHHHHHHHHH------HccCHHHHHHHHHHHHH
Q 031170 49 IKRLEEALEIAEDGN---KLKEARDVRFIMAQIKF------LQKNVDEALKSYQELEI 97 (164)
Q Consensus 49 ~~~~~~a~~~~~~~~---~~~~~~~~~~~la~~~~------~~~~~~~A~~~~~~~~~ 97 (164)
++-++.|+..-|... .......++..+|++|+ ..++|++|+...++++.
T Consensus 165 ~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 165 EAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 444555555444321 11113456667888777 57899999999999985
No 335
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=43.72 E-value=37 Score=25.12 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHcc---------CHHHHHHHHHHHHHh
Q 031170 68 ARDVRFIMAQIKFLQK---------NVDEALKSYQELEIE 98 (164)
Q Consensus 68 ~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~ 98 (164)
...+...+|++|+-.+ +|++|++..++++..
T Consensus 187 k~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~ 226 (482)
T 3otn_A 187 MGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKS 226 (482)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHcc
Confidence 3566778888888887 899999998888864
No 336
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=43.02 E-value=72 Score=21.24 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHH-----HHccCHHHHHHHHHHHHHh-----CCCC---chhhhhHHHHHHh-cCCHHHHHHHHHHHHhh
Q 031170 74 IMAQIK-----FLQKNVDEALKSYQELEIE-----DPND---FRPYFCKGMIYSL-LDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 74 ~la~~~-----~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~~~~~~~~-~~~~~~A~~~l~~~~~~ 132 (164)
+.|+.| +..|+.+.|...|+.+... .|.+ ....++.+..|.. +++.++|....++++..
T Consensus 125 MKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 125 VKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556554 3567788999999988753 2222 3334444554444 89999999999999765
No 337
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.86 E-value=60 Score=20.33 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=51.5
Q ss_pred HHHHHHHHhhccccchhhhh---hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchh--hhhHHHHHHhcCCHHHHH
Q 031170 49 IKRLEEALEIAEDGNKLKEA---RDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRP--YFCKGMIYSLLDRNAEAK 123 (164)
Q Consensus 49 ~~~~~~a~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~A~ 123 (164)
..+++++++...+...-..+ ..+|+..+.. .++ +..+|..+....-...-+ +...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 56788888876553322222 3444444443 233 566777766654444444 445566777799999999
Q ss_pred HHHHHHHhhCCC
Q 031170 124 EEFAKYRQLSPK 135 (164)
Q Consensus 124 ~~l~~~~~~~p~ 135 (164)
++|+..+.....
T Consensus 117 ~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 117 AIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHTTCB
T ss_pred HHHHHHHHcCCC
Confidence 999999988644
No 338
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=42.54 E-value=78 Score=21.56 Aligned_cols=26 Identities=8% Similarity=0.136 Sum_probs=22.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCC
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPL 27 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (164)
|++..+.++|++.++...++...++.
T Consensus 38 AKLaeqaeRYddMv~~MK~v~~~~~e 63 (261)
T 3ubw_A 38 AKLAEQAERYDEMVESMKKVAGMDVE 63 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCc
Confidence 56677889999999999999987764
No 339
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=42.47 E-value=1e+02 Score=23.22 Aligned_cols=46 Identities=9% Similarity=-0.144 Sum_probs=31.1
Q ss_pred hcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 031170 7 EMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEE 54 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 54 (164)
...+.+-|..+..+. .-|+-.+.+...=+-++..|+|++|....-.
T Consensus 341 ~l~n~~lA~~lA~R~--~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 341 VLQNPDLALRMAVRN--NLAGAEELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp TTCCHHHHHHHHHHT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhc--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345666666666554 4577666666666788888999998765543
No 340
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=40.55 E-value=94 Score=21.89 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=18.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Q 031170 77 QIKFLQKNVDEALKSYQELEIEDPN 101 (164)
Q Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~p~ 101 (164)
...++.++|..|..+.++.++..|.
T Consensus 206 ~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 206 NLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3466777888888888888877554
No 341
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=39.55 E-value=67 Score=23.87 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhccccc----hhhhhhhHHHHHHHHHHHc------cCHHHHHHHHHHHHH
Q 031170 48 VIKRLEEALEIAEDGN----KLKEARDVRFIMAQIKFLQ------KNVDEALKSYQELEI 97 (164)
Q Consensus 48 A~~~~~~a~~~~~~~~----~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~ 97 (164)
.++-++.|+..-|... .......++..+|++|+-. ++|++|++..++++.
T Consensus 172 I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 172 IQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 3455566665544311 1112356677888888864 899999999999986
No 342
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=39.39 E-value=89 Score=21.27 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.1
Q ss_pred chhhhhcCCchHHHHHHHHHHhcC
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGN 25 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~ 25 (164)
|++..+.++|++.+....++...+
T Consensus 15 AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 15 AKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHccC
Confidence 566778899999999999999876
No 343
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=39.01 E-value=51 Score=18.41 Aligned_cols=31 Identities=16% Similarity=0.015 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELEIED 99 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 99 (164)
.+....-|.-++..++|.+|...|+++....
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 4444555666777788888888887777553
No 344
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=38.94 E-value=24 Score=15.77 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 27 LSFEALFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 27 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
++.+.|-.-+.+ +-|++|+..|+.+++.+
T Consensus 4 ddSDiWDdtALI----KayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 4 DDSDIWDDTALI----KAYDKAVASFKHALKNG 32 (37)
T ss_pred cchhhhhhHHHH----HHHHHHHHHHHHHHhcC
Confidence 445555544443 23788999888888754
No 345
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.85 E-value=74 Score=23.86 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh
Q 031170 69 RDVRFIMAQIKFLQ--------KNVDEALKSYQELEIE 98 (164)
Q Consensus 69 ~~~~~~la~~~~~~--------~~~~~A~~~~~~~~~~ 98 (164)
..++..+|++|+-. ++|++|+...++++..
T Consensus 196 ~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~~ 233 (535)
T 3ihv_A 196 GAALGLLTKVYATWAGYPVKDESKWEAAAKTARILVES 233 (535)
T ss_dssp HHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHhc
Confidence 45666788888775 4688888888888864
No 346
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=37.92 E-value=64 Score=19.24 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 75 MAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 75 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
...+++..++.+..++.++..-..-.+.+....-.+.......+..+|.+++++....
T Consensus 46 ASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 46 ASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4567778889999888887663322222333335555555566677888888887543
No 347
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=37.70 E-value=1.1e+02 Score=22.97 Aligned_cols=30 Identities=20% Similarity=-0.022 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
..++-.+|.+++..++|++|....++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999864
No 348
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=36.76 E-value=97 Score=20.93 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.6
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcCCC
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGNPL 27 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (164)
+|++..+.++|++.....+++...++.
T Consensus 10 ~AklaeqaeRyddM~~~Mk~v~~~~~e 36 (248)
T 3uzd_A 10 KARLAEQAERYDDMAAAMKNVTELNEP 36 (248)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 356778889999999999999987764
No 349
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=35.25 E-value=1.1e+02 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.4
Q ss_pred CchhhhhcCCchHHHHHHH
Q 031170 1 MARLLSEMGKTQDARNVFE 19 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~ 19 (164)
|+..+...|+|.+|.-++-
T Consensus 17 La~~h~~~~n~~EAa~cl~ 35 (428)
T 2wm9_A 17 MARIHVKNGDLSEAAMCYV 35 (428)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 4667888899999988875
No 350
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=35.18 E-value=40 Score=25.85 Aligned_cols=88 Identities=13% Similarity=0.081 Sum_probs=62.4
Q ss_pred hhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc--cccchhhhhhhHHHHHHHHHH
Q 031170 3 RLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCGEGEAVIKRLEEALEIA--EDGNKLKEARDVRFIMAQIKF 80 (164)
Q Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~la~~~~ 80 (164)
..|...|-|++-+.+++.++...--.......+|.+|.+- ++++-.++++.-...- |..-........|..+.-+|.
T Consensus 237 ~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 237 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp SSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHh
Confidence 4577899999999999999988877888888899777654 6777777765432211 111111123556778888899
Q ss_pred HccCHHHHHHH
Q 031170 81 LQKNVDEALKS 91 (164)
Q Consensus 81 ~~~~~~~A~~~ 91 (164)
.-.+|+.|+..
T Consensus 316 ~ydE~DnA~lt 326 (624)
T 3lvg_A 316 KYEEYDNAIIT 326 (624)
T ss_dssp HHTCHHHHHHT
T ss_pred cchhHHHHHHH
Confidence 89999988643
No 351
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=34.14 E-value=61 Score=17.88 Aligned_cols=27 Identities=4% Similarity=-0.095 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 95 (164)
...++.=|.-|+..||+..|+.++.-+
T Consensus 35 A~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 35 IEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555577788888888888877543
No 352
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.38 E-value=59 Score=24.00 Aligned_cols=30 Identities=10% Similarity=-0.100 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
..++-.+|.+++-.|+|++|....++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 456778899999999999999999999865
No 353
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=32.00 E-value=98 Score=21.76 Aligned_cols=32 Identities=9% Similarity=-0.208 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMDRC 42 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 42 (164)
++.|++-.+-.+...|+++...+.++.+.++.
T Consensus 148 FDaALERielGLe~~p~s~~L~la~sKIllqr 179 (393)
T 3msv_A 148 IDAAIERAQLGLDAPGNESRLFLALARAYLEK 179 (393)
T ss_dssp HHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHHHH
Confidence 46677777777788999988888888776643
No 354
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=31.73 E-value=79 Score=19.03 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=9.0
Q ss_pred CCchHHHHHHHHHH
Q 031170 9 GKTQDARNVFEEIL 22 (164)
Q Consensus 9 ~~~~~A~~~~~~~l 22 (164)
++.+++..+++++.
T Consensus 4 ~~~ee~~~wl~~A~ 17 (141)
T 3o10_A 4 GNPVEARRWLRQAR 17 (141)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH
Confidence 55666777766663
No 355
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=31.65 E-value=54 Score=24.18 Aligned_cols=31 Identities=16% Similarity=-0.225 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 28 SFEALFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 28 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
...++-.+|.+++..++|++|....++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3456778999999999999999999999864
No 356
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.23 E-value=1.2e+02 Score=20.20 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=46.5
Q ss_pred HHHHHcCCcHHHHHHHHHHHhhccccchhh--hhhhHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q 031170 37 LLMDRCGEGEAVIKRLEEALEIAEDGNKLK--EARDVR-FIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIY 113 (164)
Q Consensus 37 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 113 (164)
.+++...+|++|+..+++.-+...+..... .+.... .....+-.+..... +.+.+.+.. ...+.........+
T Consensus 26 Dv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~---~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAIS---SKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHH---HHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHH---HHHHHHHHh-cCCHHHHHHHHHHH
Confidence 578889999999999887665543311100 011111 11111221111111 122223333 33344444555667
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 031170 114 SLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 114 ~~~~~~~~A~~~l~~~~~ 131 (164)
.++|+.++|.+.|-++..
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 778999999888876643
No 357
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=31.13 E-value=99 Score=22.89 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.9
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHHHHHh
Q 031170 105 PYFCKGMIYSLLDRNAEAKEEFAKYRQ 131 (164)
Q Consensus 105 ~~~~~~~~~~~~~~~~~A~~~l~~~~~ 131 (164)
++-.++.+|+..+++++|+..+++++.
T Consensus 182 A~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 182 AYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567789999999999999999998875
No 358
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=30.03 E-value=1.6e+02 Score=21.58 Aligned_cols=85 Identities=12% Similarity=-0.044 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhccccchh----------hh------hh-hHHHHHHHHHHHccCHHHHHHHHHH
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIAEDGNKL----------KE------AR-DVRFIMAQIKFLQKNVDEALKSYQE 94 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------~~------~~-~~~~~la~~~~~~~~~~~A~~~~~~ 94 (164)
+..|+..+...++|.||--.+.....+....... .+ .. ..+......+.+-+.|+.|+.+++.
T Consensus 38 l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~ 117 (436)
T 2yin_A 38 LYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKE 117 (436)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3568888999999998877664433333221110 00 01 1222345555566789999999988
Q ss_pred HHHhCCCCchhhhhHHHHHHhc
Q 031170 95 LEIEDPNDFRPYFCKGMIYSLL 116 (164)
Q Consensus 95 ~~~~~p~~~~~~~~~~~~~~~~ 116 (164)
++........-+-.++.++..+
T Consensus 118 L~~~yE~~~~Dy~~Ls~~~~~~ 139 (436)
T 2yin_A 118 LAEQYEMEIFDYELLSQNLIQQ 139 (436)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8776444333344666665543
No 359
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.96 E-value=1.3e+02 Score=19.98 Aligned_cols=83 Identities=8% Similarity=-0.105 Sum_probs=42.9
Q ss_pred hhhhcCCchHHHHHHHHHHhc---CCC-----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhccccchhhhhhhHHHHH
Q 031170 4 LLSEMGKTQDARNVFEEILAG---NPL-----SFEALFENALLMDRCGEGEAVIKRLEEALEIAEDGNKLKEARDVRFIM 75 (164)
Q Consensus 4 ~~~~~~~~~~A~~~~~~~l~~---~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 75 (164)
++....+|++|++..++.-+. .+. +..+...+ ..-+....-.-+. .+.+.+...+. .......
T Consensus 27 v~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l-~~ki~eR~~~L~~-~L~~~l~~~~~-------~~~~r~~ 97 (235)
T 2d2s_A 27 IELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLI-SLKIEQRREAISS-KLSQSILSSNE-------IVHLKSG 97 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHH-HHHHHHHHHHHHH-HHHHHHHTCSS-------HHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHH-HHHHHHHHHHHHH-HHHHHHHhcCC-------HHHHHHH
Confidence 567788999999998876443 221 11111111 1111111111122 22223333222 3344444
Q ss_pred HHHHHHccCHHHHHHHHHHH
Q 031170 76 AQIKFLQKNVDEALKSYQEL 95 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~ 95 (164)
...+.+.|+-++|...|-++
T Consensus 98 v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 98 TENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCChhHHHHHHHHH
Confidence 56777899999999988775
No 360
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=28.81 E-value=32 Score=25.17 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELE 96 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~ 96 (164)
..++..+|++|+-.++|++|+...++++
T Consensus 201 ~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 201 AAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4566788999999999999999998887
No 361
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=28.46 E-value=1.8e+02 Score=21.42 Aligned_cols=61 Identities=13% Similarity=-0.120 Sum_probs=34.2
Q ss_pred CchhhhhcCCchHHHHHHHHHHhcC---CCC-----------H---------HHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 031170 1 MARLLSEMGKTQDARNVFEEILAGN---PLS-----------F---------EALFENALLMDRCGEGEAVIKRLEEALE 57 (164)
Q Consensus 1 la~~~~~~~~~~~A~~~~~~~l~~~---p~~-----------~---------~~~~~la~~~~~~~~~~~A~~~~~~a~~ 57 (164)
|+..+...++|.+|.-++.-...+. +.. + ..+...+..+.+-+.|+.|+.+++.++.
T Consensus 41 L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k~L~~ 120 (436)
T 2yin_A 41 LRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKELAE 120 (436)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4567888899999988874332221 110 0 0122333444455566777777777766
Q ss_pred hccc
Q 031170 58 IAED 61 (164)
Q Consensus 58 ~~~~ 61 (164)
....
T Consensus 121 ~yE~ 124 (436)
T 2yin_A 121 QYEM 124 (436)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 362
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=28.38 E-value=83 Score=17.63 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHHHHHHHHHhh
Q 031170 76 AQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 76 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~ 132 (164)
+..|+..++.+..++.+..+...-...++...-.+.....-.+..+|.+.+++....
T Consensus 17 sr~~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG~~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 17 SRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777665442111222223444444444566677777766554
No 363
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=28.15 E-value=68 Score=21.96 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHh-------CCCCch---hhhhHHHHHHh-cCCHHHHHHHHHHHHhh
Q 031170 85 VDEALKSYQELEIE-------DPNDFR---PYFCKGMIYSL-LDRNAEAKEEFAKYRQL 132 (164)
Q Consensus 85 ~~~A~~~~~~~~~~-------~p~~~~---~~~~~~~~~~~-~~~~~~A~~~l~~~~~~ 132 (164)
.+.|...|+++... .|.+|- ..++.+..|.. +++.++|....++++..
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677777777542 233332 22333444443 89999999999998776
No 364
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=26.90 E-value=1.5e+02 Score=19.93 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=13.3
Q ss_pred hcCCchHHHHHHHHHHhcCCC
Q 031170 7 EMGKTQDARNVFEEILAGNPL 27 (164)
Q Consensus 7 ~~~~~~~A~~~~~~~l~~~p~ 27 (164)
.+++|++|..-|+.+-+.+|.
T Consensus 36 VMkEW~Eae~q~k~l~kaDpk 56 (239)
T 3k66_A 36 VMKEWGDLETRYNEQKAKDPK 56 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhccccCHH
Confidence 345667777777776666654
No 365
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.67 E-value=2e+02 Score=21.41 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=51.5
Q ss_pred HHHHHHHHHcC---CcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCch
Q 031170 33 FENALLMDRCG---EGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIE-----DPNDFR 104 (164)
Q Consensus 33 ~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~ 104 (164)
..+-+++...| +|..|+..+-.+-++.|..+.+ .++..|++++.. ...+.-
T Consensus 246 q~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp---------------------~~~~Lf~~AI~~ar~~Y~~~hvY 304 (489)
T 4gq4_A 246 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRP---------------------DPLTLYHKGIASAKTYYRDEHIY 304 (489)
T ss_dssp HHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSC---------------------CHHHHHHHHHHHHHHHSTTCCSH
T ss_pred HHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCC---------------------CHHHHHHHHHHHHHHhcccCccc
Confidence 34445555554 6778888888888888774322 223344444432 234566
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHHHHH
Q 031170 105 PYFCKGMIYSLLDRNAEAKEEFAKYR 130 (164)
Q Consensus 105 ~~~~~~~~~~~~~~~~~A~~~l~~~~ 130 (164)
++..+|-.+...+++.+|++.+..+-
T Consensus 305 PYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 305 PYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ceeecchHHHHhhhHHHHHHHhhhhh
Confidence 77888999999999999999988773
No 366
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.49 E-value=1.2e+02 Score=18.73 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcC-CCCHH-HHHHHHHHHHH---cCCcHHHHHHHHHHHhhccccchhhhh---hhHHHHHHHHHHHccC
Q 031170 13 DARNVFEEILAGN-PLSFE-ALFENALLMDR---CGEGEAVIKRLEEALEIAEDGNKLKEA---RDVRFIMAQIKFLQKN 84 (164)
Q Consensus 13 ~A~~~~~~~l~~~-p~~~~-~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~la~~~~~~~~ 84 (164)
-+...|+..|... .+||- +|.....-..+ .|. ..-..+++++++...+...-..+ ..+|+..+.. .
T Consensus 8 ~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~-- 81 (152)
T 4a1g_A 8 NVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---N-- 81 (152)
T ss_dssp HHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---B--
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---c--
Confidence 3445677766654 34443 34433221111 232 23456778888876553322222 2333333432 2
Q ss_pred HHHHHHHHHHHHHhCCCCchhh--hhHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 031170 85 VDEALKSYQELEIEDPNDFRPY--FCKGMIYSLLDRNAEAKEEFAKYRQLSPK 135 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~A~~~l~~~~~~~p~ 135 (164)
..+..+|..+....-...-+. ..-|..+...|++++|.++|+..++....
T Consensus 82 -~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 -SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp -SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 337777877766554444444 45566777799999999999999988644
No 367
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.93 E-value=1.1e+02 Score=18.03 Aligned_cols=44 Identities=7% Similarity=-0.080 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 031170 43 GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDP 100 (164)
Q Consensus 43 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 100 (164)
..+++|..++.++|+++.. |.-.....-|.+++..+++.+....
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 3567777777777777643 1111122335566666666666644
No 368
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.21 E-value=1.1e+02 Score=17.74 Aligned_cols=75 Identities=17% Similarity=-0.087 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHHhhccccchhhhhhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHH
Q 031170 43 GEGEAVIKRLEEALEIAEDGNKLKEARDVRFIMAQIKFLQKNVDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEA 122 (164)
Q Consensus 43 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A 122 (164)
...++|..+-+- +...+. ..-+.+........+|+|++|....+... .++..-..+.+-.+.|-.+++
T Consensus 20 H~HqEA~tIAdw-L~~~~~------~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~l 87 (115)
T 2uwj_G 20 HCHEEALCIAEW-LERLGQ------DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAAL 87 (115)
T ss_dssp TCHHHHHHHHHH-HHHTTC------HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHH-HHhCCc------HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHH
Confidence 345666655444 333333 13344445556777888888876554321 344444566677778888888
Q ss_pred HHHHHHH
Q 031170 123 KEEFAKY 129 (164)
Q Consensus 123 ~~~l~~~ 129 (164)
...+...
T Consensus 88 e~rL~~l 94 (115)
T 2uwj_G 88 DRRLAGL 94 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777433
No 369
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=24.99 E-value=1.8e+02 Score=21.91 Aligned_cols=30 Identities=13% Similarity=-0.053 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 031170 29 FEALFENALLMDRCGEGEAVIKRLEEALEI 58 (164)
Q Consensus 29 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 58 (164)
..++-.+|.+++..++|++|....++++..
T Consensus 198 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 198 QAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 456778899999999999999999999874
No 370
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.94 E-value=2.5e+02 Score=22.03 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred chhhhhcCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------------CcHHHHHHHHHHHhhc-----ccc
Q 031170 2 ARLLSEMGKTQDARNVFEEILAGNPLSFEALFENALLMDRCG--------------EGEAVIKRLEEALEIA-----EDG 62 (164)
Q Consensus 2 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--------------~~~~A~~~~~~a~~~~-----~~~ 62 (164)
|......|++++|+.+|.-+-+.+---.-.-..++.+..... +...-...+.+....+ .-.
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Q ss_pred chhhhhhhHHHHHHHHH--HHccCHHHHHHHHHH
Q 031170 63 NKLKEARDVRFIMAQIK--FLQKNVDEALKSYQE 94 (164)
Q Consensus 63 ~~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~ 94 (164)
......-..+..+..++ +..|+|+.|+..+++
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 371
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.81 E-value=84 Score=20.10 Aligned_cols=28 Identities=14% Similarity=-0.085 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 031170 32 LFENALLMDRCGEGEAVIKRLEEALEIA 59 (164)
Q Consensus 32 ~~~la~~~~~~~~~~~A~~~~~~a~~~~ 59 (164)
......-+.+.|+|++|..++.+.....
T Consensus 35 kLqvI~GLlql~~ydea~~yI~~~~~~~ 62 (192)
T 1ixm_A 35 KLQLIKGNLSLQKYDRVFEMIEEMVIDA 62 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3334455678999999999998876644
No 372
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=24.62 E-value=1.1e+02 Score=17.59 Aligned_cols=28 Identities=11% Similarity=-0.057 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELE 96 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~ 96 (164)
.+....-|.-..+.|+|++|.+.++++-
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444555666667778887777776653
No 373
>3jq0_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482}
Probab=24.24 E-value=1.1e+02 Score=22.64 Aligned_cols=29 Identities=3% Similarity=0.146 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHcc--------CHHHHHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQK--------NVDEALKSYQELEI 97 (164)
Q Consensus 69 ~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~ 97 (164)
..++..+|++|+-.+ +|++|+...++++.
T Consensus 183 ~aA~allArvyL~~~~~~~~~~~~~~~A~~~a~~vi~ 219 (493)
T 3jq0_A 183 AATQMLKGEAYLWSGRQMNGGNSDYTIAKNAFENVKK 219 (493)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHh
Confidence 456667788887665 68888888888875
No 374
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.37 E-value=1.1e+02 Score=17.42 Aligned_cols=28 Identities=11% Similarity=-0.107 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHH
Q 031170 69 RDVRFIMAQIKFLQKNVDEALKSYQELE 96 (164)
Q Consensus 69 ~~~~~~la~~~~~~~~~~~A~~~~~~~~ 96 (164)
.+....-|.-..+.|+|++|.+.++++-
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444555666667778887777776653
No 375
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=23.24 E-value=1.1e+02 Score=17.16 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhHHHHHHhcCCHHHHH
Q 031170 85 VDEALKSYQELEIEDPNDFRPYFCKGMIYSLLDRNAEAK 123 (164)
Q Consensus 85 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~A~ 123 (164)
...+++...+.++.+|.++. .++.+....++|.-.+
T Consensus 32 ~~~~l~~Al~~L~~~psNPa---~LAe~Qa~lseynl~R 67 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPT---ALANYQMIMSEYNLYR 67 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHHH
Confidence 33444444455556777776 5555555555554433
No 376
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=22.99 E-value=1.1e+02 Score=21.13 Aligned_cols=30 Identities=10% Similarity=-0.196 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 031170 11 TQDARNVFEEILAGNPLSFEALFENALLMD 40 (164)
Q Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 40 (164)
++.|++-.+-.+...|+++...+.++.+.+
T Consensus 101 FDaALERielGLe~~p~s~~L~la~SKILl 130 (346)
T 3qtm_A 101 IDAAIERAQLGLDAPGNESRLFLALARAYL 130 (346)
T ss_dssp HHHHHHHHHHGGGSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhCCCChhHHHHHHHHHH
Confidence 467777777888889999988777776654
Done!