Query 031174
Match_columns 164
No_of_seqs 164 out of 1184
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 1.4E-30 3.1E-35 205.7 13.2 142 1-144 188-335 (336)
2 COG0667 Tas Predicted oxidored 100.0 2E-28 4.3E-33 195.1 13.7 133 1-136 178-311 (316)
3 PRK10625 tas putative aldo-ket 99.9 1.7E-26 3.8E-31 186.1 13.6 135 1-135 206-340 (346)
4 TIGR01293 Kv_beta voltage-depe 99.9 1.4E-25 3E-30 178.9 12.9 131 1-132 177-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 99.9 1.3E-24 2.7E-29 175.3 13.2 134 1-135 194-334 (346)
6 PF00248 Aldo_ket_red: Aldo/ke 99.9 1.2E-22 2.7E-27 159.0 10.3 122 1-133 160-282 (283)
7 PLN02587 L-galactose dehydroge 99.9 3.9E-22 8.3E-27 158.9 12.6 120 1-135 178-301 (314)
8 COG0656 ARA1 Aldo/keto reducta 99.9 6.1E-22 1.3E-26 154.0 10.9 103 1-137 164-267 (280)
9 PRK11172 dkgB 2,5-diketo-D-glu 99.8 9.4E-21 2E-25 147.9 11.4 101 1-135 153-253 (267)
10 cd06660 Aldo_ket_red Aldo-keto 99.8 3.3E-20 7.2E-25 145.4 12.1 114 1-131 171-284 (285)
11 PRK14863 bifunctional regulato 99.8 1.8E-20 3.8E-25 148.1 9.0 116 1-131 163-279 (292)
12 PRK10376 putative oxidoreducta 99.8 1.5E-19 3.3E-24 142.6 11.0 103 1-134 186-288 (290)
13 KOG1577 Aldo/keto reductase fa 99.8 1.2E-19 2.5E-24 141.6 9.9 107 1-137 182-288 (300)
14 PRK11565 dkgA 2,5-diketo-D-glu 99.8 3.3E-19 7.3E-24 139.7 11.3 104 1-136 161-264 (275)
15 COG4989 Predicted oxidoreducta 99.7 1.8E-17 3.8E-22 125.7 10.0 113 1-136 180-295 (298)
16 COG1453 Predicted oxidoreducta 99.5 6.6E-14 1.4E-18 111.4 9.8 106 1-134 173-285 (391)
17 KOG1576 Predicted oxidoreducta 99.4 6.2E-13 1.3E-17 102.0 9.2 109 2-125 204-312 (342)
18 PRK06424 transcription factor; 78.0 14 0.0003 26.3 6.6 109 11-134 22-137 (144)
19 PF14502 HTH_41: Helix-turn-he 74.1 3.5 7.7E-05 23.6 2.2 30 70-99 7-38 (48)
20 PF14871 GHL6: Hypothetical gl 72.4 3.8 8.2E-05 28.6 2.5 25 8-32 43-67 (132)
21 PF10668 Phage_terminase: Phag 67.1 13 0.00029 22.3 3.7 17 71-87 24-40 (60)
22 PF01402 RHH_1: Ribbon-helix-h 63.7 12 0.00026 19.7 3.0 20 68-87 10-29 (39)
23 PF00356 LacI: Bacterial regul 63.3 7.4 0.00016 21.9 2.1 41 72-118 2-42 (46)
24 COG4130 Predicted sugar epimer 62.1 29 0.00062 26.7 5.5 52 12-82 86-137 (272)
25 PRK09284 thiamine biosynthesis 61.6 33 0.00072 29.9 6.4 27 4-35 352-378 (607)
26 smart00657 RPOL4c DNA-directed 60.6 32 0.0007 23.3 5.3 59 68-136 56-114 (118)
27 PF03102 NeuB: NeuB family; I 59.8 45 0.00097 25.8 6.5 31 87-117 105-135 (241)
28 PF11242 DUF2774: Protein of u 58.3 16 0.00034 22.1 2.9 22 71-92 15-36 (63)
29 PLN02444 HMP-P synthase 56.9 43 0.00094 29.3 6.4 27 4-35 357-383 (642)
30 KOG0237 Glycinamide ribonucleo 56.6 44 0.00096 29.6 6.4 75 12-96 58-144 (788)
31 COG2089 SpsE Sialic acid synth 55.5 34 0.00074 27.8 5.3 22 12-34 93-114 (347)
32 PRK06298 type III secretion sy 54.7 15 0.00032 30.2 3.2 26 12-37 293-318 (356)
33 TIGR00190 thiC thiamine biosyn 53.7 59 0.0013 27.3 6.5 27 4-35 199-225 (423)
34 TIGR00789 flhB_rel flhB C-term 52.7 25 0.00054 22.5 3.4 25 12-36 30-54 (82)
35 PF07027 DUF1318: Protein of u 52.3 39 0.00086 22.2 4.4 29 63-91 44-72 (95)
36 PRK13352 thiamine biosynthesis 51.7 65 0.0014 27.1 6.5 27 4-35 202-228 (431)
37 PF11020 DUF2610: Domain of un 50.5 53 0.0011 20.9 4.5 28 63-90 48-75 (82)
38 PRK13109 flhB flagellar biosyn 50.0 19 0.0004 29.6 3.1 26 12-37 301-326 (358)
39 PF01527 HTH_Tnp_1: Transposas 49.7 26 0.00056 21.2 3.1 24 70-94 24-47 (76)
40 PF02796 HTH_7: Helix-turn-hel 48.3 43 0.00094 18.3 3.6 15 72-86 24-38 (45)
41 PRK08227 autoinducer 2 aldolas 46.9 1E+02 0.0022 24.2 6.7 69 12-107 130-203 (264)
42 PF13518 HTH_28: Helix-turn-he 46.7 26 0.00057 19.3 2.6 22 71-93 14-35 (52)
43 TIGR01404 FlhB_rel_III type II 46.7 23 0.00049 28.9 3.1 26 12-37 291-316 (342)
44 PRK12721 secretion system appa 46.6 23 0.0005 29.0 3.1 26 12-37 292-317 (349)
45 TIGR03569 NeuB_NnaB N-acetylne 46.4 50 0.0011 26.8 5.0 20 12-32 79-98 (329)
46 PRK09856 fructoselysine 3-epim 45.0 53 0.0011 25.2 4.9 52 12-82 93-144 (275)
47 PRK10558 alpha-dehydro-beta-de 44.9 85 0.0019 24.4 6.0 35 85-119 81-115 (256)
48 PF12651 RHH_3: Ribbon-helix-h 44.8 39 0.00085 18.7 3.0 20 67-86 12-31 (44)
49 PRK12773 flhB flagellar biosyn 43.7 27 0.00059 30.8 3.3 26 12-37 591-616 (646)
50 cd01075 NAD_bind_Leu_Phe_Val_D 42.5 68 0.0015 23.8 4.9 72 13-93 123-196 (200)
51 TIGR03070 couple_hipB transcri 40.4 36 0.00079 19.0 2.6 21 70-90 5-25 (58)
52 PF08418 Pol_alpha_B_N: DNA po 40.0 34 0.00074 26.3 3.1 49 66-115 9-60 (253)
53 PRK12468 flhB flagellar biosyn 39.6 35 0.00075 28.4 3.2 26 12-37 299-324 (386)
54 COG0159 TrpA Tryptophan syntha 39.2 1.4E+02 0.0029 23.6 6.2 21 12-32 137-157 (265)
55 PRK12772 bifunctional flagella 38.6 35 0.00076 30.2 3.2 26 12-37 555-580 (609)
56 PF10723 RepB-RCR_reg: Replica 38.2 66 0.0014 20.6 3.7 25 68-92 52-76 (84)
57 COG0422 ThiC Thiamine biosynth 37.0 1.7E+02 0.0037 24.5 6.7 27 4-35 200-226 (432)
58 PRK08156 type III secretion sy 36.9 39 0.00084 27.9 3.1 26 12-37 287-312 (361)
59 COG2185 Sbm Methylmalonyl-CoA 36.8 98 0.0021 22.0 4.7 29 6-35 48-76 (143)
60 PF04914 DltD_C: DltD C-termin 36.6 46 0.001 23.2 3.0 55 12-84 39-93 (130)
61 PRK09108 type III secretion sy 36.4 49 0.0011 27.1 3.6 25 12-36 294-318 (353)
62 PF03874 RNA_pol_Rpb4: RNA pol 36.1 40 0.00086 22.6 2.6 56 69-134 59-114 (117)
63 COG0350 Ada Methylated DNA-pro 34.4 64 0.0014 23.5 3.6 34 72-105 108-141 (168)
64 PRK09856 fructoselysine 3-epim 34.4 1.8E+02 0.0039 22.2 6.4 57 12-83 50-106 (275)
65 PRK11675 LexA regulated protei 34.0 62 0.0013 21.1 3.0 23 67-89 60-82 (90)
66 PF03851 UvdE: UV-endonuclease 33.0 1.7E+02 0.0037 23.1 6.0 54 12-81 48-101 (275)
67 PRK10128 2-keto-3-deoxy-L-rham 32.6 1.9E+02 0.0042 22.7 6.2 35 85-119 80-114 (267)
68 PF01964 ThiC: ThiC family; I 31.5 53 0.0012 27.5 3.0 27 4-35 198-224 (420)
69 PF11039 DUF2824: Protein of u 31.3 63 0.0014 22.8 2.9 45 86-130 83-147 (151)
70 TIGR03239 GarL 2-dehydro-3-deo 31.3 1.9E+02 0.0041 22.4 5.9 35 85-119 74-108 (249)
71 TIGR03586 PseI pseudaminic aci 31.2 1.2E+02 0.0027 24.6 5.1 19 12-31 80-98 (327)
72 PRK01045 ispH 4-hydroxy-3-meth 31.0 1.6E+02 0.0035 23.6 5.6 44 70-114 226-275 (298)
73 COG1004 Ugd Predicted UDP-gluc 30.4 11 0.00024 31.4 -1.0 27 135-164 243-269 (414)
74 PF01476 LysM: LysM domain; I 30.2 61 0.0013 17.1 2.3 18 70-87 7-24 (44)
75 PF13467 RHH_4: Ribbon-helix-h 29.6 67 0.0014 19.7 2.6 25 70-94 24-48 (67)
76 PRK04452 acetyl-CoA decarbonyl 29.4 1.1E+02 0.0025 24.7 4.5 21 12-32 165-185 (319)
77 COG1564 THI80 Thiamine pyropho 29.2 1.2E+02 0.0027 23.0 4.4 40 78-117 74-115 (212)
78 COG2963 Transposase and inacti 29.0 1.5E+02 0.0033 19.5 4.6 37 55-92 6-47 (116)
79 PF13167 GTP-bdg_N: GTP-bindin 28.3 33 0.00071 22.6 1.1 66 67-134 8-80 (95)
80 COG0497 RecN ATPase involved i 28.0 1E+02 0.0023 27.0 4.3 60 56-115 293-352 (557)
81 PF11239 DUF3040: Protein of u 27.8 28 0.00062 22.0 0.7 29 120-148 2-30 (82)
82 PRK05339 PEP synthetase regula 27.8 47 0.001 26.2 2.1 121 2-132 63-209 (269)
83 TIGR00328 flhB flagellar biosy 27.7 50 0.0011 27.0 2.3 26 12-37 292-317 (347)
84 COG5484 Uncharacterized conser 27.3 46 0.00099 26.1 1.9 24 71-95 21-44 (279)
85 smart00481 POLIIIAc DNA polyme 27.2 69 0.0015 18.9 2.4 21 12-32 18-38 (67)
86 PHA01623 hypothetical protein 26.9 1.1E+02 0.0023 18.0 3.0 20 67-86 23-42 (56)
87 PF05119 Terminase_4: Phage te 26.2 1.4E+02 0.0029 19.1 3.8 26 61-86 62-87 (100)
88 COG0761 lytB 4-Hydroxy-3-methy 26.1 1.7E+02 0.0037 23.4 4.9 45 70-115 228-278 (294)
89 TIGR02384 RelB_DinJ addiction 26.1 1.5E+02 0.0033 18.8 3.9 26 70-95 15-43 (83)
90 PF12244 DUF3606: Protein of u 25.9 69 0.0015 18.8 2.1 20 70-89 21-40 (57)
91 PF13700 DUF4158: Domain of un 25.8 1.8E+02 0.004 20.6 4.8 43 67-112 119-163 (166)
92 TIGR01378 thi_PPkinase thiamin 25.7 1.2E+02 0.0026 22.6 3.9 39 79-117 70-110 (203)
93 PF03954 Lectin_N: Hepatic lec 25.7 55 0.0012 23.1 1.9 60 71-134 25-87 (138)
94 PF00816 Histone_HNS: H-NS his 25.7 64 0.0014 20.7 2.1 22 65-86 22-43 (93)
95 COG3612 Uncharacterized protei 25.6 2.6E+02 0.0056 20.1 5.5 88 8-95 38-139 (157)
96 PRK13702 replication protein; 25.3 1.6E+02 0.0035 19.0 3.8 26 68-93 52-77 (85)
97 PRK05702 flhB flagellar biosyn 25.1 58 0.0013 26.8 2.2 26 12-37 299-324 (359)
98 PF04746 DUF575: Protein of un 24.6 42 0.00091 22.0 1.1 33 102-134 64-96 (101)
99 COG1026 Predicted Zn-dependent 24.6 2.4E+02 0.0051 26.6 6.0 71 65-135 416-494 (978)
100 PF13443 HTH_26: Cro/C1-type H 24.6 25 0.00053 20.5 -0.0 13 73-85 14-26 (63)
101 COG1377 FlhB Flagellar biosynt 24.2 61 0.0013 26.8 2.2 27 12-38 299-325 (363)
102 PF13936 HTH_38: Helix-turn-he 24.1 87 0.0019 17.1 2.2 17 71-87 22-38 (44)
103 COG3784 Uncharacterized protei 24.0 1.5E+02 0.0032 19.8 3.5 25 63-87 58-82 (109)
104 PHA01748 hypothetical protein 23.7 1.2E+02 0.0027 17.9 3.0 21 67-87 12-32 (60)
105 PRK00901 methylated-DNA--prote 23.4 1E+02 0.0022 22.1 3.0 34 72-105 93-126 (155)
106 PF05673 DUF815: Protein of un 23.4 1E+02 0.0022 24.1 3.1 28 69-96 200-232 (249)
107 TIGR03849 arch_ComA phosphosul 23.3 75 0.0016 24.6 2.4 22 9-30 41-62 (237)
108 PRK09943 DNA-binding transcrip 23.3 70 0.0015 23.2 2.2 54 67-120 7-62 (185)
109 PF13404 HTH_AsnC-type: AsnC-t 23.3 1.1E+02 0.0024 16.6 2.5 20 71-90 19-38 (42)
110 PF04967 HTH_10: HTH DNA bindi 23.1 94 0.002 18.0 2.3 17 71-87 25-41 (53)
111 PHA01976 helix-turn-helix prot 23.0 54 0.0012 19.2 1.3 20 70-89 5-24 (67)
112 PF12551 PHBC_N: Poly-beta-hyd 22.9 77 0.0017 17.9 1.8 13 79-91 22-34 (46)
113 TIGR00629 uvde UV damage endon 22.7 2.8E+02 0.0061 22.4 5.6 54 12-81 55-108 (312)
114 PF12668 DUF3791: Protein of u 22.7 1.6E+02 0.0034 17.4 3.3 53 70-133 6-58 (62)
115 PRK07535 methyltetrahydrofolat 22.6 2.8E+02 0.006 21.6 5.5 53 12-87 106-158 (261)
116 PF13744 HTH_37: Helix-turn-he 22.6 62 0.0013 20.1 1.6 56 64-119 15-73 (80)
117 COG2102 Predicted ATPases of P 22.4 1.8E+02 0.004 22.3 4.3 62 3-84 116-177 (223)
118 TIGR02899 spore_safA spore coa 22.3 93 0.002 16.0 2.1 17 71-87 6-22 (44)
119 PF04221 RelB: RelB antitoxin; 22.2 1.9E+02 0.0042 18.1 3.8 27 69-95 13-42 (83)
120 KOG4559 Uncharacterized conser 22.2 2E+02 0.0044 19.2 3.9 31 65-95 63-93 (120)
121 PF02570 CbiC: Precorrin-8X me 22.1 1.6E+02 0.0034 22.2 3.8 35 70-104 93-127 (198)
122 PF03861 ANTAR: ANTAR domain; 22.1 1.6E+02 0.0034 16.9 3.2 22 67-88 32-53 (56)
123 PF00046 Homeobox: Homeobox do 22.0 1.5E+02 0.0033 16.6 3.1 22 70-91 28-49 (57)
124 PRK08286 cbiC cobalt-precorrin 21.9 1E+02 0.0022 23.5 2.9 33 71-103 107-139 (214)
125 PRK05802 hypothetical protein; 21.8 44 0.00095 26.9 0.9 36 75-110 178-213 (320)
126 PRK14981 DNA-directed RNA poly 21.7 1E+02 0.0023 20.7 2.6 34 102-135 76-109 (112)
127 TIGR01761 thiaz-red thiazoliny 21.5 2.3E+02 0.0049 23.2 5.0 61 70-135 39-113 (343)
128 PF05920 Homeobox_KN: Homeobox 21.5 1.4E+02 0.003 16.1 2.6 23 70-92 14-36 (40)
129 PRK10328 DNA binding protein, 21.4 1.7E+02 0.0036 20.6 3.6 23 64-86 53-75 (134)
130 PRK08334 translation initiatio 21.3 2.2E+02 0.0049 23.4 4.9 31 77-107 216-249 (356)
131 PRK09726 antitoxin HipB; Provi 21.2 1.2E+02 0.0027 19.0 2.8 25 70-94 15-39 (88)
132 COG0773 MurC UDP-N-acetylmuram 21.2 50 0.0011 28.2 1.1 30 74-103 111-141 (459)
133 PF06971 Put_DNA-bind_N: Putat 21.1 79 0.0017 18.1 1.6 13 74-86 33-45 (50)
134 PF02817 E3_binding: e3 bindin 21.1 56 0.0012 17.6 1.0 17 70-86 7-23 (39)
135 cd00086 homeodomain Homeodomai 21.1 1.5E+02 0.0032 16.5 3.0 24 70-93 28-51 (59)
136 PRK12738 kbaY tagatose-bisphos 21.0 1.6E+02 0.0034 23.5 3.9 16 12-27 118-133 (286)
137 TIGR00216 ispH_lytB (E)-4-hydr 21.0 2.4E+02 0.0052 22.4 4.8 44 70-114 224-273 (280)
138 PF01261 AP_endonuc_2: Xylose 20.8 3.2E+02 0.0068 19.4 6.2 57 12-82 30-86 (213)
139 PF07287 DUF1446: Protein of u 20.7 1.5E+02 0.0032 24.5 3.8 40 12-82 61-100 (362)
140 PF07498 Rho_N: Rho terminatio 20.5 83 0.0018 17.2 1.6 14 69-82 7-20 (43)
141 PF08727 P3A: Poliovirus 3A pr 20.3 74 0.0016 18.9 1.4 12 12-23 30-41 (57)
142 COG4792 EscU Type III secretor 20.2 1.4E+02 0.003 24.2 3.3 27 12-38 293-319 (349)
143 PRK00979 tetrahydromethanopter 20.1 3.7E+02 0.008 21.7 5.8 22 3-24 127-148 (308)
144 TIGR00016 ackA acetate kinase. 20.1 4.5E+02 0.0098 22.1 6.5 43 71-115 253-296 (404)
145 PRK12360 4-hydroxy-3-methylbut 20.1 2.9E+02 0.0063 22.0 5.2 44 70-114 225-274 (281)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=99.97 E-value=1.4e-30 Score=205.73 Aligned_cols=142 Identities=43% Similarity=0.724 Sum_probs=126.6
Q ss_pred Ccccccccc-hhhhHHHHHHHhCCeEeecccccccccCCC-CCCCCCCCCcccccCCC----CchhhHHHHHHHHHHHHH
Q 031174 1 MEWSLWTRD-IEEEIVPLCRELGIGIVPYSPIGRGFFAGK-AVVESLPADSFVASHPR----FKEENLEKNKNIYIRIDN 74 (164)
Q Consensus 1 v~ynll~r~-~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~ 74 (164)
++|||+.|+ .|++++++|++.||++++||||++|+|||+ ....+.+.++.+..... +..+ +.++.+++++++
T Consensus 188 ~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 265 (336)
T KOG1575|consen 188 VEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEG--DKQKPILEALSK 265 (336)
T ss_pred eechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccccccchh--hhHHHHHHHHHH
Confidence 589999999 557799999999999999999999999999 55566777766554433 3333 778899999999
Q ss_pred HHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCCCccCCCcch
Q 031174 75 LAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPIQEVEGDRTY 144 (164)
Q Consensus 75 ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 144 (164)
+|+++|+|++|+||+|+++++.+++||||+++.+||+||++|+.+.|+++++.+|+++.+.....+++|.
T Consensus 266 iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 266 IAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888764
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=99.96 E-value=2e-28 Score=195.07 Aligned_cols=133 Identities=41% Similarity=0.703 Sum_probs=119.8
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCccccc-CCCCchhhHHHHHHHHHHHHHHHHHc
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVAS-HPRFKEENLEKNKNIYIRIDNLAKKH 79 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ia~~~ 79 (164)
.+||+++|+.|.+++++|+++||++++||||++|+|||++... +. +.|.. .++|..+..+++..++..++++|+++
T Consensus 178 ~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~~-~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 254 (316)
T COG0667 178 PEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--PE-GSRASELPRFQRELTERGLAILRALEELAKEL 254 (316)
T ss_pred ccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC--cc-hhhccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 4799999998888999999999999999999999999996544 33 33333 37788888999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCCC
Q 031174 80 KCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPIQ 136 (164)
Q Consensus 80 g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 136 (164)
|+|++|+||+|++++|.|++||+|+++++||++|++++++.|++++++.|+......
T Consensus 255 g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~~ 311 (316)
T COG0667 255 GATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAEE 311 (316)
T ss_pred CCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999887644
No 3
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.94 E-value=1.7e-26 Score=186.09 Aligned_cols=135 Identities=27% Similarity=0.378 Sum_probs=112.5
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcC
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHK 80 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 80 (164)
++||+++|..+.+++++|+++||++++|+||++|+|+|++.....|.+.......+|.....+..+++++.++++|+++|
T Consensus 206 ~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g 285 (346)
T PRK10625 206 NPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHG 285 (346)
T ss_pred CCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhC
Confidence 47999999877789999999999999999999999999854433333321111223333233556778899999999999
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCC
Q 031174 81 CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPI 135 (164)
Q Consensus 81 ~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 135 (164)
+|++|+||+|+++++.|+++|+|+++++||++|+++++++|++++++.|+++.+.
T Consensus 286 ~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~~ 340 (346)
T PRK10625 286 LDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQV 340 (346)
T ss_pred CCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998753
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.93 E-value=1.4e-25 Score=178.93 Aligned_cols=131 Identities=27% Similarity=0.474 Sum_probs=107.6
Q ss_pred Ccccccccc-hhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCccccc--CCCCc----hhhHHHHHHHHHHHH
Q 031174 1 MEWSLWTRD-IEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVAS--HPRFK----EENLEKNKNIYIRID 73 (164)
Q Consensus 1 v~ynll~r~-~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~l~ 73 (164)
++||+++|+ .+.+++++|+++||++++|+||++|+|+|++... ++.+..+.. .+++. .+......++++.++
T Consensus 177 ~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 255 (317)
T TIGR01293 177 AEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQ 255 (317)
T ss_pred cccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccchhhhhhcchhhHHHHHHHHHHH
Confidence 479999997 4778999999999999999999999999986443 344332111 11111 122234667788999
Q ss_pred HHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCC--cCCHHHHHHHHhh
Q 031174 74 NLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLAL--KLTKEDLKEIADA 132 (164)
Q Consensus 74 ~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~--~Lt~e~~~~l~~~ 132 (164)
++|+++|+|++|+||+|++++|+|+++|+|+++++||++|++++++ +||++++++|+++
T Consensus 256 ~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 256 AIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999987 9999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.92 E-value=1.3e-24 Score=175.34 Aligned_cols=134 Identities=22% Similarity=0.441 Sum_probs=108.9
Q ss_pred Ccccccccchh-hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCccccc----CCCCchhh-HHHHHHHHHHHHH
Q 031174 1 MEWSLWTRDIE-EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVAS----HPRFKEEN-LEKNKNIYIRIDN 74 (164)
Q Consensus 1 v~ynll~r~~e-~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~l~~ 74 (164)
++||+++|..+ .+++++|+++||++++|+||++|+|++++... .|.+..... .++|.+.. .++++++++.+++
T Consensus 194 ~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (346)
T PRK09912 194 PSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNE 272 (346)
T ss_pred ccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCccccccccchhhhchhhccHHHHHHHHHHHH
Confidence 47999999765 47999999999999999999999999985332 232211100 01222222 2456777889999
Q ss_pred HHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhcc-CCcCCHHHHHHHHhhCCC
Q 031174 75 LAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSL-ALKLTKEDLKEIADAVPI 135 (164)
Q Consensus 75 ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~-~~~Lt~e~~~~l~~~~~~ 135 (164)
+|+++|+|++|+||+|++++|.|+++|||+++++||++|++++ .++|+++++++|+++.+.
T Consensus 273 ~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 273 MAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999998 589999999999998865
No 6
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.88 E-value=1.2e-22 Score=159.00 Aligned_cols=122 Identities=33% Similarity=0.616 Sum_probs=98.3
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCC-CCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHc
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVE-SLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKH 79 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~ 79 (164)
++||++++..+.+++++|+++||++++|+||++|+|++++... ..+....+.. .....+.+.++++++
T Consensus 160 ~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~a~~~ 228 (283)
T PF00248_consen 160 INYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRD-----------AQELADALRELAEEH 228 (283)
T ss_dssp EE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSST-----------HGGGHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccCccccccccCCCcccccccch-----------hhhhhhhhhhhhhhc
Confidence 4699997777789999999999999999999999999884332 2222111100 344557899999999
Q ss_pred CCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhC
Q 031174 80 KCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAV 133 (164)
Q Consensus 80 g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 133 (164)
|+|++|+||+|+++++.+.++|+|+++++|+++|+++++++||++++++|+++.
T Consensus 229 g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 229 GVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp TSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred ccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999864
No 7
>PLN02587 L-galactose dehydrogenase
Probab=99.88 E-value=3.9e-22 Score=158.91 Aligned_cols=120 Identities=18% Similarity=0.347 Sum_probs=100.8
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcC
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHK 80 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 80 (164)
++||++++..+ +++++|+++||++++|+||++|+|+++.... +.+ ..+...++++.++++|+++|
T Consensus 178 ~~~~l~~~~~~-~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~~~-~~~~~~~~~~~l~~~a~~~~ 242 (314)
T PLN02587 178 CHYSLNDSSLE-DLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------WHP-APPELKSACAAAATHCKEKG 242 (314)
T ss_pred cccCcchhhHH-HHHHHHHHcCceEEEechhhccccCCCCCCC-------------CCC-CCHHHHHHHHHHHHHHHHhC
Confidence 36788777554 8999999999999999999999999873111 100 11345667788999999999
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccC----CcCCHHHHHHHHhhCCC
Q 031174 81 CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLA----LKLTKEDLKEIADAVPI 135 (164)
Q Consensus 81 ~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~----~~Lt~e~~~~l~~~~~~ 135 (164)
+|++|+||+|++++|.|+++|+|+++++||++|++++. .+|+++++++|+++...
T Consensus 243 ~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 243 KNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred CCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999975 37999999999998864
No 8
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=99.87 E-value=6.1e-22 Score=153.96 Aligned_cols=103 Identities=31% Similarity=0.584 Sum_probs=93.2
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccc-cCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHc
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGF-FAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKH 79 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~-Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~ 79 (164)
|+||++.++.| ++++|+++||.++|||||++|. +-. . +.+++||++|
T Consensus 164 Ie~hp~~~q~e--l~~~~~~~gI~v~AysPL~~g~~l~~---------------~---------------~~l~~Ia~k~ 211 (280)
T COG0656 164 IEYHPYLRQPE--LLPFCQRHGIAVEAYSPLAKGGKLLD---------------N---------------PVLAEIAKKY 211 (280)
T ss_pred EEeccCCCcHH--HHHHHHHcCCEEEEECCccccccccc---------------C---------------hHHHHHHHHh
Confidence 68999999955 9999999999999999999753 111 1 4899999999
Q ss_pred CCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCCCc
Q 031174 80 KCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPIQE 137 (164)
Q Consensus 80 g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~ 137 (164)
|.|++|++|+|+++++ .++||.+++++|+++|++++++.||++|++.|+++.....
T Consensus 212 g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 212 GKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred CCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 9999999999999999 8999999999999999999999999999999999988653
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.85 E-value=9.4e-21 Score=147.87 Aligned_cols=101 Identities=33% Similarity=0.497 Sum_probs=90.4
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcC
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHK 80 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 80 (164)
++||++++. .+++++|+++||++++|+||++|.+... +.++++|+++|
T Consensus 153 ~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~------------------------------~~l~~~a~~~~ 200 (267)
T PRK11172 153 IELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD------------------------------PVIARIAAKHN 200 (267)
T ss_pred eecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC------------------------------HHHHHHHHHhC
Confidence 478999886 5899999999999999999998854310 36889999999
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCC
Q 031174 81 CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPI 135 (164)
Q Consensus 81 ~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 135 (164)
+|++|+||+|+++++ .++|+|+++++|+++|+++++++||++++++|+++.++
T Consensus 201 ~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 201 ATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred CCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 999999999999997 57999999999999999999999999999999998765
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.84 E-value=3.3e-20 Score=145.37 Aligned_cols=114 Identities=39% Similarity=0.749 Sum_probs=98.2
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcC
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHK 80 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 80 (164)
++||++++..+.+++++|+++||++++|+||++|.|+++......+. . ......+..++++++
T Consensus 171 ~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~-----------~------~~~~~~~~~~~~~~~ 233 (285)
T cd06660 171 VEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP-----------E------GDLLEALKEIAEKHG 233 (285)
T ss_pred cccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC-----------h------hhHHHHHHHHHHHhC
Confidence 57999999876689999999999999999999999987632211111 0 013467899999999
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHh
Q 031174 81 CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIAD 131 (164)
Q Consensus 81 ~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~ 131 (164)
++++|+||+|++++|.+.++|+|+++++||++|+++..++|++++++.|++
T Consensus 234 ~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 234 VTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred CCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999988999999999975
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.83 E-value=1.8e-20 Score=148.08 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=95.5
Q ss_pred Ccccccccchh-hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHc
Q 031174 1 MEWSLWTRDIE-EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKH 79 (164)
Q Consensus 1 v~ynll~r~~e-~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~ 79 (164)
++||+++|+.+ .+++++|+++||++++|+||++|+|++... ..+ .. +.+....+..+++++.++
T Consensus 163 ~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~--------~~-----~~~~~~~~~~~~~~~~~~ 227 (292)
T PRK14863 163 APASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP--------AQ-----LKGASGRLSRVRRMIAEG 227 (292)
T ss_pred ecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc--------cc-----hhhhhHHHHHHHHHHHHc
Confidence 57999999754 579999999999999999999999975311 000 01 112235566788888899
Q ss_pred CCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHh
Q 031174 80 KCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIAD 131 (164)
Q Consensus 80 g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~ 131 (164)
++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.++++..+.+|..
T Consensus 228 ~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 228 RSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 9999999999999999999999999999999999999998999988877753
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=99.81 E-value=1.5e-19 Score=142.60 Aligned_cols=103 Identities=29% Similarity=0.493 Sum_probs=89.9
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcC
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHK 80 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 80 (164)
++||+++|.. .+++++|+++||++++|+||+++. . + ..+.++++|+++|
T Consensus 186 ~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~----~----------------~----------~~~~l~~ia~~~~ 234 (290)
T PRK10376 186 NHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFT----P----------------L----------QSSTLSDVAASLG 234 (290)
T ss_pred cccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCC----h----------------h----------hhHHHHHHHHHhC
Confidence 4899999875 479999999999999999997321 0 0 0147899999999
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCC
Q 031174 81 CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVP 134 (164)
Q Consensus 81 ~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 134 (164)
+|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 235 ~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 235 ATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred CCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999997778899999999999999999999999999999998754
No 13
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=141.63 Aligned_cols=107 Identities=30% Similarity=0.532 Sum_probs=92.5
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcC
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHK 80 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 80 (164)
||+|+..++ .+++++|+++||.+.|||||+++-- +. . .... +.+++||++||
T Consensus 182 vE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~~----~------ll~~---------------~~l~~iA~K~~ 233 (300)
T KOG1577|consen 182 VECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-GS----D------LLED---------------PVLKEIAKKYN 233 (300)
T ss_pred eeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-cc----c------cccC---------------HHHHHHHHHhC
Confidence 578888887 5799999999999999999997731 00 0 1111 48999999999
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCCCc
Q 031174 81 CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPIQE 137 (164)
Q Consensus 81 ~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~~ 137 (164)
.|++|++|||.++++ ++|||.+++++||+||++.+++.||++|++.|+......+
T Consensus 234 kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 234 KTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred CCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 999999999999999 9999999999999999999999999999999998777654
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.80 E-value=3.3e-19 Score=139.70 Aligned_cols=104 Identities=26% Similarity=0.403 Sum_probs=88.8
Q ss_pred CcccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcC
Q 031174 1 MEWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHK 80 (164)
Q Consensus 1 v~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g 80 (164)
++||++.+. .+++++|+++||++++|+||++|. +. .|. .+.|+++|+++|
T Consensus 161 ~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~---~~---------------~~~----------~~~l~~ia~~~g 210 (275)
T PRK11565 161 IELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG---KG---------------VFD----------QKVIRDLADKYG 210 (275)
T ss_pred eecCCccch--HHHHHHHHHCCCEEEEEccCCCCC---cc---------------ccc----------CHHHHHHHHHhC
Confidence 367888775 579999999999999999999773 10 000 047899999999
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCCC
Q 031174 81 CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPIQ 136 (164)
Q Consensus 81 ~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 136 (164)
+|++|+||+|+++++ .++|+|+++++|+++|+++++++|+++++++|+++....
T Consensus 211 ~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 211 KTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred CCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 999999999999997 469999999999999999999999999999999987643
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=125.72 Aligned_cols=113 Identities=26% Similarity=0.467 Sum_probs=96.8
Q ss_pred Ccccccccc-hhhhHHHHHHHhCCeEeeccccccc-ccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHH
Q 031174 1 MEWSLWTRD-IEEEIVPLCRELGIGIVPYSPIGRG-FFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKK 78 (164)
Q Consensus 1 v~ynll~r~-~e~~~l~~~~~~gi~v~a~spLa~G-~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~ 78 (164)
+|.|+++.. +.++.+++|+++.|..+|||||++| +|+|. ++...+.+.|..||++
T Consensus 180 lelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~-----------------------~~~q~l~~~l~~ia~e 236 (298)
T COG4989 180 LELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD-----------------------DKFQRLRKVLDRIAEE 236 (298)
T ss_pred eeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------------cchHHHHHHHHHHHHH
Confidence 467888876 5689999999999999999999987 33331 1223344689999999
Q ss_pred cC-CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCCC
Q 031174 79 HK-CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPIQ 136 (164)
Q Consensus 79 ~g-~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 136 (164)
+| +|..+++++|++.+|.-..||+|+.+++++++.++|+++.||.++|-+|..+...+
T Consensus 237 ~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G~ 295 (298)
T COG4989 237 YGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIGN 295 (298)
T ss_pred hCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhccC
Confidence 99 79999999999999999999999999999999999999999999999998876543
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.52 E-value=6.6e-14 Score=111.38 Aligned_cols=106 Identities=19% Similarity=0.362 Sum_probs=90.2
Q ss_pred Ccccccccchh--hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHH
Q 031174 1 MEWSLWTRDIE--EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKK 78 (164)
Q Consensus 1 v~ynll~r~~e--~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~ 78 (164)
++||.+++... .+-+++|.++|++|+.++|+.+|-|...- | +++++|+++
T Consensus 173 lq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v--------------P--------------~~~~~l~~~ 224 (391)
T COG1453 173 LQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV--------------P--------------EKLEELCRP 224 (391)
T ss_pred eeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC--------------C--------------HHHHHHHHh
Confidence 58999998744 48999999999999999999998655321 1 488999999
Q ss_pred cC--CCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCC---cCCHHHHHHHHhhCC
Q 031174 79 HK--CTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLAL---KLTKEDLKEIADAVP 134 (164)
Q Consensus 79 ~g--~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~---~Lt~e~~~~l~~~~~ 134 (164)
.+ .||+..|+||+++||.|++++.|+++++|++||++.++- +||+++++.|..+.+
T Consensus 225 ~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~ 285 (391)
T COG1453 225 ASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEE 285 (391)
T ss_pred cCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHH
Confidence 86 479999999999999999999999999999999998754 399999887776654
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.44 E-value=6.2e-13 Score=102.03 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=93.3
Q ss_pred cccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCC
Q 031174 2 EWSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKC 81 (164)
Q Consensus 2 ~ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 81 (164)
+|++.+.... ..+++.+..|++|+.-++|+.|+|+.+..+...|. .++..+..++-.++|++.|+
T Consensus 204 ry~l~d~tLl-~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa--------------S~Elk~~a~~aa~~Cq~rnv 268 (342)
T KOG1576|consen 204 RYTLNDNTLL-RYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA--------------SDELKEAAKAAAEYCQSRNV 268 (342)
T ss_pred hhccccHHHH-HHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC--------------CHHHHHHHHHHHHHHHHcCc
Confidence 5777666654 78899999999999999999999998755555444 24667777888999999999
Q ss_pred CHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHH
Q 031174 82 TPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKED 125 (164)
Q Consensus 82 s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~ 125 (164)
+.+.+|+.|.++.++++++++|+++.++++.|+++....||..+
T Consensus 269 ~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~ 312 (342)
T KOG1576|consen 269 ELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKH 312 (342)
T ss_pred cHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999998766787733
No 18
>PRK06424 transcription factor; Provisional
Probab=77.99 E-value=14 Score=26.29 Aligned_cols=109 Identities=10% Similarity=0.095 Sum_probs=54.3
Q ss_pred hhhHHHHHHHhCCeEeec---ccccc--cccCCCCC--CCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCCH
Q 031174 11 EEEIVPLCRELGIGIVPY---SPIGR--GFFAGKAV--VESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCTP 83 (164)
Q Consensus 11 e~~~l~~~~~~gi~v~a~---spLa~--G~Ltg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 83 (164)
+..+=+-|.+.|..+..+ +|... -.-+.... .........+.. ..+.+...+......+.|+.+-++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYK-KKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCcc-CcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 457888899999999998 56543 11110000 000000000111 11122222333445566778888899999
Q ss_pred HHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCC
Q 031174 84 AQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVP 134 (164)
Q Consensus 84 ~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 134 (164)
.+||-+--.+.. +..++ +......+.+.+..|...+.
T Consensus 101 ~eLA~~iGvs~s----------tIski----E~G~~~Ps~~~l~kLa~~Lg 137 (144)
T PRK06424 101 ADLAAKIFERKN----------VIASI----ERGDLLPDIKTARKLEKILG 137 (144)
T ss_pred HHHHHHhCCCHH----------HHHHH----HCCCCCCCHHHHHHHHHHhC
Confidence 988865333222 22222 22233456666666666554
No 19
>PF14502 HTH_41: Helix-turn-helix domain
Probab=74.05 E-value=3.5 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCC--HHHHHHHHHHcCCCcee
Q 031174 70 IRIDNLAKKHKCT--PAQLALAWILQQGDDVI 99 (164)
Q Consensus 70 ~~l~~ia~~~g~s--~~qlaL~w~l~~~~v~~ 99 (164)
+.+.+++++++++ ..|-||+++-....|..
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEEe
Confidence 4688899999988 69999999999886543
No 20
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=72.41 E-value=3.8 Score=28.65 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHhCCeEeeccccc
Q 031174 8 RDIEEEIVPLCRELGIGIVPYSPIG 32 (164)
Q Consensus 8 r~~e~~~l~~~~~~gi~v~a~spLa 32 (164)
+++..++++.|++.||.+++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 5666799999999999999998886
No 21
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=67.12 E-value=13 Score=22.31 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCHHHHH
Q 031174 71 RIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qla 87 (164)
.+++||+++|++..+|.
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 57899999999998875
No 22
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=63.71 E-value=12 Score=19.71 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCCHHHHH
Q 031174 68 IYIRIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 68 ~~~~l~~ia~~~g~s~~qla 87 (164)
..+.+.++|++.|.|.+++.
T Consensus 10 ~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHH
Confidence 34689999999999988764
No 23
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=63.30 E-value=7.4 Score=21.93 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccC
Q 031174 72 IDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLA 118 (164)
Q Consensus 72 l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~ 118 (164)
|++||+..|+|.+.+.. +++.+ .-+...+.+++.+.++.+.
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~----~~vs~~tr~rI~~~a~~lg 42 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGP----PRVSEETRERILEAAEELG 42 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTC----SSSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHH--HHhCC----CCCCHHHHHHHHHHHHHHC
Confidence 67899999999987764 44444 2345566677766665543
No 24
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=62.11 E-value=29 Score=26.73 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=36.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCT 82 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 82 (164)
+++.+|++.-|-..+...||..|-..+. ....+.....+++|+.|.+++|++
T Consensus 86 ~~la~yA~acGA~aLvlcPlNd~s~~~~-------------------~vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 86 RGLADYAAACGAKALVLCPLNDGSWPGT-------------------AVRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred HHHHHHHHhcCCceEEEEeccCCCCCCc-------------------ccchHHHHHHHHHhhHHHHHhCcc
Confidence 6788888888888888888876532211 011345667788999999999874
No 25
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=61.56 E-value=33 Score=29.89 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=20.8
Q ss_pred cccccchhhhHHHHHHHhCCeEeecccccccc
Q 031174 4 SLWTRDIEEEIVPLCRELGIGIVPYSPIGRGF 35 (164)
Q Consensus 4 nll~r~~e~~~l~~~~~~gi~v~a~spLa~G~ 35 (164)
|+|...++ +++++|++++|.+ +|+-|+
T Consensus 352 NplYe~FD-~ileI~k~YDVtl----SLGDGL 378 (607)
T PRK09284 352 NFLYTHFE-EICEIMAAYDVSF----SLGDGL 378 (607)
T ss_pred CcHHHHHH-HHHHHHHHhCeee----eccCCc
Confidence 44555554 8999999999998 677676
No 26
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=60.65 E-value=32 Score=23.34 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCCC
Q 031174 68 IYIRIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPIQ 136 (164)
Q Consensus 68 ~~~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~~ 136 (164)
.+..+.+...+++.+..++|. .+=...++.+++..-+..++-++++++++.|-......
T Consensus 56 ~i~~~~~~L~~~~L~k~E~~~----------i~Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~~~ 114 (118)
T smart00657 56 IVRAVRTLLKSKKLHKFEIAQ----------LGNLRPETAEEAQLLIPSLEERIDEEELEELLDDLSSL 114 (118)
T ss_pred HHHHHHHHHHhcCCCHHHHHH----------HhCCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHHHh
Confidence 344555666678888877762 22246778999999999888789999998887765543
No 27
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=59.79 E-value=45 Score=25.80 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=20.0
Q ss_pred HHHHHHcCCCceeecCCCCCHHHHHHhHhcc
Q 031174 87 ALAWILQQGDDVIPIPGTSKIKNLDDNIGSL 117 (164)
Q Consensus 87 aL~w~l~~~~v~~~I~G~~~~~~l~enl~a~ 117 (164)
.|+.+.+.+-....-.|+++.+++++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 4566666655577788999999999988776
No 28
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=58.31 E-value=16 Score=22.10 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 031174 71 RIDNLAKKHKCTPAQLALAWIL 92 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qlaL~w~l 92 (164)
...+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 3567999999999999999984
No 29
>PLN02444 HMP-P synthase
Probab=56.95 E-value=43 Score=29.31 Aligned_cols=27 Identities=22% Similarity=0.617 Sum_probs=20.9
Q ss_pred cccccchhhhHHHHHHHhCCeEeecccccccc
Q 031174 4 SLWTRDIEEEIVPLCRELGIGIVPYSPIGRGF 35 (164)
Q Consensus 4 nll~r~~e~~~l~~~~~~gi~v~a~spLa~G~ 35 (164)
|+|...++ +++++|++++|.+ .|+-|+
T Consensus 357 NPlYe~FD-~ileI~k~YDVtl----SLGDGL 383 (642)
T PLN02444 357 NFAYEHWD-DILDICNQYDIAL----SIGDGL 383 (642)
T ss_pred CchHHHHH-HHHHHHHHhCeee----eccCCc
Confidence 45555554 8999999999998 677676
No 30
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=56.58 E-value=44 Score=29.57 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=52.3
Q ss_pred hhHHHHHHHhCCeEeecc---cccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHH-HHHHHHcCCCH----
Q 031174 12 EEIVPLCRELGIGIVPYS---PIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRI-DNLAKKHKCTP---- 83 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~s---pLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ia~~~g~s~---- 83 (164)
..+..+|++++|.++.-+ ||..|+-. . .++.--|-|.+......++..+.. +.++.+||++.
T Consensus 58 ~ala~f~~e~~I~lVvvGPE~PL~~Gl~~-~---------l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~ 127 (788)
T KOG0237|consen 58 EALASFCKEHNINLVVVGPELPLVAGLAD-V---------LRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYK 127 (788)
T ss_pred HHHHHHHHHcceeEEEECCchhhhhhhhh-h---------hhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCcceee
Confidence 378999999999999766 57777522 1 112223556666556666666664 68889999864
Q ss_pred ----HHHHHHHHHcCCC
Q 031174 84 ----AQLALAWILQQGD 96 (164)
Q Consensus 84 ----~qlaL~w~l~~~~ 96 (164)
.+-|-.|+.+++.
T Consensus 128 ~ft~~e~a~sfi~~~~~ 144 (788)
T KOG0237|consen 128 TFTDPEEAKSFIQSATD 144 (788)
T ss_pred eeCCHHHHHHHHHhCCC
Confidence 5679999999984
No 31
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=55.55 E-value=34 Score=27.83 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.7
Q ss_pred hhHHHHHHHhCCeEeeccccccc
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRG 34 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G 34 (164)
..++++|++.||.++. ||+...
T Consensus 93 ~~Lke~a~~~Gi~~~S-SPfd~~ 114 (347)
T COG2089 93 AQLKEYARKRGIIFFS-SPFDLT 114 (347)
T ss_pred HHHHHHHHHcCeEEEe-cCCCHH
Confidence 5799999999998876 676643
No 32
>PRK06298 type III secretion system protein; Validated
Probab=54.72 E-value=15 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=23.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.++++||+++..-|||+.+..
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy~ 318 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLLD 318 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 57899999999999999999998753
No 33
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=53.66 E-value=59 Score=27.27 Aligned_cols=27 Identities=15% Similarity=0.492 Sum_probs=21.1
Q ss_pred cccccchhhhHHHHHHHhCCeEeecccccccc
Q 031174 4 SLWTRDIEEEIVPLCRELGIGIVPYSPIGRGF 35 (164)
Q Consensus 4 nll~r~~e~~~l~~~~~~gi~v~a~spLa~G~ 35 (164)
|+|...++ .+++.|+++++.+ +|+-|+
T Consensus 199 NPlye~fD-~lLeI~~~yDVtl----SLGDgl 225 (423)
T TIGR00190 199 NPLYKNFD-YILEIAKEYDVTL----SLGDGL 225 (423)
T ss_pred CchHHHHH-HHHHHHHHhCeee----eccCCc
Confidence 55555564 8999999999998 677666
No 34
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=52.67 E-value=25 Score=22.46 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred hhHHHHHHHhCCeEeeccccccccc
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFF 36 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~L 36 (164)
..+.+.++++||.++--.+|+.-+.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 5789999999999999999998775
No 35
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.27 E-value=39 Score=22.21 Aligned_cols=29 Identities=24% Similarity=0.124 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 031174 63 EKNKNIYIRIDNLAKKHKCTPAQLALAWI 91 (164)
Q Consensus 63 ~~~~~~~~~l~~ia~~~g~s~~qlaL~w~ 91 (164)
+.|.++...+.+||++.|+|+.++.-.|.
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a 72 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAA 72 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788888999999999999988776554
No 36
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.71 E-value=65 Score=27.11 Aligned_cols=27 Identities=11% Similarity=0.402 Sum_probs=21.3
Q ss_pred cccccchhhhHHHHHHHhCCeEeecccccccc
Q 031174 4 SLWTRDIEEEIVPLCRELGIGIVPYSPIGRGF 35 (164)
Q Consensus 4 nll~r~~e~~~l~~~~~~gi~v~a~spLa~G~ 35 (164)
|+|...++ .+++.|+++++.+ +|+-|+
T Consensus 202 NPlye~fD-~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 202 NPLYEHFD-YLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred CchHHHHH-HHHHHHHHhCeee----eccCCc
Confidence 55565664 8999999999998 677666
No 37
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=50.45 E-value=53 Score=20.94 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 031174 63 EKNKNIYIRIDNLAKKHKCTPAQLALAW 90 (164)
Q Consensus 63 ~~~~~~~~~l~~ia~~~g~s~~qlaL~w 90 (164)
++..+.+..|.++|++.|++..+++.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5677889999999999999999986543
No 38
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=49.97 E-value=19 Score=29.64 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.+++|||+++-.-|||+.+..
T Consensus 301 ~~Ir~~A~e~~VPiven~pLARaLy~ 326 (358)
T PRK13109 301 LKIREIAEENGIPVIEDKPLARSLYD 326 (358)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 57889999999999999999998754
No 39
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=49.66 E-value=26 Score=21.21 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Q 031174 70 IRIDNLAKKHKCTPAQLALAWILQQ 94 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~l~~ 94 (164)
..+.++|.++|+++.+ ..+|.-..
T Consensus 24 ~sv~~va~~~gi~~~~-l~~W~~~~ 47 (76)
T PF01527_consen 24 ESVSEVAREYGISPST-LYNWRKQY 47 (76)
T ss_dssp CHHHHHHHHHTS-HHH-HHHHHHHH
T ss_pred CceEeeeccccccccc-ccHHHHHH
Confidence 4578999999997766 56888776
No 40
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=48.27 E-value=43 Score=18.35 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=10.0
Q ss_pred HHHHHHHcCCCHHHH
Q 031174 72 IDNLAKKHKCTPAQL 86 (164)
Q Consensus 72 l~~ia~~~g~s~~ql 86 (164)
+.+||+.+|+|.+.+
T Consensus 24 i~~IA~~~gvsr~Tv 38 (45)
T PF02796_consen 24 IAEIAKQFGVSRSTV 38 (45)
T ss_dssp HHHHHHHTTS-HHHH
T ss_pred HHHHHHHHCcCHHHH
Confidence 577888888876653
No 41
>PRK08227 autoinducer 2 aldolase; Validated
Probab=46.92 E-value=1e+02 Score=24.21 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=42.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCCH-----HHH
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCTP-----AQL 86 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~-----~ql 86 (164)
-.+.+.|+++|++++++.|-+..+ .. -.+.+.....+|.+.|.+. +.-
T Consensus 130 ~~v~~ea~~~G~Plla~~prG~~~-~~--------------------------~~~~ia~aaRiaaELGADiVK~~y~~~ 182 (264)
T PRK08227 130 IQLVDAGLRYGMPVMAVTAVGKDM-VR--------------------------DARYFSLATRIAAEMGAQIIKTYYVEE 182 (264)
T ss_pred HHHHHHHHHhCCcEEEEecCCCCc-Cc--------------------------hHHHHHHHHHHHHHHcCCEEecCCCHH
Confidence 367789999999999977665322 00 0013345566777777431 224
Q ss_pred HHHHHHcCCCceeecCCCCCH
Q 031174 87 ALAWILQQGDDVIPIPGTSKI 107 (164)
Q Consensus 87 aL~w~l~~~~v~~~I~G~~~~ 107 (164)
.++.+.....+-++|.|..+.
T Consensus 183 ~f~~vv~a~~vPVviaGG~k~ 203 (264)
T PRK08227 183 GFERITAGCPVPIVIAGGKKL 203 (264)
T ss_pred HHHHHHHcCCCcEEEeCCCCC
Confidence 566666666666777776653
No 42
>PF13518 HTH_28: Helix-turn-helix domain
Probab=46.72 E-value=26 Score=19.34 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Q 031174 71 RIDNLAKKHKCTPAQLALAWILQ 93 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qlaL~w~l~ 93 (164)
.+.++|.++|+|..++ -+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4566788888877665 666644
No 43
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=46.71 E-value=23 Score=28.93 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.++++||+++---|||+.+..
T Consensus 291 ~~Ir~iA~e~~VPiven~pLAR~Ly~ 316 (342)
T TIGR01404 291 LAVRAYAEEAGIPVVRDIPLARQLYR 316 (342)
T ss_pred HHHHHHHHHcCCCEeeCHHHHHHHHH
Confidence 57889999999999999999998754
No 44
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=46.61 E-value=23 Score=29.01 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=23.2
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.++++||+++---|||+.+..
T Consensus 292 ~~Ir~iA~e~~VPiven~pLARaLY~ 317 (349)
T PRK12721 292 LHIVKLAERNGIPVVENIPLARALFK 317 (349)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 47899999999999999999988753
No 45
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=46.42 E-value=50 Score=26.81 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=16.1
Q ss_pred hhHHHHHHHhCCeEeeccccc
Q 031174 12 EEIVPLCRELGIGIVPYSPIG 32 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa 32 (164)
..+.++|++.||.+++ +|+.
T Consensus 79 ~~L~~~~~~~Gi~~~s-tpfd 98 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-TPFD 98 (329)
T ss_pred HHHHHHHHHhCCcEEE-EeCC
Confidence 5899999999999986 4443
No 46
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.98 E-value=53 Score=25.21 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=36.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCT 82 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 82 (164)
...+++|+..|...+...|...|.. ....+.++...+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYL-------------------TPPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 4677899999999987766433310 001244567778888999999999874
No 47
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=44.89 E-value=85 Score=24.41 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCC
Q 031174 85 QLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLAL 119 (164)
Q Consensus 85 qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~ 119 (164)
...+..+|..+...+++|-..|.+|.++.+++...
T Consensus 81 ~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 34556677777777888888888888887776655
No 48
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=44.84 E-value=39 Score=18.68 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCCHHHH
Q 031174 67 NIYIRIDNLAKKHKCTPAQL 86 (164)
Q Consensus 67 ~~~~~l~~ia~~~g~s~~ql 86 (164)
+..+.|+.+|++.|++.+.+
T Consensus 12 el~~~L~~ls~~t~i~~S~L 31 (44)
T PF12651_consen 12 ELYEKLKELSEETGIPKSKL 31 (44)
T ss_pred HHHHHHHHHHHHHCCCHHHH
Confidence 44578999999999987765
No 49
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.69 E-value=27 Score=30.83 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.++++||+++---|||+.+..
T Consensus 591 lrIReiAeE~gVPIVENpPLARALY~ 616 (646)
T PRK12773 591 LLIIRIARENGVPTVEDRLQARGLYE 616 (646)
T ss_pred HHHHHHHHHcCCcEEECHHHHHHHHH
Confidence 57899999999999999999998754
No 50
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=42.53 E-value=68 Score=23.81 Aligned_cols=72 Identities=18% Similarity=0.074 Sum_probs=45.8
Q ss_pred hHHHHHHHhCCeEee-cccccccccCCC-CCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 031174 13 EIVPLCRELGIGIVP-YSPIGRGFFAGK-AVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCTPAQLALAW 90 (164)
Q Consensus 13 ~~l~~~~~~gi~v~a-~spLa~G~Ltg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlaL~w 90 (164)
+--+..+++||-+++ +..-++|+..+- .+....+. -.....+...+.+.++-+.++++++++.+.|..-
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~---------~~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEA---------RVLAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHH---------HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455677899999998 777777776543 11110000 0012234456677777888999999999988776
Q ss_pred HHc
Q 031174 91 ILQ 93 (164)
Q Consensus 91 ~l~ 93 (164)
.+.
T Consensus 194 a~~ 196 (200)
T cd01075 194 AEE 196 (200)
T ss_pred HHH
Confidence 654
No 51
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=40.40 E-value=36 Score=18.96 Aligned_cols=21 Identities=24% Similarity=0.026 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 031174 70 IRIDNLAKKHKCTPAQLALAW 90 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w 90 (164)
+.++.+.++.|++..++|-..
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 356666667777777776443
No 52
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=39.99 E-value=34 Score=26.30 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH---HcCCCceeecCCCCCHHHHHHhHh
Q 031174 66 KNIYIRIDNLAKKHKCTPAQLALAWI---LQQGDDVIPIPGTSKIKNLDDNIG 115 (164)
Q Consensus 66 ~~~~~~l~~ia~~~g~s~~qlaL~w~---l~~~~v~~~I~G~~~~~~l~enl~ 115 (164)
-+++.++..||.-|++++.+++..|- +.+..- ..-+...+.+++++.++
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~lq 60 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQYLQ 60 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTTTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHHHH
Confidence 45678999999999999999999984 333321 12255556666665554
No 53
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=39.61 E-value=35 Score=28.41 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.++++||+++---|||+.+..
T Consensus 299 ~~Ir~~A~e~~VPiven~pLARaLy~ 324 (386)
T PRK12468 299 LRIRELGAEHRIPLLEAPPLARALFR 324 (386)
T ss_pred HHHHHHHHHcCCcEEeCHHHHHHHHH
Confidence 57899999999999999999998754
No 54
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.15 E-value=1.4e+02 Score=23.64 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=15.4
Q ss_pred hhHHHHHHHhCCeEeeccccc
Q 031174 12 EEIVPLCRELGIGIVPYSPIG 32 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa 32 (164)
.++.++|+++||..+...+-.
T Consensus 137 ~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 137 DELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred HHHHHHHHHcCCcEEEEeCCC
Confidence 568888888988887655443
No 55
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=38.57 E-value=35 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=23.3
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.+++|||+++-.-|||+.+..
T Consensus 555 ~~Ir~~A~e~~VPive~~~LAR~Ly~ 580 (609)
T PRK12772 555 LKIKEIAKENDVPIIENKPLARLIYK 580 (609)
T ss_pred HHHHHHHHHCCCcEEeCHHHHHHHHH
Confidence 57899999999999999999998754
No 56
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=38.20 E-value=66 Score=20.59 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Q 031174 68 IYIRIDNLAKKHKCTPAQLALAWIL 92 (164)
Q Consensus 68 ~~~~l~~ia~~~g~s~~qlaL~w~l 92 (164)
+-+.|..+|.+.|+|.+++.=+++.
T Consensus 52 ~K~~L~~lc~~~GlTQae~IE~LI~ 76 (84)
T PF10723_consen 52 LKERLEELCKEQGLTQAEMIERLIK 76 (84)
T ss_dssp HHHHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3468999999999999998766554
No 57
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=37.04 E-value=1.7e+02 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.489 Sum_probs=20.6
Q ss_pred cccccchhhhHHHHHHHhCCeEeecccccccc
Q 031174 4 SLWTRDIEEEIVPLCRELGIGIVPYSPIGRGF 35 (164)
Q Consensus 4 nll~r~~e~~~l~~~~~~gi~v~a~spLa~G~ 35 (164)
|+|...++ ++++.|+++++.+ +|+-|+
T Consensus 200 Nply~~fd-~lleI~k~yDvtl----SLGDgl 226 (432)
T COG0422 200 NPLYEHFD-ELLEIFKEYDVTL----SLGDGL 226 (432)
T ss_pred CchhhhHH-HHHHHHHHhCeee----eccCCC
Confidence 45555564 8999999999998 566665
No 58
>PRK08156 type III secretion system protein SpaS; Validated
Probab=36.85 E-value=39 Score=27.85 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=23.1
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.++++||+++---|||+.+..
T Consensus 287 ~~IreiA~e~~VPiven~pLARaLY~ 312 (361)
T PRK08156 287 LAVRAYAEKVGVPVVRDIKLARRLYK 312 (361)
T ss_pred HHHHHHHHHCCCCEeeCHHHHHHHHH
Confidence 47889999999999999999988753
No 59
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.79 E-value=98 Score=22.02 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.8
Q ss_pred cccchhhhHHHHHHHhCCeEeecccccccc
Q 031174 6 WTRDIEEEIVPLCRELGIGIVPYSPIGRGF 35 (164)
Q Consensus 6 l~r~~e~~~l~~~~~~gi~v~a~spLa~G~ 35 (164)
+.+..+ +.+..+.++++.++.-|.|.+|.
T Consensus 48 ~~~tp~-e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 48 LFQTPE-EAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred CcCCHH-HHHHHHHhcCCCEEEEEeccchH
Confidence 344454 89999999999999999999775
No 60
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=36.57 E-value=46 Score=23.18 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=31.7
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCCHH
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCTPA 84 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 84 (164)
.-+++.|++.|+.++--.+--.|.+.. |.+-..+...+..+.++.+|+++|...+
T Consensus 39 ~l~L~~~k~~g~~~lfVi~PvNg~wyd------------------ytG~~~~~r~~~y~kI~~~~~~~gf~v~ 93 (130)
T PF04914_consen 39 QLLLDVCKELGIDVLFVIQPVNGKWYD------------------YTGLSKEMRQEYYKKIKYQLKSQGFNVA 93 (130)
T ss_dssp HHHHHHHHHTT-EEEEEE----HHHHH------------------HTT--HHHHHHHHHHHHHHHHTTT--EE
T ss_pred HHHHHHHHHcCCceEEEecCCcHHHHH------------------HhCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 468999999999887555554453221 1111234556677889999999987543
No 61
>PRK09108 type III secretion system protein HrcU; Validated
Probab=36.36 E-value=49 Score=27.14 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=23.1
Q ss_pred hhHHHHHHHhCCeEeeccccccccc
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFF 36 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~L 36 (164)
..+.+.++++||+++---|||+.+.
T Consensus 294 ~~Ir~~A~e~~VPvven~pLARaLy 318 (353)
T PRK09108 294 LALRRHAHALGIPIVGNPPVARALY 318 (353)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHh
Confidence 5789999999999999999999886
No 62
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=36.09 E-value=40 Score=22.56 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCC
Q 031174 69 YIRIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAVP 134 (164)
Q Consensus 69 ~~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 134 (164)
++.+.+...++|++..+++ .-+- ...++...+..-+..++..+++++++.|-.+..
T Consensus 59 ~~~l~~~L~~~~L~~~E~~-qi~N---------l~P~~~~El~~ii~~~~~r~~ee~l~~iL~~v~ 114 (117)
T PF03874_consen 59 IKELREELKKFGLTEFEIL-QIIN---------LRPTTAVELRAIIESLESRFSEEDLEEILDLVS 114 (117)
T ss_dssp HHHHHHHHTTSTS-HHHHH-HHHH---------H--SSHHHHHHHSTTGTTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHH-HHhc---------CCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3445555556777766653 2122 244688999988888888899999988766543
No 63
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=34.40 E-value=64 Score=23.45 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=28.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCC
Q 031174 72 IDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTS 105 (164)
Q Consensus 72 l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~ 105 (164)
+.+||++.|...+.-|...++....+..+||+-+
T Consensus 108 Y~eiA~~ig~p~a~rAVG~A~~~NPl~IiIPCHR 141 (168)
T COG0350 108 YGEIARRLGRPTAVRAVGNANGANPLPIIIPCHR 141 (168)
T ss_pred HHHHHHHhCCCcHHHHHHHHhccCCceEEecCeE
Confidence 3689999998777778999999998899888754
No 64
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.39 E-value=1.8e+02 Score=22.19 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=34.8
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCCH
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCTP 83 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 83 (164)
.++.+.++++|+.+.++.|...+.-.+-. . -.+..++..++.++..-++|+..|+..
T Consensus 50 ~~l~~~~~~~gl~v~s~~~~~~~~~~~~~-------------~--~~~~~r~~~~~~~~~~i~~a~~lGa~~ 106 (275)
T PRK09856 50 KQIKALAQTYQMPIIGYTPETNGYPYNMM-------------L--GDEHMRRESLDMIKLAMDMAKEMNAGY 106 (275)
T ss_pred HHHHHHHHHcCCeEEEecCcccCcCcccc-------------C--CCHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 46778888999999888775533200000 0 012234556677777778888887753
No 65
>PRK11675 LexA regulated protein; Provisional
Probab=33.97 E-value=62 Score=21.14 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Q 031174 67 NIYIRIDNLAKKHKCTPAQLALA 89 (164)
Q Consensus 67 ~~~~~l~~ia~~~g~s~~qlaL~ 89 (164)
+..+.|.++|++.|+|.+++.-.
T Consensus 60 dl~ekL~eyAe~~nitRSElIr~ 82 (90)
T PRK11675 60 DLVDALNELAEARNISRSELIEE 82 (90)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 67788999999999999886543
No 66
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=32.97 E-value=1.7e+02 Score=23.14 Aligned_cols=54 Identities=24% Similarity=0.137 Sum_probs=31.2
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKC 81 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 81 (164)
..++.|+.++||.++-.|+==-.+ ...|.+.-++.+...+.++++.++++++|+
T Consensus 48 ~~~L~~n~~~~I~~yRisS~liP~----------------ashp~~~~~~~~~~~~~l~~iG~~~~~~~i 101 (275)
T PF03851_consen 48 LRILEYNIAHGIRFYRISSDLIPL----------------ASHPEVGWDWEEEFAEELAEIGDLAKENGI 101 (275)
T ss_dssp HHHHHHHHHTT--EEE--TTSSTT----------------TTSTT--S-HHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCEEecCcccCCC----------------CCCcccccchHHHHHHHHHHHHHHHHHcCC
Confidence 478999999999998765321111 112222234456777888888999999876
No 67
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=32.60 E-value=1.9e+02 Score=22.68 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCC
Q 031174 85 QLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLAL 119 (164)
Q Consensus 85 qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~ 119 (164)
...+..+|..+.-.+++|-..|.++.++.+++...
T Consensus 80 ~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 34567788888778888888888888888877765
No 68
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=31.46 E-value=53 Score=27.51 Aligned_cols=27 Identities=11% Similarity=0.465 Sum_probs=17.7
Q ss_pred cccccchhhhHHHHHHHhCCeEeecccccccc
Q 031174 4 SLWTRDIEEEIVPLCRELGIGIVPYSPIGRGF 35 (164)
Q Consensus 4 nll~r~~e~~~l~~~~~~gi~v~a~spLa~G~ 35 (164)
|+|...++ ++++.|+++++.+ +|+-|+
T Consensus 198 NPly~~fD-~lLeI~k~yDVtL----SLGDgl 224 (420)
T PF01964_consen 198 NPLYEHFD-RLLEIAKEYDVTL----SLGDGL 224 (420)
T ss_dssp -HHHHTHH-HHHHHHTTTT-EE----EE--TT
T ss_pred CcHHHhHH-HHHHHHHHhCeeE----eccccc
Confidence 44555554 8999999999999 566665
No 69
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=31.34 E-value=63 Score=22.80 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=32.9
Q ss_pred HHHHHHHcCCC----------------ceeecCCCCCHHHHHHhHhccC-C---cCCHHHHHHHH
Q 031174 86 LALAWILQQGD----------------DVIPIPGTSKIKNLDDNIGSLA-L---KLTKEDLKEIA 130 (164)
Q Consensus 86 laL~w~l~~~~----------------v~~~I~G~~~~~~l~enl~a~~-~---~Lt~e~~~~l~ 130 (164)
+--+|+|.+.. |.+-+.|++..-+|++.+...+ + .+|.+++.++-
T Consensus 83 ~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~RVG~id~~~~g~~~vTlYq~tReel~e~~ 147 (151)
T PF11039_consen 83 LFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARRVGHIDDYFKGVDGVTLYQLTREELEEFL 147 (151)
T ss_pred HHHHHHhcCCceeEEEEecccccccchhHhhhhCCceeeeHHHHhcCCCceEEEEccHHHHHHHH
Confidence 56678887754 4445569999999999887553 2 78998887764
No 70
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=31.25 E-value=1.9e+02 Score=22.39 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCC
Q 031174 85 QLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLAL 119 (164)
Q Consensus 85 qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~ 119 (164)
...++.+|..+...+++|-..|.++.++.+++...
T Consensus 74 ~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 34567777777778888888888888888776655
No 71
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.23 E-value=1.2e+02 Score=24.55 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=15.2
Q ss_pred hhHHHHHHHhCCeEeecccc
Q 031174 12 EEIVPLCRELGIGIVPYSPI 31 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spL 31 (164)
.++.++|++.||.+++ +|+
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpf 98 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPF 98 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccC
Confidence 4788999999999986 344
No 72
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=30.98 E-value=1.6e+02 Score=23.62 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCceeecCCCCCHHHHHHhH
Q 031174 70 IRIDNLAKKHKC------TPAQLALAWILQQGDDVIPIPGTSKIKNLDDNI 114 (164)
Q Consensus 70 ~~l~~ia~~~g~------s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl 114 (164)
.+|.++|++.+. +..+|-..|+.... ..-+..|+|+|+.+-+.+
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 478889988874 57899999996654 456678999999776544
No 73
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=30.44 E-value=11 Score=31.42 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=19.2
Q ss_pred CCccCCCcchHHHhhhhccccCCCCCCCCC
Q 031174 135 IQEVEGDRTYESMKKVSWKLANTPPKDTKA 164 (164)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (164)
..+..|..|++++- || ||+|=|||++|
T Consensus 243 lD~RIG~~fl~aG~--Gy-GGsCfPKD~~A 269 (414)
T COG1004 243 LDPRIGNHFLNAGF--GY-GGSCFPKDTKA 269 (414)
T ss_pred CCchhhHhhCCCCC--CC-CCcCCcHhHHH
Confidence 34556777777766 44 78999999875
No 74
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=30.20 E-value=61 Score=17.13 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 031174 70 IRIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qla 87 (164)
+.+..||+++|++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 367889999999888764
No 75
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=29.61 E-value=67 Score=19.70 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Q 031174 70 IRIDNLAKKHKCTPAQLALAWILQQ 94 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~l~~ 94 (164)
..|++||+..|+|.+++.-..-..+
T Consensus 24 ~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 24 DALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 3789999999999988876654333
No 76
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=29.35 E-value=1.1e+02 Score=24.73 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=17.6
Q ss_pred hhHHHHHHHhCCeEeeccccc
Q 031174 12 EEIVPLCRELGIGIVPYSPIG 32 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa 32 (164)
..+++.|+++|..+++.+|..
T Consensus 165 ~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 165 KKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred HHHHHHHHHhCCeEEEEcHHH
Confidence 478999999999999988654
No 77
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=29.19 E-value=1.2e+02 Score=23.01 Aligned_cols=40 Identities=30% Similarity=0.335 Sum_probs=30.4
Q ss_pred HcCCCHHHHHHHHHHcCCCceeecCCCC--CHHHHHHhHhcc
Q 031174 78 KHKCTPAQLALAWILQQGDDVIPIPGTS--KIKNLDDNIGSL 117 (164)
Q Consensus 78 ~~g~s~~qlaL~w~l~~~~v~~~I~G~~--~~~~l~enl~a~ 117 (164)
+...|-.++|+.|++.+.....+|.|+. +.+|+-.|+.-+
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll 115 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLL 115 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHH
Confidence 4455779999999999998777777543 788888887543
No 78
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.01 E-value=1.5e+02 Score=19.51 Aligned_cols=37 Identities=19% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCCchhhHHHHHHHHHH----HHHHHHHcCC-CHHHHHHHHHH
Q 031174 55 PRFKEENLEKNKNIYIR----IDNLAKKHKC-TPAQLALAWIL 92 (164)
Q Consensus 55 ~~~~~~~~~~~~~~~~~----l~~ia~~~g~-s~~qlaL~w~l 92 (164)
..|+.+...+..+.+.. +.++|.++|+ +..++ .+|..
T Consensus 6 r~~s~EfK~~iv~~~~~~g~sv~~vAr~~gv~~~~~l-~~W~~ 47 (116)
T COG2963 6 KKYSPEFKLEAVALYLRGGDTVSEVAREFGIVSATQL-YKWRI 47 (116)
T ss_pred ccCCHHHHHHHHHHHHhcCccHHHHHHHhCCCChHHH-HHHHH
Confidence 34555555555555444 8899999996 66654 45555
No 79
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=28.28 E-value=33 Score=22.57 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccC-------CcCCHHHHHHHHhhCC
Q 031174 67 NIYIRIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLA-------LKLTKEDLKEIADAVP 134 (164)
Q Consensus 67 ~~~~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~-------~~Lt~e~~~~l~~~~~ 134 (164)
+.+++++.+|+..|..+..-... ...+| .....+|.-+.+.|.+.++..+ -.||+....-|++.+.
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~~q-~~~~~-~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTVVQ-KRRKP-DPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEe-cCCCC-CcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 34568899999888765432211 12222 3566789999999999776553 2899999999988875
No 80
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.95 E-value=1e+02 Score=26.97 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=37.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHh
Q 031174 56 RFKEENLEKNKNIYIRIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIG 115 (164)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~ 115 (164)
.|.+...++..+++..++.+++|||+++..+.-..--........--+..+.++|+..++
T Consensus 293 e~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~ 352 (557)
T COG0497 293 EFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVK 352 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 356667788889999999999999999877543222222211222224445666665553
No 81
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.81 E-value=28 Score=21.96 Aligned_cols=29 Identities=7% Similarity=0.201 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHhhCCCCccCCCcchHHHh
Q 031174 120 KLTKEDLKEIADAVPIQEVEGDRTYESMK 148 (164)
Q Consensus 120 ~Lt~e~~~~l~~~~~~~~~~~~~~~~~~~ 148 (164)
+||++|...|+++.++..-..+.|.+...
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~DP~fa~~l~ 30 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRADDPRFAARLR 30 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhcCcHHHHHhc
Confidence 68899988888887776656677766665
No 82
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=27.77 E-value=47 Score=26.22 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=64.0
Q ss_pred cccccccchhhhHHHHHHHhCCeEe-ecccccccccCCC-CCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHH-HHHH
Q 031174 2 EWSLWTRDIEEEIVPLCRELGIGIV-PYSPIGRGFFAGK-AVVESLPADSFVASHPRFKEENLEKNKNIYIRIDN-LAKK 78 (164)
Q Consensus 2 ~ynll~r~~e~~~l~~~~~~gi~v~-a~spLa~G~Ltg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ia~~ 78 (164)
-|.+.+.+.-..+.+.|+.+||..+ .++|+-.. |... .......+|..+. . .+...++++++.- +.-+
T Consensus 63 ~~Tlv~~elr~~l~~~~~~~~i~~vdll~p~i~~-le~~lg~~p~~~pG~~~~----l----d~~Yf~RIeAiefal~hD 133 (269)
T PRK05339 63 FYTLVDPELREILEERCAEFGIPCIDILGPLIAP-LEQELGLKPTPEPGRTHG----L----DEEYFKRIEAIEFALAHD 133 (269)
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCEEeccHHHHHH-HHHHHCcCCCCCCCcccC----C----cHHHHHHHHHHHHHHHcC
Confidence 3667777765556699999999887 45665432 2211 1111111111111 1 1334455555542 1111
Q ss_pred --------------------cCCCHHHHHHHHHHcCC-CceeecCCCCCHHHHHHhHh--ccCCcCCHHHHHHHHhh
Q 031174 79 --------------------HKCTPAQLALAWILQQG-DDVIPIPGTSKIKNLDDNIG--SLALKLTKEDLKEIADA 132 (164)
Q Consensus 79 --------------------~g~s~~qlaL~w~l~~~-~v~~~I~G~~~~~~l~enl~--a~~~~Lt~e~~~~l~~~ 132 (164)
.|.||..+=|+. .... ...-.+++..=++.|.+.-. .+.+.++++-+.+|++-
T Consensus 134 DG~~~~~l~~ADIiLvGVSRtsKTPlS~YLA~-~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~ 209 (269)
T PRK05339 134 DGQDPRGLDEADVILVGVSRTSKTPTSLYLAN-KGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKE 209 (269)
T ss_pred CCCCcCCcccCCEEEECcCCCCCcHHHHHHHc-cCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHH
Confidence 244566665554 2222 22334567777888877543 44568888888887643
No 83
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=27.69 E-value=50 Score=27.02 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.3
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.++++||+++-..||++.+..
T Consensus 292 ~~I~~~A~~~~vPi~~~~~LAr~Ly~ 317 (347)
T TIGR00328 292 LKIKEIARENNVPIVENPPLARALYR 317 (347)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 47899999999999999999988753
No 84
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=27.31 E-value=46 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.616 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC
Q 031174 71 RIDNLAKKHKCTPAQLALAWILQQG 95 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qlaL~w~l~~~ 95 (164)
.+++||+++||++.+| =+|--.++
T Consensus 21 k~~dIAeklGvspnti-ksWKrr~g 44 (279)
T COG5484 21 KLKDIAEKLGVSPNTI-KSWKRRDG 44 (279)
T ss_pred cHHHHHHHhCCChHHH-HHHHHhcC
Confidence 5789999999999986 46665543
No 85
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.22 E-value=69 Score=18.85 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=17.1
Q ss_pred hhHHHHHHHhCCeEeeccccc
Q 031174 12 EEIVPLCRELGIGIVPYSPIG 32 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa 32 (164)
.+++..|++.|+..++.+=..
T Consensus 18 ~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 18 EELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHcCCCEEEEeeCC
Confidence 589999999999998765443
No 86
>PHA01623 hypothetical protein
Probab=26.86 E-value=1.1e+02 Score=17.96 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCCHHHH
Q 031174 67 NIYIRIDNLAKKHKCTPAQL 86 (164)
Q Consensus 67 ~~~~~l~~ia~~~g~s~~ql 86 (164)
+....|..+|.++|++.+++
T Consensus 23 el~~~Ld~y~~~~g~~rSe~ 42 (56)
T PHA01623 23 DLKTRLKVYCAKNNLQLTQA 42 (56)
T ss_pred HHHHHHHHHHHHcCCCHHHH
Confidence 34468899999999987654
No 87
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=26.19 E-value=1.4e+02 Score=19.07 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHH
Q 031174 61 NLEKNKNIYIRIDNLAKKHKCTPAQL 86 (164)
Q Consensus 61 ~~~~~~~~~~~l~~ia~~~g~s~~ql 86 (164)
......+..+.+..++.++|+||+.-
T Consensus 62 ~~~~~~~~~~~~~~l~~~lGLtP~sR 87 (100)
T PF05119_consen 62 AVSILNKAMKQMRSLASELGLTPASR 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 34556667788999999999998654
No 88
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=26.13 E-value=1.7e+02 Score=23.41 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHh
Q 031174 70 IRIDNLAKKHKC------TPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIG 115 (164)
Q Consensus 70 ~~l~~ia~~~g~------s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~ 115 (164)
.+|.++|++.|. ++.+|=..|+.... ...+-.|+|+|+-|-+++-
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCCCHHHHHHHH
Confidence 489999999988 46888899998844 3556779999999877664
No 89
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=26.06 E-value=1.5e+02 Score=18.76 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCHHH---HHHHHHHcCC
Q 031174 70 IRIDNLAKKHKCTPAQ---LALAWILQQG 95 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~q---laL~w~l~~~ 95 (164)
+....+++++|+++++ +.++++..+.
T Consensus 15 ~~a~~i~~~lGl~~s~ai~~fl~qvv~~~ 43 (83)
T TIGR02384 15 KEAYAVFEELGLTPSTAIRMFLKQVIREQ 43 (83)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 5677889999999876 4555565555
No 90
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=25.93 E-value=69 Score=18.80 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 031174 70 IRIDNLAKKHKCTPAQLALA 89 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~ 89 (164)
.+++-+|+++|+|..||.-+
T Consensus 21 ~ev~ywa~~~gvt~~~L~~A 40 (57)
T PF12244_consen 21 YEVRYWAKRFGVTEEQLREA 40 (57)
T ss_pred HHHHHHHHHHCcCHHHHHHH
Confidence 37888999999998887543
No 91
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=25.82 E-value=1.8e+02 Score=20.63 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHcCCCceeecCCCCCHHHHHH
Q 031174 67 NIYIRIDNLAKKHK--CTPAQLALAWILQQGDDVIPIPGTSKIKNLDD 112 (164)
Q Consensus 67 ~~~~~l~~ia~~~g--~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~e 112 (164)
.+.+.+...|.... ..+...++.|+..+. +.+||.++.+++-.
T Consensus 119 ~L~~~l~~~a~~~~~~~~l~~~~~~~L~~~r---I~lP~~~~L~rli~ 163 (166)
T PF13700_consen 119 ELEEWLREAARTTDDPDDLFNALIEWLRQRR---IELPGYSTLERLIS 163 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC---eeCCCHHHHHHHHH
Confidence 33344555555443 236888999999987 77899988887754
No 92
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=25.72 E-value=1.2e+02 Score=22.55 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHHHcCCCceeecCCCC--CHHHHHHhHhcc
Q 031174 79 HKCTPAQLALAWILQQGDDVIPIPGTS--KIKNLDDNIGSL 117 (164)
Q Consensus 79 ~g~s~~qlaL~w~l~~~~v~~~I~G~~--~~~~l~enl~a~ 117 (164)
..-|-.++||+|++.++.-...|.|+. ..+|.-.|+..+
T Consensus 70 KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 70 KDTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 344679999999999876667777765 778887888754
No 93
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=25.72 E-value=55 Score=23.11 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCC---cCCHHHHHHHHhhCC
Q 031174 71 RIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLAL---KLTKEDLKEIADAVP 134 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~---~Lt~e~~~~l~~~~~ 134 (164)
-++.+|-........+.+..++- |.++++|+.+ .++++-+.++.. .+|...+.++.++..
T Consensus 25 ~lqrlcs~~~l~LlsLgl~~LLL---V~IcVigsQ~-~qlq~dl~tLretfsNFssst~aEvqaL~S 87 (138)
T PF03954_consen 25 LLQRLCSGPRLLLLSLGLSLLLL---VVICVIGSQN-SQLQRDLRTLRETFSNFSSSTLAEVQALSS 87 (138)
T ss_pred HHHHHcccchHHHHHHHHHHHHH---HHHHhhcCcc-HHHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 45666665555556666666654 5677889888 677776666632 677777777776655
No 94
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=25.69 E-value=64 Score=20.71 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHcCCCHHHH
Q 031174 65 NKNIYIRIDNLAKKHKCTPAQL 86 (164)
Q Consensus 65 ~~~~~~~l~~ia~~~g~s~~ql 86 (164)
..+.+..+++++.++|+|+.+|
T Consensus 22 ~~~~~~~i~~~~~~~Gis~~el 43 (93)
T PF00816_consen 22 REEAIAEIRELMAEYGISPEEL 43 (93)
T ss_dssp CHHHHHHHHHHHHHTT--HHHC
T ss_pred HHHHHHHHHHHHHHhCCCHHHh
Confidence 3467788999999999999998
No 95
>COG3612 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.61 E-value=2.6e+02 Score=20.08 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=44.8
Q ss_pred cchhhhHHHHHHHhCCeEeecccccccccCCC-CCCCCCCCCcccccCCCCchhhHHHHH------------HHHHHHHH
Q 031174 8 RDIEEEIVPLCRELGIGIVPYSPIGRGFFAGK-AVVESLPADSFVASHPRFKEENLEKNK------------NIYIRIDN 74 (164)
Q Consensus 8 r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~ 74 (164)
.+.-..+++.+.+.|+-+---.-++-+|=++. .-+.++.++.-......-.+..+++++ +.+.++..
T Consensus 38 pd~akr~vd~A~~eGLL~~k~~~~~p~Fd~~~V~lP~df~pd~~~l~srsk~~~~~driLDa~aA~g~~~rqe~Va~vn~ 117 (157)
T COG3612 38 PDVAKRVVDEALAEGLLVKKGGRLAPTFDTSGVELPLDFKPDESFLFSRSKDKPSFDRILDAAAASGKLDRQEAVAEVNS 117 (157)
T ss_pred hHHHHHHHHHHHhcccccccCcccCCCCCCCceecccCCCCCHHHHHhccCCcchHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 33336778888877766655455555554443 222333222111111010111233333 44455566
Q ss_pred HHHHcC-CCHHHHHHHHHHcCC
Q 031174 75 LAKKHK-CTPAQLALAWILQQG 95 (164)
Q Consensus 75 ia~~~g-~s~~qlaL~w~l~~~ 95 (164)
+-++.| +|.-.+||.++..++
T Consensus 118 ~qe~l~lvtf~~aaLivake~G 139 (157)
T COG3612 118 LQENLGLVTFQTAALIVAKEFG 139 (157)
T ss_pred HHHHhcceehHHHHHHHHHHhC
Confidence 666777 677777777777776
No 96
>PRK13702 replication protein; Provisional
Probab=25.33 E-value=1.6e+02 Score=18.95 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHc
Q 031174 68 IYIRIDNLAKKHKCTPAQLALAWILQ 93 (164)
Q Consensus 68 ~~~~l~~ia~~~g~s~~qlaL~w~l~ 93 (164)
+-+.|.++|++.|+|-+++.-.|+.+
T Consensus 52 lK~~L~elc~~~glTQAe~IE~LIe~ 77 (85)
T PRK13702 52 LKDKLMELCEEEGLTQAEMIERLIER 77 (85)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34678899999999999987777654
No 97
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.12 E-value=58 Score=26.80 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.2
Q ss_pred hhHHHHHHHhCCeEeecccccccccC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFA 37 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Lt 37 (164)
..+.+.|+++||+++-.-||+..+..
T Consensus 299 ~~i~~~A~~~~vpi~~~~~LAr~Ly~ 324 (359)
T PRK05702 299 LKIREIAREHNVPIVENPPLARALYA 324 (359)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 47899999999999999999988753
No 98
>PF04746 DUF575: Protein of unknown function (DUF575); InterPro: IPR006835 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=24.63 E-value=42 Score=22.01 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCC
Q 031174 102 PGTSKIKNLDDNIGSLALKLTKEDLKEIADAVP 134 (164)
Q Consensus 102 ~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~ 134 (164)
.|-....++++.++.....++++++..+..-++
T Consensus 64 ~G~dhisrve~~Lk~~R~~i~~ed~~KVHGk~p 96 (101)
T PF04746_consen 64 RGRDHISRVEEYLKSLRVTIEPEDLGKVHGKYP 96 (101)
T ss_pred hCCCchHHHHHHHHHhcCCCCccccccccCcCC
Confidence 366677888888888888888888766544333
No 99
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=24.59 E-value=2.4e+02 Score=26.65 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHcCCC--ceeecCCCCCHHHHHHh----HhccCCcCCHHHHHHHHhhCCC
Q 031174 65 NKNIYIRIDNLAKKHKCT--PAQLALAWILQQGD--DVIPIPGTSKIKNLDDN----IGSLALKLTKEDLKEIADAVPI 135 (164)
Q Consensus 65 ~~~~~~~l~~ia~~~g~s--~~qlaL~w~l~~~~--v~~~I~G~~~~~~l~en----l~a~~~~Lt~e~~~~l~~~~~~ 135 (164)
.++....++.+-++.... ...+--.|++.+|. +.+++|...-.+++++- +......|++|+++.|.+-.++
T Consensus 416 ~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~ki~~~~~~ 494 (978)
T COG1026 416 SLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKK 494 (978)
T ss_pred hhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 333334444444444434 57789999999983 34555666556666553 3444558999999988776654
No 100
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=24.56 E-value=25 Score=20.48 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=5.3
Q ss_pred HHHHHHcCCCHHH
Q 031174 73 DNLAKKHKCTPAQ 85 (164)
Q Consensus 73 ~~ia~~~g~s~~q 85 (164)
.++|++.|++..+
T Consensus 14 ~~La~~~gis~~t 26 (63)
T PF13443_consen 14 KDLARKTGISRST 26 (63)
T ss_dssp HHHHHHHT--HHH
T ss_pred HHHHHHHCcCHHH
Confidence 3455555555444
No 101
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.22 E-value=61 Score=26.76 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.3
Q ss_pred hhHHHHHHHhCCeEeecccccccccCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAG 38 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg 38 (164)
..+.+++++|||.++---|||+.+...
T Consensus 299 lkIreiA~e~~Ipi~enppLARaLY~~ 325 (363)
T COG1377 299 LKIREIAKEHGIPIIENPPLARALYRQ 325 (363)
T ss_pred HHHHHHHHHcCCceecChHHHHHHHHh
Confidence 467899999999999999999887543
No 102
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=24.11 E-value=87 Score=17.07 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCCHHHHH
Q 031174 71 RIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qla 87 (164)
.+.+||+..|++.+.|.
T Consensus 22 s~~~IA~~lg~s~sTV~ 38 (44)
T PF13936_consen 22 SIREIAKRLGRSRSTVS 38 (44)
T ss_dssp -HHHHHHHTT--HHHHH
T ss_pred CHHHHHHHHCcCcHHHH
Confidence 46788888888877653
No 103
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.00 E-value=1.5e+02 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH
Q 031174 63 EKNKNIYIRIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 63 ~~~~~~~~~l~~ia~~~g~s~~qla 87 (164)
+-+..+...++++|++.|.|+..++
T Consensus 58 ~IN~aR~a~Yq~lA~~n~~s~~~va 82 (109)
T COG3784 58 DINAARAASYQQLAKKNGASTEEVA 82 (109)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3456777889999999999986654
No 104
>PHA01748 hypothetical protein
Probab=23.74 E-value=1.2e+02 Score=17.87 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHH
Q 031174 67 NIYIRIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 67 ~~~~~l~~ia~~~g~s~~qla 87 (164)
+..+++..+|+++|++.+++.
T Consensus 12 el~~eld~~a~~~g~~RSE~I 32 (60)
T PHA01748 12 DLLELLDRYAIKHGLNRSEAI 32 (60)
T ss_pred HHHHHHHHHHHHhCCCHHHHH
Confidence 345688999999999866643
No 105
>PRK00901 methylated-DNA--protein-cysteine methyltransferase; Provisional
Probab=23.45 E-value=1e+02 Score=22.13 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=27.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCC
Q 031174 72 IDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTS 105 (164)
Q Consensus 72 l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~ 105 (164)
+.+||+..|.+.+.-|...++.+..+..+||+-+
T Consensus 93 Y~~lA~~~g~p~a~RAVg~A~~~NP~~iiIPCHR 126 (155)
T PRK00901 93 YKEIAVNIGNPKACRAVGLANNKNPIPIFIPCHR 126 (155)
T ss_pred HHHHHHHHCCCchHHHHHHHHHhCCCCCccCCce
Confidence 4678888898878888888888888888887644
No 106
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=23.35 E-value=1e+02 Score=24.10 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCCHH-----HHHHHHHHcCCC
Q 031174 69 YIRIDNLAKKHKCTPA-----QLALAWILQQGD 96 (164)
Q Consensus 69 ~~~l~~ia~~~g~s~~-----qlaL~w~l~~~~ 96 (164)
++.++.+++++|+... +-|++|.+.+++
T Consensus 200 L~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 200 LAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4566778888888754 789999999984
No 107
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.33 E-value=75 Score=24.62 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=16.9
Q ss_pred chhhhHHHHHHHhCCeEeeccc
Q 031174 9 DIEEEIVPLCRELGIGIVPYSP 30 (164)
Q Consensus 9 ~~e~~~l~~~~~~gi~v~a~sp 30 (164)
+.-++.++.|+++||.+..-+.
T Consensus 41 ~~l~eki~la~~~~V~v~~GGt 62 (237)
T TIGR03849 41 DIVKEKIEMYKDYGIKVYPGGT 62 (237)
T ss_pred HHHHHHHHHHHHcCCeEeCCcc
Confidence 4457899999999999876443
No 108
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=23.31 E-value=70 Score=23.20 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCC--CHHHHHHhHhccCCc
Q 031174 67 NIYIRIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTS--KIKNLDDNIGSLALK 120 (164)
Q Consensus 67 ~~~~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~--~~~~l~enl~a~~~~ 120 (164)
..-++|+++.++.|+|..++|=+.-+++..+.-..-|-+ +.+.+..-.++++++
T Consensus 7 ~~g~~l~~~R~~~glt~~elA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~ 62 (185)
T PRK09943 7 APGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLS 62 (185)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 344567777777777777766665444443332222322 445555555555443
No 109
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=23.31 E-value=1.1e+02 Score=16.60 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCCHHHHHHHH
Q 031174 71 RIDNLAKKHKCTPAQLALAW 90 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qlaL~w 90 (164)
.+.+||+..|+|.+.+.=|+
T Consensus 19 s~~~la~~lglS~~~v~~Ri 38 (42)
T PF13404_consen 19 SYAELAEELGLSESTVRRRI 38 (42)
T ss_dssp -HHHHHHHHTS-HHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 46788999999988876554
No 110
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=23.06 E-value=94 Score=18.03 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCCHHHHH
Q 031174 71 RIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qla 87 (164)
.+.++|++.|+|.+.+.
T Consensus 25 tl~elA~~lgis~st~~ 41 (53)
T PF04967_consen 25 TLEELAEELGISKSTVS 41 (53)
T ss_pred CHHHHHHHhCCCHHHHH
Confidence 57889999999987664
No 111
>PHA01976 helix-turn-helix protein
Probab=23.02 E-value=54 Score=19.24 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 031174 70 IRIDNLAKKHKCTPAQLALA 89 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~ 89 (164)
.+|+.+-++.|+|..++|-.
T Consensus 5 ~rl~~~R~~~glt~~~lA~~ 24 (67)
T PHA01976 5 IQLIKARNARAWSAPELSRR 24 (67)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 35555666666666666544
No 112
>PF12551 PHBC_N: Poly-beta-hydroxybutyrate polymerase N terminal; InterPro: IPR022211 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF07167 from PFAM, PF00561 from PFAM. There is a single completely conserved residue W that may be functionally important. PHBC is the third enzyme of the poly-beta-hydroxybutyrate biosynthetic pathway.
Probab=22.91 E-value=77 Score=17.93 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=11.2
Q ss_pred cCCCHHHHHHHHH
Q 031174 79 HKCTPAQLALAWI 91 (164)
Q Consensus 79 ~g~s~~qlaL~w~ 91 (164)
.|+||+.++++|.
T Consensus 22 ~GlSPaal~lA~~ 34 (46)
T PF12551_consen 22 GGLSPAALALAYL 34 (46)
T ss_pred cCcCHHHHHHHHH
Confidence 4899999999886
No 113
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.74 E-value=2.8e+02 Score=22.43 Aligned_cols=54 Identities=22% Similarity=0.182 Sum_probs=32.6
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKC 81 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 81 (164)
..++.|+.++||.++-.|.==-.+- ..|.+...+.+...+.++++.++|+++|+
T Consensus 55 ~~~L~~n~~~~I~f~RisS~l~P~a----------------sh~~~~~~~~~~~~~~l~~iG~~a~~~~i 108 (312)
T TIGR00629 55 MKTLHWNIGHGIPFYRFSSSIFPFA----------------SHPDVGYDLVTFAQKELREIGELAKTHQH 108 (312)
T ss_pred HHHHHHHHHcCCcEEecCccccCcC----------------cCchhhhhHHHHHHHHHHHHHHHHHHcCe
Confidence 4789999999999986432111111 11222112334556777788888888766
No 114
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=22.72 E-value=1.6e+02 Score=17.39 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHHHHhHhccCCcCCHHHHHHHHhhC
Q 031174 70 IRIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNLDDNIGSLALKLTKEDLKEIADAV 133 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~ 133 (164)
-.+..+|+++|+|+.++.-.|- ... -.+.|.++.+.+-..=.+..++.|.+..
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~-~~~----------~~~~i~~~Yd~lHt~s~~yivedi~~~l 58 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFK-RSG----------VIDYIIDCYDVLHTQSDEYIVEDIIEYL 58 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHH-HcC----------cHHHHHHcchHHHHCcHHHHHHHHHHHH
Confidence 3678899999999999766555 333 2345666655543222333344444443
No 115
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=22.60 E-value=2.8e+02 Score=21.64 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=34.0
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~qla 87 (164)
..+++.++++|+.++...--..|. | ...+..++.++.+.+.|.++|+++.++.
T Consensus 106 ~~~~~l~~~~g~~vv~m~~~~~g~----------P-------------~t~~~~~~~l~~~v~~a~~~GI~~~~Ii 158 (261)
T PRK07535 106 EVVLPLVKKYNAPVVALTMDDTGI----------P-------------KDAEDRLAVAKELVEKADEYGIPPEDIY 158 (261)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCC----------C-------------CCHHHHHHHHHHHHHHHHHcCCCHhHEE
Confidence 368888899988888654322331 1 0123345666677778888998877764
No 116
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=22.59 E-value=62 Score=20.13 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCceeecC---CCCCHHHHHHhHhccCC
Q 031174 64 KNKNIYIRIDNLAKKHKCTPAQLALAWILQQGDDVIPIP---GTSKIKNLDDNIGSLAL 119 (164)
Q Consensus 64 ~~~~~~~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~---G~~~~~~l~enl~a~~~ 119 (164)
...++...+.++-++.|.|..++|=.--.++|.|+-..- ..-+.+.|...+.+++.
T Consensus 15 ~k~~l~~~i~~~~~~~~ltQ~e~A~~lgisq~~vS~l~~g~~~~~sl~~L~~~l~aLG~ 73 (80)
T PF13744_consen 15 AKAQLMAAIRELREERGLTQAELAERLGISQPRVSRLENGKIDDFSLDTLLRYLEALGG 73 (80)
T ss_dssp HHHHHHHHHHHHHHCCT--HHHHHHHHTS-HHHHHHHHTT-GCC--HHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhHHHHHHcCcccCCCHHHHHHHHHHcCC
Confidence 344555667778888888888888877777775443332 23345555555555543
No 117
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=22.41 E-value=1.8e+02 Score=22.30 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=37.6
Q ss_pred ccccccchhhhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCC
Q 031174 3 WSLWTRDIEEEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCT 82 (164)
Q Consensus 3 ynll~r~~e~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 82 (164)
|.+|...-..+++...-+.|..++.-+.-+.|+-. ...+. ++. .+.++.++.+.++||++
T Consensus 116 ~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~-~~lGr------------~i~-------~~~~e~l~~l~~~ygi~ 175 (223)
T COG2102 116 YAPLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDE-SWLGR------------RID-------REFLEELKSLNRRYGIH 175 (223)
T ss_pred eecccCCCHHHHHHHHHHcCCeEEEEEEeccCCCh-HHhCC------------ccC-------HHHHHHHHHHHHhcCCC
Confidence 45555443347777777888877777777777521 01110 111 13346888999999987
Q ss_pred HH
Q 031174 83 PA 84 (164)
Q Consensus 83 ~~ 84 (164)
++
T Consensus 176 ~~ 177 (223)
T COG2102 176 PA 177 (223)
T ss_pred cc
Confidence 63
No 118
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=22.29 E-value=93 Score=15.98 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCCHHHHH
Q 031174 71 RIDNLAKKHKCTPAQLA 87 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qla 87 (164)
.+..||+++|++..+++
T Consensus 6 tl~~IA~~~~~~~~~l~ 22 (44)
T TIGR02899 6 TLWKIAKKYGVDFDELI 22 (44)
T ss_pred CHHHHHHHHCcCHHHHH
Confidence 56679999999877764
No 119
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=22.19 E-value=1.9e+02 Score=18.09 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCHHHH---HHHHHHcCC
Q 031174 69 YIRIDNLAKKHKCTPAQL---ALAWILQQG 95 (164)
Q Consensus 69 ~~~l~~ia~~~g~s~~ql---aL~w~l~~~ 95 (164)
-+...++++++|+++++. .++.+..+.
T Consensus 13 K~~a~~il~~~Glt~s~ai~~fl~qiv~~~ 42 (83)
T PF04221_consen 13 KEEAEAILEELGLTLSDAINMFLKQIVREG 42 (83)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 357788999999998764 444444444
No 120
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=2e+02 Score=19.21 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Q 031174 65 NKNIYIRIDNLAKKHKCTPAQLALAWILQQG 95 (164)
Q Consensus 65 ~~~~~~~l~~ia~~~g~s~~qlaL~w~l~~~ 95 (164)
..++...++.||++...+...+.+.|-.-.|
T Consensus 63 TaakY~DMk~iAEkla~k~deLn~KfenL~P 93 (120)
T KOG4559|consen 63 TAAKYKDMKQIAEKLAGKLDELNLKFENLAP 93 (120)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 4467778889999998889999988876555
No 121
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=22.15 E-value=1.6e+02 Score=22.20 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCceeecCCC
Q 031174 70 IRIDNLAKKHKCTPAQLALAWILQQGDDVIPIPGT 104 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~ 104 (164)
.+..+.|++.|+|.+..+++....+..-..+.+|-
T Consensus 93 ~~v~~~A~~~g~TRs~aa~~~a~~~~~~~I~vIGN 127 (198)
T PF02570_consen 93 PEVAELAKEEGITRSAAAMRKAAKELPGAIVVIGN 127 (198)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHCTTTTCEEEESS
T ss_pred CchHHHHhhcCCcHHHHHHHHHHHHcCCcEEEEeC
Confidence 36778899999999999999999976556666664
No 122
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=22.14 E-value=1.6e+02 Score=16.89 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH
Q 031174 67 NIYIRIDNLAKKHKCTPAQLAL 88 (164)
Q Consensus 67 ~~~~~l~~ia~~~g~s~~qlaL 88 (164)
+..+.|+..|...++++.++|-
T Consensus 32 ~A~~~Lr~~Am~~~~~l~~vA~ 53 (56)
T PF03861_consen 32 EAYRLLRRQAMRRRRSLADVAE 53 (56)
T ss_dssp HHHHHHHHHHHHCTS-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHH
Confidence 3345666677777777766663
No 123
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=22.02 E-value=1.5e+02 Score=16.58 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 031174 70 IRIDNLAKKHKCTPAQLALAWI 91 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~ 91 (164)
+.+..||.+.|++..+|-.-|.
T Consensus 28 ~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 28 EEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHH
T ss_pred cccccccccccccccccccCHH
Confidence 4678899999999999876654
No 124
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=21.88 E-value=1e+02 Score=23.48 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCceeecCC
Q 031174 71 RIDNLAKKHKCTPAQLALAWILQQGDDVIPIPG 103 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G 103 (164)
...++|++.|+|.+..+++....++.-..+++|
T Consensus 107 ~v~e~A~~~g~TRsaaam~~a~~~~~~~IvvIG 139 (214)
T PRK08286 107 RVVELAKEQGITRSMAAVDIAAAEEGPKLFVFG 139 (214)
T ss_pred chHHHHHhcCCcHHHHHHHHHHhccCCcEEEEe
Confidence 466789999999999999988876544455555
No 125
>PRK05802 hypothetical protein; Provisional
Probab=21.77 E-value=44 Score=26.86 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHcCCCHHHHHHHHHHcCCCceeecCCCCCHHHH
Q 031174 75 LAKKHKCTPAQLALAWILQQGDDVIPIPGTSKIKNL 110 (164)
Q Consensus 75 ia~~~g~s~~qlaL~w~l~~~~v~~~I~G~~~~~~l 110 (164)
||.-.|++|.-..++++++++.-...+.|.++.+++
T Consensus 178 IaGGiGIaPl~~l~~~l~~~~~~v~li~g~r~~~~~ 213 (320)
T PRK05802 178 IARGIGQAPGVPVIKKLYSNGNKIIVIIDKGPFKNN 213 (320)
T ss_pred EEeEEeHHHHHHHHHHHHHcCCcEEEEEeCCCHHHH
Confidence 566668888877888888776557778899998764
No 126
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=21.73 E-value=1e+02 Score=20.71 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHhHhccCCcCCHHHHHHHHhhCCC
Q 031174 102 PGTSKIKNLDDNIGSLALKLTKEDLKEIADAVPI 135 (164)
Q Consensus 102 ~G~~~~~~l~enl~a~~~~Lt~e~~~~l~~~~~~ 135 (164)
+...+.+.++.-+...+..+++++++.|-.....
T Consensus 76 L~P~~~dElrai~~~~~~~~~~e~l~~ILd~l~k 109 (112)
T PRK14981 76 ILPETRDELRAIFAKERYTLSPEELDEILDIVKK 109 (112)
T ss_pred cCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4677899999999888889999999888766543
No 127
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=21.50 E-value=2.3e+02 Score=23.17 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCC----HHHHHHHHHHcCCCceeecCCC-----CCHHHHHHhHhcc-----CCcCCHHHHHHHHhhCCC
Q 031174 70 IRIDNLAKKHKCT----PAQLALAWILQQGDDVIPIPGT-----SKIKNLDDNIGSL-----ALKLTKEDLKEIADAVPI 135 (164)
Q Consensus 70 ~~l~~ia~~~g~s----~~qlaL~w~l~~~~v~~~I~G~-----~~~~~l~enl~a~-----~~~Lt~e~~~~l~~~~~~ 135 (164)
++.+++|+++|+. ..++ +..+.+.++.+.+ ...+...+.+++- +++|+.++.++|-++.+.
T Consensus 39 erA~~~A~~~gi~~y~~~eel-----l~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 39 ERSRALAHRLGVPLYCEVEEL-----PDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred HHHHHHHHHhCCCccCCHHHH-----hcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 4667788888864 3333 2455555555543 4466666666653 458998888888777654
No 128
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=21.46 E-value=1.4e+02 Score=16.10 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 031174 70 IRIDNLAKKHKCTPAQLALAWIL 92 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~l 92 (164)
++...||++.|+|..||.--|+.
T Consensus 14 ~ek~~L~~~tgls~~Qi~~WF~N 36 (40)
T PF05920_consen 14 EEKEELAKQTGLSRKQISNWFIN 36 (40)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 35677899999999999876654
No 129
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=21.39 E-value=1.7e+02 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHH
Q 031174 64 KNKNIYIRIDNLAKKHKCTPAQL 86 (164)
Q Consensus 64 ~~~~~~~~l~~ia~~~g~s~~ql 86 (164)
+..+.+..+++++.++|+|+.++
T Consensus 53 er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 53 ERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHH
Confidence 34567788889999999999998
No 130
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=21.29 E-value=2.2e+02 Score=23.45 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=24.2
Q ss_pred HHcCCC---HHHHHHHHHHcCCCceeecCCCCCH
Q 031174 77 KKHKCT---PAQLALAWILQQGDDVIPIPGTSKI 107 (164)
Q Consensus 77 ~~~g~s---~~qlaL~w~l~~~~v~~~I~G~~~~ 107 (164)
.+.|++ ...-+..|+++++.|..||+|+...
T Consensus 216 ~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I 249 (356)
T PRK08334 216 HYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRI 249 (356)
T ss_pred HHCCCCEEEEehhHHHHHhhhcCCCEEEECccEE
Confidence 356776 3777888999988899999988654
No 131
>PRK09726 antitoxin HipB; Provisional
Probab=21.23 E-value=1.2e+02 Score=19.04 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Q 031174 70 IRIDNLAKKHKCTPAQLALAWILQQ 94 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~l~~ 94 (164)
..|+.+.++.|+|..++|-.--+++
T Consensus 15 ~~lk~~R~~~gltq~elA~~~gvs~ 39 (88)
T PRK09726 15 NAMKLVRQQNGWTQSELAKKIGIKQ 39 (88)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH
Confidence 4566666777777777775544333
No 132
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=21.23 E-value=50 Score=28.17 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=23.2
Q ss_pred HHHHHcCCCHHHHHHHHHHcCCC-ceeecCC
Q 031174 74 NLAKKHKCTPAQLALAWILQQGD-DVIPIPG 103 (164)
Q Consensus 74 ~ia~~~g~s~~qlaL~w~l~~~~-v~~~I~G 103 (164)
.+|.-||+|.+.-.|+|++.+-+ -.+.++|
T Consensus 111 aVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 111 AVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 36677899999999999999873 3455666
No 133
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=21.11 E-value=79 Score=18.13 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=8.7
Q ss_pred HHHHHcCCCHHHH
Q 031174 74 NLAKKHKCTPAQL 86 (164)
Q Consensus 74 ~ia~~~g~s~~ql 86 (164)
++|+..|++++|+
T Consensus 33 ~La~~~gi~~~qV 45 (50)
T PF06971_consen 33 ELAEALGITPAQV 45 (50)
T ss_dssp HHHHHHTS-HHHH
T ss_pred HHHHHHCCCHHHh
Confidence 5777777777775
No 134
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=21.07 E-value=56 Score=17.64 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCCHHHH
Q 031174 70 IRIDNLAKKHKCTPAQL 86 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~ql 86 (164)
...+.+|+++|+++.++
T Consensus 7 P~ar~la~e~gidl~~v 23 (39)
T PF02817_consen 7 PAARKLAAELGIDLSQV 23 (39)
T ss_dssp HHHHHHHHHTT--GGGS
T ss_pred HHHHHHHHHcCCCcccc
Confidence 37788999999887754
No 135
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=21.06 E-value=1.5e+02 Score=16.48 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Q 031174 70 IRIDNLAKKHKCTPAQLALAWILQ 93 (164)
Q Consensus 70 ~~l~~ia~~~g~s~~qlaL~w~l~ 93 (164)
+.+..||...|++..+|---|...
T Consensus 28 ~~~~~la~~~~l~~~qV~~WF~nr 51 (59)
T cd00086 28 EEREELAKELGLTERQVKIWFQNR 51 (59)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 478889999999999988766544
No 136
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.03 E-value=1.6e+02 Score=23.47 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=14.0
Q ss_pred hhHHHHHHHhCCeEee
Q 031174 12 EEIVPLCRELGIGIVP 27 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a 27 (164)
++++++|+..|+.|=+
T Consensus 118 ~evv~~Ah~~gv~VEa 133 (286)
T PRK12738 118 KSVVDFCHSQDCSVEA 133 (286)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 6899999999998854
No 137
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.98 E-value=2.4e+02 Score=22.42 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCceeecCCCCCHHHHHHhH
Q 031174 70 IRIDNLAKKHKC------TPAQLALAWILQQGDDVIPIPGTSKIKNLDDNI 114 (164)
Q Consensus 70 ~~l~~ia~~~g~------s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl 114 (164)
.+|.++|++.|. +..+|-..|+..... .-+..|+|+|+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHH
Confidence 478889998875 578999999977653 56678999999876544
No 138
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.82 E-value=3.2e+02 Score=19.35 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=34.5
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCT 82 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 82 (164)
.++..+++++||.+.+..+.......... ...-.++ +++.++.++..-++|++.|+.
T Consensus 30 ~~~~~~~~~~gl~i~~~~~~~~~~~~~~~-------------~~~~~~~-r~~~~~~~~~~i~~a~~lg~~ 86 (213)
T PF01261_consen 30 EELRRLLEDYGLKIASLHPPTNFWSPDEE-------------NGSANDE-REEALEYLKKAIDLAKRLGAK 86 (213)
T ss_dssp HHHHHHHHHTTCEEEEEEEEESSSCTGTT-------------STTSSSH-HHHHHHHHHHHHHHHHHHTBS
T ss_pred HHHHHHHHHcCCeEEEEeccccccccccc-------------ccCcchh-hHHHHHHHHHHHHHHHHhCCC
Confidence 48899999999999988877655322110 0000112 455566666666777776643
No 139
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.74 E-value=1.5e+02 Score=24.53 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.4
Q ss_pred hhHHHHHHHhCCeEeecccccccccCCCCCCCCCCCCcccccCCCCchhhHHHHHHHHHHHHHHHHHcCCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAGKAVVESLPADSFVASHPRFKEENLEKNKNIYIRIDNLAKKHKCT 82 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 82 (164)
+.+++.|.++||.++.-+ |-+++ ...++.+++++++.|++
T Consensus 61 ~~~L~~~~~~gIkvI~Na----Gg~np---------------------------~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNA----GGLNP---------------------------AGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHhCCCCEEEeC----CCCCH---------------------------HHHHHHHHHHHHhcCCC
Confidence 589999999999998753 22111 11457899999999976
No 140
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=20.49 E-value=83 Score=17.19 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCCC
Q 031174 69 YIRIDNLAKKHKCT 82 (164)
Q Consensus 69 ~~~l~~ia~~~g~s 82 (164)
+..|+++|+++|++
T Consensus 7 ~~eL~~iAk~lgI~ 20 (43)
T PF07498_consen 7 LSELREIAKELGIE 20 (43)
T ss_dssp HHHHHHHHHCTT-T
T ss_pred HHHHHHHHHHcCCC
Confidence 35889999999874
No 141
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=20.31 E-value=74 Score=18.88 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=9.9
Q ss_pred hhHHHHHHHhCC
Q 031174 12 EEIVPLCRELGI 23 (164)
Q Consensus 12 ~~~l~~~~~~gi 23 (164)
.++.+||+++|-
T Consensus 30 ~eV~~YC~~~GW 41 (57)
T PF08727_consen 30 PEVREYCEEQGW 41 (57)
T ss_dssp HHHHHHHHHHT-
T ss_pred HHHHHHHHHCCc
Confidence 479999999984
No 142
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=20.23 E-value=1.4e+02 Score=24.22 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=23.3
Q ss_pred hhHHHHHHHhCCeEeecccccccccCC
Q 031174 12 EEIVPLCRELGIGIVPYSPIGRGFFAG 38 (164)
Q Consensus 12 ~~~l~~~~~~gi~v~a~spLa~G~Ltg 38 (164)
..++..+++.||.++-.-|||+.++..
T Consensus 293 ~~i~~iAe~~~ipVveni~LAraL~~d 319 (349)
T COG4792 293 LQIVKIAEEEGIPVVENIPLARALYRD 319 (349)
T ss_pred HHHHHHHHHhCCCeeeccHHHHHHHhc
Confidence 468899999999999999999877543
No 143
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=20.13 E-value=3.7e+02 Score=21.75 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=14.5
Q ss_pred ccccccchhhhHHHHHHHhCCe
Q 031174 3 WSLWTRDIEEEIVPLCRELGIG 24 (164)
Q Consensus 3 ynll~r~~e~~~l~~~~~~gi~ 24 (164)
||=++-+.+++.++.++++|+.
T Consensus 127 iNSIn~e~~~eel~llk~yg~a 148 (308)
T PRK00979 127 YNSINPSIEEEEIEALKESDIK 148 (308)
T ss_pred EEeccCCCCHHHHHHHHHhCCc
Confidence 3444444344668999999966
No 144
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=20.13 E-value=4.5e+02 Score=22.12 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCceeecCC-CCCHHHHHHhHh
Q 031174 71 RIDNLAKKHKCTPAQLALAWILQQGDDVIPIPG-TSKIKNLDDNIG 115 (164)
Q Consensus 71 ~l~~ia~~~g~s~~qlaL~w~l~~~~v~~~I~G-~~~~~~l~enl~ 115 (164)
.+-.++++.|.++.++ ...+..+.+... +.| +++...|++..+
T Consensus 253 ~~~~l~~~~~~s~~e~-~~~Ln~~SGLlg-~sG~s~D~Rel~~~~~ 296 (404)
T TIGR00016 253 IISYLAETLGMSADDI-ENTLNKKSGLLG-ISGLSSDLRDIEDAYA 296 (404)
T ss_pred HHHHHHHhcCCCHHHH-HHHHhhcccceE-ecCCCCCHHHHHHHHH
Confidence 5667888889988774 566677776544 568 889988877654
No 145
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.06 E-value=2.9e+02 Score=21.96 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCceeecCCCCCHHHHHHhH
Q 031174 70 IRIDNLAKKHKC------TPAQLALAWILQQGDDVIPIPGTSKIKNLDDNI 114 (164)
Q Consensus 70 ~~l~~ia~~~g~------s~~qlaL~w~l~~~~v~~~I~G~~~~~~l~enl 114 (164)
.+|.++|.+.+. +..+|-..|+.... ..-+..|+|+|+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 478889988875 47888889998764 456678999999776554
Done!