BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031172
         (164 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O66411|YZ20_AQUAE Uncharacterized protein aq_aa20 OS=Aquifex aeolicus (strain VF5)
           GN=aq_aa20 PE=4 SV=1
          Length = 318

 Score = 32.0 bits (71), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 19  HAGSSIISPTEIKSFEPKTVQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVY 78
           + G SI  P E+K F  KT ++A  S S+ + I  +  S    +        D Y     
Sbjct: 130 YEGKSIYDPVEVKEFIKKTRKLARNSESHIMFIHHTIKSSGKNK-------TDRYQGVST 182

Query: 79  IKRLDDPY------SRTFESCSTDTFQISGPCTYDICYQYLLRSGSDGW 121
           IK L  P+       ++F   + +    + P  ++  Y Y+ ++G+  W
Sbjct: 183 IKFLTTPFMQAYTEGKSFRVLTIEKHNFAYP--FEKIYYYINKNGAITW 229


>sp|Q7ZVM9|RMI1_DANRE RecQ-mediated genome instability protein 1 OS=Danio rerio GN=rmi1
           PE=2 SV=1
          Length = 519

 Score = 30.8 bits (68), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 63  DKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGSDGWK 122
           +++S       GN    + L+   + +  SCST T   S  C     Y   L++G   W 
Sbjct: 337 EEVSFPSRSRLGNTYQSRTLNKVPNTSLASCSTSTLD-SSACKETPMYLCSLQAGC--WP 393

Query: 123 PESVKICGQNIRTVTFFYNTFIPDGVW 149
           P+S ++       VT   N  I  GVW
Sbjct: 394 PKSPQVFRLQAFIVTLVGNLRISGGVW 420


>sp|Q971U9|RIFK_SULTO Riboflavin kinase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
           10545 / NBRC 100140 / 7) GN=ribK PE=3 SV=1
          Length = 136

 Score = 30.0 bits (66), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 27  PTEIKSFEPKTVQVAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYI 79
           P+ I S  P  + + A++     +I+    S  Y R+K+SL  GD    EVY+
Sbjct: 86  PSSINSISPAAIVIPARTTHPKSVIE--IISPYYLREKLSLKDGDEVEIEVYL 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,453,804
Number of Sequences: 539616
Number of extensions: 2211143
Number of successful extensions: 4601
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4601
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)