RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 031175
(164 letters)
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase
(carboxylating).
Length = 308
Score = 273 bits (700), Expect = 1e-93
Identities = 119/155 (76%), Positives = 135/155 (87%)
Query: 10 GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA 69
+ AI PSHPTYD++ V+KLALAEDAGDRGDVTC+ATIP DME EA FLAK DG++A
Sbjct: 3 AEMAMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLA 62
Query: 70 GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 129
GIALA+M+F EVDPSLKVEW+ DGD VHKGL+FGKV+G AHSI++AERVVLNFMQRMSG
Sbjct: 63 GIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSG 122
Query: 130 IATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 164
IATLT+AMAD A PA ILETRKTAP LRL+DKWAV
Sbjct: 123 IATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 268
Score = 184 bits (471), Expect = 2e-59
Identities = 73/137 (53%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Query: 30 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 89
V+LALAED G RGD+T A IP D EA +AKE+G++AG+ +AE +F +DP ++VEW
Sbjct: 4 VRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEW 62
Query: 90 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATIL 147
+KDGD V G V G A S++ AER LNF+QR+SGIATLTR + A IL
Sbjct: 63 LVKDGDRVEPGQVLATVEGPARSLLTAERTALNFLQRLSGIATLTRRYVEALAGTKARIL 122
Query: 148 ETRKTAPTLRLLDKWAV 164
+TRKT P LRLL+K+AV
Sbjct: 123 DTRKTTPGLRLLEKYAV 139
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 269
Score = 164 bits (418), Expect = 2e-51
Identities = 67/137 (48%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 30 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 89
+ ALAED G GD+T A IP D A +AKE+G++AG+ +AE +F +D ++VEW
Sbjct: 4 LDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEW 61
Query: 90 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATIL 147
+KDGD V G +V G A S++ AERV LN +QR+SGIAT TR + A A I
Sbjct: 62 LVKDGDRVEAGQVLLEVEGPARSLLTAERVALNLLQRLSGIATATRRYVEAARGTKARIA 121
Query: 148 ETRKTAPTLRLLDKWAV 164
+TRKT P LRLL+K+AV
Sbjct: 122 DTRKTTPGLRLLEKYAV 138
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 154 bits (392), Expect = 2e-47
Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 3/145 (2%)
Query: 22 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 81
P + +V AL ED G RGD+T A IP D + EA +AKE G++AG+ +AE +F +
Sbjct: 2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELL 60
Query: 82 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 141
PS++++W +KDGD V G ++ G A +++ AER LNF+Q +SGIAT T M +
Sbjct: 61 GPSIEIQWLVKDGDRVKPGDVLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEAL 120
Query: 142 --HPATILETRKTAPTLRLLDKWAV 164
I +TRKT P LRLL+K+AV
Sbjct: 121 RGTNVRIADTRKTTPGLRLLEKYAV 145
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 265
Score = 135 bits (342), Expect = 4e-40
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 5/137 (3%)
Query: 30 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 89
+ L ED G GD+T A +P A +AKEDG++AG+ +A +F ++ ++VEW
Sbjct: 2 LDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEW 58
Query: 90 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATIL 147
+KDGD V G +V G A S++ AER LNF+ R+SGIAT TR + A I
Sbjct: 59 LVKDGDRVEPGEVVAEVEGPARSLLTAERTALNFLGRLSGIATATRKYVEAARGTNVRIA 118
Query: 148 ETRKTAPTLRLLDKWAV 164
+TRKT P LRLL+K+AV
Sbjct: 119 DTRKTTPGLRLLEKYAV 135
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 135 bits (341), Expect = 9e-40
Identities = 61/141 (43%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 26 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 85
LK + ED G+ GDVT P ++ E FLAK+ G+ AG + E + +D +
Sbjct: 6 LKQALNRFFLEDIGE-GDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERI 64
Query: 86 KVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR-AMADLAHPA 144
+VE KDGD V KG V G S++ ERV+LN +QRMSGIAT+TR A+ L
Sbjct: 65 EVELHKKDGDLVKKGEIIATVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDDSH 124
Query: 145 T-ILETRKTAPTLRLLDKWAV 164
I +TRKT P LR+ DK+AV
Sbjct: 125 IRICDTRKTTPGLRMFDKYAV 145
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 121 bits (305), Expect = 2e-34
Identities = 63/149 (42%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 18 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 77
L SH +V+ ALAEDA GD+T IP AH A+E G+ +GI +
Sbjct: 2 LTSHIIDR---IVEAALAEDA-PWGDITSETLIPASATASAHLTAREPGVFSGIDVFAAA 57
Query: 78 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAM 137
F VDP++ V ++ DG+ G V+G A S++ AER+ LNF QRMSGIATLT A
Sbjct: 58 FRLVDPAITVTLAVADGERFEAGDILATVTGPARSVLTAERIALNFTQRMSGIATLTAAF 117
Query: 138 ADLAH--PATILETRKTAPTLRLLDKWAV 164
D + A I++TRKT P LR+ +++AV
Sbjct: 118 VDAVNGTRARIVDTRKTTPGLRIFERYAV 146
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 114 bits (287), Expect = 1e-31
Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 2/149 (1%)
Query: 18 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 77
LP P L+ +V+ AL ED G GD+T A +P D +A++ G+IAG+ LA +
Sbjct: 3 LPPLPRLMLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLA 62
Query: 78 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAM 137
F VDP +++ L DG V G +SG A ++ AER LNF+ +SGIAT T ++
Sbjct: 63 FRLVDPEIEMRRHLPDGAAVAPGDVIATISGPARGLLTAERTALNFLCHLSGIATATASI 122
Query: 138 ADL--AHPATILETRKTAPTLRLLDKWAV 164
A ++ TRKT P LR L+K+AV
Sbjct: 123 VAAIAGTKAKVVCTRKTTPGLRALEKYAV 151
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 114 bits (286), Expect = 1e-31
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 34 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 93
+ EDA GDVT A IP D+ A +AK+DG+IAG+ A+ +F +KVE +D
Sbjct: 10 VEEDA-PFGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHF--GVKVEVRKRD 66
Query: 94 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP----ATILET 149
G+ V G ++ G A +I++ ER LN + RMSGIAT TR + +L + T
Sbjct: 67 GEEVKAGEVILELKGNARAILLVERTALNIIGRMSGIATETRKLVELVKAVNPKVRVAGT 126
Query: 150 RKTAPTLRLLDKWAV 164
RKT P LRLLDK A+
Sbjct: 127 RKTLPGLRLLDKKAI 141
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
N-terminal domain has an alpha/beta hammerhead fold.
Length = 88
Score = 106 bits (267), Expect = 7e-31
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 39 GDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 98
RGD+T A IP D +A +AKE+G++AG+ A +F + L+VEW +KDG+ V
Sbjct: 1 IGRGDLTTEALIPPDKRAKAVIIAKEEGVVAGLEEAAEVFELLG--LEVEWLVKDGERVE 58
Query: 99 KGLQFGKVSGRAHSIVIAERVVLNFMQRMS 128
G ++ G A +++ AERV LNF+QR+S
Sbjct: 59 AGDVILEIEGPARALLTAERVALNFLQRLS 88
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 110 bits (276), Expect = 3e-30
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 30 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 89
V+ ALAED G GD+T IP + +A + +E +IAG A + +F ++DP + V W
Sbjct: 13 VRRALAEDIGS-GDITAQ-LIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHW 70
Query: 90 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATIL 147
+ DG+ V + G A S++ ER LNF+Q +SG+AT R ADL +L
Sbjct: 71 QVADGERVSANQVLFHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVAGTQVKLL 130
Query: 148 ETRKTAPTLRLLDKWAV 164
+TRKT P LRL K+AV
Sbjct: 131 DTRKTLPGLRLAQKYAV 147
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 289
Score = 106 bits (266), Expect = 1e-28
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--D 82
+ + V++ AL ED DVT +AT+P D A +++E G++AG+ +A ++ EV
Sbjct: 14 EARAVIRRALDEDLRYGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGT 73
Query: 83 PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH 142
+V ++DG V G V+ ++ AER +LN + +SGIAT T A D
Sbjct: 74 DGYEVLDRVEDGARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAVA 133
Query: 143 --PATILETRKTAPTLRLLDKWAV 164
A I +TRKT P LR L K+AV
Sbjct: 134 GTKAKIRDTRKTLPGLRALQKYAV 157
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 288
Score = 103 bits (258), Expect = 2e-27
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 34 LAEDAGDRGDVTCMATIPLDMEV-EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 92
L ED G RGD T + D +A ++AKE G+IAG+ +A +F +DP + +
Sbjct: 21 LREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPLVA 79
Query: 93 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR----AMADLAHPATILE 148
+G G ++ G ++++ ERV LN R+SGIATLTR +ADL P +++
Sbjct: 80 EGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKIADL--PTQLVD 137
Query: 149 TRKTAPTLRLLDKWAV 164
TRKT P LRLL+K+A
Sbjct: 138 TRKTTPGLRLLEKYAT 153
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 97.4 bits (243), Expect = 3e-25
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 25 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGI----ALAEMIFHE 80
++K ++ AL ED G RGD+ D + A +AK +G+ +G L EM
Sbjct: 2 EIKDFLEAALKEDLG-RGDLFERLLEK-DFKATAKIIAKSEGVFSGEKYALELLEMT--- 56
Query: 81 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL 140
++ +++KDG+ KG ++ G ++ ER +LN +Q SGIATLT +
Sbjct: 57 ---GIECVFTIKDGERFKKGDILMEIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEA 113
Query: 141 A--HPATILETRKTAPTLRLLDKWAV 164
H +L+TRKT P LR+ +K++V
Sbjct: 114 LESHKVKLLDTRKTRPLLRIFEKYSV 139
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 93.8 bits (234), Expect = 6e-24
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 43 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGD 95
D+ + I P D A F A+ED G++AG+ A + + P V ++ +G
Sbjct: 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGT 60
Query: 96 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRK 151
V G + G A +++ ERV+LN +QR+SGIAT T + A TRK
Sbjct: 61 VVEPGEPLLTIEGPARELLLLERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRK 120
Query: 152 TAPTLRLLDKWAV 164
T P LRLL+K+AV
Sbjct: 121 TTPGLRLLEKYAV 133
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 92.1 bits (229), Expect = 4e-23
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 30 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 89
V A+AED G GD T +P A + +E+ ++ G+ + + VDPS++V W
Sbjct: 29 VADAIAEDVGS-GDQTGR-LVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTW 86
Query: 90 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL--AHPATIL 147
++GD + ++ G A +++ AER LNF+Q +SG+A+ TR D A IL
Sbjct: 87 RYREGDRMTADSTVCELEGPARALLTAERNALNFLQLLSGVASATRRYVDRIAGTRARIL 146
Query: 148 ETRKTAPTLRLLDKWAV 164
+TRKT P LRL K+AV
Sbjct: 147 DTRKTLPGLRLAQKYAV 163
>gnl|CDD|235831 PRK06559, PRK06559, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 290
Score = 85.4 bits (211), Expect = 1e-20
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 24 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDP 83
+ + +K AL ED D + A + + AKE G++AG+ + + +F D
Sbjct: 11 FQIDDTLKAALREDVHSE-DYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDA 69
Query: 84 SLKVE--WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 141
+ + KDGD + G ++ G S++ ERV LNF+Q +SGIA++T A +
Sbjct: 70 EVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEAL 129
Query: 142 HPATI--LETRKTAPTLRLLDKWAV 164
I +TRKT P LRL +K+AV
Sbjct: 130 GDDRIKVFDTRKTTPNLRLFEKYAV 154
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 83.6 bits (207), Expect = 7e-20
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 25 DLKGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 81
D+ V AL ED G D T +P D A + +EDG+ G E +F ++
Sbjct: 22 DIPAAVAQALREDLGGTVDANNDITAQLLPADSRSHATIITREDGVFCGKRWVEEVFIQL 81
Query: 82 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-L 140
+ +EW + DGD + +++G A ++ ER LNF+Q +SG+AT R + L
Sbjct: 82 GDDVTIEWHVDDGDVITANQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELL 141
Query: 141 AHPAT-ILETRKTAPTLRLLDKWAV 164
A T +L+TRKT P LR K+AV
Sbjct: 142 AGTNTQLLDTRKTLPGLRSALKYAV 166
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.
Length = 284
Score = 55.5 bits (134), Expect = 9e-10
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 34 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 93
L ED GD+T A F ++ G ++GI++A + + L ++ ++ D
Sbjct: 13 LLEDI-QGGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSD 69
Query: 94 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILET 149
G + G + G A ++ + V N ++ G++ M L I T
Sbjct: 70 GSQANAGQRLISAQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDGNIACT 129
Query: 150 RKTAPTLRLLDKWAV 164
RK P RLL AV
Sbjct: 130 RKAIPGTRLLATQAV 144
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide.
Length = 272
Score = 51.9 bits (125), Expect = 1e-08
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 34 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 93
L EDA GD+T A + + F A++ G++ G A I + L+V+ +
Sbjct: 8 LLEDA-PYGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAAS 64
Query: 94 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA---HPAT-ILET 149
G V G + G A ++ + +V ++ SGIAT T M A +P + T
Sbjct: 65 GSRVAAGAVLLEAEGPAAALHLGWKVAQTLLEWASGIATATAEMVAAARAVNPDIVVATT 124
Query: 150 RKTAPTLRLL 159
RK P R L
Sbjct: 125 RKAFPGTRKL 134
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The
gene modD for a member of this family is found with
molybdenum transport genes modABC in Rhodobacter
capsulatus. However, disruption of modD causes only a
4-fold (rather than 500-fold for modA, modB, modC)
change in the external molybdenum concentration required
to suppress an alternative nitrogenase. ModD proteins
are highly similar to nicotinate-nucleotide
pyrophosphorylase (also called quinolinate
phosphoribosyltransferase). The function unknown
[Unknown function, General].
Length = 277
Score = 51.4 bits (123), Expect = 2e-08
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 34 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 93
L ED G GD+T A D F A+++GI++G++ A + ++ +++++
Sbjct: 12 LLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPS 68
Query: 94 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA---HPATILE-T 149
G G + G A + + + ++ G+AT T M LA P ++ T
Sbjct: 69 GSRALAGTLLLEAKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKISPMAVVACT 128
Query: 150 RKTAPTLRLLDKWAV 164
RK P R L AV
Sbjct: 129 RKAIPLTRPLAVKAV 143
>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase,
C-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
C-terminal domain has a 7 beta-stranded TIM barrel-like
fold.
Length = 169
Score = 47.3 bits (113), Expect = 3e-07
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 130 IATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 164
IAT TR M + A I +TRKT P LRLL+K+AV
Sbjct: 1 IATATRRMVEAARGTKVRIADTRKTTPGLRLLEKYAV 37
>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
Length = 390
Score = 28.6 bits (64), Expect = 1.4
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 16 IKLPSHPTY---DLKGVVKLALAEDAGDRGDVTCMATI---PLDMEVE------AHFLAK 63
++ PS+P D++GVVKLA A D T + + PLD+ + FLA
Sbjct: 144 VETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAG 203
Query: 64 EDGIIAGIA 72
++AG+A
Sbjct: 204 HSDVLAGLA 212
>gnl|CDD|151471 pfam11024, DGF-1_4, Dispersed gene family protein 1 of Trypanosoma
cruzi region 4. This protein is likely to be highly
expressed, and is expressed from the sub-telomeric
region. However, the function is not known. Other
domains on this protein include DGF-1_N, DGF-1_2, and
DGF-1_5. This domain is just downstream from the
C-terminus, but not the C-terminus of proteins, also
annotated as being DGF-1, that constitute family
DGF-1_C.
Length = 75
Score = 26.8 bits (59), Expect = 1.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 134 TRAMADLAHPATILETRKTAPT 155
T M L+H AT+ ETR PT
Sbjct: 7 TPGMPLLSHTATLTETRSLTPT 28
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 27.1 bits (60), Expect = 4.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 87 VEWSLKDGDHVHKGLQFGKVS 107
+ + K+GDHV KG + G S
Sbjct: 565 ITFVKKEGDHVKKGDELGYFS 585
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 26.9 bits (60), Expect = 5.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 61 LAKEDGIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 106
A EDG + G + LA+ I E+ LKVE+ D + L+ GK+
Sbjct: 15 FADEDGELTGFDVDLAKAIAKELG--LKVEFVEVSFDSLLTALKSGKI 60
>gnl|CDD|218197 pfam04661, Pox_I3, Poxvirus I3 ssDNA-binding protein.
Length = 263
Score = 27.0 bits (60), Expect = 5.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 51 PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 92
+ E+E LAK D +A L ++F+ KV ++LK
Sbjct: 164 SISRELEN--LAKRDPQMAKAILVPIVFYRNGNECKVTFALK 203
>gnl|CDD|232861 TIGR00181, pepF, oligoendopeptidase F. This family represents the
oligoendopeptidase F clade of the family of larger M3 or
thimet (for thiol-dependent metallopeptidase)
oligopeptidase family. Lactococcus lactis PepF
hydrolyzed peptides of 7 and 17 amino acids with fairly
broad specificity. The homolog of lactococcal PepF in
group B Streptococcus was named PepB (PMID:8757883),
with the name difference reflecting a difference in
species of origin rather activity; substrate profiles
were quite similar. Differences in substrate specificity
should be expected in other species. The gene is
duplicated in Lactococcus lactis on the plasmid that
bears it. A shortened second copy is found in Bacillus
subtilis [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 591
Score = 26.9 bits (60), Expect = 5.7
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 66 GIIAGIALAEMIFHEVDP 83
G +A AL E I E
Sbjct: 523 GQVAATALYEKIKEEGKG 540
>gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase.
Length = 153
Score = 26.1 bits (57), Expect = 6.3
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 19 PSHPTYDLKGVVKLALAED 37
P ++ +G++++ LAE+
Sbjct: 35 PFDLLHNPQGIIQMGLAEN 53
>gnl|CDD|235365 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR
uracil phosphoribosyltransferase; Provisional.
Length = 176
Score = 25.9 bits (58), Expect = 8.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 124 MQRMSGI--ATLTRAMADLAHPATILETRKTAPTLRLL 159
M + + L RA+ +AH I+E K L L+
Sbjct: 1 MMKKEILDAEALRRALTRIAHE--IIERNKGLDNLVLV 36
>gnl|CDD|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General
function prediction only].
Length = 978
Score = 26.6 bits (59), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 78 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 119
F E+ P L E ++DGD V +FG++ RA + +RV
Sbjct: 856 FVEISPELAAERGIEDGDLVRLTSEFGEIKLRAL---VTDRV 894
>gnl|CDD|226154 COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism
[Inorganic ion transport and metabolism].
Length = 291
Score = 26.3 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 122 NFMQRMSGIATLTRAMADLAHPATILETRKTAP 154
F QR++G+AT R ATI++TR P
Sbjct: 89 RFFQRVAGVATTERTDD-----ATIIQTRHRIP 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,623,714
Number of extensions: 806881
Number of successful extensions: 668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 42
Length of query: 164
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 74
Effective length of database: 6,945,742
Effective search space: 513984908
Effective search space used: 513984908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)