BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031176
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYG|A Chain A, Solution Structure Of Rsgi Ruh-001, A Fis1p-Like And Cgi-
135 Homologous Domain From A Mouse Cdna
Length = 133
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
+W LV S+ ED++RGI +LE L S +QR+ ++ LAVG YR EY K+ + +
Sbjct: 46 AWCLVRSKYNEDIRRGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 104
Query: 114 LEIAPDWRQALGLKKTVEDRIAK 136
L+ P QA L++ ++ + K
Sbjct: 105 LQTEPQNNQAKELERLIDKAMKK 127
>pdb|1PC2|A Chain A, Solution Structure Of Human Mitochondria Fission Protein
Fis1
Length = 152
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
+W LV S+ +D+++GI +LE L S +QR+ ++ LAVG YR EY K+ + +
Sbjct: 39 AWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97
Query: 114 LEIAPDWRQALGLKKTVEDRIAKD 137
L+ P QA L++ ++ + KD
Sbjct: 98 LQTEPQNNQAKELERLIDKAMKKD 121
>pdb|1NZN|A Chain A, Cytosolic Domain Of The Human Mitchondrial Fission Protein
Fis1 Adopts A Tpr Fold
Length = 126
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113
+W LV +R +D+++GI +LE L S +QR+ ++ LAVG YR EY K+ + +
Sbjct: 42 AWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALKYVRGL 100
Query: 114 LEIAPDWRQALGLKKTVEDRIAKD 137
L+ P QA L++ ++ KD
Sbjct: 101 LQTEPQNNQAKELERLIDKAXKKD 124
>pdb|1Y8M|A Chain A, Solution Structure Of Yeast Mitochondria Fission Protein
Fis1
Length = 144
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
+S +W L+ S D + G+ +L + ++RE LY L +G Y+ GEY+ ++
Sbjct: 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAK 97
Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
+ ++ E + +Q LK VED+I K+
Sbjct: 98 RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127
>pdb|3O48|A Chain A, Crystal Structure Of Fission Protein Fis1 From
Saccharomyces Cerevisiae
Length = 134
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
+S +W L+ S D + G+ +L + ++RE LY L +G Y+ GEY+ ++
Sbjct: 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAK 98
Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
+ ++ E + +Q LK VED+I K+
Sbjct: 99 RYVDTLFEHERNNKQVGALKSMVEDKIQKE 128
>pdb|2PQN|A Chain A, Crystal Structure Of Yeast Fis1 Complexed With A Fragment
Of Yeast Mdv1
pdb|2PQR|A Chain A, Crystal Structure Of Yeast Fis1 Complexed With A Fragment
Of Yeast Caf4
pdb|2PQR|B Chain B, Crystal Structure Of Yeast Fis1 Complexed With A Fragment
Of Yeast Caf4
pdb|3UUX|A Chain A, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
pdb|3UUX|C Chain C, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
Length = 129
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107
+S +W L+ S D + G+ +L + ++RE LY L +G Y+ GEY+ ++
Sbjct: 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAK 97
Query: 108 QILEQCLEIAPDWRQALGLKKTVEDRIAKD 137
+ ++ E + +Q LK VED+I K+
Sbjct: 98 RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 65 DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124
D++ + LE L + P+ + E YL+ Y + G++ K+ + +E+ PD AL
Sbjct: 15 DIENALQALEEFL--QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPAL 71
Query: 125 GLKKTVED 132
+K V D
Sbjct: 72 QARKMVMD 79
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 82 PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136
PPL + ++ +G + +Q+L + EIA + LGL+ +++D +K
Sbjct: 294 PPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSK 348
>pdb|3Q15|A Chain A, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|B Chain B, Crystal Structure Of Raph Complexed With Spo0f
Length = 378
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 33 CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL---QQREK 89
E+E+ +DD +K+E +++ A H +Q I L+A + PL + +
Sbjct: 127 AEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI--LQALDIYQNHPLYSIRTIQS 184
Query: 90 LYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119
L+++A Y Y K+ LE LE+A D
Sbjct: 185 LFVIAGNYDDFKHYDKALPHLEAALELAMD 214
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 83 PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119
P E Y L YY+ G+Y ++ + ++ LE+ P+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 41
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPD 119
Y L YY+ G+Y K+ + ++ LE+ P+
Sbjct: 47 YNLGNAYYKQGDYQKAIEYYQKALELDPN 75
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 83 PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119
P E Y L YY+ G+Y ++ + ++ LE+ P+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 41
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 83 PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119
P E Y L YY+ G+Y ++ + ++ LE+ P+
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,792,486
Number of Sequences: 62578
Number of extensions: 128303
Number of successful extensions: 355
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 23
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)