Query 031175
Match_columns 164
No_of_seqs 172 out of 1113
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0157 NadC Nicotinate-nucleo 100.0 1.5E-49 3.3E-54 336.6 17.2 140 24-164 4-145 (280)
2 PRK07428 nicotinate-nucleotide 100.0 1.8E-48 3.9E-53 332.7 18.7 149 12-164 2-153 (288)
3 PLN02716 nicotinate-nucleotide 100.0 2.1E-48 4.5E-53 334.6 18.7 150 15-164 8-157 (308)
4 PRK06543 nicotinate-nucleotide 100.0 2.4E-48 5.2E-53 330.9 18.0 140 24-164 5-146 (281)
5 PRK06106 nicotinate-nucleotide 100.0 5.4E-48 1.2E-52 328.8 18.2 140 25-164 10-151 (281)
6 PRK06978 nicotinate-nucleotide 100.0 5.5E-48 1.2E-52 330.3 17.8 139 24-164 23-163 (294)
7 PRK06559 nicotinate-nucleotide 100.0 2.6E-47 5.7E-52 325.7 17.5 139 25-164 12-154 (290)
8 PRK08072 nicotinate-nucleotide 100.0 5.1E-47 1.1E-51 322.2 17.9 139 25-164 5-145 (277)
9 PRK06096 molybdenum transport 100.0 8.3E-47 1.8E-51 322.0 17.8 136 26-164 5-144 (284)
10 PRK05742 nicotinate-nucleotide 100.0 1.4E-46 2.9E-51 319.7 18.1 139 24-164 7-147 (277)
11 PRK07896 nicotinate-nucleotide 100.0 1.7E-46 3.7E-51 320.7 17.7 142 22-164 11-157 (289)
12 PRK09016 quinolinate phosphori 100.0 2.4E-46 5.3E-51 320.5 18.6 139 25-164 22-166 (296)
13 TIGR01334 modD putative molybd 100.0 2.7E-46 6E-51 317.8 17.9 136 26-164 4-143 (277)
14 cd01572 QPRTase Quinolinate ph 100.0 5.3E-46 1.1E-50 314.3 17.5 136 28-164 2-139 (268)
15 PRK08385 nicotinate-nucleotide 100.0 1.5E-45 3.2E-50 313.5 17.4 134 28-164 4-141 (278)
16 cd01573 modD_like ModD; Quinol 100.0 1.4E-45 2.9E-50 312.4 17.0 134 28-164 2-139 (272)
17 PRK05848 nicotinate-nucleotide 100.0 2.3E-45 5E-50 311.6 17.8 136 25-164 2-139 (273)
18 TIGR00078 nadC nicotinate-nucl 100.0 2.2E-45 4.7E-50 310.3 16.5 133 29-164 1-135 (265)
19 cd01568 QPRTase_NadC Quinolina 100.0 6E-45 1.3E-49 307.6 16.7 135 28-164 2-138 (269)
20 KOG3008 Quinolinate phosphorib 100.0 8E-37 1.7E-41 253.6 8.5 145 13-164 6-154 (300)
21 PRK08662 nicotinate phosphorib 100.0 6.7E-35 1.5E-39 254.2 12.9 132 27-164 9-150 (343)
22 cd01571 NAPRTase_B Nicotinate 100.0 1E-32 2.3E-37 236.6 9.7 121 41-164 7-133 (302)
23 PF02749 QRPTase_N: Quinolinat 100.0 9.4E-30 2E-34 182.6 9.6 88 38-128 1-88 (88)
24 cd00516 PRTase_typeII Phosphor 100.0 8E-29 1.7E-33 208.0 14.8 122 43-164 1-133 (281)
25 PRK07188 nicotinate phosphorib 100.0 2.9E-28 6.4E-33 213.3 15.4 113 52-164 35-152 (352)
26 PRK09243 nicotinate phosphorib 99.2 1.1E-10 2.4E-15 105.9 11.9 119 33-155 10-167 (464)
27 cd01570 NAPRTase_A Nicotinate 99.2 1.7E-10 3.6E-15 100.4 12.3 103 52-155 21-158 (327)
28 cd01567 NAPRTase_PncB Nicotina 99.0 6.1E-09 1.3E-13 90.6 11.8 103 52-155 20-169 (343)
29 TIGR01513 NAPRTase_put putativ 98.8 1E-07 2.2E-12 86.4 11.9 101 53-154 22-157 (443)
30 PRK12484 nicotinate phosphorib 98.7 1.5E-07 3.2E-12 85.3 12.1 99 54-153 26-159 (443)
31 COG1488 PncB Nicotinic acid ph 98.7 2.4E-07 5.1E-12 83.1 11.0 129 24-155 5-170 (405)
32 PRK09198 putative nicotinate p 98.3 7.6E-06 1.7E-10 74.7 10.7 82 74-155 85-186 (463)
33 cd01569 PBEF_like pre-B-cell c 98.0 4.7E-05 1E-09 68.6 10.2 57 85-142 96-156 (407)
34 PHA02594 nadV nicotinamide pho 97.8 0.00013 2.8E-09 66.9 9.0 57 85-142 101-161 (470)
35 PLN02885 nicotinate phosphorib 97.7 0.0003 6.6E-09 65.5 10.9 63 90-152 105-170 (545)
36 cd01401 PncB_like Nicotinate p 96.8 0.0058 1.3E-07 54.7 8.4 63 92-154 88-176 (377)
37 PRK05321 nicotinate phosphorib 95.9 0.058 1.3E-06 48.7 9.3 54 100-153 106-178 (400)
38 TIGR01514 NAPRTase nicotinate 94.0 0.25 5.5E-06 44.6 7.9 54 99-152 101-178 (394)
39 PF13533 Biotin_lipoyl_2: Biot 93.8 0.07 1.5E-06 34.2 2.8 25 87-111 14-38 (50)
40 PF07831 PYNP_C: Pyrimidine nu 91.4 0.56 1.2E-05 32.7 5.1 38 81-118 28-66 (75)
41 PF00364 Biotin_lipoyl: Biotin 90.4 0.3 6.4E-06 33.4 2.9 23 87-109 18-40 (74)
42 PRK06748 hypothetical protein; 90.1 0.39 8.5E-06 34.4 3.4 24 85-108 14-37 (83)
43 PRK05889 putative acetyl-CoA c 90.0 0.42 9.2E-06 32.3 3.3 26 85-110 12-37 (71)
44 TIGR02645 ARCH_P_rylase putati 85.3 6.1 0.00013 36.9 8.9 64 53-116 409-478 (493)
45 PRK06078 pyrimidine-nucleoside 84.7 14 0.00031 33.9 10.9 61 53-113 331-404 (434)
46 PRK05820 deoA thymidine phosph 83.0 15 0.00033 33.8 10.3 61 53-113 336-409 (440)
47 TIGR02644 Y_phosphoryl pyrimid 82.9 8.5 0.00018 35.0 8.6 60 53-112 329-401 (405)
48 COG0508 AceF Pyruvate/2-oxoglu 82.4 1.3 2.8E-05 39.9 3.2 23 87-109 20-42 (404)
49 PRK08225 acetyl-CoA carboxylas 82.2 2.1 4.5E-05 28.5 3.5 24 86-109 12-35 (70)
50 cd06850 biotinyl_domain The bi 81.7 1.9 4.2E-05 27.4 3.1 23 86-108 9-32 (67)
51 PRK14875 acetoin dehydrogenase 81.4 1.8 3.8E-05 36.5 3.5 23 87-109 20-42 (371)
52 PRK04350 thymidine phosphoryla 81.1 13 0.00027 34.8 9.2 64 53-116 401-470 (490)
53 PF10011 DUF2254: Predicted me 80.5 14 0.0003 32.8 8.9 47 59-107 197-245 (371)
54 TIGR03327 AMP_phos AMP phospho 79.7 14 0.00031 34.6 9.0 64 53-116 410-479 (500)
55 COG0213 DeoA Thymidine phospho 78.0 12 0.00025 34.5 7.8 64 53-116 332-408 (435)
56 KOG0557 Dihydrolipoamide acety 77.6 1.9 4.2E-05 39.8 2.7 25 86-110 55-79 (470)
57 TIGR02643 T_phosphoryl thymidi 76.3 18 0.00039 33.3 8.6 62 53-114 335-409 (437)
58 COG0511 AccB Biotin carboxyl c 76.2 3.1 6.8E-05 32.0 3.2 21 87-107 82-102 (140)
59 KOG2511 Nicotinic acid phospho 75.2 1.6 3.5E-05 39.2 1.5 67 75-141 85-151 (420)
60 cd06663 Biotinyl_lipoyl_domain 75.2 5.5 0.00012 26.3 3.8 25 85-109 15-39 (73)
61 PF00529 HlyD: HlyD family sec 75.1 1.9 4.2E-05 35.5 1.9 26 85-110 11-36 (305)
62 PRK08225 acetyl-CoA carboxylas 74.5 3.9 8.6E-05 27.2 3.0 21 87-107 50-70 (70)
63 cd06850 biotinyl_domain The bi 74.2 8.9 0.00019 24.2 4.5 33 56-106 35-67 (67)
64 PRK05641 putative acetyl-CoA c 74.0 3.9 8.5E-05 32.3 3.3 25 85-109 94-118 (153)
65 PTZ00144 dihydrolipoamide succ 73.0 3.9 8.5E-05 37.2 3.5 21 87-107 62-82 (418)
66 TIGR00830 PTBA PTS system, glu 70.6 5 0.00011 30.5 3.1 22 86-107 81-102 (121)
67 TIGR02971 heterocyst_DevB ABC 70.4 15 0.00033 31.1 6.4 24 87-110 28-51 (327)
68 PF12700 HlyD_2: HlyD family s 69.8 5.5 0.00012 33.1 3.5 26 86-111 31-56 (328)
69 PLN02226 2-oxoglutarate dehydr 68.7 5.4 0.00012 36.9 3.4 19 89-107 148-166 (463)
70 PRK06549 acetyl-CoA carboxylas 67.0 7.7 0.00017 29.9 3.5 22 87-108 73-94 (130)
71 cd00210 PTS_IIA_glc PTS_IIA, P 66.9 6.6 0.00014 30.0 3.0 22 86-107 81-102 (124)
72 PRK09439 PTS system glucose-sp 64.7 7.4 0.00016 31.3 3.1 22 86-107 103-124 (169)
73 cd06848 GCS_H Glycine cleavage 64.5 19 0.00041 25.6 5.0 40 67-109 16-55 (96)
74 TIGR01347 sucB 2-oxoglutarate 64.1 7.8 0.00017 35.0 3.5 19 89-107 57-75 (403)
75 PRK07051 hypothetical protein; 63.3 10 0.00023 26.1 3.3 20 88-107 60-79 (80)
76 PF00358 PTS_EIIA_1: phosphoen 62.9 6.7 0.00015 30.2 2.4 22 86-107 85-106 (132)
77 TIGR00998 8a0101 efflux pump m 62.4 7.1 0.00015 33.0 2.8 23 88-110 55-77 (334)
78 COG2190 NagE Phosphotransferas 61.0 8.7 0.00019 30.7 2.8 22 86-107 88-109 (156)
79 PRK05704 dihydrolipoamide succ 60.9 9 0.0002 34.6 3.3 21 89-109 59-79 (407)
80 PRK15136 multidrug efflux syst 60.5 8.9 0.00019 34.0 3.1 23 88-110 74-96 (390)
81 PRK10559 p-hydroxybenzoic acid 60.5 7.9 0.00017 33.2 2.7 24 87-110 59-82 (310)
82 PRK10476 multidrug resistance 59.8 8.7 0.00019 33.1 2.9 22 88-109 61-82 (346)
83 TIGR01843 type_I_hlyD type I s 58.8 7.8 0.00017 33.5 2.5 27 85-111 53-79 (423)
84 PRK03598 putative efflux pump 58.7 10 0.00022 32.5 3.1 24 87-110 55-78 (331)
85 PLN02983 biotin carboxyl carri 58.7 8 0.00017 33.5 2.4 22 88-109 217-238 (274)
86 PF00364 Biotin_lipoyl: Biotin 57.5 11 0.00024 25.5 2.5 35 54-106 40-74 (74)
87 TIGR01730 RND_mfp RND family e 56.9 27 0.00059 28.9 5.3 23 88-110 39-61 (322)
88 TIGR01000 bacteriocin_acc bact 56.8 9.4 0.0002 34.4 2.7 29 82-110 66-94 (457)
89 PRK07051 hypothetical protein; 56.8 12 0.00025 25.8 2.6 22 88-109 23-44 (80)
90 COG0511 AccB Biotin carboxyl c 56.8 14 0.00029 28.5 3.2 23 85-107 117-139 (140)
91 PF05896 NQRA: Na(+)-transloca 55.5 10 0.00022 32.6 2.5 35 84-118 38-84 (257)
92 PRK11854 aceF pyruvate dehydro 53.8 12 0.00025 35.7 2.9 22 86-107 221-242 (633)
93 TIGR00531 BCCP acetyl-CoA carb 53.4 12 0.00025 29.5 2.4 21 88-108 100-120 (156)
94 cd03522 MoeA_like MoeA_like. T 52.8 56 0.0012 28.6 6.8 56 52-109 75-130 (312)
95 TIGR01348 PDHac_trf_long pyruv 52.5 13 0.00028 34.9 2.9 23 85-107 131-153 (546)
96 TIGR02927 SucB_Actino 2-oxoglu 51.7 16 0.00034 34.7 3.3 22 86-107 152-173 (590)
97 PLN02744 dihydrolipoyllysine-r 51.5 15 0.00032 34.7 3.1 22 86-107 129-150 (539)
98 PRK15030 multidrug efflux syst 50.9 72 0.0016 28.2 7.3 23 87-109 77-99 (397)
99 PRK09578 periplasmic multidrug 50.5 69 0.0015 28.0 7.1 22 88-109 76-97 (385)
100 PRK05889 putative acetyl-CoA c 50.4 22 0.00047 23.7 3.1 19 88-106 52-70 (71)
101 TIGR03794 NHPM_micro_HlyD NHPM 50.4 17 0.00037 32.3 3.3 24 88-111 71-94 (421)
102 PF13375 RnfC_N: RnfC Barrel s 50.0 14 0.00031 27.0 2.3 25 85-109 40-64 (101)
103 PRK06302 acetyl-CoA carboxylas 49.7 15 0.00032 28.8 2.5 22 88-109 99-120 (155)
104 PRK14042 pyruvate carboxylase 49.4 19 0.00041 34.4 3.5 26 84-109 534-559 (596)
105 TIGR01108 oadA oxaloacetate de 49.1 18 0.0004 34.2 3.4 25 84-108 526-550 (582)
106 PRK11855 dihydrolipoamide acet 49.0 18 0.00038 33.8 3.2 25 85-109 134-158 (547)
107 PRK11578 macrolide transporter 48.2 17 0.00037 31.6 2.8 22 88-109 74-95 (370)
108 PLN02528 2-oxoisovalerate dehy 46.5 22 0.00047 32.2 3.3 19 89-107 55-73 (416)
109 PRK11556 multidrug efflux syst 46.4 19 0.00041 32.2 2.9 24 87-110 99-122 (415)
110 COG0845 AcrA Membrane-fusion p 45.5 56 0.0012 26.6 5.4 25 84-108 75-99 (372)
111 PRK09859 multidrug efflux syst 44.8 21 0.00045 31.3 2.9 22 88-109 74-95 (385)
112 cd01433 Ribosomal_L16_L10e Rib 43.9 37 0.00079 25.0 3.7 16 96-111 75-90 (112)
113 PRK11856 branched-chain alpha- 43.7 27 0.00058 31.2 3.4 17 91-107 61-77 (411)
114 PRK09783 copper/silver efflux 43.1 46 0.00099 29.7 4.8 22 89-110 137-159 (409)
115 cd06849 lipoyl_domain Lipoyl d 42.9 40 0.00086 20.6 3.3 22 87-108 18-39 (74)
116 PRK06748 hypothetical protein; 42.8 32 0.0007 24.5 3.1 34 56-107 41-74 (83)
117 PF09324 DUF1981: Domain of un 42.6 24 0.00052 24.8 2.4 33 107-139 47-84 (86)
118 PRK11854 aceF pyruvate dehydro 42.2 27 0.00057 33.3 3.3 21 89-109 57-77 (633)
119 PRK11855 dihydrolipoamide acet 41.1 31 0.00066 32.2 3.5 24 86-109 18-41 (547)
120 PRK14040 oxaloacetate decarbox 40.7 29 0.00064 33.0 3.4 26 84-109 533-558 (593)
121 TIGR01349 PDHac_trf_mito pyruv 40.0 28 0.00061 31.7 3.0 19 89-107 56-75 (435)
122 COG1726 NqrA Na+-transporting 39.6 5.7 0.00012 36.1 -1.5 35 85-119 39-85 (447)
123 PRK06302 acetyl-CoA carboxylas 39.1 34 0.00074 26.7 3.0 23 85-107 133-155 (155)
124 TIGR00531 BCCP acetyl-CoA carb 37.7 37 0.0008 26.6 3.0 21 87-107 136-156 (156)
125 TIGR02712 urea_carbox urea car 37.4 33 0.00072 35.3 3.3 24 86-109 1143-1166(1201)
126 TIGR02927 SucB_Actino 2-oxoglu 36.4 39 0.00085 32.0 3.5 24 86-109 19-42 (590)
127 PRK11892 pyruvate dehydrogenas 36.3 38 0.00082 31.3 3.3 23 87-109 20-42 (464)
128 COG1566 EmrA Multidrug resista 36.1 39 0.00085 30.2 3.2 25 85-109 63-87 (352)
129 TIGR01348 PDHac_trf_long pyruv 35.9 40 0.00086 31.6 3.4 23 87-109 17-39 (546)
130 TIGR01235 pyruv_carbox pyruvat 33.2 48 0.001 34.1 3.7 26 84-109 1083-1108(1143)
131 TIGR01995 PTS-II-ABC-beta PTS 32.8 40 0.00086 32.1 2.9 22 86-107 545-566 (610)
132 PRK01202 glycine cleavage syst 32.7 97 0.0021 23.4 4.6 41 66-109 23-63 (127)
133 PF00936 BMC: BMC domain; Int 32.7 1.4E+02 0.0031 20.3 5.0 55 66-126 10-64 (75)
134 TIGR03077 not_gcvH glycine cle 32.3 1.1E+02 0.0024 22.7 4.7 40 66-109 16-56 (110)
135 PRK09824 PTS system beta-gluco 31.3 41 0.0009 32.3 2.8 21 87-107 562-582 (627)
136 PF02843 GARS_C: Phosphoribosy 30.9 68 0.0015 22.9 3.3 36 91-126 41-76 (93)
137 PRK10255 PTS system N-acetyl g 30.7 44 0.00095 32.3 2.8 21 87-107 582-602 (648)
138 PF13437 HlyD_3: HlyD family s 30.3 73 0.0016 22.1 3.3 22 88-109 12-33 (105)
139 PRK06549 acetyl-CoA carboxylas 30.3 55 0.0012 25.1 2.8 19 88-106 111-129 (130)
140 PF01551 Peptidase_M23: Peptid 29.2 57 0.0012 22.5 2.6 20 90-109 56-75 (96)
141 PRK05641 putative acetyl-CoA c 29.1 65 0.0014 25.3 3.1 20 87-106 133-152 (153)
142 PRK00624 glycine cleavage syst 28.4 89 0.0019 23.4 3.6 40 66-109 18-58 (114)
143 PRK09282 pyruvate carboxylase 28.3 64 0.0014 30.7 3.4 23 85-107 532-554 (592)
144 COG1038 PycA Pyruvate carboxyl 28.1 49 0.0011 33.4 2.6 25 83-107 1087-1111(1149)
145 TIGR01164 rplP_bact ribosomal 27.2 74 0.0016 24.2 3.1 14 96-109 95-108 (126)
146 COG4770 Acetyl/propionyl-CoA c 25.6 82 0.0018 30.4 3.6 26 83-108 583-608 (645)
147 PF01597 GCV_H: Glycine cleava 24.9 1.6E+02 0.0035 21.9 4.5 40 67-109 18-57 (122)
148 TIGR01730 RND_mfp RND family e 24.6 1.2E+02 0.0025 25.1 4.1 36 57-110 134-169 (322)
149 PRK13380 glycine cleavage syst 23.7 3.5E+02 0.0076 20.9 6.5 40 67-109 31-70 (144)
150 TIGR02388 rpoC2_cyan DNA-direc 23.7 1.2E+02 0.0026 31.6 4.6 56 61-116 971-1066(1227)
151 KOG0559 Dihydrolipoamide succi 23.6 62 0.0013 29.7 2.3 36 55-108 113-148 (457)
152 PF00252 Ribosomal_L16: Riboso 23.0 1.1E+02 0.0023 23.3 3.3 15 96-110 95-109 (133)
153 cd06254 M14_ASTE_ASPA_like_4 A 22.8 99 0.0022 26.2 3.3 23 87-109 234-256 (288)
154 TIGR00999 8a0102 Membrane Fusi 22.4 3.1E+02 0.0068 21.9 6.1 17 94-110 1-17 (265)
155 PRK12999 pyruvate carboxylase; 22.4 88 0.0019 32.2 3.4 24 85-108 1086-1109(1146)
156 TIGR01936 nqrA NADH:ubiquinone 22.2 55 0.0012 30.1 1.8 25 85-109 39-63 (447)
157 PRK15325 type III secretion sy 22.2 2.6E+02 0.0055 20.0 4.8 34 108-141 41-74 (80)
158 cd02396 PCBP_like_KH K homolog 22.0 2.3E+02 0.005 18.2 5.3 43 71-117 19-61 (65)
159 CHL00044 rpl16 ribosomal prote 21.8 1.5E+02 0.0032 22.9 3.8 16 96-111 96-111 (135)
160 PRK09783 copper/silver efflux 21.4 1.9E+02 0.0041 25.8 5.0 36 57-110 209-244 (409)
161 cd06255 M14_ASTE_ASPA_like_5 A 20.9 1.1E+02 0.0025 26.0 3.3 26 87-112 242-267 (293)
162 cd06251 M14_ASTE_ASPA_like_1 A 20.8 1.2E+02 0.0025 25.8 3.4 24 87-110 230-253 (287)
163 PF09891 DUF2118: Uncharacteri 20.4 1.2E+02 0.0025 24.1 3.1 24 84-107 89-112 (150)
No 1
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-49 Score=336.58 Aligned_cols=140 Identities=45% Similarity=0.726 Sum_probs=136.0
Q ss_pred ccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEE
Q 031175 24 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 103 (164)
Q Consensus 24 ~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~i 103 (164)
..++..|+.||.||+| +||+||+++++++.++++.+++||+||+||++++.++|+.+||.++++|+++||++++||++|
T Consensus 4 ~~~~~~v~~~L~ED~g-~gDiTt~al~~~~~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~~i 82 (280)
T COG0157 4 LLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGDVL 82 (280)
T ss_pred hhHHHHHHHHHHhhcC-CCCcccccccCCCCeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCCEE
Confidence 4688999999999998 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 104 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 104 l~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
++++|+++.||++||++||||||+|||||+|++||++++ +++|+|||||+||||.||||||
T Consensus 83 ~~~~G~a~~lL~~ER~aLN~L~~lSGIAT~T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV 145 (280)
T COG0157 83 AEIEGPARALLTAERTALNFLQHLSGIATATARMVEALRGTNVRIADTRKTTPGLRLLEKYAV 145 (280)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCcEEEeccCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999994 6899999999999999999997
No 2
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.8e-48 Score=332.74 Aligned_cols=149 Identities=36% Similarity=0.567 Sum_probs=142.8
Q ss_pred CCCcccCCCCCCccHHHHHHHHHhhhCCCCCCcccccccCCC-cEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEe
Q 031175 12 ESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLD-MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 90 (164)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~-~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~ 90 (164)
+|.+.+||. ..++++|+.||+||+| +||+||+.+++++ .++++.|++|++||+||++++.++|+.+|++++++|+
T Consensus 2 ~~~~~~~~~---~~~~~~i~~~l~ED~~-~~DlTt~~~~~~~~~~~~~~i~ar~~gv~~G~~~a~~i~~~~~~~~~~~~~ 77 (288)
T PRK07428 2 SSMAMLPPW---LVLDPLLQQWLREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPL 77 (288)
T ss_pred CCcccCCcc---hhHHHHHHHHHHhcCC-CCCCCcccccCCCCcEEEEEEEecCCeEEECHHHHHHHHHHcCCcEEEEEE
Confidence 678888888 7789999999999998 7999999998888 8999999999999999999999999999988899999
Q ss_pred cCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 91 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 91 ~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
++||+.|++|++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 78 ~~dG~~v~~g~~i~~~~G~a~~ll~~eR~~lN~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~l~k~AV 153 (288)
T PRK07428 78 VAEGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKIADLPTQLVDTRKTTPGLRLLEKYAT 153 (288)
T ss_pred cCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 46999999999999999999997
No 3
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=100.00 E-value=2.1e-48 Score=334.59 Aligned_cols=150 Identities=79% Similarity=1.203 Sum_probs=141.4
Q ss_pred cccCCCCCCccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCC
Q 031175 15 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDG 94 (164)
Q Consensus 15 ~~~~~~~~~~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG 94 (164)
+...+..++..+++.|+.||+||+|++||+||.++++++..+++.|++|++||+||++++.++|+.+|++++++|+++||
T Consensus 8 ~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~~~dG 87 (308)
T PLN02716 8 AIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWAAIDG 87 (308)
T ss_pred ccccccCChHHHHHHHHHHHHHhCCCCCCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 34445555567999999999999974599999999999999999999999999999999999999999999999999999
Q ss_pred CeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEeecCCCCcCchhHhhhcC
Q 031175 95 DHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 95 ~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~~~~I~~TRKT~PGlR~leKyAV 164 (164)
+.|++|++|++++|++++||++||++||||||+|||||+|++||+++.+++|+|||||+||+|.||||||
T Consensus 88 ~~v~~G~~i~~v~G~a~~il~~ER~aLN~L~~~SGIAT~T~~~V~~~~~~~I~~TRKT~PGlR~l~k~AV 157 (308)
T PLN02716 88 DFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSGIATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157 (308)
T ss_pred CEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEeeecCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988899999999999999999997
No 4
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.4e-48 Score=330.95 Aligned_cols=140 Identities=43% Similarity=0.662 Sum_probs=135.1
Q ss_pred ccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEE
Q 031175 24 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 103 (164)
Q Consensus 24 ~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~i 103 (164)
..++++|+.||+||+| +||+||+.+++++..++++|++|++||+||++++.++|+.+|++++++|+++||+.+++|++|
T Consensus 5 ~~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~a~i~are~gvlaG~~~a~~if~~~~~~~~v~~~~~dG~~v~~G~~i 83 (281)
T PRK06543 5 HIIDRIVEAALAEDAP-WGDITSETLIPASATASAHLTAREPGVFSGIDVFAAAFRLVDPAITVTLAVADGERFEAGDIL 83 (281)
T ss_pred HHHHHHHHHHHHhCCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCCeEEEEEeCCCCEecCCCEE
Confidence 3478999999999998 799999999998999999999999999999999999999999889999999999999999999
Q ss_pred EEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 104 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 104 l~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
++++|++++||++||++||||||+|||||+||+||+++ ++++|+|||||+||+|.||||||
T Consensus 84 ~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 146 (281)
T PRK06543 84 ATVTGPARSVLTAERIALNFTQRMSGIATLTAAFVDAVNGTRARIVDTRKTTPGLRIFERYAV 146 (281)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999 46999999999999999999997
No 5
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=5.4e-48 Score=328.82 Aligned_cols=140 Identities=40% Similarity=0.614 Sum_probs=135.2
Q ss_pred cHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEE
Q 031175 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 104 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il 104 (164)
.++++|+.||+||+|++||+||+.+++++..+++.|++|++||+||++++.++|+.+|++++++|+++||+.+++|++|+
T Consensus 10 ~~~~~i~~~l~ED~~~~gDlTt~~l~~~~~~~~~~i~ake~gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~g~~i~ 89 (281)
T PRK06106 10 MLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPGDVIA 89 (281)
T ss_pred HHHHHHHHHHHHHCCCCCCCCcccccCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcCCCEEE
Confidence 58999999999999734999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 105 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 105 ~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
+++|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 90 ~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 151 (281)
T PRK06106 90 TISGPARGLLTAERTALNFLCHLSGIATATASIVAAIAGTKAKVVCTRKTTPGLRALEKYAV 151 (281)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999994 6899999999999999999997
No 6
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=5.5e-48 Score=330.28 Aligned_cols=139 Identities=36% Similarity=0.591 Sum_probs=133.2
Q ss_pred ccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEE
Q 031175 24 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 103 (164)
Q Consensus 24 ~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~i 103 (164)
..++++|+.||+||+| +||+|| .+++++..+++.|++|++||+||++++.++|+.+|++++++|+++||+.|++|++|
T Consensus 23 ~~~~~~i~~~L~ED~~-~gDlTt-~~~~~~~~~~a~i~are~gvlaG~~~a~~if~~l~~~~~v~~~~~dG~~v~~G~~i 100 (294)
T PRK06978 23 AAIARNVADAIAEDVG-SGDQTG-RLVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTWRYREGDRMTADSTV 100 (294)
T ss_pred HHHHHHHHHHHHhcCC-CCCCCc-cccCCCceEEEEEEEcCCEEEECHHHHHHHHHHhCCCeEEEEEcCCCCEeCCCCEE
Confidence 3489999999999998 699999 56777889999999999999999999999999999889999999999999999999
Q ss_pred EEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 104 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 104 l~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 101 ~~~~G~a~~lL~~ER~aLN~l~~~SGIAT~T~~~V~~~~~~~~~I~dTRKT~PGlR~lekyAV 163 (294)
T PRK06978 101 CELEGPARALLTAERNALNFLQLLSGVASATRRYVDRIAGTRARILDTRKTLPGLRLAQKYAV 163 (294)
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999998 47999999999999999999997
No 7
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.6e-47 Score=325.66 Aligned_cols=139 Identities=33% Similarity=0.536 Sum_probs=134.6
Q ss_pred cHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEec--CCCCeeeCCCE
Q 031175 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL--KDGDHVHKGLQ 102 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~--~dG~~v~~G~~ 102 (164)
.++++|+.||+||+| +||+||+++++++.++++.+++|++||+||++++.++|+.+|++++++|++ +||+.+++|++
T Consensus 12 ~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gvlaG~~~a~~if~~l~~~~~~~~~~~~~dG~~v~~G~~ 90 (290)
T PRK06559 12 QIDDTLKAALREDVH-SEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDL 90 (290)
T ss_pred HHHHHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCcEEEEEeecCCCCCEecCCCE
Confidence 589999999999998 799999999999999999999999999999999999999999989999988 99999999999
Q ss_pred EEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 103 FGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 103 il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 91 i~~v~G~a~~ll~~ER~alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 154 (290)
T PRK06559 91 VLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAV 154 (290)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999998 46999999999999999999997
No 8
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=5.1e-47 Score=322.21 Aligned_cols=139 Identities=42% Similarity=0.593 Sum_probs=133.5
Q ss_pred cHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEE
Q 031175 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 104 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il 104 (164)
.++++|+.||+||+| +||+||.++++++..+++.|++|++||+||++++.++|+.+|++++++|+++||+.|++|++|+
T Consensus 5 ~~~~~i~~~l~ED~~-~~DlTt~~~i~~~~~~~~~~~ar~~gv~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i~ 83 (277)
T PRK08072 5 KLKQALNRFFLEDIG-EGDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEIIA 83 (277)
T ss_pred HHHHHHHHHHhcCCC-CCCCCcccccCCCCeEEEEEEecCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEE
Confidence 488999999999998 6999999887777689999999999999999999999999998899999999999999999999
Q ss_pred EEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 105 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 105 ~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
+++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 84 ~~~G~~~~ll~~er~~ln~l~~~sGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 145 (277)
T PRK08072 84 TVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDDSHIRICDTRKTTPGLRMFDKYAV 145 (277)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999 46899999999999999999997
No 9
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=100.00 E-value=8.3e-47 Score=321.97 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=131.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEE
Q 031175 26 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 105 (164)
Q Consensus 26 ~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~ 105 (164)
.++.|+.||+||+| +||+||+++++++..+++.+++|++||+||++++.++|+.+| ++++|+++||+.|++|++|++
T Consensus 5 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~ake~gv~aG~~~a~~if~~l~--~~v~~~~~dG~~v~~G~~i~~ 81 (284)
T PRK06096 5 SDAQLDALLLEDIQ-GGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSDGSQANAGQRLIS 81 (284)
T ss_pred cHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 45779999999998 799999999999999999999999999999999999999997 999999999999999999999
Q ss_pred EeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh----CCCeEeecCCCCcCchhHhhhcC
Q 031175 106 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 106 i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a----~~~~I~~TRKT~PGlR~leKyAV 164 (164)
++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 82 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV 144 (284)
T PRK06096 82 AQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDGNIACTRKAIPGTRLLATQAV 144 (284)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHH
Confidence 999999999999999999999999999999999988 46999999999999999999997
No 10
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.4e-46 Score=319.66 Aligned_cols=139 Identities=40% Similarity=0.659 Sum_probs=132.5
Q ss_pred ccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEE
Q 031175 24 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 103 (164)
Q Consensus 24 ~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~i 103 (164)
..++++|+.||+||+| +||+|| .+++++.+++++|++||+||+||++++.++|+.+|++++++|+++||+.|++|++|
T Consensus 7 ~~~~~~i~~~l~ED~~-~gDlTt-~~~~~~~~~~~~i~ar~~gi~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i 84 (277)
T PRK05742 7 AEIEANVRRALAEDIG-SGDITA-QLIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVL 84 (277)
T ss_pred HHHHHHHHHHHHhcCC-CCCCCc-cccCCCcEEEEEEEECCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEE
Confidence 4578899999999998 799999 45667888999999999999999999999999999889999999999999999999
Q ss_pred EEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 104 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 104 l~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
++++|++++||++||++||||||||||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 85 ~~i~G~~~~ll~~ER~~ln~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 147 (277)
T PRK05742 85 FHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVAGTQVKLLDTRKTLPGLRLAQKYAV 147 (277)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999 46999999999999999999997
No 11
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.7e-46 Score=320.72 Aligned_cols=142 Identities=36% Similarity=0.523 Sum_probs=134.8
Q ss_pred CCccHHHHHHHHHhhhCCCCC-CcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHh-HcCC-CcEEEEecCCCCeee
Q 031175 22 PTYDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFH-EVDP-SLKVEWSLKDGDHVH 98 (164)
Q Consensus 22 ~~~~~~~~i~~~L~ED~g~~g-DlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~-~l~~-~l~v~~~~~dG~~v~ 98 (164)
++..++++|++||+||+| +| |+||+.++++++++++++++|++||+||++++.++|+ .+|+ +++++|+++||+.++
T Consensus 11 ~~~~~~~~i~~~l~ED~~-~~~DlTt~~l~~~~~~~~a~i~are~gilaG~~~a~~if~~~~~~~~~~v~~~~~dG~~v~ 89 (289)
T PRK07896 11 ELDEARAVIRRALDEDLR-YGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGTDGYEVLDRVEDGARVP 89 (289)
T ss_pred CHHHHHHHHHHHHHHhCC-CCCCCCcCccCCCCCeEEEEEEecCCEEEECHHHHHHHHHHhcCCCceEEEEEcCCCCEec
Confidence 345689999999999998 57 9999999999999999999999999999999999995 6687 789999999999999
Q ss_pred CCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 99 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 99 ~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
||++|++++|++++||++||++||||||||||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 90 ~g~~i~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 157 (289)
T PRK07896 90 PGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAVAGTKAKIRDTRKTLPGLRALQKYAV 157 (289)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999998 46999999999999999999997
No 12
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=2.4e-46 Score=320.48 Aligned_cols=139 Identities=35% Similarity=0.587 Sum_probs=132.4
Q ss_pred cHHHHHHHHHhhhCCC----CCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCC
Q 031175 25 DLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 100 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~----~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G 100 (164)
+++++|+.||+||+|. |||+|| .+++++.++++.|++|++||+||++++.++|+.+|++++++|+++||+.+++|
T Consensus 22 ~~~~~i~~~l~ED~~~~~~~~gDlTt-~~l~~~~~~~~~i~ake~gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~G 100 (296)
T PRK09016 22 DIPAAVAQALREDLGGTVDANNDITA-QLLPADSRSHATIITREDGVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITAN 100 (296)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCcCC-cccCCCCEEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEcCCCCEecCC
Confidence 5889999999999984 599999 56677889999999999999999999999999999889999999999999999
Q ss_pred CEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 101 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 101 ~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 101 ~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 166 (296)
T PRK09016 101 QTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELLAGTNTQLLDTRKTLPGLRSALKYAV 166 (296)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999998 46999999999999999999997
No 13
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=100.00 E-value=2.7e-46 Score=317.83 Aligned_cols=136 Identities=26% Similarity=0.372 Sum_probs=131.3
Q ss_pred HHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEE
Q 031175 26 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 105 (164)
Q Consensus 26 ~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~ 105 (164)
.++.|+.||+||+| +||+||+++++++.++++.+++|++||+||++++.++|+.+| ++++|+++||++|++|++|++
T Consensus 4 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gv~~G~~~~~~i~~~l~--~~~~~~~~dG~~v~~g~~i~~ 80 (277)
T TIGR01334 4 STGLIDNLLLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPSGSRALAGTLLLE 80 (277)
T ss_pred CHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 46779999999998 799999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh----CCCeEeecCCCCcCchhHhhhcC
Q 031175 106 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 106 i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a----~~~~I~~TRKT~PGlR~leKyAV 164 (164)
++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 81 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av 143 (277)
T TIGR01334 81 AKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAV 143 (277)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHH
Confidence 999999999999999999999999999999999998 46999999999999999999997
No 14
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=5.3e-46 Score=314.32 Aligned_cols=136 Identities=54% Similarity=0.860 Sum_probs=131.8
Q ss_pred HHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEe
Q 031175 28 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 28 ~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
+.|++||+||+| +||+||+.+++++..++++|++|++||+||++++.++|+.++++++++|+++||+.+++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 2 AIVRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEE
Confidence 568999999998 7999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 108 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 108 G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
|++++||.+||++||||+|+|||||+|++||++++ +++|++||||+||+|.+|||||
T Consensus 81 G~~~~ll~~Er~~ln~L~~~SGIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (268)
T cd01572 81 GPARSLLTAERTALNFLQRLSGIATLTRRYVEALAGTKARILDTRKTTPGLRLLEKYAV 139 (268)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999994 6999999999999999999997
No 15
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.5e-45 Score=313.51 Aligned_cols=134 Identities=43% Similarity=0.598 Sum_probs=128.8
Q ss_pred HHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEe
Q 031175 28 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 28 ~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
..|++||+||+| +||+||+++++++..++++|++|++||+||++++.++|+.++ ++++|+++||+.|++|++|++++
T Consensus 4 ~~l~~~l~ED~~-~gDlTt~~li~~~~~~~~~~~ar~~gi~aG~~~a~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 4 EYLLRFVEEDAP-FGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHFG--VKVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEecCCeEEeCHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEEEEE
Confidence 568999999998 699999988877889999999999999999999999999997 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh----CCCeEeecCCCCcCchhHhhhcC
Q 031175 108 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 108 G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a----~~~~I~~TRKT~PGlR~leKyAV 164 (164)
|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 81 G~~~~ll~~Er~~ln~l~~~SGIAT~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av 141 (278)
T PRK08385 81 GNARAILLVERTALNIIGRMSGIATETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAI 141 (278)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHH
Confidence 9999999999999999999999999999999998 36899999999999999999997
No 16
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=100.00 E-value=1.4e-45 Score=312.39 Aligned_cols=134 Identities=28% Similarity=0.322 Sum_probs=129.7
Q ss_pred HHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEe
Q 031175 28 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 28 ~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
..|++||+||+| +||+||+++++++.++++.|++|++||+||++++.++|+.++ ++++|+++||+.|+||++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ak~~gv~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 2 AELERLLLEDAP-YGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred HHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEECCCEEEECHHHHHHHHHHcC--cEEEEEcCCCCEecCCCEEEEEE
Confidence 568999999998 799999999998999999999999999999999999999997 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhhcC
Q 031175 108 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 108 G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~----~~~I~~TRKT~PGlR~leKyAV 164 (164)
|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 79 G~~~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (272)
T cd01573 79 GPAAALHLGWKVAQTLLEWASGIATATAEMVAAARAVNPDIVVATTRKAFPGTRKLALKAI 139 (272)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCccchHHHHHHH
Confidence 99999999999999999999999999999999993 6899999999999999999997
No 17
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.3e-45 Score=311.57 Aligned_cols=136 Identities=33% Similarity=0.566 Sum_probs=130.2
Q ss_pred cHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEE
Q 031175 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 104 (164)
Q Consensus 25 ~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il 104 (164)
+++++|+.||+||+| +||+|| .+++.+..++++|++|++||+||++++.++|+.+| ++++|+++||+.+++|++|+
T Consensus 2 ~~~~~i~~~l~ED~~-~~DlTt-~~~~~~~~~~a~i~ar~~~v~~G~~~a~~i~~~l~--~~~~~~~~dG~~v~~g~~i~ 77 (273)
T PRK05848 2 EIKDFLEAALKEDLG-RGDLFE-RLLEKDFKATAKIIAKSEGVFSGEKYALELLEMTG--IECVFTIKDGERFKKGDILM 77 (273)
T ss_pred cHHHHHHHHHHhcCC-CCCccc-cccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEE
Confidence 478999999999998 699999 56666889999999999999999999999999997 99999999999999999999
Q ss_pred EEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCeEeecCCCCcCchhHhhhcC
Q 031175 105 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 105 ~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a--~~~~I~~TRKT~PGlR~leKyAV 164 (164)
+++|++++||++||++||||||+|||||+|++||+++ ++++|++||||+||+|.+|||||
T Consensus 78 ~i~G~a~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (273)
T PRK05848 78 EIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999 46999999999999999999997
No 18
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=100.00 E-value=2.2e-45 Score=310.29 Aligned_cols=133 Identities=45% Similarity=0.722 Sum_probs=128.6
Q ss_pred HHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEee
Q 031175 29 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 29 ~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+|+.||+||+| +||+||+++++++.+++++|++|++||+||++++.++|+.++ ++++|+++||+.+++|++|++++|
T Consensus 1 ~i~~~l~ED~~-~gDlTt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 1 LLDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred ChHHHHhhCCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHcC--eEEEEEeCCCCEecCCCEEEEEEE
Confidence 37899999998 799999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 109 RAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 109 ~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
++++||.+||++||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 78 ~~~~il~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~l~k~Av 135 (265)
T TIGR00078 78 PARSLLTAERTALNFLGRLSGIATATRKYVEAARGTNVRIADTRKTTPGLRLLEKYAV 135 (265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChhhhHHHHHHH
Confidence 9999999999999999999999999999999995 6899999999999999999997
No 19
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=6e-45 Score=307.60 Aligned_cols=135 Identities=50% Similarity=0.752 Sum_probs=130.4
Q ss_pred HHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEe
Q 031175 28 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 28 ~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
+.|+.||+||+| +||+||+++++++..++++|++|++||+||++++.++|+.++ +++++|+++||+.+++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~gD~tt~~~~~~~~~~~~~i~~r~~~v~~G~~~~~~i~~~~~-~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 2 ALLDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHhC-CeEEEEEeCCCCEecCCCEEEEEE
Confidence 578999999998 799999999999999999999999999999999999999996 699999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 108 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 108 G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
|++++||.+||++||||+|+|||||+|++||++++ ++++++||||+||+|.+|||||
T Consensus 80 G~~~~l~~~Er~~ln~L~~~sgIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 138 (269)
T cd01568 80 GPARSLLTAERVALNLLQRLSGIATATRRYVEAARGTKARIADTRKTTPGLRLLEKYAV 138 (269)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999994 6999999999999999999997
No 20
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8e-37 Score=253.59 Aligned_cols=145 Identities=37% Similarity=0.524 Sum_probs=129.1
Q ss_pred CCcccCCCCCCccHHHHHHHHHhhhCCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecC
Q 031175 13 SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 92 (164)
Q Consensus 13 ~~~~~~~~~~~~~~~~~i~~~L~ED~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~ 92 (164)
+--++||.|+....+..+...+.+|-+.|||+++-+- ..+|.+.+|+||++||++++..+|+.++ ++|+|+.+
T Consensus 6 ~~~llPpv~~a~~~d~viwL~ed~p~~~~G~~v~ga~-----~~EA~l~aK~DG~laGVpfAd~iF~q~~--LqVEW~~K 78 (300)
T KOG3008|consen 6 LALLLPPVTLAALVDSVIWLREDCPGLNYGALVSGAG-----PSEAALWAKSDGVLAGVPFADAIFTQLN--LQVEWFLK 78 (300)
T ss_pred hcccCCCCchHHHHHHHHHHHhcCCCCcccceEecCC-----hHHHHhhccCCCeeecchhHHHHHhhhc--eeEEEEec
Confidence 3457889999987777665555555556778876432 3678999999999999999999999998 99999999
Q ss_pred CCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhhcC
Q 031175 93 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 93 dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~----~~~I~~TRKT~PGlR~leKyAV 164 (164)
||+++.|+-.+..++||+..|+.+||++||+|+|+|||||.|+.++++++ +.-|+.||||+||||.+|||++
T Consensus 79 eGs~l~p~~~vaKv~GpAh~IllAERvaLN~l~R~SGIATa~~~~~~aAr~~g~~g~IagTRKTtPGLRlveKy~~ 154 (300)
T KOG3008|consen 79 EGSKLVPVARVAKVRGPAHCILLAERVALNTLARCSGIATAAAAAVEAARGAGWTGHIAGTRKTTPGLRLVEKYGL 154 (300)
T ss_pred CCCeecccceeEeecCcceeeeehHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcceecccccCCcchhhhhhhce
Confidence 99999999999999999999999999999999999999999999999996 6799999999999999999986
No 21
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=6.7e-35 Score=254.20 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhCCCCCCcccccc---cCCCcEEEEEEEee-----CCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeee
Q 031175 27 KGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAK-----EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 98 (164)
Q Consensus 27 ~~~i~~~L~ED~g~~gDlTt~~~---~~~~~~~~a~i~ak-----e~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~ 98 (164)
++.|+.+|.+|. |+|+|++.+ .. +..+++++++| ++||+||++++.++|+.++ +++ ++++||+.+.
T Consensus 9 ~~~~~~~l~~D~--Y~~~t~~~l~~~g~-~~~~~~~i~~R~~p~~~~~i~aG~~~a~~~~~~~~--~~v-~~~~dG~~v~ 82 (343)
T PRK08662 9 EEEIKSGKTTDI--YFERTVEILEHAGK-NPKVVAEVTASSLPKGEWGVFAGLEEVLELLEGKP--VDV-YALPEGTLFD 82 (343)
T ss_pred HHHHHhhhHHHH--HHHHHHHHHHHcCC-CCeEEEEEEEecCCCCCCEEEccHHHHHHHHhhCC--cEE-EEeCCCCEec
Confidence 456889999999 589999987 55 88899999999 9999999999999999886 888 8999999999
Q ss_pred CCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 99 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 99 ~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
||+++++++|+++++|.+||++||+|+|+|||||+|++||++++ ++.+++||||+||+|.++||||
T Consensus 83 ~g~~il~i~G~~~~ll~~Er~~Ln~L~~~SgIAT~t~~~v~aa~~~~v~~~~TRKt~Pg~r~l~k~Av 150 (343)
T PRK08662 83 PKEPVMRIEGPYLEFGIYETALLGILAHASGIATAAARCKEAAGDKPVLSFGARHVHPAIAPMMDRAA 150 (343)
T ss_pred CCceEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCCCHhHHHHHHhhh
Confidence 99999999999999999999999999999999999999999996 4677789999999999999997
No 22
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.98 E-value=1e-32 Score=236.61 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=112.2
Q ss_pred CCCccccccc--CCCcEEEEEEEeeCC--eeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHH
Q 031175 41 RGDVTCMATI--PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 116 (164)
Q Consensus 41 ~gDlTt~~~~--~~~~~~~a~i~ake~--gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ 116 (164)
|.|.|++.+. .++..++++|++|++ ||+||++++.++|+.++ +++. .++||+.|.+|++|++++|+++.+|.+
T Consensus 7 yf~~t~~~~~~~~~~~~~~~~i~~r~~~~~v~aG~~~~~~~~~~~~--~~i~-~~~dG~~v~~g~~i~~i~G~~~~ll~~ 83 (302)
T cd01571 7 YFLRTRKILEKKGPNPTVTMEFTQRSLPWAVLCGLEEVLALLEGLP--VKVY-ALPEGTIFNPKEPVLRIEGPYQDFGEL 83 (302)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEEEcCchHHHhhHHHHHHHHhCCC--eEEE-EeCCCCEECCCCcEEEEEeCHHHHHHH
Confidence 5688887553 457789999999999 99999999999999885 8885 699999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 117 ERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 117 ER~~LN~L~~~SGIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
||++||+|+|+|||||+|++||++++ ++++++||||+||+|.++||||
T Consensus 84 Er~~Ln~L~~~SgIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 133 (302)
T cd01571 84 ETAILGILARASSIATNAARVKLAAGDKPVISFGDRRDHPAIQPMDGRAA 133 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccCCcchhHHHHHHH
Confidence 99999999999999999999999994 6899999999999999999996
No 23
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=99.96 E-value=9.4e-30 Score=182.60 Aligned_cols=88 Identities=47% Similarity=0.754 Sum_probs=81.2
Q ss_pred CCCCCCcccccccCCCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHH
Q 031175 38 AGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 117 (164)
Q Consensus 38 ~g~~gDlTt~~~~~~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~E 117 (164)
+| +||+||+.+++++..+++.+++||+||+||++++.++|+.++ ++++|+++||+.+++|++|++++|++++||++|
T Consensus 1 i~-~gDlTt~~~~~~~~~~~a~i~are~gV~aG~~~~~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~E 77 (88)
T PF02749_consen 1 IG-RGDLTTEALIPPDKTGTATIIAREDGVLAGLEEAEEIFEKLG--LEVEWLVKDGDRVEPGDVILEIEGPARALLTAE 77 (88)
T ss_dssp HT-TG-HHHHHHSCTTSEEEEEEEESSSEEE-SHHHHHHHHHHCT--EEEEESS-TT-EEETTCEEEEEEEEHHHHHHHH
T ss_pred Cc-CCccCcccccCCCCEEEEEEEeCCCEEEECHHHHHHHHhhcc--EEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHH
Confidence 35 799999889999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 031175 118 RVVLNFMQRMS 128 (164)
Q Consensus 118 R~~LN~L~~~S 128 (164)
|++||||||||
T Consensus 78 R~~LN~l~~~S 88 (88)
T PF02749_consen 78 RTALNFLQRLS 88 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999998
No 24
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.96 E-value=8e-29 Score=208.02 Aligned_cols=122 Identities=38% Similarity=0.566 Sum_probs=114.9
Q ss_pred Cccccccc----CCCcEEEEEEEeeCC--eeEEcHHHHHHHHhHcC-CCcEEEEecCCCCeeeCCCEEEEEeechhhhHH
Q 031175 43 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 115 (164)
Q Consensus 43 DlTt~~~~----~~~~~~~a~i~ake~--gVvaG~~~a~~i~~~l~-~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~ 115 (164)
|+|+..+. .++..+++++++|++ +|+||++++.++|+.++ +++.+.+.++||+.+++|+++++++|++.+++.
T Consensus 1 D~y~~~~~~~~~~~~~~~~~~~~~R~~~~~v~~Gl~~~~~~l~~l~~~~~~~~~~~~eG~~v~~g~~vl~i~G~~~~~~~ 80 (281)
T cd00516 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGTVVEPGEPLLTIEGPARELLL 80 (281)
T ss_pred ChhHHHHHhhhCCCCCEEEEEEEEecCCCEEEcCHHHHHHHHHhcCCCCceEEEECCCCCEecCCCEEEEEEEcHHHHHH
Confidence 77877776 678899999999999 99999999999999995 568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeecCCCCcCchhHhhhcC
Q 031175 116 AERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 116 ~ER~~LN~L~~~SGIAT~T~~~V~~a~----~~~I~~TRKT~PGlR~leKyAV 164 (164)
+||++||+|+|+|||||.|+++|+++. ++.+++||||+||+|.++||||
T Consensus 81 ~E~~~Lnil~~~sgiAt~t~~~v~~~~~~~~~~~~~gtRk~~p~~~~~~~~A~ 133 (281)
T cd00516 81 LERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRKTTPGLRLLEKYAV 133 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeecCCCCcchhHHhhHHH
Confidence 999999999999999999999999984 4799999999999999999996
No 25
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.96 E-value=2.9e-28 Score=213.30 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=104.3
Q ss_pred CCcEEEEEEEee-CCeeEEcHHHHHHHHhHcCCCcE--EEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHh
Q 031175 52 LDMEVEAHFLAK-EDGIIAGIALAEMIFHEVDPSLK--VEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMS 128 (164)
Q Consensus 52 ~~~~~~a~i~ak-e~gVvaG~~~a~~i~~~l~~~l~--v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~S 128 (164)
++..++++|++| +++|+||++++.++|+.++.+.+ ..+.++||+.+.||++|++++|++.+++.+||++||+|+|+|
T Consensus 35 ~~~~~~~~~~~R~~~~VlaGleea~~ll~~l~~~~~~~~i~a~~eG~~v~~gepvl~i~G~~~~l~~~Et~iLnlL~~~S 114 (352)
T PRK07188 35 PNNIVTMQFFQRRENAVLCGTDEVIALLKTFAKDPSKLKIRYLKDGDIINPFETVLEIEGPYENFGFLEGIIDGILARRT 114 (352)
T ss_pred CCCeEEEEEEEeCCCeEEecHHHHHHHHHHcCCCccceEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 357899999999 99999999999999999863322 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCeEeecCCCCcCchhHhhhcC
Q 031175 129 GIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 164 (164)
Q Consensus 129 GIAT~T~~~V~~a~--~~~I~~TRKT~PGlR~leKyAV 164 (164)
||||+|++||++++ ++..++||||+||+|.++|||+
T Consensus 115 gIAT~a~r~v~aA~~~~~~~~gTRKt~p~~~~~~~~Aa 152 (352)
T PRK07188 115 SVATNAYNVVQAANEKPVIFMGDRADHYLQQAGDGYAA 152 (352)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecCCCCccchhHhhHHh
Confidence 99999999999994 5788999999999999999996
No 26
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.22 E-value=1.1e-10 Score=105.88 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=95.4
Q ss_pred HHhhhCCCCCCccccccc----CCCcEEEEEEEeeC------CeeEEcHHHHHHHHhHcC--------------------
Q 031175 33 ALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD-------------------- 82 (164)
Q Consensus 33 ~L~ED~g~~gDlTt~~~~----~~~~~~~a~i~ake------~gVvaG~~~a~~i~~~l~-------------------- 82 (164)
.|.-|.. =+|..-.. +.+.++..+++.|. .+|++|++++.+.++.+.
T Consensus 10 ~L~TD~Y---kltm~~~~~~~~~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~~l~~~~~f~~~f~ 86 (464)
T PRK09243 10 ALLTDLY---ELTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLGIFDEDFL 86 (464)
T ss_pred HHHHHHH---HHHHHHHHHHhCCCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHH
Confidence 4556652 25554323 55667888888877 369999999999888650
Q ss_pred -------CCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEee--cCCCC
Q 031175 83 -------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE--TRKTA 153 (164)
Q Consensus 83 -------~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~~~~I~~--TRKT~ 153 (164)
...+| +.++||+.+.+|+++++|+|+..+....|+.+||+|+|.|+|||+++++++++.+.++.+ ||..+
T Consensus 87 ~~L~~~~f~~~I-~a~pEG~~v~~~epvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~r~~~~a~~~~v~dFG~Rr~~ 165 (464)
T PRK09243 87 DYLRNFRFTGDV-RAVPEGELVFPNEPLLRVEGPLAEAQLLETLLLNIINFQTLIATKAARIVSAAGGRPLLEFGSRRAQ 165 (464)
T ss_pred HHHHhCCCCCeE-EEEeCCccccCCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEecccccCC
Confidence 01366 577899999999999999999999999999999999999999999999999987666655 99888
Q ss_pred cC
Q 031175 154 PT 155 (164)
Q Consensus 154 PG 155 (164)
+-
T Consensus 166 ~~ 167 (464)
T PRK09243 166 GP 167 (464)
T ss_pred ch
Confidence 64
No 27
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.21 E-value=1.7e-10 Score=100.45 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=87.3
Q ss_pred CCcEEEEEEEeeC------CeeEEcHHHHHHHHhHcC---------------------------CCcEEEEecCCCCeee
Q 031175 52 LDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVH 98 (164)
Q Consensus 52 ~~~~~~a~i~ake------~gVvaG~~~a~~i~~~l~---------------------------~~l~v~~~~~dG~~v~ 98 (164)
++.+++.+++.|. .+|++|++.+.+.++.+. ..+++ +.++||+.+.
T Consensus 21 ~~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l~~~~~~~~~~~~~L~~~~~~v~i-~a~~EG~~v~ 99 (327)
T cd01570 21 HNKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGIFDEEFLDYLRGFRFTGTI-YAIPEGEVVF 99 (327)
T ss_pred CCCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceE-EEecCCceec
Confidence 4567888888887 266899999988777550 12566 4589999999
Q ss_pred CCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEee--cCCCCcC
Q 031175 99 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE--TRKTAPT 155 (164)
Q Consensus 99 ~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~~~~I~~--TRKT~PG 155 (164)
+|+++++|+|+.......|+.+||+++|.|+|||+++++++++.+.++.+ ||..++-
T Consensus 100 ~~~pvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~~~~~~~~~~~~~dFG~Rr~~s~ 158 (327)
T cd01570 100 PNEPLLTVEGPLIEAQLLETLLLNLINFQTLIATKAARVRLAAGGRPLLEFGLRRAQGP 158 (327)
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcc
Confidence 99999999999999999999999999999999999999999987777766 9988764
No 28
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=98.98 E-value=6.1e-09 Score=90.56 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=87.0
Q ss_pred CCcEEEEEEEeeCC------eeEEcHHHHHHHHhHcCC---------------------------CcEEEEecCCCCeee
Q 031175 52 LDMEVEAHFLAKED------GIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVH 98 (164)
Q Consensus 52 ~~~~~~a~i~ake~------gVvaG~~~a~~i~~~l~~---------------------------~l~v~~~~~dG~~v~ 98 (164)
++..+..+++.|.. .+++|++.+.+.+..+-. .+++ +.++||+.+.
T Consensus 20 ~~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i-~a~~eG~~~~ 98 (343)
T cd01567 20 PNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLLIFGEFFLYLLFLGKLPLEI-YALPEGTVVF 98 (343)
T ss_pred CCeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCcHHHHHHhhcCCCceEE-EEeCCccccc
Confidence 35678888999884 799999999988765411 2344 3789999999
Q ss_pred CCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC------------C--eEeecCCCCcC
Q 031175 99 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP------------A--TILETRKTAPT 155 (164)
Q Consensus 99 ~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~~------------~--~I~~TRKT~PG 155 (164)
+++++++|+|+..+....|+.+||+++++|++||.+++.++++.. . ..++||+++|.
T Consensus 99 ~~~~~i~IeG~~~~~~~~Et~lL~i~~~~t~~at~~~~~~~~a~~~~~~~~~~~~~~~~~~dFGtRr~~s~ 169 (343)
T cd01567 99 PKEPLLTIEGPWPEAGLLETPLLAIWNEATSIATKAARKKLAAGGLLETKDNLEELGFKLHDFGTRRRHSP 169 (343)
T ss_pred CCCeEEEEEechHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccCCCeEEecCCCCcCCh
Confidence 999999999999999999999999999999999999999998843 4 44669999984
No 29
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=98.76 E-value=1e-07 Score=86.39 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=84.9
Q ss_pred CcEEEEEEEeeC------CeeEEcHHHHHHHHhHcC---------------------------CCcEEEEecCCCCeeeC
Q 031175 53 DMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVHK 99 (164)
Q Consensus 53 ~~~~~a~i~ake------~gVvaG~~~a~~i~~~l~---------------------------~~l~v~~~~~dG~~v~~ 99 (164)
..+++.+++.|. ..|++|++.+.+.++.+- ..+++. .++||+.|.+
T Consensus 22 ~~~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I~-A~~EG~~v~~ 100 (443)
T TIGR01513 22 NQPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIEYLASLGIFDDAFLDYLREFRFSGTVR-ALPEGSLVFP 100 (443)
T ss_pred CceEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCcEEE-EecCCccccC
Confidence 345888888877 457799999988777630 124453 4899999999
Q ss_pred CCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEee--cCCCCc
Q 031175 100 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE--TRKTAP 154 (164)
Q Consensus 100 G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~~~~I~~--TRKT~P 154 (164)
++++++|+|+..+....|..+||++.+.|.|||++++++.++.+.++.+ ||..++
T Consensus 101 ~ep~l~Iegp~~~~~llEt~lL~~i~~~s~iATka~r~~~aa~~~~l~dFG~Rr~~~ 157 (443)
T TIGR01513 101 NEPLLQVEGPLIEAQLLETLVLNIINFQTLIATKAARIVLAAGGKPLLEFGLRRAQG 157 (443)
T ss_pred CcEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCc
Confidence 9999999999999999999999999999999999999999987777765 998887
No 30
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=98.73 E-value=1.5e-07 Score=85.33 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=82.6
Q ss_pred cEEEEEEEeeC------CeeEEcHHHHHHHHhHcCC---------------------------CcEEEEecCCCCeeeCC
Q 031175 54 MEVEAHFLAKE------DGIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVHKG 100 (164)
Q Consensus 54 ~~~~a~i~ake------~gVvaG~~~a~~i~~~l~~---------------------------~l~v~~~~~dG~~v~~G 100 (164)
.++..+++.|. ..|+||++.+.+.++.+-- ..+| +.++||+.|.++
T Consensus 26 ~~~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I-~A~~EG~~v~~~ 104 (443)
T PRK12484 26 APATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLRYLRGLNQFSEEFLAWLAGLRFTGDV-RAVPEGTVVFPN 104 (443)
T ss_pred CeEEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCceE-EEEeCCeeecCC
Confidence 34777777777 4579999999888886520 0145 467899999999
Q ss_pred CEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEee--cCCCC
Q 031175 101 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE--TRKTA 153 (164)
Q Consensus 101 ~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~~~~I~~--TRKT~ 153 (164)
+++++|+|+..+....|..+||++.+.|.|||++++++.++.+..+.+ ||..+
T Consensus 105 ep~l~Iegp~~e~~llET~lL~il~~~s~iATka~ri~~aa~~~~l~dFG~Rr~~ 159 (443)
T PRK12484 105 EPLLEVTAPLIEAQLVETFLLNQINHQSLIASKAARCVLAAAGRPVVDFGARRAH 159 (443)
T ss_pred cEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCC
Confidence 999999999999999999999999999999999999999987766765 88766
No 31
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=98.65 E-value=2.4e-07 Score=83.12 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=102.9
Q ss_pred ccHHHHHHHHHhhhCCCCCCccccccc----CCCcEEEEEEEeeCC------eeEEcHHHHHHHHhHcCCC---------
Q 031175 24 YDLKGVVKLALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS--------- 84 (164)
Q Consensus 24 ~~~~~~i~~~L~ED~g~~gDlTt~~~~----~~~~~~~a~i~ake~------gVvaG~~~a~~i~~~l~~~--------- 84 (164)
...+..+...|.=|.. . +|....+ +.+..+..+++.|.+ .++||++++.+.++.+--.
T Consensus 5 ~~~~~~i~~~L~TD~Y--k-ltm~q~~~~~~~~~~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~ 81 (405)
T COG1488 5 FKSEPDIKSLLDTDLY--K-LTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIAYLRS 81 (405)
T ss_pred cchhHHHhhhhHhHHH--H-HHHHHHHHhhCCCccEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHHHHhh
Confidence 3456677777888873 2 5553222 333578888999986 7899999999999983100
Q ss_pred --------------cEEE-EecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh-CCCeEee
Q 031175 85 --------------LKVE-WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA-HPATILE 148 (164)
Q Consensus 85 --------------l~v~-~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a-~~~~I~~ 148 (164)
++++ +.+++|+.+.+.+++++++|+..+....|-.+||++.+.|.|||++.++++++ .+.++.+
T Consensus 82 ~~~~~~~fl~~L~~f~~~i~a~~eg~~~~~~ep~l~i~G~~~e~~l~Et~lL~ii~~~~~iatka~r~~~~a~~~~~v~d 161 (405)
T COG1488 82 LPFFKPDFLNYLRRFPLDIYAVPEGTVVFPNEPVLRIEGPYLETILLETPLLGIINEASLIATKAARVKDAAGKGFPVLD 161 (405)
T ss_pred cccccHHHHHHHhhCCCceEEEeccccccCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Confidence 2333 37899999999999999999999999999999999999999999999999999 5777765
Q ss_pred --cCCCCcC
Q 031175 149 --TRKTAPT 155 (164)
Q Consensus 149 --TRKT~PG 155 (164)
||..+|-
T Consensus 162 FGtRr~~~~ 170 (405)
T COG1488 162 FGTRRRHSA 170 (405)
T ss_pred ccCcccccc
Confidence 9998886
No 32
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=98.26 E-value=7.6e-06 Score=74.68 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=64.5
Q ss_pred HHHHHhHcCCCcEEE-EecCCCCeeeCCCEEEEEeechhhhH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC------
Q 031175 74 AEMIFHEVDPSLKVE-WSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH------ 142 (164)
Q Consensus 74 a~~i~~~l~~~l~v~-~~~~dG~~v~~G~~il~i~G~a~~ll----~~ER~~LN~L~~~SGIAT~T~~~V~~a~------ 142 (164)
...+++.++..+.++ +.++||+.|.+++++++|+|+..+.. ..|..+||++.|.|.|||.+++++.++.
T Consensus 85 ~~~~~~~~~g~~p~~I~AvpEGtvv~~~~Pll~V~~~~~e~~wL~~~lET~lL~~i~~~s~vAT~A~r~~~~~~~~~~~t 164 (463)
T PRK09198 85 WRRIVDKYGGYLPLRIKAVPEGSVVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVATISWEYKQLIRQYLEKT 164 (463)
T ss_pred HHHHHHhcCCCCceEEEEecCCceecCCCCEEEEEeCcHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444444332223333 37999999999999999999999988 7999999999999999999999999874
Q ss_pred -------CCeEee--cCCCCcC
Q 031175 143 -------PATILE--TRKTAPT 155 (164)
Q Consensus 143 -------~~~I~~--TRKT~PG 155 (164)
+-++.| .|-+++-
T Consensus 165 ~~~~~~~~~~l~dFG~Rr~~~~ 186 (463)
T PRK09198 165 ADDLDFLPFQLHDFGARGMSSL 186 (463)
T ss_pred ccccccCCCeEEecCCCCCCch
Confidence 445554 7777664
No 33
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=98.01 E-value=4.7e-05 Score=68.57 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=52.8
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeechhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADLAH 142 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~a~~l----l~~ER~~LN~L~~~SGIAT~T~~~V~~a~ 142 (164)
++| ..++||+.|.++++|++|+|+..+. --.|..+||.+.+.|.|||.++++++++.
T Consensus 96 ~~I-~AvpEGtvv~~~~Pll~Ve~t~~e~~Wl~~~lET~lL~~iw~~s~vAT~A~r~k~~~~ 156 (407)
T cd01569 96 IEI-RAVPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVATISREYKKILR 156 (407)
T ss_pred eEE-EEecCCceecCCCCEEEEEecchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4899999999999999999999988 88999999999999999999999999984
No 34
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=97.78 E-value=0.00013 Score=66.89 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=51.2
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeechhhhH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH 142 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~a~~ll----~~ER~~LN~L~~~SGIAT~T~~~V~~a~ 142 (164)
+++ +.++||+.|.+++++++|+|+..++. ..|..+||++.+.|.|||.++++++++.
T Consensus 101 ~~I-~AvpEGtvvf~~~Pll~Ve~~~~~f~w~~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 161 (470)
T PHA02594 101 IEV-RAVPEGTVVPVKVPVLTIENTHPDFFWLAGYLETVILRGVWYPSTVATLSRECKKILK 161 (470)
T ss_pred ceE-EEecCCceecCCCCEEEEEeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 48999999999999999999987554 7999999999999999999999999973
No 35
>PLN02885 nicotinate phosphoribosyltransferase
Probab=97.74 E-value=0.0003 Score=65.50 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=57.0
Q ss_pred ecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC-CCeEee--cCCC
Q 031175 90 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH-PATILE--TRKT 152 (164)
Q Consensus 90 ~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a~-~~~I~~--TRKT 152 (164)
.++||+.|.+++++++|+|+.......|..+||++.+.|.|||.+++++.++. +..+++ ||..
T Consensus 105 A~~EG~lvf~~eP~i~IeGp~~~~~LlEt~LL~iI~~~s~iAT~aar~~~aa~~~~~v~eFG~RRa 170 (545)
T PLN02885 105 AIPEGSVVFPRVPLMRIEGPLAVVQLLETTFLTLVNYASLVATNAARHRLVAGKSKVLLEFGLRRA 170 (545)
T ss_pred ecCCCcEecCCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCccC
Confidence 47999999999999999999999999999999999999999999999999984 455544 8877
No 36
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=96.84 E-value=0.0058 Score=54.70 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCCeeeC----CCEEEEEeechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCeEe
Q 031175 92 KDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATIL 147 (164)
Q Consensus 92 ~dG~~v~~----G~~il~i~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~V~~a-----~~~~I~ 147 (164)
++|..+.+ |+++++|+|+..+....|-.+||+++++ +=|||++.+++.++ .+.+++
T Consensus 88 ~e~~~v~~~~~~~~~~i~i~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~~~~~~atKa~r~~~~a~~~~~~~~~~~ 167 (377)
T cd01401 88 PEEVVVRLDTGKGQLDIRISGPWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLLEEAKRRDLNGFRFS 167 (377)
T ss_pred cCeeEEecCCCCCeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhhcccCCCCeEE
Confidence 58888887 9999999999999999999999999985 45999999999988 567776
Q ss_pred e--cCCCCc
Q 031175 148 E--TRKTAP 154 (164)
Q Consensus 148 ~--TRKT~P 154 (164)
+ ||..++
T Consensus 168 eFGtRRr~~ 176 (377)
T cd01401 168 DFGTRRRFS 176 (377)
T ss_pred EecccccCC
Confidence 6 998887
No 37
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=95.91 E-value=0.058 Score=48.71 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=45.3
Q ss_pred CCEEEEEeechhhhHHHHHHHHHHHHH-----HhH----------HHHHHHHHHHH--hCCCeEee--cCCCC
Q 031175 100 GLQFGKVSGRAHSIVIAERVVLNFMQR-----MSG----------IATLTRAMADL--AHPATILE--TRKTA 153 (164)
Q Consensus 100 G~~il~i~G~a~~ll~~ER~~LN~L~~-----~SG----------IAT~T~~~V~~--a~~~~I~~--TRKT~ 153 (164)
|+++++|+|+..+....|..+||++++ .++ +||++.+++++ +.+..+++ ||..+
T Consensus 106 ~~~~i~I~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~a~~~iatKa~r~~~a~~~~~~~~~eFGtRR~~ 178 (400)
T PRK05321 106 GQLDIRIEGPWLETILWEVPLLAIISELYFRARSPEVLYAQAKRRLWEKIELLKALPDLSGFKIADFGTRRRF 178 (400)
T ss_pred CeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHhccccCCCeEEEecccccc
Confidence 899999999999999999999999998 544 89999999776 22456655 88776
No 38
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=94.04 E-value=0.25 Score=44.58 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=46.6
Q ss_pred CCCEEEEEeechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-------CCeEee--cCCC
Q 031175 99 KGLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-------PATILE--TRKT 152 (164)
Q Consensus 99 ~G~~il~i~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~V~~a~-------~~~I~~--TRKT 152 (164)
.|+++++|+|+-.+....|-.+||+++++ +-|||++.+++.++. +.++.+ ||..
T Consensus 101 eg~~~i~i~Gp~~~~~L~EtplLaiine~~~~~~~~~~~~~~~~~~iatKa~rl~~~a~~~~~~~~~~~~~eFGtRRr 178 (394)
T TIGR01514 101 KGKLDIRISGSWRDTILYEIPLLAIISELYFRFRDAEADYEQQLEVLESKLDQLKAEIAAETMFENGFRFSEFGTRRR 178 (394)
T ss_pred CCcEEEEEEeehHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhcccccCCCCeeEeeccccc
Confidence 47999999999999999999999999983 669999999999872 566655 8876
No 39
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=93.75 E-value=0.07 Score=34.17 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.6
Q ss_pred EEEecCCCCeeeCCCEEEEEeechh
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGRAH 111 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~a~ 111 (164)
.++++++|+.|++|++|+++.-+..
T Consensus 14 ~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 14 ESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEEecCCCEEcCCCEEEEECcHHH
Confidence 4579999999999999999987643
No 40
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=91.44 E-value=0.56 Score=32.70 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=28.4
Q ss_pred cCCCcEEEEecCCCCeeeCCCEEEEEeechhh-hHHHHH
Q 031175 81 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS-IVIAER 118 (164)
Q Consensus 81 l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~-ll~~ER 118 (164)
.|+..-+.++++=|++|++||+++++..+-.. +-.++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~~~a~~ 66 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYANDEARLEEAVE 66 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESSSSHHHHHHH
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCChHHHHHHHH
Confidence 34667788999999999999999999999887 433333
No 41
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=90.41 E-value=0.3 Score=33.41 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+|++++|+.|++|++|++++-.
T Consensus 18 ~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 18 TKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEESSSTTEEESTTSEEEEEESS
T ss_pred eEEEECCCCEEEcCceEEEEEcC
Confidence 45999999999999999999753
No 42
>PRK06748 hypothetical protein; Validated
Probab=90.10 E-value=0.39 Score=34.37 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=21.6
Q ss_pred cEEEEecCCCCeeeCCCEEEEEee
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
.=++|++++|+.|++||+|++++-
T Consensus 14 ~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 14 KVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 346899999999999999999987
No 43
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=89.97 E-value=0.42 Score=32.26 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.2
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeech
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
-=.+|++++|+.|++|++++.++-.-
T Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 12 SVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEecc
Confidence 34678999999999999999987653
No 44
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=85.32 E-value=6.1 Score=36.89 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=49.9
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhHcC----CCcEEEEecCCCCeeeCCCEEEEEeechhhhHHH
Q 031175 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 116 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~l~----~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ 116 (164)
....+..+.|.++|.|..++. +..+...+| ++.-+.++++=|++|++||+++++..+....+..
T Consensus 409 ~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~~~l~~ 478 (493)
T TIGR02645 409 AGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESEGELDY 478 (493)
T ss_pred CCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCHHHHHH
Confidence 345688999999999999653 445555553 5667888999999999999999999776665544
No 45
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=84.71 E-value=14 Score=33.87 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=46.2
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhHcC-----------CCcEEEEecCCCCeeeCCCEEEEEeechhhh
Q 031175 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 113 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~l~-----------~~l~v~~~~~dG~~v~~G~~il~i~G~a~~l 113 (164)
..+.+..+.|.++|.|..++- +-.+...+| +..-+.++++-|++|++||+|+++..+....
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~~~ 404 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANRENV 404 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCChHHH
Confidence 445788999999999998653 334444443 3566888999999999999999999554443
No 46
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=82.97 E-value=15 Score=33.76 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=46.3
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhH-----------cCCCcEEEEecCCCCeeeCCCEEEEEeechhhh
Q 031175 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 113 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~-----------l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~l 113 (164)
....+..+.|+++|.|.-++- +..+... .|+..-++++++-|++|++||+++++..+-...
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~~~ 409 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDEER 409 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCHHH
Confidence 345688899999999988543 3344422 346777899999999999999999999655444
No 47
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=82.92 E-value=8.5 Score=35.02 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.6
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhH-----------cCCCcEEEEecCCCCeeeCCCEEEEEeechhh
Q 031175 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 112 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~-----------l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ 112 (164)
....+..+.|.++|.|..++- +-.+... .|+..-+.++++-|++|++||++++++.+-..
T Consensus 329 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~~~ 401 (405)
T TIGR02644 329 KAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSDPI 401 (405)
T ss_pred CCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCCHh
Confidence 345688899999999998553 2333333 35567788999999999999999999966443
No 48
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=82.42 E-value=1.3 Score=39.91 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++|+++.||.|++||+|++|+-+
T Consensus 20 ~~W~~k~GD~V~~gd~L~eVeTD 42 (404)
T COG0508 20 VEWLKKVGDKVKEGDVLVEVETD 42 (404)
T ss_pred EEEecCCCCeecCCCeeEEEEcC
Confidence 78999999999999999999865
No 49
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=82.17 E-value=2.1 Score=28.54 Aligned_cols=24 Identities=21% Similarity=0.190 Sum_probs=19.1
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
=+.|+++.|+.|++|+++++++-.
T Consensus 12 i~~~~v~~G~~V~~g~~l~~ve~~ 35 (70)
T PRK08225 12 VWKIVVKVGDTVEEGQDVVILESM 35 (70)
T ss_pred EEEEEeCCCCEECCCCEEEEEEcC
Confidence 355788889999999999887653
No 50
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=81.68 E-value=1.9 Score=27.39 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EE-EEecCCCCeeeCCCEEEEEee
Q 031175 86 KV-EWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 86 ~v-~~~~~dG~~v~~G~~il~i~G 108 (164)
.+ +|+++.|+.+++|+.+++++.
T Consensus 9 ~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 9 TVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 45 589999999999999999975
No 51
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=81.43 E-value=1.8 Score=36.47 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=13.1
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++|++++|+.|++||+|++++..
T Consensus 20 ~~~~~~~g~~v~~~~~~~~~e~~ 42 (371)
T PRK14875 20 AGWLVQEGDEVEKGDELLDVETD 42 (371)
T ss_pred EEEEcCCCCEeCCCCEEEEEEec
Confidence 44555566666666655555544
No 52
>PRK04350 thymidine phosphorylase; Provisional
Probab=81.06 E-value=13 Score=34.79 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=49.4
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhHc----CCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHH
Q 031175 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV----DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 116 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~l----~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ 116 (164)
..+.+..+.|.++|.|..++- +..+...+ |++.-+.++++=|++|++||+++++..+....+..
T Consensus 401 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~~~l~~ 470 (490)
T PRK04350 401 LGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESEGELDY 470 (490)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCHHHHHH
Confidence 345788899999999999653 44455554 45667889999999999999999999766655443
No 53
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=80.46 E-value=14 Score=32.79 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=41.2
Q ss_pred EEEeeCCeeEEcHHH--HHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEe
Q 031175 59 HFLAKEDGIIAGIAL--AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 59 ~i~ake~gVvaG~~~--a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
.+.++..|.+..++. ..++.+..+ +.++..++=|+.|.+|++++++.
T Consensus 197 ~i~a~~~GYvq~Id~~~L~~~a~~~~--~~i~l~~~~G~fV~~g~pl~~v~ 245 (371)
T PF10011_consen 197 PIRAPRSGYVQAIDYDRLVELAEEHD--VVIRLEVRPGDFVVEGTPLARVW 245 (371)
T ss_pred EEecCCCcEEEEecHHHHHHHHHHCC--cEEEEEeCCCCeECCCCeEEEEe
Confidence 499999999999866 666666665 89999999999999999999995
No 54
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=79.73 E-value=14 Score=34.57 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=49.0
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhHc----CCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHH
Q 031175 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV----DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 116 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~l----~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ 116 (164)
....+..+.|.++|.|..++- +..+...+ |++.-+.++++=|++|++||++++++.+....+..
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~~~l~~ 479 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESEWRLEN 479 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCHHHHHH
Confidence 345688899999999999653 34445554 35667888999999999999999999766555443
No 55
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=78.00 E-value=12 Score=34.50 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=48.6
Q ss_pred CcEEEEEEEeeCCeeEEcHHH--HHHHHhHcC-----------CCcEEEEecCCCCeeeCCCEEEEEeechhhhHHH
Q 031175 53 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 116 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~--a~~i~~~l~-----------~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ 116 (164)
..+.+..+.|.++|++..++- +-.+...+| +..-+..+++-|+.|++|++|+++.-..+..+..
T Consensus 332 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~~~~~ 408 (435)
T COG0213 332 VAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEEILDE 408 (435)
T ss_pred cCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCccchHH
Confidence 456789999999999998653 333333443 3456788999999999999999999966665543
No 56
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=77.59 E-value=1.9 Score=39.80 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.4
Q ss_pred EEEEecCCCCeeeCCCEEEEEeech
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
=+.|.+++||.+.+||+|++|+=+=
T Consensus 55 IvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 55 IVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred eeeEeeccCCccCCCceEEEEeccc
Confidence 3789999999999999999998663
No 57
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=76.28 E-value=18 Score=33.31 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=46.6
Q ss_pred CcEEEEEEEeeCCeeEEcHHHHH--HHH-----------hHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhH
Q 031175 53 DMEVEAHFLAKEDGIIAGIALAE--MIF-----------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 114 (164)
Q Consensus 53 ~~~~~a~i~ake~gVvaG~~~a~--~i~-----------~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll 114 (164)
..+.+..+.|+++|.|.-++-.. .+. ...|+..-+.++++=|++|++||+++++..+-...+
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~ 409 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAADESDA 409 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCCHHHH
Confidence 34568899999999999865432 222 123456778899999999999999999997655443
No 58
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=76.17 E-value=3.1 Score=32.04 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.5
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031175 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
+..+++.||.|++||+++.++
T Consensus 82 ~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 82 YKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred EEEeeccCCEEcCCCEEEEEE
Confidence 346899999999999999887
No 59
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=75.18 E-value=1.6 Score=39.24 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=54.0
Q ss_pred HHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 031175 75 EMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 141 (164)
Q Consensus 75 ~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a 141 (164)
.+.++.++.+..-+-.+.+|+.+-++-++++|+|+-......|-..||++.++|=.+|.+.+..+..
T Consensus 85 ~eyl~~l~~s~~~~~aIsegSvvf~k~pli~i~Gp~~~~~l~E~plLnLvs~a~~~~~da~~~r~~~ 151 (420)
T KOG2511|consen 85 YEYLRGLNCSDHPEEAISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSEAYFKFVDADWHREVQ 151 (420)
T ss_pred HHHHhhcCCCcCchhhcccCceeccCCceEEEecchhheeeeechHHHHhhhHHheeeccccchhcc
Confidence 3344433322233347889999999999999999999999999999999999999999988877765
No 60
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=75.18 E-value=5.5 Score=26.34 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.2
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-.+|++++|+.+++|+.+++++..
T Consensus 15 ~~~~~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 15 TVVKWLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred EEEEEEcCCcCEECCCCEEEEEEeC
Confidence 3455899999999999999998764
No 61
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=75.13 E-value=1.9 Score=35.49 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=17.3
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeech
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
.=-+++++||+.|++|++++++.-.-
T Consensus 11 ~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 11 IVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEEEEccCcCEEeCCCEEEEEEeec
Confidence 33456899999999999999998654
No 62
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=74.50 E-value=3.9 Score=27.18 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.5
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031175 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
.++++++|+.+.+|+.|++++
T Consensus 50 ~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 50 KKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEecCCCEECCCCEEEEEC
Confidence 457899999999999999874
No 63
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=74.20 E-value=8.9 Score=24.21 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=24.6
Q ss_pred EEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEE
Q 031175 56 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 106 (164)
Q Consensus 56 ~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i 106 (164)
....+.++.+|++. .+++.+|+.+.+|+.++++
T Consensus 35 ~~~~i~ap~~G~v~------------------~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 35 MENEVTAPVAGVVK------------------EILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEEEeCCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 34556666666665 3577899999999999874
No 64
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=73.96 E-value=3.9 Score=32.26 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.4
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.=++|++++|+.|++||.++.++..
T Consensus 94 ~I~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 94 KILRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred EEEEEEeCCCCEEcCCCEEEEEeec
Confidence 3357899999999999999999754
No 65
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=72.98 E-value=3.9 Score=37.24 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=11.4
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031175 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
++|++++||.|++||+|++++
T Consensus 62 ~~w~v~~Gd~V~~Gd~L~~vE 82 (418)
T PTZ00144 62 VEWKKKVGDYVKEDEVICIIE 82 (418)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 445555555555555555554
No 66
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=70.59 E-value=5 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.4
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++.+++.|++|++||.|+++-
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4677899999999999999985
No 67
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=70.42 E-value=15 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEecCCCCeeeCCCEEEEEeech
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
.++++++|+.|++|++|+++....
T Consensus 28 ~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 28 KKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred EEEEccCCCEecCCcEEEEecCcH
Confidence 556899999999999999999863
No 68
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=69.85 E-value=5.5 Score=33.15 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=18.9
Q ss_pred EEEEecCCCCeeeCCCEEEEEeechh
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVSGRAH 111 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~a~ 111 (164)
.+++++++|+.|++|++|+++.-+.-
T Consensus 31 ~v~~~v~~G~~V~kG~~L~~ld~~~~ 56 (328)
T PF12700_consen 31 RVSVNVKEGDKVKKGQVLAELDSSDL 56 (328)
T ss_dssp EEEE-S-TTSEEETT-EEEEEE-HHH
T ss_pred EEEEEeCCcCEECCCCEEEEEEChhh
Confidence 44889999999999999999987643
No 69
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=68.71 E-value=5.4 Score=36.88 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=11.8
Q ss_pred EecCCCCeeeCCCEEEEEe
Q 031175 89 WSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~ 107 (164)
+++++|+.|..|++|+.++
T Consensus 148 ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 148 FLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred EEeCCCCEecCCCEEEEec
Confidence 4556666666666666664
No 70
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=67.04 E-value=7.7 Score=29.86 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.3
Q ss_pred EEEecCCCCeeeCCCEEEEEee
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G 108 (164)
.+|++.+|+.|++|++|+.++-
T Consensus 73 ~~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 73 LKVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred EEEEeCCCCEECCCCEEEEEec
Confidence 4689999999999999999874
No 71
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=66.87 E-value=6.6 Score=29.99 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.2
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-+++++++|+.|++|+.|+++-
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4677899999999999999874
No 72
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=64.72 E-value=7.4 Score=31.25 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.3
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++.++++|+.|++||.|+++-
T Consensus 103 gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 103 GFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred ceEEEecCCCEEeCCCEEEEEc
Confidence 3677899999999999999884
No 73
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=64.54 E-value=19 Score=25.56 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=26.7
Q ss_pred eEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 67 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 67 VvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+--|+.... .+.+|. +..-++.+.|+.|++|++++++++.
T Consensus 16 ~~lGlt~~~--~~~lG~-i~~i~~~~~G~~v~~g~~l~~iEs~ 55 (96)
T cd06848 16 ATVGITDYA--QDLLGD-IVFVELPEVGTEVKKGDPFGSVESV 55 (96)
T ss_pred EEEeeCHHH--HhhCCC-EEEEEecCCCCEEeCCCEEEEEEEc
Confidence 444543322 333452 4554577779999999999999976
No 74
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=64.09 E-value=7.8 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=13.2
Q ss_pred EecCCCCeeeCCCEEEEEe
Q 031175 89 WSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~ 107 (164)
+++++|+.|+.|++|+.++
T Consensus 57 i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 57 ILFKEGDTVESGQVLAILE 75 (403)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 4567777777777777775
No 75
>PRK07051 hypothetical protein; Validated
Probab=63.32 E-value=10 Score=26.06 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.7
Q ss_pred EEecCCCCeeeCCCEEEEEe
Q 031175 88 EWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~ 107 (164)
++.+++|+.|++|++|+++.
T Consensus 60 ~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 60 EFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEcCCcCEECCCCEEEEEe
Confidence 56889999999999999874
No 76
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=62.87 E-value=6.7 Score=30.23 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=17.1
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++++++.|++|++|++++++-
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-
T ss_pred ceEEEEeCCCEEECCCEEEEEc
Confidence 4778999999999999999874
No 77
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=62.40 E-value=7.1 Score=33.03 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEecCCCCeeeCCCEEEEEeech
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++++++|+.|++|++|+++.-+.
T Consensus 55 ~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 55 EVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred EEEeCCCCEEcCCCEEEEECchH
Confidence 46899999999999999998654
No 78
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=61.03 E-value=8.7 Score=30.66 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++.++++|+.|++||.++++-
T Consensus 88 gF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 88 GFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred ceEEEeeCCCEEccCCEEEEEC
Confidence 3677899999999999999874
No 79
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=60.89 E-value=9 Score=34.60 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=14.6
Q ss_pred EecCCCCeeeCCCEEEEEeec
Q 031175 89 WSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~G~ 109 (164)
+++++|+.|..|++|++++-.
T Consensus 59 i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 59 ILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred EEeCCCCEeCCCCEEEEEecC
Confidence 456777777777777777543
No 80
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=60.52 E-value=8.9 Score=34.01 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.0
Q ss_pred EEecCCCCeeeCCCEEEEEeech
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++++++|+.|++||+|+++.-+-
T Consensus 74 ~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 74 KVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEcCCCCEECCCCEEEEECcHH
Confidence 46899999999999999998653
No 81
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=60.48 E-value=7.9 Score=33.23 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEecCCCCeeeCCCEEEEEeech
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
.++++++|+.|++|++|+++.-+-
T Consensus 59 ~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 59 TQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEEeCCcCEEcCCCEEEEECcHH
Confidence 456899999999999999998754
No 82
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=59.79 E-value=8.7 Score=33.10 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++++++|+.|++|++|+++.-.
T Consensus 61 ~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 61 ELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEeCCCCEEcCCCEEEEECcH
Confidence 4589999999999999999865
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=58.84 E-value=7.8 Score=33.52 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.0
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeechh
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGRAH 111 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~a~ 111 (164)
.=.++++++|+.|++|++++++.-...
T Consensus 53 ~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 53 IVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred EEEEEEeCCCCEecCCCeEEEEccchh
Confidence 344789999999999999999987754
No 84
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=58.75 E-value=10 Score=32.45 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEecCCCCeeeCCCEEEEEeech
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
.++++++|+.|++|++|+++..+.
T Consensus 55 ~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 55 ASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEEcCCCCEEcCCCEEEEEChHH
Confidence 456899999999999999998873
No 85
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=58.66 E-value=8 Score=33.54 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.|+++.|+.|++||+|+.++-.
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred cceeCCCCEecCCCEEEEEEee
Confidence 5899999999999999999864
No 86
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=57.50 E-value=11 Score=25.52 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=27.2
Q ss_pred cEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEE
Q 031175 54 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 106 (164)
Q Consensus 54 ~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i 106 (164)
.+....+.|..+|++. ++++++|+.|..|++|++|
T Consensus 40 ~K~~~~v~a~~~G~i~------------------~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 40 MKMEMEVEAPVSGIIK------------------EILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEEBSSSEEEE------------------EESSTTTEEEETTSEEEEE
T ss_pred CccceEEECCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 3466778888887543 3578899999999999976
No 87
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=56.90 E-value=27 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEecCCCCeeeCCCEEEEEeech
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++++++|+.|++|++|+++.-+.
T Consensus 39 ~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 39 KISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEcCCCCEEcCCCEEEEECCHH
Confidence 35789999999999999998764
No 88
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.80 E-value=9.4 Score=34.44 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=23.3
Q ss_pred CCCcEEEEecCCCCeeeCCCEEEEEeech
Q 031175 82 DPSLKVEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 82 ~~~l~v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
..++=-++++++|+.|++|++++++.-..
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 33455568999999999999999997653
No 89
>PRK07051 hypothetical protein; Validated
Probab=56.79 E-value=12 Score=25.83 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.6
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+++++|+.|++|+++++++..
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEc
Confidence 3678999999999999999875
No 90
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=56.75 E-value=14 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.7
Q ss_pred cEEEEecCCCCeeeCCCEEEEEe
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
.=.++++++|+.|..||++++|+
T Consensus 117 ~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 117 VVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred EEEEEEecCCCccCCCCEEEEec
Confidence 44556889999999999999985
No 91
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=55.47 E-value=10 Score=32.59 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=28.4
Q ss_pred CcEEEEecCCCCeeeCCCEEEE------------EeechhhhHHHHH
Q 031175 84 SLKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAER 118 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~------------i~G~a~~ll~~ER 118 (164)
+++.+..+++||.|++|+++++ ++|...+|-++||
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFEDKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEeeCCCCCcEEecCCCeEEEEEecCCC
Confidence 3778889999999999999886 4666777777776
No 92
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=53.79 E-value=12 Score=35.71 Aligned_cols=22 Identities=27% Similarity=0.219 Sum_probs=17.8
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++|++++||.|++|++|++++
T Consensus 221 v~~w~v~~Gd~V~~g~~l~~ve 242 (633)
T PRK11854 221 VTEVMVKVGDKVEAEQSLITVE 242 (633)
T ss_pred EEEEEecCCCeecCCCceEEEE
Confidence 3778999999988888888764
No 93
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=53.44 E-value=12 Score=29.45 Aligned_cols=21 Identities=29% Similarity=0.253 Sum_probs=18.4
Q ss_pred EEecCCCCeeeCCCEEEEEee
Q 031175 88 EWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G 108 (164)
.|+++.|+.|++|++|+.++-
T Consensus 100 ~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 100 KPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CccccCCCEeCCCCEEEEEEe
Confidence 368999999999999998874
No 94
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=52.75 E-value=56 Score=28.57 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=45.1
Q ss_pred CCcEEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 52 LDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 52 ~~~~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+..+++..++|..+|++.==.+...-++.++ .+.+ .-++++..|++|+.|+.++=-
T Consensus 75 ~~~~Grvnl~A~~~Gll~vd~~~l~~~N~~~-~i~~-at~~~~~~v~~g~~vA~~rii 130 (312)
T cd03522 75 EPAEGRVNLFAERAGLLKVDVEALDALNAID-AITL-ATLHNNTPVEAGQMVATVKII 130 (312)
T ss_pred CCccceEEEEECCCeeEEEcHHHHHhhhCCC-CEEE-EEcCCCeEeCCCCEEEEEEEe
Confidence 4567999999999999987666777777776 4554 579999999999999887643
No 95
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=52.51 E-value=13 Score=34.85 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.2
Q ss_pred cEEEEecCCCCeeeCCCEEEEEe
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
.-++|+++.||.|++|+.|++++
T Consensus 131 ~i~~w~v~~Gd~V~~g~~l~~ve 153 (546)
T TIGR01348 131 TVIEVLVKVGDTVSADQSLITLE 153 (546)
T ss_pred EEeEEeeCCCCcccCCCeeEEEE
Confidence 34778888888888888887765
No 96
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=51.72 E-value=16 Score=34.66 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=14.2
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++|+++.||.|++|+.|++++
T Consensus 152 i~~w~v~~Gd~V~~g~~l~~vE 173 (590)
T TIGR02927 152 ITQWLKAVGDKIEVDEPILEVS 173 (590)
T ss_pred EEEEEeCCCCEecCCCEeEEEE
Confidence 3567777777776666665554
No 97
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=51.53 E-value=15 Score=34.73 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=16.9
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++|++++|+.|++|+++++++
T Consensus 129 I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 129 IARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred EEEEEecCCCEecCCCeeEEEe
Confidence 3678888888888888777765
No 98
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=50.88 E-value=72 Score=28.16 Aligned_cols=23 Identities=13% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
..+++++|+.|++|++|+++.-.
T Consensus 77 ~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 77 LKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEcCCCCEecCCCEEEEECCH
Confidence 34689999999999999999743
No 99
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=50.54 E-value=69 Score=27.99 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.2
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++++++|+.|++|++|+++.-.
T Consensus 76 ~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 76 ARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEECCCCCEEcCCCEEEEECCH
Confidence 4689999999999999999544
No 100
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=50.41 E-value=22 Score=23.71 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.8
Q ss_pred EEecCCCCeeeCCCEEEEE
Q 031175 88 EWSLKDGDHVHKGLQFGKV 106 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i 106 (164)
++++.+|+.+++|++|+++
T Consensus 52 ~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 52 KVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EEEeCCCCEECCCCEEEEE
Confidence 4578999999999999986
No 101
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=50.37 E-value=17 Score=32.25 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEecCCCCeeeCCCEEEEEeechh
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGRAH 111 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~a~ 111 (164)
+.++++|+.|++|++|+++.-+..
T Consensus 71 ~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 71 DLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred EEECCCcCEECCCCEEEEECcHHH
Confidence 458999999999999999987644
No 102
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=49.95 E-value=14 Score=27.03 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.8
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
...+..++.||.|+.|+.|++..|.
T Consensus 40 ~~~~p~V~~Gd~V~~GQ~Ia~~~~~ 64 (101)
T PF13375_consen 40 APAEPVVKVGDKVKKGQLIAEAEGF 64 (101)
T ss_pred CcceEEEcCCCEEcCCCEEEecCCC
Confidence 4566789999999999999999874
No 103
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=49.73 E-value=15 Score=28.78 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.2
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.|+++.|+.|++|++|+.++-.
T Consensus 99 ~~~v~~Gd~V~~Gq~l~~iEam 120 (155)
T PRK06302 99 PPFVEVGDTVKEGQTLCIIEAM 120 (155)
T ss_pred CcccCCCCEeCCCCEEEEEEec
Confidence 4689999999999999998863
No 104
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=49.36 E-value=19 Score=34.35 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.5
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 84 SLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+.-++|+++.|+.|++|++|+.++-.
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEam 559 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAM 559 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 34578999999999999999999864
No 105
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=49.07 E-value=18 Score=34.22 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.7
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEee
Q 031175 84 SLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+.=++|++++|+.|++|++|+.++-
T Consensus 526 G~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 526 GSIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEe
Confidence 3457899999999999999999874
No 106
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=48.97 E-value=18 Score=33.77 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=17.9
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
--++|++++|+.|++|+.|++++.+
T Consensus 134 ~i~~w~v~~Gd~V~~g~~l~~vetd 158 (547)
T PRK11855 134 EVIEWLVKVGDTVEEDQSLITVETD 158 (547)
T ss_pred EEeEEEeCCCCeecCCCeeEEEEec
Confidence 3466788888888877777776554
No 107
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=48.24 E-value=17 Score=31.62 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.5
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++++++|+.|++|++|+++.-.
T Consensus 74 ~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 74 TLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEEcCCCCEEcCCCEEEEECcH
Confidence 4689999999999999999754
No 108
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=46.46 E-value=22 Score=32.20 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=14.0
Q ss_pred EecCCCCeeeCCCEEEEEe
Q 031175 89 WSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~ 107 (164)
+++++|+.+..|++|+++.
T Consensus 55 i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 55 INFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 5667777777888877774
No 109
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=46.42 E-value=19 Score=32.18 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEecCCCCeeeCCCEEEEEeech
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
.++++++|+.|++|++|+++.-+.
T Consensus 99 ~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 99 MALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred EEEECCCCCEecCCCEEEEECcHH
Confidence 346899999999999999997653
No 110
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=45.53 E-value=56 Score=26.61 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEee
Q 031175 84 SLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+.-.++++++|+.|++|++++++.-
T Consensus 75 G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 75 GIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cEEEEEEccCCCeecCCCEEEEECC
Confidence 3566789999999999999999997
No 111
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=44.76 E-value=21 Score=31.32 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+++.+|+.|++|++|+++.-+
T Consensus 74 ~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 74 KRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEcCCcCEecCCCEEEEECcH
Confidence 4579999999999999999854
No 112
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=43.93 E-value=37 Score=25.00 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.3
Q ss_pred eeeCCCEEEEEeechh
Q 031175 96 HVHKGLQFGKVSGRAH 111 (164)
Q Consensus 96 ~v~~G~~il~i~G~a~ 111 (164)
+|++|++|+++.|...
T Consensus 75 ~v~~G~iifEi~~~~~ 90 (112)
T cd01433 75 RVKPGQILFEVRGVPE 90 (112)
T ss_pred EECCCCEEEEEeCcCc
Confidence 5789999999999975
No 113
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=43.66 E-value=27 Score=31.16 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=8.2
Q ss_pred cCCCCeeeCCCEEEEEe
Q 031175 91 LKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 91 ~~dG~~v~~G~~il~i~ 107 (164)
+++|+.+..|++|+.+.
T Consensus 61 v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 61 VEEGDVVPVGSVIAVIE 77 (411)
T ss_pred cCCCCEeCCCCEEEEEe
Confidence 34444455555554443
No 114
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=43.15 E-value=46 Score=29.75 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.2
Q ss_pred Ee-cCCCCeeeCCCEEEEEeech
Q 031175 89 WS-LKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 89 ~~-~~dG~~v~~G~~il~i~G~a 110 (164)
++ +..|+.|++|++|+++.-+.
T Consensus 137 l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 137 VYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EEecCCCCEECCCCEEEEEeCHH
Confidence 45 89999999999999998763
No 115
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=42.86 E-value=40 Score=20.56 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=18.7
Q ss_pred EEEecCCCCeeeCCCEEEEEee
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G 108 (164)
..|++.+|+.+..|++++.++-
T Consensus 18 ~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 18 VEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred EEEEECCCCEEcCCCEEEEEEe
Confidence 4678999999999999988754
No 116
>PRK06748 hypothetical protein; Validated
Probab=42.79 E-value=32 Score=24.48 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=25.8
Q ss_pred EEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEe
Q 031175 56 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 56 ~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
+...+.|..+|++. ++++++|+.+..|++|+.++
T Consensus 41 ~~~ei~Ap~~G~v~------------------~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 41 QKVEIKVGISGYIE------------------SLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred ceEEEecCCCEEEE------------------EEEeCCCCEECCCCEEEEEE
Confidence 44466666666653 34689999999999999985
No 117
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=42.58 E-value=24 Score=24.84 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=24.1
Q ss_pred eechhhhHHHHHHHHHHHHHHhH-----HHHHHHHHHH
Q 031175 107 SGRAHSIVIAERVVLNFMQRMSG-----IATLTRAMAD 139 (164)
Q Consensus 107 ~G~a~~ll~~ER~~LN~L~~~SG-----IAT~T~~~V~ 139 (164)
+..+..|-.+|++++++|..++. +...+-+.++
T Consensus 47 ~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 47 QSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44567899999999999999887 4444444443
No 118
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=42.18 E-value=27 Score=33.32 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=12.1
Q ss_pred EecCCCCeeeCCCEEEEEeec
Q 031175 89 WSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 89 ~~~~dG~~v~~G~~il~i~G~ 109 (164)
+++++|+.|+.|++|++++.+
T Consensus 57 i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 57 IKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred EEeCCCCEEeCCCEEEEEecc
Confidence 455556666666666666543
No 119
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=41.06 E-value=31 Score=32.20 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
-++|++++|+.|++|++|++++..
T Consensus 18 i~~~~v~~Gd~V~~g~~l~~iEt~ 41 (547)
T PRK11855 18 VIEWLVKEGDTVEEDQPLVTVETD 41 (547)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEec
Confidence 457899999999999999988655
No 120
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=40.72 E-value=29 Score=32.98 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.3
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 84 SLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+.-++|++++|+.|++|++|+.++..
T Consensus 533 G~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 533 GNIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred EEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 34578999999999999999998754
No 121
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=39.96 E-value=28 Score=31.67 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=12.3
Q ss_pred EecCCCCe-eeCCCEEEEEe
Q 031175 89 WSLKDGDH-VHKGLQFGKVS 107 (164)
Q Consensus 89 ~~~~dG~~-v~~G~~il~i~ 107 (164)
+++++|+. +..|++++.+.
T Consensus 56 i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 56 ILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred EEECCCCEEecCCCEEEEEe
Confidence 45666666 67777776664
No 122
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=39.59 E-value=5.7 Score=36.12 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred cEEEEecCCCCeeeCCCEEEE------------EeechhhhHHHHHH
Q 031175 85 LKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAERV 119 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~------------i~G~a~~ll~~ER~ 119 (164)
+.....+++||.|++|+++++ ++|...+|+++||-
T Consensus 39 mrp~mkV~~gD~VkkGq~LfEdKknpgv~~Tap~sG~V~aI~RG~KR 85 (447)
T COG1726 39 MRPSMKVREGDAVKKGQVLFEDKKNPGVVFTAPVSGKVTAIHRGEKR 85 (447)
T ss_pred CCCcceeccCCeeeccceeeecccCCCeEEeccCCceEEEeecccce
Confidence 444456678888888877765 34555555555543
No 123
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=39.05 E-value=34 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.6
Q ss_pred cEEEEecCCCCeeeCCCEEEEEe
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
.=.++++++|+.|..|+.+++++
T Consensus 133 ~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 133 VVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEEEcCCCCEeCCCCEEEEeC
Confidence 34568999999999999999874
No 124
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=37.65 E-value=37 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.7
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031175 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
.++++++|+.|..|+.+++++
T Consensus 136 ~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 136 VEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEeCCCCEECCCCEEEEEC
Confidence 467999999999999999874
No 125
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=37.36 E-value=33 Score=35.29 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.1
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
=++|++++|+.|++|++|+.++-.
T Consensus 1143 v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1143 FWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred EEEEEeCCCCEECCCCEEEEEEec
Confidence 357899999999999999998754
No 126
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=36.35 E-value=39 Score=31.98 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEecCCCCeeeCCCEEEEEeec
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
-++|+++.|+.++.|++|++++.+
T Consensus 19 i~~w~v~~Gd~V~~g~~l~~vEtd 42 (590)
T TIGR02927 19 ITQWLKAEGDTVELDEPLLEVSTD 42 (590)
T ss_pred EEEEEECCCCEEeCCCeEEEEEec
Confidence 357899999999999998888544
No 127
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=36.30 E-value=38 Score=31.25 Aligned_cols=23 Identities=26% Similarity=0.565 Sum_probs=16.6
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+|++++|+.+++|+++++++-+
T Consensus 20 ~~w~v~~Gd~V~~gd~l~~iETd 42 (464)
T PRK11892 20 AKWLKKEGDKVKSGDVIAEIETD 42 (464)
T ss_pred EEEEecCCCEecCCCeEEEEEec
Confidence 56777777777777777777543
No 128
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=36.09 E-value=39 Score=30.17 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.3
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.-.++.+.|.+.|++||++++|-=.
T Consensus 63 ~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 63 RVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEEEecCCCEecCCCeEEEECcH
Confidence 4466799999999999999999754
No 129
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=35.92 E-value=40 Score=31.63 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=15.0
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++|++++|+.|+.|++|++++..
T Consensus 17 ~~~~v~~Gd~V~~G~~l~~vet~ 39 (546)
T TIGR01348 17 IEVLVKPGDKVEAGQSLITLESD 39 (546)
T ss_pred EEEEeCCCCEEcCCCEEEEEEcc
Confidence 45667777777777776666543
No 130
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=33.19 E-value=48 Score=34.05 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 84 SLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+.-++|+++.|+.|++|++|++++-.
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEAM 1108 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 44578999999999999999999853
No 131
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=32.79 E-value=40 Score=32.12 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.1
Q ss_pred EEEEecCCCCeeeCCCEEEEEe
Q 031175 86 KVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 86 ~v~~~~~dG~~v~~G~~il~i~ 107 (164)
-++.++++||+|++||.++++.
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEec
Confidence 3667899999999999999874
No 132
>PRK01202 glycine cleavage system protein H; Provisional
Probab=32.75 E-value=97 Score=23.37 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=28.0
Q ss_pred eeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 66 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 66 gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+.-|+.... .+.+|.=..++ +.+.|+.|++|+++++|++.
T Consensus 23 ~~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~~~~IEs~ 63 (127)
T PRK01202 23 TATVGITDHA--QEQLGDIVFVE-LPEVGDEVKAGETFGVVESV 63 (127)
T ss_pred EEEEeeCHHH--HhhcCCeeEEE-cCCCCCEecCCCEEEEEEEc
Confidence 3666765444 44555323444 45679999999999999875
No 133
>PF00936 BMC: BMC domain; InterPro: IPR000249 This domain is found in a variety of polyhedral organelle shell proteins, including CsoS1A, CsoS1B and CsoS1C of Thiobacillus neapolitanus (Halothiobacillus neapolitanus) and their orthologs from other bacteria. Some autotrophic and non-autotrophic organisms form polyhedral organelles, carboxysomes/enterosomes []. The best studied is the carboxysome of Halothiobacillus neapolitanus, which is composed of at least 9 proteins: six shell proteins, CsoS1A, CsoS1B, CsoS1C, Cso2A, Cso2B and CsoS3 (carbonic anhydrase) [], one protein of unknown function and the large and small subunits of RuBisCo (CbbL and Cbbs). Carboxysomes appear to be approximately 120 nm in diameter, most often observed as regular hexagons, with a solid interior bounded by a unilamellar protein shell. The interior is filled with type I RuBisCo, which is composed of 8 large subunits and 8 small subunits; it accounts for 60% of the carboxysomal protein, which amounts to approximately 300 molecules of enzyme per carboxysome. Carboxysomes are required for autotrophic growth at low CO2 concentrations and are thought to function as part of a CO2-concentrating mechanism [, ]. Polyhedral organelles, enterosomes, from non-autotrophic organisms are involved in coenzyme B12-dependent 1,2-propanediol utilisation (e.g., in Salmonella enterica []) and ethanolamine utilisation (e.g., in Salmonella typhimurium []). Genes needed for enterosome formation are located in the 1,2-propanediol utilisation pdu [, ] or ethanolamine utilisation eut [, ] operons, respectively. Although enterosomes of non-autotrophic organisms are apparently related to carboxysomes structurally, a functional relationship is uncertain. A role in CO2 concentration, similar to that of the carboxysome, is unlikely since there is no known association between CO2 and coenzyme B12-dependent 1,2-propanediol or ethanolamine utilisation []. It seems probable that entrosomes help protect the cells from reactive aldehyde species in the degradation pathways of 1,2-propanediol and ethanolamine [].; PDB: 3F56_C 3FCH_A 3I87_A 3GFH_B 3I82_A 3MPV_A 3IO0_A 4AXJ_B 3N79_A 2G13_A ....
Probab=32.69 E-value=1.4e+02 Score=20.27 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=40.9
Q ss_pred eeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHH
Q 031175 66 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 126 (164)
Q Consensus 66 gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~ 126 (164)
++..|+.-+...++..+ +++.....-+ +|...+.++|+..++-.+-+.+.+.++.
T Consensus 10 ~~~~~i~aaD~alKaa~--V~l~~~~~~~----~g~~~~~i~G~vs~V~~Av~a~~~~~~~ 64 (75)
T PF00936_consen 10 GIAAAIVAADAALKAAN--VELVEIELIC----GGKVTVIITGDVSAVKAAVDAAEEAAGK 64 (75)
T ss_dssp SHHHHHHHHHHHHHHSS--EEEEEEEEES----TTEEEEEEEESHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCC--EEEEEEEecC----CCeEEEEEEECHHHHHHHHHHHHHHHhh
Confidence 45567888888888776 6654333332 7889999999999998888877776654
No 134
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=32.34 E-value=1.1e+02 Score=22.73 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=25.9
Q ss_pred eeEEcH-HHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 66 GIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 66 gVvaG~-~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+.-|+ +++...|... ..++ +-+.|+.|++|+++++++..
T Consensus 16 ~~~vGiT~~aq~~lG~i---~~v~-lp~~G~~V~~g~~i~~IEs~ 56 (110)
T TIGR03077 16 VVRLGLTSRMQENLGNI---LHID-LPSVGSSCKEGEVLVILESS 56 (110)
T ss_pred EEEEeeCHHHHHhcCCE---EEEE-CCCCCCEEcCCCEEEEEEec
Confidence 345564 4444444322 3443 45679999999999999864
No 135
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=31.30 E-value=41 Score=32.27 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.7
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031175 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
++.++++||+|++||+++++.
T Consensus 562 F~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 562 FTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred ceEEecCCCEEcCCCEEEEEc
Confidence 667899999999999999874
No 136
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=30.93 E-value=68 Score=22.85 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=31.5
Q ss_pred cCCCCeeeCCCEEEEEeechhhhHHHHHHHHHHHHH
Q 031175 91 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 126 (164)
Q Consensus 91 ~~dG~~v~~G~~il~i~G~a~~ll~~ER~~LN~L~~ 126 (164)
..||+.+..|..++.+.|...+|-.+.+.+.+-++.
T Consensus 41 ~~~~~l~t~GGRvl~v~~~g~tl~eA~~~ay~~i~~ 76 (93)
T PF02843_consen 41 KEDGQLVTNGGRVLTVVALGDTLEEAREKAYEAIEK 76 (93)
T ss_dssp EETTEEEE-SSEEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred eeCCEEEecCCeEEEEEEEcCCHHHHHHHHHHHHhc
Confidence 459999999999999999999999999998887764
No 137
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=30.69 E-value=44 Score=32.31 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.4
Q ss_pred EEEecCCCCeeeCCCEEEEEe
Q 031175 87 VEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~ 107 (164)
++.++++||.|++||.|+++.
T Consensus 582 F~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 582 FKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred ceEEecCCCEEcCCCEEEEEc
Confidence 566799999999999999874
No 138
>PF13437 HlyD_3: HlyD family secretion protein
Probab=30.35 E-value=73 Score=22.10 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.4
Q ss_pred EEecCCCCeeeCCCEEEEEeec
Q 031175 88 EWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+.+..|+.+.+|+.|+++...
T Consensus 12 ~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 12 SINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EEeCCCCCEECCCCEEEEEEcc
Confidence 3456789999999999998865
No 139
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=30.31 E-value=55 Score=25.13 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=17.3
Q ss_pred EEecCCCCeeeCCCEEEEE
Q 031175 88 EWSLKDGDHVHKGLQFGKV 106 (164)
Q Consensus 88 ~~~~~dG~~v~~G~~il~i 106 (164)
+++++.|+.++.|+.|+++
T Consensus 111 ~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 111 AIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEEeCCCCEeCCCCEEEEe
Confidence 5789999999999999987
No 140
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=29.20 E-value=57 Score=22.51 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=15.1
Q ss_pred ecCCCCeeeCCCEEEEEeec
Q 031175 90 SLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 90 ~~~dG~~v~~G~~il~i~G~ 109 (164)
.++.|+.|++|+.|..+-..
T Consensus 56 ~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBSC
T ss_pred cceecccccCCCEEEecCCC
Confidence 47899999999999988743
No 141
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=29.06 E-value=65 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.5
Q ss_pred EEEecCCCCeeeCCCEEEEE
Q 031175 87 VEWSLKDGDHVHKGLQFGKV 106 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i 106 (164)
..+++++|+.|.+|+.|+++
T Consensus 133 ~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 133 KKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred EEEEcCCCCEECCCCEEEEe
Confidence 45679999999999999986
No 142
>PRK00624 glycine cleavage system protein H; Provisional
Probab=28.35 E-value=89 Score=23.42 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=26.0
Q ss_pred eeEEcHH-HHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 66 GIIAGIA-LAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 66 gVvaG~~-~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
.+..|+. ++...+... ..++ +-+.|+.|++|+.+++|+..
T Consensus 18 ~~~vGiT~~a~~~lG~i---~~v~-lp~~G~~V~~g~~i~~IEs~ 58 (114)
T PRK00624 18 IVRLGLTSKMQENLGNI---LHID-LPSVGSFCKEGEVLVILESS 58 (114)
T ss_pred EEEEeeCHHHHHhcCCE---EEEE-CCCCCCEEeCCCEEEEEEec
Confidence 3566754 444444322 3343 45779999999999999864
No 143
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.34 E-value=64 Score=30.70 Aligned_cols=23 Identities=26% Similarity=0.305 Sum_probs=20.2
Q ss_pred cEEEEecCCCCeeeCCCEEEEEe
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
.-+.+.+++|+.|++|+++++++
T Consensus 532 ~v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 532 TVVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred EEEEEEeCCCCEECCCCEEEEEe
Confidence 34678999999999999999986
No 144
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=28.08 E-value=49 Score=33.43 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCeeeCCCEEEEEe
Q 031175 83 PSLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 83 ~~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
|+.-+++.++.|+.|++||+++.++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehh
Confidence 4667889999999999999999876
No 145
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=27.23 E-value=74 Score=24.19 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.4
Q ss_pred eeeCCCEEEEEeec
Q 031175 96 HVHKGLQFGKVSGR 109 (164)
Q Consensus 96 ~v~~G~~il~i~G~ 109 (164)
+|++|++|+++.|.
T Consensus 95 rV~~G~ilfEi~~~ 108 (126)
T TIGR01164 95 VVKPGKILFEIAGV 108 (126)
T ss_pred EECCCCEEEEEeCC
Confidence 57899999999993
No 146
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=25.60 E-value=82 Score=30.39 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCeeeCCCEEEEEee
Q 031175 83 PSLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 83 ~~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
|+.-+.+.+.+|+.|.+||+++.++.
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEe
Confidence 35667889999999999999988874
No 147
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=24.95 E-value=1.6e+02 Score=21.94 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=21.7
Q ss_pred eEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 67 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 67 VvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+.-|+.... .+.+|.=..++ +.+.|+.+++|+.++.+++.
T Consensus 18 ~~vGit~~a--~~~lG~i~~v~-lp~~g~~~~~g~~~~~ies~ 57 (122)
T PF01597_consen 18 VRVGITDFA--QDELGDIVYVE-LPKVGTKLKKGDPFASIESS 57 (122)
T ss_dssp EEEEE-HHH--HHHH-SEEEEE--B-TT-EE-TTSEEEEEEES
T ss_pred EEEEECchH--hhcCCceEEEE-EccCCCEEecCCcEEEEEEC
Confidence 444644333 33445223444 56789999999999999974
No 148
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=24.60 E-value=1.2e+02 Score=25.05 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=27.3
Q ss_pred EEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeech
Q 031175 57 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 57 ~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
...+.|..+|+|. ...+..|+.+.+|+.|+++..+.
T Consensus 134 ~~~i~AP~~G~V~------------------~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 134 YTEIRAPFDGTIG------------------RRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred cCEEECCCCcEEE------------------EEEcCCCceeCCCCcEEEEEcCC
Confidence 4567777788773 34567899999999999997654
No 149
>PRK13380 glycine cleavage system protein H; Provisional
Probab=23.74 E-value=3.5e+02 Score=20.94 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=25.8
Q ss_pred eEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeec
Q 031175 67 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 67 VvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
+.-|+.... .+.+|.=..++ +.+.|+.|++|+.++.++..
T Consensus 31 ~~vGitd~a--q~~lG~I~~v~-lp~~G~~V~~Gd~~~~IEs~ 70 (144)
T PRK13380 31 VTVGITDYA--QTMAGDVVFVR-LKELGKKVEKGKPVATLESG 70 (144)
T ss_pred EEEecCHHH--HHhcCCEEEEE-cCCCCCEeeCCCeEEEEEEc
Confidence 567765444 23344212333 34579999999999999854
No 150
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=23.68 E-value=1.2e+02 Score=31.63 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=40.0
Q ss_pred EeeCCeeEEcHHHHHHHHhHcCCC------------------------cEE----------------EEecCCCCeeeCC
Q 031175 61 LAKEDGIIAGIALAEMIFHEVDPS------------------------LKV----------------EWSLKDGDHVHKG 100 (164)
Q Consensus 61 ~ake~gVvaG~~~a~~i~~~l~~~------------------------l~v----------------~~~~~dG~~v~~G 100 (164)
.+|..=|+-|+|-++++|+.-.|+ +.+ ...+.||+.+..|
T Consensus 971 r~ktgDI~qGLPrveellEaR~~k~~~~l~~~~G~v~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~v~~g~~v~~g 1050 (1227)
T TIGR02388 971 RAKTGDIVQGLPRIEELLEARKPKEACILAKRPGVVQVKYGTDDESVSIKVIERDGTISEYPLLPGQNIMVSDGQQVTGG 1050 (1227)
T ss_pred ecccCccccCchhHHHHHhccCCccccceeccCceeeeeccCCCCceEEEEeccCCceeeeeccCCcceeeccCcEEecC
Confidence 556666999999999999877541 111 3456788888888
Q ss_pred CEEEEEeechhhhHHH
Q 031175 101 LQFGKVSGRAHSIVIA 116 (164)
Q Consensus 101 ~~il~i~G~a~~ll~~ 116 (164)
+.+..-.=+...+|..
T Consensus 1051 ~~l~dg~~~ph~iL~~ 1066 (1227)
T TIGR02388 1051 EPLTDGPINPHDILDV 1066 (1227)
T ss_pred ccccCCCCCHHHHHhh
Confidence 8887766666777764
No 151
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=23.58 E-value=62 Score=29.65 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=27.7
Q ss_pred EEEEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEee
Q 031175 55 EVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 55 ~~~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
+.+..+-+...|++- +++++||+.|.+|+.++.++=
T Consensus 113 K~tv~V~sP~sGvi~------------------e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 113 KTTVEVPSPASGVIT------------------ELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred ceeeeccCCCcceee------------------EEecCCCCcccCCceeEEecC
Confidence 456666666666653 348999999999999999975
No 152
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=23.03 E-value=1.1e+02 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.7
Q ss_pred eeeCCCEEEEEeech
Q 031175 96 HVHKGLQFGKVSGRA 110 (164)
Q Consensus 96 ~v~~G~~il~i~G~a 110 (164)
.|++|++|+|+.|+.
T Consensus 95 ~V~~G~iifEi~~~v 109 (133)
T PF00252_consen 95 RVKPGQIIFEIGGKV 109 (133)
T ss_dssp EESTTEEEEEEESGS
T ss_pred EECCCcEEEEECCcC
Confidence 478999999998844
No 153
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=22.75 E-value=99 Score=26.17 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=18.7
Q ss_pred EEEecCCCCeeeCCCEEEEEeec
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
++..++-|+.|++|++|.++.=+
T Consensus 234 ~~~~~~~G~~V~~G~~lg~i~dp 256 (288)
T cd06254 234 WYPFVKAGDTVQKGALLGYVTDY 256 (288)
T ss_pred EEEecCCCCEecCCCEEEEEECC
Confidence 44567789999999999999643
No 154
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=22.43 E-value=3.1e+02 Score=21.94 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.3
Q ss_pred CCeeeCCCEEEEEeech
Q 031175 94 GDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 94 G~~v~~G~~il~i~G~a 110 (164)
|+.|++|++|+++.-+-
T Consensus 1 G~~VkkG~~L~~ld~~~ 17 (265)
T TIGR00999 1 GDPVKKGQVLAVVDSPE 17 (265)
T ss_pred CCcccCCCEEEEEccHH
Confidence 89999999999999853
No 155
>PRK12999 pyruvate carboxylase; Reviewed
Probab=22.37 E-value=88 Score=32.16 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred cEEEEecCCCCeeeCCCEEEEEee
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSG 108 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G 108 (164)
.-+++++++|+.|++|++++.++-
T Consensus 1086 ~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1086 SVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred EEEEEEcCCCCEECCCCEEEEEEc
Confidence 346789999999999999999974
No 156
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=22.22 E-value=55 Score=30.12 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.5
Q ss_pred cEEEEecCCCCeeeCCCEEEEEeec
Q 031175 85 LKVEWSLKDGDHVHKGLQFGKVSGR 109 (164)
Q Consensus 85 l~v~~~~~dG~~v~~G~~il~i~G~ 109 (164)
...+..|+.||+|+.|+.|++..|.
T Consensus 39 ~~~k~~Vk~GD~V~~Gq~I~~~~~~ 63 (447)
T TIGR01936 39 MRPKMKVRPGDKVKAGQPLFEDKKN 63 (447)
T ss_pred CCCceEeCcCCEEcCCCEeEecCCC
Confidence 5556789999999999999987763
No 157
>PRK15325 type III secretion system needle complex protein PrgJ; Provisional
Probab=22.22 E-value=2.6e+02 Score=20.04 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.8
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 031175 108 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 141 (164)
Q Consensus 108 G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~a 141 (164)
++++.|+..-..+-|.=-++|=++|.||+-|.++
T Consensus 41 snP~~Ll~lQ~~~~~Ysl~vslvSTLtrK~vsAI 74 (80)
T PRK15325 41 TDPKELAISQEMISDYNLYVSMVSTLTRKGVGAV 74 (80)
T ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 5788999998889999999999999999999876
No 158
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
Probab=21.99 E-value=2.3e+02 Score=18.24 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=29.9
Q ss_pred HHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeechhhhHHHH
Q 031175 71 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 117 (164)
Q Consensus 71 ~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a~~ll~~E 117 (164)
-..+..+-+..+ +.+... +.....+.+.+++++|++.++..|=
T Consensus 19 G~~i~~i~~~tg--a~I~i~--~~~~~~~~~r~v~I~G~~~~v~~A~ 61 (65)
T cd02396 19 GSTIKEIREETG--AKIRVS--KSVLPGSTERVVTISGKPSAVQKAL 61 (65)
T ss_pred cHHHHHHHHHHC--CEEEEc--CCCCCCCCceEEEEEeCHHHHHHHH
Confidence 367777777776 666543 2222456789999999999887763
No 159
>CHL00044 rpl16 ribosomal protein L16
Probab=21.84 E-value=1.5e+02 Score=22.90 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.8
Q ss_pred eeeCCCEEEEEeechh
Q 031175 96 HVHKGLQFGKVSGRAH 111 (164)
Q Consensus 96 ~v~~G~~il~i~G~a~ 111 (164)
.|++|++|+|+.|...
T Consensus 96 ~V~~G~ilfEi~g~~~ 111 (135)
T CHL00044 96 VVKPGRILYEMGGVSE 111 (135)
T ss_pred EECCCcEEEEEeCCCH
Confidence 4789999999999765
No 160
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=21.35 E-value=1.9e+02 Score=25.78 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=29.0
Q ss_pred EEEEEeeCCeeEEcHHHHHHHHhHcCCCcEEEEecCCCCeeeCCCEEEEEeech
Q 031175 57 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 57 ~a~i~ake~gVvaG~~~a~~i~~~l~~~l~v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
...|.|+-+|+|. +..+..|+.|.+|+.|++|...-
T Consensus 209 ~~~I~AP~dGvV~------------------~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 209 RFTLKAPIDGVIT------------------AFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred cEEEECCCCeEEE------------------EEECCCCCEECCCCeEEEEEcCC
Confidence 4478888888776 45788999999999999987653
No 161
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=20.90 E-value=1.1e+02 Score=26.00 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEecCCCCeeeCCCEEEEEeechhh
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGRAHS 112 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~a~~ 112 (164)
++..++-|+.|++||+|.+|.-+...
T Consensus 242 ~~~~~~~G~~V~~Gq~lg~I~dp~g~ 267 (293)
T cd06255 242 FEPSVPAGDTIPAGQPLGRVVDLYGA 267 (293)
T ss_pred EEEecCCCCEecCCCEEEEEECCCCC
Confidence 44568889999999999999866543
No 162
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=20.79 E-value=1.2e+02 Score=25.79 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.1
Q ss_pred EEEecCCCCeeeCCCEEEEEeech
Q 031175 87 VEWSLKDGDHVHKGLQFGKVSGRA 110 (164)
Q Consensus 87 v~~~~~dG~~v~~G~~il~i~G~a 110 (164)
++..++-|+.|++||+|.++.-+.
T Consensus 230 ~~~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 230 LRSLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred EEEecCCCCEECCCCEEEEEECCC
Confidence 556788899999999999997653
No 163
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=20.44 E-value=1.2e+02 Score=24.08 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.4
Q ss_pred CcEEEEecCCCCeeeCCCEEEEEe
Q 031175 84 SLKVEWSLKDGDHVHKGLQFGKVS 107 (164)
Q Consensus 84 ~l~v~~~~~dG~~v~~G~~il~i~ 107 (164)
+.++...+..|++|.+|+.++.+.
T Consensus 89 G~~v~~i~~~G~rV~~gd~lA~v~ 112 (150)
T PF09891_consen 89 GYQVYPIVDEGDRVRKGDRLAYVT 112 (150)
T ss_dssp SSEEEESS-TSEEE-TT-EEEEEE
T ss_pred ceEEEEEcccCcEeccCcEEEEEE
Confidence 378889999999999999998875
Done!