Query 031172
Match_columns 164
No_of_seqs 102 out of 277
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 10:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06232 ATS3: Embryo-specific 100.0 8.8E-40 1.9E-44 249.9 13.5 122 34-155 2-125 (125)
2 cd01754 PLAT_plant_stress PLAT 100.0 4.1E-33 9E-38 214.4 13.1 102 45-147 1-117 (129)
3 cd01753 PLAT_LOX PLAT domain o 100.0 7.1E-31 1.5E-35 196.9 12.7 102 46-149 2-107 (113)
4 cd01756 PLAT_repeat PLAT/LH2 d 100.0 4.5E-30 9.8E-35 193.2 13.4 102 46-148 2-108 (120)
5 cd01752 PLAT_polycystin PLAT/L 100.0 4.5E-30 9.7E-35 193.4 13.0 102 45-147 1-107 (120)
6 cd02899 PLAT_SR Scavenger rece 100.0 1E-29 2.2E-34 190.7 12.1 97 46-147 2-99 (109)
7 cd00113 PLAT PLAT (Polycystin- 100.0 3.9E-29 8.5E-34 184.8 13.6 109 45-155 1-114 (116)
8 cd01757 PLAT_RAB6IP1 PLAT/LH2 99.9 7.6E-27 1.6E-31 176.4 12.1 94 46-149 2-100 (114)
9 smart00308 LH2 Lipoxygenase ho 99.9 7.2E-26 1.6E-30 164.9 13.1 100 46-146 2-104 (105)
10 PF01477 PLAT: PLAT/LH2 domain 99.9 6.9E-25 1.5E-29 159.9 8.3 101 47-150 1-106 (113)
11 cd01755 PLAT_lipase PLAT/ LH2 99.7 1.4E-15 2.9E-20 115.1 11.3 90 45-138 1-102 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 99.4 1.7E-12 3.8E-17 100.8 11.1 91 45-138 1-116 (137)
13 KOG2080 Uncharacterized conser 98.7 1.4E-08 2.9E-13 97.6 5.1 92 44-147 973-1068(1295)
14 cd01759 PLAT_PL PLAT/LH2 domai 98.0 9.4E-05 2E-09 56.0 10.4 90 46-142 2-99 (113)
15 TIGR03230 lipo_lipase lipoprot 97.4 0.0016 3.4E-08 59.5 10.3 95 40-138 304-412 (442)
16 cd01751 PLAT_LH2 PLAT/ LH2 dom 82.6 5.9 0.00013 30.9 6.6 52 96-147 70-125 (137)
17 PF07172 GRP: Glycine rich pro 57.3 8.1 0.00018 28.3 1.9 21 4-24 6-26 (95)
18 PLN02264 lipoxygenase 52.5 64 0.0014 32.6 7.7 52 97-148 159-213 (919)
19 PLN02337 lipoxygenase 44.6 64 0.0014 32.4 6.4 52 97-148 96-151 (866)
20 PLN02305 lipoxygenase 43.1 69 0.0015 32.4 6.4 55 96-150 154-211 (918)
21 CHL00038 psbL photosystem II p 39.4 22 0.00047 22.1 1.5 15 5-19 20-34 (38)
22 PRK00753 psbL photosystem II r 37.0 26 0.00056 21.8 1.6 15 5-19 21-35 (39)
23 COG4549 Uncharacterized protei 36.2 59 0.0013 26.6 4.0 100 41-146 34-143 (178)
24 PRK10936 TMAO reductase system 30.7 35 0.00076 29.1 2.0 10 1-10 1-10 (343)
25 PF14869 DUF4488: Domain of un 26.5 2.5E+02 0.0055 22.0 5.9 54 78-132 65-125 (133)
26 PF08139 LPAM_1: Prokaryotic m 25.0 56 0.0012 18.5 1.5 15 1-15 6-20 (25)
27 PF11974 MG1: Alpha-2-macroglo 24.2 2.6E+02 0.0056 20.0 5.3 67 50-117 16-84 (97)
28 PF02419 PsbL: PsbL protein; 23.2 69 0.0015 19.8 1.8 15 5-19 19-33 (37)
29 PRK10781 rcsF outer membrane l 22.3 1.6E+02 0.0034 23.1 4.0 31 44-74 44-74 (133)
30 PF11153 DUF2931: Protein of u 21.5 92 0.002 25.3 2.8 14 1-14 1-14 (216)
31 smart00112 CA Cadherin repeats 20.1 2.2E+02 0.0048 18.4 4.0 31 45-75 45-77 (79)
No 1
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=100.00 E-value=8.8e-40 Score=249.94 Aligned_cols=122 Identities=66% Similarity=1.201 Sum_probs=115.4
Q ss_pred CCcccc-ccccCeeEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCC-CcccCCCcceeEeecCCCCCeEEE
Q 031172 34 EPKTVQ-VAAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYS-RTFESCSTDTFQISGPCTYDICYQ 111 (164)
Q Consensus 34 ~~~~~~-~~~~~~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~-~~FErGsvD~F~v~~~~lG~i~~l 111 (164)
++.+.+ .+.+.|+|+|+|+|||.++|||+|+|+|+|++++|+++...+||+|.+ ++||||++|+|+++++|+++||+|
T Consensus 2 ~~~~~~~~~~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~p~~~~~FErCs~DtF~v~G~C~~~IC~l 81 (125)
T PF06232_consen 2 QQINETEQQAGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDDPGSGDTFERCSTDTFQVTGPCLYQICYL 81 (125)
T ss_pred cccchhhhcCCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCCCCccCchhcCCcceeEeecccCCcccEE
Confidence 344454 467779999999999999999999999999999999999999999987 999999999999999999999999
Q ss_pred EEEEcCCCCceeeEEEEEeCCCCeEEEEcCeecCCCceeeecCC
Q 031172 112 YLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDGVWFGFNQC 155 (164)
Q Consensus 112 ~L~hdG~d~W~~e~V~V~~~~~~~~~F~cnrWL~~~~~~~~~~C 155 (164)
+|+|+|.|||+|+||+|+....++.+|++|+||++|+|||+|+|
T Consensus 82 yL~r~G~dGW~Pe~V~Iy~~~~~~~~F~~~~~lp~~vwyG~n~C 125 (125)
T PF06232_consen 82 YLYRSGSDGWKPEWVQIYGSGSKPVTFYFNTFLPNGVWYGFNYC 125 (125)
T ss_pred EEEEccCCCCEeCeEEEEEcCCCCeEEECCCcCCCCCcccccCC
Confidence 99999999999999999999889999999999999999999999
No 2
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=4.1e-33 Score=214.36 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=89.7
Q ss_pred eeEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCC-------CcCCCcccCCCcceeEeecCC-CCCeEEEEEEEc
Q 031172 45 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLD-------DPYSRTFESCSTDTFQISGPC-TYDICYQYLLRS 116 (164)
Q Consensus 45 ~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld-------~~~~~~FErGsvD~F~v~~~~-lG~i~~l~L~hd 116 (164)
|.|+|+|+||++++|||||+|+|+|+|++|++ ....|. ++.++.||||++|+|.|+.++ +|+|++|+||||
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s-~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HD 79 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPG-LRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSD 79 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCc-ccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEEC
Confidence 78999999999999999999999999999975 555553 355789999999999999865 599999999999
Q ss_pred CC--C-CceeeEEEEEeC-C---CCeEEEEcCeecCCC
Q 031172 117 GS--D-GWKPESVKICGQ-N---IRTVTFFYNTFIPDG 147 (164)
Q Consensus 117 G~--d-~W~~e~V~V~~~-~---~~~~~F~cnrWL~~~ 147 (164)
++ + +|||++|+|++. + ++.++|||||||+.+
T Consensus 80 n~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d 117 (129)
T cd01754 80 GTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATD 117 (129)
T ss_pred CCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCC
Confidence 54 3 999999999986 3 458999999999977
No 3
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=99.97 E-value=7.1e-31 Score=196.95 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=92.8
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeec-CCCCCeEEEEEEEcCC--C-Cc
Q 031172 46 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSGS--D-GW 121 (164)
Q Consensus 46 ~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~-~~lG~i~~l~L~hdG~--d-~W 121 (164)
.|+|+|+||++++|||+|+|+|+|+|++|+ +....|+++.+ +||||++|+|.+.. .++|+|++|+||||+. + +|
T Consensus 2 ~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~-S~~~~L~~~~~-~FerG~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W 79 (113)
T cd01753 2 EYKVTVATGSSLFAGTDDYIYLTLVGTAGE-SEKQLLDRPGY-DFERGAVDEYKVKVPEDLGELLLVRLRKRKYLLFDAW 79 (113)
T ss_pred EEEEEEEECCCcCCccccEEEEEEEECCCc-ccCEEcCCCCC-ccCCCCeeEEEEecccCCCCcEEEEEEECCCCCCCCe
Confidence 699999999999999999999999999997 57888988775 59999999999987 5679999999999953 3 99
Q ss_pred eeeEEEEEeCCCCeEEEEcCeecCCCce
Q 031172 122 KPESVKICGQNIRTVTFFYNTFIPDGVW 149 (164)
Q Consensus 122 ~~e~V~V~~~~~~~~~F~cnrWL~~~~~ 149 (164)
||++|+|+++.++.+.|||||||+++.-
T Consensus 80 ~l~~V~V~~~~~~~~~F~c~rWl~~~~~ 107 (113)
T cd01753 80 FCNYITVTGPGGDEYHFPCYRWIEGYGT 107 (113)
T ss_pred eecEEEEEcCCCCEEEEEhHHeECCCCE
Confidence 9999999988899999999999998743
No 4
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=4.5e-30 Score=193.23 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=94.3
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCc-CCCcccCCCcceeEeecCCCCCeEEEEEEEcCC---CCc
Q 031172 46 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDP-YSRTFESCSTDTFQISGPCTYDICYQYLLRSGS---DGW 121 (164)
Q Consensus 46 ~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~-~~~~FErGsvD~F~v~~~~lG~i~~l~L~hdG~---d~W 121 (164)
.|+|+|+||+.++|||+|+|+|+|+|++|+ +....|+++ .+++||||++|+|.+...++|+|.+|+||||+. ++|
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~-s~~~~L~~~~~~~~FerGs~d~F~i~~~~lG~l~~i~i~~d~~g~~~~W 80 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGD-TGKRKLKKSNNKNKFERGQTDKFTVEAVDLGKLKKIRIGHDNSGLGAGW 80 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCc-cccEEccCCCcCCcccCCCeEEEEEEecCCCCeEEEEEEECCCCCCCCc
Confidence 699999999999999999999999999996 578889886 678999999999999888889999999999954 399
Q ss_pred eeeEEEEEeC-CCCeEEEEcCeecCCCc
Q 031172 122 KPESVKICGQ-NIRTVTFFYNTFIPDGV 148 (164)
Q Consensus 122 ~~e~V~V~~~-~~~~~~F~cnrWL~~~~ 148 (164)
||++|+|+++ +++.+.|||||||+.+.
T Consensus 81 ~~~~V~V~~~~~~~~~~F~~~~Wl~~~~ 108 (120)
T cd01756 81 FLDKVEIREPGTGDEYTFPCNRWLDKDE 108 (120)
T ss_pred EEeEEEEEECCCceEEEEEeCCccCCCC
Confidence 9999999988 78999999999999874
No 5
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=99.97 E-value=4.5e-30 Score=193.44 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=93.7
Q ss_pred eeEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeec-CCCCCeEEEEEEEcCC--C-C
Q 031172 45 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSGS--D-G 120 (164)
Q Consensus 45 ~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~-~~lG~i~~l~L~hdG~--d-~ 120 (164)
+.|+|+|+||+.++|||+|+|+|+|+|++|+ +....|+++.+++||||++|+|.+.. .++|+|++|+||||+. + +
T Consensus 1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~-s~~~~L~~~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~ 79 (120)
T cd01752 1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGE-SEPHHLRDPEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDNSGLSPS 79 (120)
T ss_pred CEEEEEEEECCCCCCCcccEEEEEEEeCCCC-cccEEcCCCCccceeCCCeeEEEecCccCCCCccEEEEEECCCCCCCC
Confidence 4799999999999999999999999999997 57788988887899999999999986 5779999999999954 3 9
Q ss_pred ceeeEEEEEeC-CCCeEEEEcCeecCCC
Q 031172 121 WKPESVKICGQ-NIRTVTFFYNTFIPDG 147 (164)
Q Consensus 121 W~~e~V~V~~~-~~~~~~F~cnrWL~~~ 147 (164)
|||++|+|+++ +++.+.|||+|||+.+
T Consensus 80 W~l~~V~V~~~~t~~~~~F~~~rWl~~~ 107 (120)
T cd01752 80 WYLSRVIVRDLQTGKKWFFLCNDWLSVE 107 (120)
T ss_pred eEEEEEEEEECCCCcEEEEEeCcEECCc
Confidence 99999999988 7899999999999976
No 6
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.96 E-value=1e-29 Score=190.65 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=89.3
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEEEEcCCC-Cceee
Q 031172 46 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGSD-GWKPE 124 (164)
Q Consensus 46 ~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~~~lG~i~~l~L~hdG~d-~W~~e 124 (164)
.|+|+|+||+.++|||+++|+|+|+|++|. +....|++ +||||++|+|.|+..++|+|.+|+|+++|.+ +|||+
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~-S~~~~L~~----~F~~G~~d~F~v~~~dLG~l~~i~l~n~g~~~~Wf~~ 76 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGR-SNPKTLSQ----GFYPGSLKRIRFRAADVGDINAIILSNTALNDPWYCD 76 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCC-cCCEEccC----ccCCCceEEEEECccccCceEEEEEECCCCCCCceee
Confidence 699999999999999999999999999996 56777764 6999999999999888899999999888864 99999
Q ss_pred EEEEEeCCCCeEEEEcCeecCCC
Q 031172 125 SVKICGQNIRTVTFFYNTFIPDG 147 (164)
Q Consensus 125 ~V~V~~~~~~~~~F~cnrWL~~~ 147 (164)
+|+|++++++.+.|||||||+..
T Consensus 77 ~V~V~~~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 77 YVRIKSEDGKVFAFNVKRWIGYP 99 (109)
T ss_pred EEEEECCCCCEEEEEcceeeCCc
Confidence 99999998899999999999964
No 7
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.96 E-value=3.9e-29 Score=184.82 Aligned_cols=109 Identities=37% Similarity=0.456 Sum_probs=95.8
Q ss_pred eeEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeecC-CCCCeEEEEEEEcCCC---C
Q 031172 45 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGP-CTYDICYQYLLRSGSD---G 120 (164)
Q Consensus 45 ~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~~-~lG~i~~l~L~hdG~d---~ 120 (164)
|.|+|+|+||+..+|||+++|+|.|+|++|++. ...|.+.... ||||++|+|.+..+ ++|+|+.|+|+||+.+ +
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~-~~~l~~~~~~-f~~g~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~ 78 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSS-DIPILDGPGS-FERGSTDTFQIDLKLDIGDITKVYLRRDGSGLSDG 78 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcc-cEEccCCCCc-ccCCCceEEEEeccCCCcCeEEEEEEECCCCCCCC
Confidence 689999999999999999999999999999864 4555443323 99999999999887 7799999999999764 9
Q ss_pred ceeeEEEEEeC-CCCeEEEEcCeecCCCceeeecCC
Q 031172 121 WKPESVKICGQ-NIRTVTFFYNTFIPDGVWFGFNQC 155 (164)
Q Consensus 121 W~~e~V~V~~~-~~~~~~F~cnrWL~~~~~~~~~~C 155 (164)
|||++|+|+++ +++.+.|+|++||+.+.++..+.|
T Consensus 79 W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~ 114 (116)
T cd00113 79 WYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRS 114 (116)
T ss_pred EEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceee
Confidence 99999999987 679999999999999988877665
No 8
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=99.94 E-value=7.6e-27 Score=176.37 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=81.5
Q ss_pred eEEEEEEcCCC-CCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEEEEcCC--C-Cc
Q 031172 46 SYTVIIKTSCS-SKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGS--D-GW 121 (164)
Q Consensus 46 ~Y~V~V~TG~~-~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~~~lG~i~~l~L~hdG~--d-~W 121 (164)
.|+|+|+||.. ++|||+|||+|+|+|++|+ +.++.|++. .| .|.+...++|+|.+|+||||++ + +|
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~-s~~~~L~~~---~f------~~~v~~~~LG~L~~irIwHDnsG~~~~W 71 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGE-TPPLQIPKN---SL------EMTFDCQNLGKLTTVQIGHDNSGLLAKW 71 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCC-cCCEEecCC---ce------EEEEecCCcCCcEEEEEEECCCCCCCCe
Confidence 69999999999 5999999999999999996 577888632 23 5777778899999999999943 3 99
Q ss_pred eeeEEEEEeC-CCCeEEEEcCeecCCCce
Q 031172 122 KPESVKICGQ-NIRTVTFFYNTFIPDGVW 149 (164)
Q Consensus 122 ~~e~V~V~~~-~~~~~~F~cnrWL~~~~~ 149 (164)
||++|+|+++ +++.|+|||||||+.+..
T Consensus 72 fl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 72 LVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred eeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 9999999985 899999999999997744
No 9
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.94 E-value=7.2e-26 Score=164.94 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=87.5
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeecC-CCCCeEEEEEEEcC-CCCcee
Q 031172 46 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGP-CTYDICYQYLLRSG-SDGWKP 123 (164)
Q Consensus 46 ~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~~-~lG~i~~l~L~hdG-~d~W~~ 123 (164)
.|+|+|.||...+|||+|+|+|+|+|++|++ ....+....+..||||++++|.+..+ ++|+|..|+||||+ ..+|||
T Consensus 2 ~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s-~~~~~~~~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l 80 (105)
T smart00308 2 KYKVTVTTGGLDFAGTTASVSLSLVGAEGDG-KESKLDYLFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFL 80 (105)
T ss_pred EEEEEEEECCccCCCccceEEEEEEeCCCCC-cceeccccCCccccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEE
Confidence 6999999999999999999999999999752 34444444445699999999999874 67999999999998 579999
Q ss_pred eEEEEEeC-CCCeEEEEcCeecCC
Q 031172 124 ESVKICGQ-NIRTVTFFYNTFIPD 146 (164)
Q Consensus 124 e~V~V~~~-~~~~~~F~cnrWL~~ 146 (164)
++|+|.++ +++.+.|+||+||+.
T Consensus 81 ~~V~V~~~~~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 81 KSITVKDLPTGGKYHFPCNSWVYP 104 (105)
T ss_pred EEEEEEECCCCCEEEEEcCceeCC
Confidence 99999986 889999999999975
No 10
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.92 E-value=6.9e-25 Score=159.86 Aligned_cols=101 Identities=27% Similarity=0.281 Sum_probs=86.8
Q ss_pred EEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeec-CCCCCeEEEEEEEcCC---CCce
Q 031172 47 YTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISG-PCTYDICYQYLLRSGS---DGWK 122 (164)
Q Consensus 47 Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~-~~lG~i~~l~L~hdG~---d~W~ 122 (164)
|+|+|+||+..+|||+|+|+|.|+|++|++ ....|.++....+ |++|+|.+.. .++|+|.+|+|+|++. ++||
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s-~~~~l~~~~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~ 77 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKS-GEIELLDPSGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWY 77 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEE-EEEEEEEEEETST--TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEE
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCc-ceEEEeeeeeccc--CceEEeeeeecccCCCCcEEEEEEccCCCccceE
Confidence 999999999999999999999999999975 5555554432333 9999999988 5679999999999943 4999
Q ss_pred eeEEEEEeC-CCCeEEEEcCeecCCCcee
Q 031172 123 PESVKICGQ-NIRTVTFFYNTFIPDGVWF 150 (164)
Q Consensus 123 ~e~V~V~~~-~~~~~~F~cnrWL~~~~~~ 150 (164)
|++|+|.++ +++.+.|+||+||..+..+
T Consensus 78 l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~ 106 (113)
T PF01477_consen 78 LDSVVVTDGETGRTYTFPCNRWLDPDKDY 106 (113)
T ss_dssp EEEEEEEETTTSEEEEEEEEEEESTTEGC
T ss_pred EEEEEEEeCCCCcEEEEEcCCEECCCCCC
Confidence 999999986 8899999999999987543
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.66 E-value=1.4e-15 Score=115.14 Aligned_cols=90 Identities=12% Similarity=0.066 Sum_probs=77.7
Q ss_pred eeEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEEEEcC----C-
Q 031172 45 CSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYLLRSG----S- 118 (164)
Q Consensus 45 ~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~-~~~lG~i~~l~L~hdG----~- 118 (164)
+.|+|+|.||...+|||+++|+|+|+|++|+ +....|.++ .|++|++++|.+. ..++|+|.+|++|||+ .
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~-s~~~~l~~~---~~~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~ 76 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGE-TEQLPIVLG---ELKPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSN 76 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCC-cccEEEeCC---cccCCCEEEEEEEcCCCccceEEEEEEEcCCCcccc
Confidence 4699999999999999999999999999997 467777643 4799999999995 5778999999999993 2
Q ss_pred ----C-CceeeEEEEEeC-CCCeEEE
Q 031172 119 ----D-GWKPESVKICGQ-NIRTVTF 138 (164)
Q Consensus 119 ----d-~W~~e~V~V~~~-~~~~~~F 138 (164)
. .|++++|.|++. +++++.|
T Consensus 77 ~~~~~p~~~~~~I~Vq~get~~~~~F 102 (120)
T cd01755 77 SGETLPKLGARKIRVKSGETQKKFTF 102 (120)
T ss_pred cccCCCcEEEEEEEEEECCCCCEEEE
Confidence 3 999999999987 6666666
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.43 E-value=1.7e-12 Score=100.84 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=75.1
Q ss_pred eeEEEEEEcCCCCCCc-CceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEE-EEcCC--C
Q 031172 45 CSYTVIIKTSCSSKSY-TRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYL-LRSGS--D 119 (164)
Q Consensus 45 ~~Y~V~V~TG~~~~AG-Tda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~-~~~lG~i~~l~L-~hdG~--d 119 (164)
+.|+|+|.|+....|| |+++|+|+|+|.+|+ +....|..+ ..+++|++++|.|. ..++|+|.+|++ |||.. .
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~-S~~~~l~~~--~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~~n~~~~ 77 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGE-SENLPLTLP--EGITGNKTNSFLITTEKDIGDLLMLKLKWEGSSLWS 77 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCc-ccCEEEecC--cccCCCCeEEEEEECCCCcCCEEEEEEEEeCCCCCC
Confidence 4799999999999999 999999999999997 467777654 34699999999995 577899999999 99843 2
Q ss_pred -Cce------------------eeEEEEEeC-CCCeEEE
Q 031172 120 -GWK------------------PESVKICGQ-NIRTVTF 138 (164)
Q Consensus 120 -~W~------------------~e~V~V~~~-~~~~~~F 138 (164)
+|+ .++|.|+.. +.+++.|
T Consensus 78 ~sW~~~~~~~~~~~~~~~p~l~~~~I~Vk~GEtq~~~~F 116 (137)
T cd01758 78 NSWWTVQTIIPWSGWWRGSGLTIRKIRVKAGETQKKMTF 116 (137)
T ss_pred hhhhccccccccccccCCCeEEEEEEEEEeCCCccEEEE
Confidence 774 678888866 5556666
No 13
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=98.71 E-value=1.4e-08 Score=97.57 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=79.1
Q ss_pred CeeEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEEEEcCC--C-C
Q 031172 44 SCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGS--D-G 120 (164)
Q Consensus 44 ~~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~~~lG~i~~l~L~hdG~--d-~ 120 (164)
.-.|.|.|.|| .+.|+.++|-|.+-|+-+. +...-|+ . ++-.|++....+|-+.-|||.||.+ . -
T Consensus 973 k~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~e-T~~i~~~--~-------n~~~f~F~~kNLG~LtT~rIGHdnS~~~~k 1040 (1295)
T KOG2080|consen 973 KMDYQVVIVTG--SGRGAIPAIWVTVEGSLCS-TPPIMLK--P-------NTPLFKFDHKNLGILSTLRIGHQQSEKPVQ 1040 (1295)
T ss_pred ccceEEEEEeC--CCCcccCceEEEEecccCC-CCceeeC--C-------CCceeEEeccccceeeeEEecccCCCcchH
Confidence 34599999999 7899999999999999985 4554442 1 4567889999999999999999954 3 9
Q ss_pred ceeeEEEEEeC-CCCeEEEEcCeecCCC
Q 031172 121 WKPESVKICGQ-NIRTVTFFYNTFIPDG 147 (164)
Q Consensus 121 W~~e~V~V~~~-~~~~~~F~cnrWL~~~ 147 (164)
|++|+|.|.+. +|++|.|||.||+..|
T Consensus 1041 W~vEyV~vRNEiTG~TYKFPCGrw~G~g 1068 (1295)
T KOG2080|consen 1041 WFLEYVLVRNEITGQTYKFPCGRWFGNG 1068 (1295)
T ss_pred HHHHHhhhhceeccceeccccccccCCc
Confidence 99999999987 9999999999999877
No 14
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=98.01 E-value=9.4e-05 Score=55.96 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=68.5
Q ss_pred eEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEEEEcCCC-C--c
Q 031172 46 SYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYLLRSGSD-G--W 121 (164)
Q Consensus 46 ~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~-~~~lG~i~~l~L~hdG~d-~--W 121 (164)
.|+|+|.-+.... ++..++|.|+|.+|++ ....+. ...|+.|++.+|.+. ..++|+|..|+++.++.- + |
T Consensus 2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s-~~~~i~---~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~ 75 (113)
T cd01759 2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNT-RQYEIF---KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNNVINITL 75 (113)
T ss_pred eEEEEEEEecccc--cCceEEEEEEcCCCCc-cceEEE---eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCCccCCCC
Confidence 5999998776544 8899999999999984 555553 246999999999995 567799999999998641 1 2
Q ss_pred ---eeeEEEEEeC-CCCeEEEEcCe
Q 031172 122 ---KPESVKICGQ-NIRTVTFFYNT 142 (164)
Q Consensus 122 ---~~e~V~V~~~-~~~~~~F~cnr 142 (164)
+.++|.|+.. +++.+.| |.+
T Consensus 76 p~~~~~~I~Vq~Ge~~~~~~F-C~~ 99 (113)
T cd01759 76 PKVGAEKITVQSGKDGKVFNF-CSS 99 (113)
T ss_pred CeEEEEEEEEEeCCCccEEEE-CCC
Confidence 3789999976 5555555 544
No 15
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=97.37 E-value=0.0016 Score=59.49 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=74.0
Q ss_pred ccccCeeEEEEEEcCCCCC-CcCceeEEEEEeeCCCCeeEEEcCCCcCCCcccCCCcceeEee-cCCCCCeEEEEEEEcC
Q 031172 40 VAAKSCSYTVIIKTSCSSK-SYTRDKISLAFGDAYGNEVYIKRLDDPYSRTFESCSTDTFQIS-GPCTYDICYQYLLRSG 117 (164)
Q Consensus 40 ~~~~~~~Y~V~V~TG~~~~-AGTda~VsI~l~G~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~-~~~lG~i~~l~L~hdG 117 (164)
+.-....|+|+|....... .+++..+.|.|+|..|++ ....+. ...++.|++-+|.+. ..++|++.+|++..++
T Consensus 304 ~Pf~~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~---~~~~~~~~t~~~~i~~~~~~g~~~~v~~~w~~ 379 (442)
T TIGR03230 304 MPYKVFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEK-ENIPFT---LPEVSTNKTYSFLITTDVDIGELLMVKLKWEK 379 (442)
T ss_pred CCceEEEEEEEEEEeccccccccCCcEEEEEEcCCCCc-cceEEe---eeeecCCCeEEEEEecccCCCceEEEEEEEeC
Confidence 4555678999999886544 478899999999999974 444443 246999999999995 4667999999999986
Q ss_pred CC--Cce---------eeEEEEEeC-CCCeEEE
Q 031172 118 SD--GWK---------PESVKICGQ-NIRTVTF 138 (164)
Q Consensus 118 ~d--~W~---------~e~V~V~~~-~~~~~~F 138 (164)
.. .|. .++|.|+.. +.+++.|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~i~v~~ge~~~~~~f 412 (442)
T TIGR03230 380 DTYISWSDWWSSPGFHIRKLRIKSGETQSKVIF 412 (442)
T ss_pred CCcccchhhhcCCceeEEEEEEEeCCCccEEEE
Confidence 53 776 789999966 5566666
No 16
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=82.64 E-value=5.9 Score=30.91 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred ceeEee--c-CCCCCeEEEEEEEcCCCCceeeEEEEEeC-CCCeEEEEcCeecCCC
Q 031172 96 DTFQIS--G-PCTYDICYQYLLRSGSDGWKPESVKICGQ-NIRTVTFFYNTFIPDG 147 (164)
Q Consensus 96 D~F~v~--~-~~lG~i~~l~L~hdG~d~W~~e~V~V~~~-~~~~~~F~cnrWL~~~ 147 (164)
..|.++ . ...|.+=.+.|.-.=..--|+..|++.+. ...+.+|.||.|+...
T Consensus 70 ~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~ 125 (137)
T cd01751 70 SAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPK 125 (137)
T ss_pred eEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccC
Confidence 378764 2 44588888877765566899999999865 4478999999999864
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.28 E-value=8.1 Score=28.29 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHhhhcCCccc
Q 031172 4 LLLFLLIFATATIFSHAGSSI 24 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (164)
+|||.|+|+.++.+|++++..
T Consensus 6 ~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 567777777777777776654
No 18
>PLN02264 lipoxygenase
Probab=52.50 E-value=64 Score=32.60 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=39.4
Q ss_pred eeEee--c-CCCCCeEEEEEEEcCCCCceeeEEEEEeCCCCeEEEEcCeecCCCc
Q 031172 97 TFQIS--G-PCTYDICYQYLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDGV 148 (164)
Q Consensus 97 ~F~v~--~-~~lG~i~~l~L~hdG~d~W~~e~V~V~~~~~~~~~F~cnrWL~~~~ 148 (164)
.|.++ . ...|.+=.+.|.-.-..--|++.|++.+.-+.+.+|+||.|+-..-
T Consensus 159 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~ 213 (919)
T PLN02264 159 HYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQK 213 (919)
T ss_pred EEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCc
Confidence 78764 2 4458887777766555689999999987534789999999998643
No 19
>PLN02337 lipoxygenase
Probab=44.57 E-value=64 Score=32.41 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=39.6
Q ss_pred eeEee--c-CCCCCeEEEEEEEcCCCCceeeEEEEEeC-CCCeEEEEcCeecCCCc
Q 031172 97 TFQIS--G-PCTYDICYQYLLRSGSDGWKPESVKICGQ-NIRTVTFFYNTFIPDGV 148 (164)
Q Consensus 97 ~F~v~--~-~~lG~i~~l~L~hdG~d~W~~e~V~V~~~-~~~~~~F~cnrWL~~~~ 148 (164)
.|.++ . ...|.+=.+.|.-.-..--|++.|++.+. ...+.+|+||.|+-..-
T Consensus 96 ~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~ 151 (866)
T PLN02337 96 AFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAK 151 (866)
T ss_pred EEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCC
Confidence 67764 2 44588888877766556899999999864 54689999999998653
No 20
>PLN02305 lipoxygenase
Probab=43.10 E-value=69 Score=32.38 Aligned_cols=55 Identities=11% Similarity=-0.107 Sum_probs=40.4
Q ss_pred ceeEee--c-CCCCCeEEEEEEEcCCCCceeeEEEEEeCCCCeEEEEcCeecCCCcee
Q 031172 96 DTFQIS--G-PCTYDICYQYLLRSGSDGWKPESVKICGQNIRTVTFFYNTFIPDGVWF 150 (164)
Q Consensus 96 D~F~v~--~-~~lG~i~~l~L~hdG~d~W~~e~V~V~~~~~~~~~F~cnrWL~~~~~~ 150 (164)
..|.++ . ...|.+=.+.|.-.-..--|+..|++.+.-+.+.+|.||.|+-..--|
T Consensus 154 ~~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~ 211 (918)
T PLN02305 154 VEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDN 211 (918)
T ss_pred eEEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCC
Confidence 367764 2 444887777776655568999999998764478999999999865433
No 21
>CHL00038 psbL photosystem II protein L
Probab=39.35 E-value=22 Score=22.07 Aligned_cols=15 Identities=47% Similarity=0.673 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhc
Q 031172 5 LLFLLIFATATIFSH 19 (164)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (164)
.-|+|||+.++-||+
T Consensus 20 ~GLLlifvl~vlfss 34 (38)
T CHL00038 20 WGLLLIFVLAVLFSN 34 (38)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457889988887764
No 22
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=36.98 E-value=26 Score=21.85 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhc
Q 031172 5 LLFLLIFATATIFSH 19 (164)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (164)
+-|+|||+.++-||+
T Consensus 21 ~GlLlifvl~vLFss 35 (39)
T PRK00753 21 LGLLLVFVLGILFSS 35 (39)
T ss_pred HHHHHHHHHHHHHHh
Confidence 457889998888774
No 23
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.24 E-value=59 Score=26.59 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=51.7
Q ss_pred cccCeeEEEEEEcCCCCCCcCceeEEEEEeeCCCCeeEEEcCCCcCC-CcccCC-CcceeEeecCCCCCeEEEEEEEcCC
Q 031172 41 AAKSCSYTVIIKTSCSSKSYTRDKISLAFGDAYGNEVYIKRLDDPYS-RTFESC-STDTFQISGPCTYDICYQYLLRSGS 118 (164)
Q Consensus 41 ~~~~~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G~~s~~~~Ld~~~~-~~FErG-svD~F~v~~~~lG~i~~l~L~hdG~ 118 (164)
.....+|+.+|=-||-..|-|.-.|-| .+|-. -..--..|+. -.-.+| -.-+|+.++...-+=.+=+-|..|.
T Consensus 34 ~gs~~~atlrVPhgcdgkaTtkV~vkl----PeGvi-~~kp~PkpGW~le~~Kg~y~~ty~~hG~~i~~G~~ev~w~~gn 108 (178)
T COG4549 34 AGSTYKATLRVPHGCDGKATTKVRVKL----PEGVI-FAKPQPKPGWTLETIKGDYEKTYQNHGSGITSGVKEVFWKGGN 108 (178)
T ss_pred CCceEEEEEecCCCCCCCcceEEEEeC----CCcee-eecccCCCCcEEEEeecceeeeeeccCCccccceeEEEeccCC
Confidence 466788999999998877665444433 34421 1111122220 011111 2345666655442223445566654
Q ss_pred --CCceeeEEEEE-----e-CCCCeEEEEcCeecCC
Q 031172 119 --DGWKPESVKIC-----G-QNIRTVTFFYNTFIPD 146 (164)
Q Consensus 119 --d~W~~e~V~V~-----~-~~~~~~~F~cnrWL~~ 146 (164)
|.-| +-..|+ | |.+....||.-|--.+
T Consensus 109 lPde~Y-D~fvV~~~la~D~p~~~tl~f~~~Q~cg~ 143 (178)
T COG4549 109 LPDEFY-DEFVVRGTLAEDTPVGTTLIFPVTQECGD 143 (178)
T ss_pred Cchhhc-cceEEEEEecCCCcccceEecceEEeecC
Confidence 4666 433333 2 2567788987766554
No 24
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=30.73 E-value=35 Score=29.06 Aligned_cols=10 Identities=60% Similarity=0.790 Sum_probs=7.4
Q ss_pred ChhhHHHHHH
Q 031172 1 MVKLLLFLLI 10 (164)
Q Consensus 1 ~~~~~~~~~~ 10 (164)
|+|++||+|-
T Consensus 1 ~~~~~~~~~~ 10 (343)
T PRK10936 1 MRKLLFLLLS 10 (343)
T ss_pred ChhHHHHHHH
Confidence 8898777664
No 25
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=26.47 E-value=2.5e+02 Score=21.98 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=40.3
Q ss_pred EEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEEEEcCC------CCceee-EEEEEeCC
Q 031172 78 YIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYLLRSGS------DGWKPE-SVKICGQN 132 (164)
Q Consensus 78 ~~~~Ld~~~~~~FErGsvD~F~v~~~~lG~i~~l~L~hdG~------d~W~~e-~V~V~~~~ 132 (164)
+...++..-+.-|++|..+.-.+.-.. +.+.+|+..-.+. +.|+-| |..|..|.
T Consensus 65 Y~E~IeKnv~lp~~~g~~n~l~fe~~~-dnll~iky~~~~~~~~~~~~~w~~E~W~RV~~P~ 125 (133)
T PF14869_consen 65 YVESIEKNVHLPFLDGKDNELEFELLH-DNLLKIKYFLPGDLNGNEINQWFHEYWKRVPSPD 125 (133)
T ss_pred ceeeecceecCcccCCCccEEEEEecC-CCEEEEEEEcCCCccccccCCcEEEEEEeccCCc
Confidence 344444444577999999988887554 8899999888876 699987 78887664
No 26
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=25.05 E-value=56 Score=18.49 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=8.9
Q ss_pred ChhhHHHHHHHHHHH
Q 031172 1 MVKLLLFLLIFATAT 15 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (164)
|.|.+++.++.+|.+
T Consensus 6 mmKkil~~l~a~~~L 20 (25)
T PF08139_consen 6 MMKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666654
No 27
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=24.23 E-value=2.6e+02 Score=20.00 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=39.7
Q ss_pred EEEcCCCCCCcCceeEEEEEee-CCCCeeEEEcCCCcCCCcccCCCcceeEeecCCCCCeEEEEE-EEcC
Q 031172 50 IIKTSCSSKSYTRDKISLAFGD-AYGNEVYIKRLDDPYSRTFESCSTDTFQISGPCTYDICYQYL-LRSG 117 (164)
Q Consensus 50 ~V~TG~~~~AGTda~VsI~l~G-~~G~~s~~~~Ld~~~~~~FErGsvD~F~v~~~~lG~i~~l~L-~hdG 117 (164)
.|...+...+---+.+.|.|++ .+|......+=|..+.-.|... ...|.+....-+++-+|++ +..+
T Consensus 16 ~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~-~~~~~viA~~~~d~s~l~l~~~~~ 84 (97)
T PF11974_consen 16 LVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST-KKPFLVIARKGGDFSFLPLDWGSA 84 (97)
T ss_pred EEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC-CCCEEEEEEECCcEEEEEcCCCCC
Confidence 3444444445555667888899 8876544444455555556665 4444454444578888888 4443
No 28
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=23.24 E-value=69 Score=19.80 Aligned_cols=15 Identities=47% Similarity=0.642 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhhc
Q 031172 5 LLFLLIFATATIFSH 19 (164)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (164)
.-|+|||+.++-||+
T Consensus 19 ~GLllifvl~vLFss 33 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 457788888777663
No 29
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=22.27 E-value=1.6e+02 Score=23.06 Aligned_cols=31 Identities=6% Similarity=-0.213 Sum_probs=15.3
Q ss_pred CeeEEEEEEcCCCCCCcCceeEEEEEeeCCC
Q 031172 44 SCSYTVIIKTSCSSKSYTRDKISLAFGDAYG 74 (164)
Q Consensus 44 ~~~Y~V~V~TG~~~~AGTda~VsI~l~G~~G 74 (164)
.-...|+++|+...-.|.....-=.+.|+..
T Consensus 44 ~~~s~V~lY~~~eel~~~~~~~LG~V~GesC 74 (133)
T PRK10781 44 PRAAPVRLYTNAEELVGKPFRDLGEVSGESC 74 (133)
T ss_pred CCCCceEEEcCHHHHcCCCCceeeeEEcccc
Confidence 3447788888733333333332223344444
No 30
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=21.50 E-value=92 Score=25.26 Aligned_cols=14 Identities=43% Similarity=0.702 Sum_probs=9.2
Q ss_pred ChhhHHHHHHHHHH
Q 031172 1 MVKLLLFLLIFATA 14 (164)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (164)
|.|+++|+||+...
T Consensus 1 mk~i~~l~l~lll~ 14 (216)
T PF11153_consen 1 MKKILLLLLLLLLT 14 (216)
T ss_pred ChHHHHHHHHHHHH
Confidence 77877777665443
No 31
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=20.09 E-value=2.2e+02 Score=18.40 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=22.5
Q ss_pred eeEEEEEEcCCCCC--CcCceeEEEEEeeCCCC
Q 031172 45 CSYTVIIKTSCSSK--SYTRDKISLAFGDAYGN 75 (164)
Q Consensus 45 ~~Y~V~V~TG~~~~--AGTda~VsI~l~G~~G~ 75 (164)
-.|.+.|.-.+... .-+...|.|.+.+.+.+
T Consensus 45 ~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~ 77 (79)
T smart00112 45 PEYTLTVEATDGGGPPLSSTATVTVTVLDVNDN 77 (79)
T ss_pred CeEEEEEEEEECCCCCcccEEEEEEEEEECCCC
Confidence 45766666666543 67888999999988864
Done!