BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031172
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L0Y|A Chain A, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
pdb|1L0Y|C Chain C, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
Length = 236
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 25 ISPTEIKSFEPKTVQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDD 84
++P ++ FEP ++A K + V C ++ + D + L++ G EV+ D
Sbjct: 118 VTPPKVSLFEPSKAEIANKQKATLV-----CLARGFFPDHVELSWW-VNGKEVHSGVSTD 171
Query: 85 PYS---RTFESCSTDTFQISG-----PCTYDICY-QYLLRSGSDGWKPESVKICGQNI 133
P + + C + ++S P + C Q+ S D W S K QNI
Sbjct: 172 PQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNI 229
>pdb|1JCK|A Chain A, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|C Chain C, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1SBB|A Chain A, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SBB|C Chain C, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1L0X|A Chain A, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1L0X|C Chain C, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1BEC|A Chain A, Beta Chain Of A T Cell Antigen Receptor
Length = 238
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 25 ISPTEIKSFEPKTVQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDD 84
++P ++ FEP ++A K + V C ++ + D + L++ G EV+ D
Sbjct: 118 VTPPKVSLFEPSKAEIANKQKATLV-----CLARGFFPDHVELSWW-VNGKEVHSGVSTD 171
Query: 85 PYS---RTFESCSTDTFQISG-----PCTYDICY-QYLLRSGSDGWKPESVKICGQNI 133
P + + C + ++S P + C Q+ S D W S K QNI
Sbjct: 172 PQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNI 229
>pdb|2Q86|B Chain B, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|D Chain D, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 254
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 25 ISPTEIKSFEPKTVQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDD 84
++P ++ FEP ++A K + V C ++ + D + L++ G EV+ D
Sbjct: 116 VTPPKVSLFEPSKAEIANKQKATLV-----CLARGFFPDHVELSWW-VNGKEVHSGVCTD 169
Query: 85 PYS---RTFESCSTDTFQISG-----PCTYDICY-QYLLRSGSDGWKPESVKICGQNI 133
P + + C + ++S P + C Q+ S D W S K QNI
Sbjct: 170 PQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNI 227
>pdb|1TCR|B Chain B, Murine T-Cell Antigen Receptor 2c Clone
pdb|2CKB|B Chain B, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|D Chain D, Structure Of The 2cKBDEV8 COMPLEX
pdb|1G6R|B Chain B, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|D Chain D, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1MWA|B Chain B, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|D Chain D, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 237
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 25 ISPTEIKSFEPKTVQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDD 84
++P ++ FEP ++A K + V C ++ + D + L++ G EV+ D
Sbjct: 116 VTPPKVSLFEPSKAEIANKQKATLV-----CLARGFFPDHVELSWW-VNGKEVHSGVSTD 169
Query: 85 PYS---RTFESCSTDTFQISG-----PCTYDICY-QYLLRSGSDGWKPESVKICGQNI 133
P + + C + ++S P + C Q+ S D W S K QNI
Sbjct: 170 PQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNI 227
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 47 YTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTY 106
Y + ++T + T +S+ G E LD + FES TDT+ SG
Sbjct: 22 YKITVETGDLRGAGTDASVSIKLTGKDGAETSAFSLDKYFHNDFESGGTDTYDQSGVDVG 81
Query: 107 DICYQYLLRSGSDGWKPE--SVKICGQNIRTVTFFYNTFI 144
+I L +G G K + K+ + I T F N +I
Sbjct: 82 EIAMITLKENGF-GLKSDWYIAKVIIEKIDEATGFSNKYI 120
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 124 ESVKICGQNIRTVTFFYNTFIPDGVWFGFN 153
E V + GQ + T+ FF T G W+G
Sbjct: 15 ERVLVVGQRLGTIRFFGTTNFAPGYWYGIE 44
>pdb|2QU7|A Chain A, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
pdb|2QU7|B Chain B, Crystal Structure Of A Putative Transcription Regulator
From Staphylococcus Saprophyticus Subsp. Saprophyticus
Length = 288
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 56 SSKSYTRDKISLAFGDAYGNEVYIKRL 82
S K +D I + F D+Y NE+Y +L
Sbjct: 209 SEKEIKKDVIIVGFDDSYWNEIYTPKL 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,548,650
Number of Sequences: 62578
Number of extensions: 175836
Number of successful extensions: 324
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)