Query 031176
Match_columns 164
No_of_seqs 108 out of 240
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3364 Membrane protein invol 100.0 4.2E-44 9.2E-49 274.8 13.6 140 16-156 1-140 (149)
2 PF14853 Fis1_TPR_C: Fis1 C-te 99.9 2.3E-23 5E-28 136.7 6.9 53 87-139 1-53 (53)
3 PF14852 Fis1_TPR_N: Fis1 N-te 99.4 1E-12 2.2E-17 79.4 4.4 33 47-79 1-33 (35)
4 PF13432 TPR_16: Tetratricopep 98.9 1.7E-08 3.8E-13 66.1 8.1 65 51-121 1-65 (65)
5 PF13414 TPR_11: TPR repeat; P 98.8 7E-08 1.5E-12 63.7 8.2 67 46-118 2-69 (69)
6 TIGR02552 LcrH_SycD type III s 98.7 3.3E-07 7.2E-12 67.1 12.5 96 33-134 36-132 (135)
7 PF14559 TPR_19: Tetratricopep 98.7 3E-08 6.5E-13 65.2 6.3 66 62-130 3-68 (68)
8 PRK10370 formate-dependent nit 98.7 2.7E-07 5.9E-12 74.2 11.3 95 35-132 94-189 (198)
9 PRK15359 type III secretion sy 98.7 9.4E-07 2E-11 67.4 12.9 88 41-134 52-139 (144)
10 PLN03088 SGT1, suppressor of 98.6 4.9E-07 1.1E-11 78.7 12.2 100 31-136 19-119 (356)
11 PF13371 TPR_9: Tetratricopept 98.5 4.6E-07 9.9E-12 60.2 7.2 67 62-131 7-73 (73)
12 COG4235 Cytochrome c biogenesi 98.5 1.3E-06 2.8E-11 74.9 11.0 96 32-130 174-270 (287)
13 TIGR02795 tol_pal_ybgF tol-pal 98.5 3.5E-06 7.6E-11 59.4 11.3 79 46-127 38-116 (119)
14 PF07719 TPR_2: Tetratricopept 98.4 6.4E-07 1.4E-11 51.4 4.6 33 88-120 2-34 (34)
15 TIGR02552 LcrH_SycD type III s 98.4 5.5E-06 1.2E-10 60.6 10.4 88 41-134 11-98 (135)
16 PF00515 TPR_1: Tetratricopept 98.3 1.4E-06 3.1E-11 50.4 4.3 33 88-120 2-34 (34)
17 PF13429 TPR_15: Tetratricopep 98.2 9.3E-06 2E-10 67.1 9.5 90 33-128 165-255 (280)
18 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.8E-05 3.8E-10 55.8 8.9 73 47-122 2-74 (119)
19 cd00189 TPR Tetratricopeptide 98.2 4.9E-05 1.1E-09 48.6 10.1 65 48-118 35-99 (100)
20 PRK02603 photosystem I assembl 98.1 3.7E-05 8.1E-10 59.6 10.5 84 45-131 33-116 (172)
21 TIGR02521 type_IV_pilW type IV 98.1 9E-05 1.9E-09 56.4 12.0 91 33-127 84-175 (234)
22 PRK10866 outer membrane biogen 98.1 1.6E-05 3.4E-10 66.1 8.1 77 45-124 30-106 (243)
23 PRK15359 type III secretion sy 98.1 2.3E-05 5.1E-10 59.7 8.3 77 48-130 25-101 (144)
24 cd00189 TPR Tetratricopeptide 98.1 8.4E-05 1.8E-09 47.5 9.6 70 49-124 2-71 (100)
25 PRK10370 formate-dependent nit 98.0 0.00013 2.8E-09 58.6 12.1 105 23-133 48-156 (198)
26 PF13525 YfiO: Outer membrane 98.0 2.6E-05 5.7E-10 62.6 8.0 77 45-124 3-79 (203)
27 PF12895 Apc3: Anaphase-promot 98.0 3.7E-05 8E-10 52.8 7.3 60 46-112 24-83 (84)
28 PF06552 TOM20_plant: Plant sp 98.0 0.00012 2.7E-09 59.2 11.3 90 41-133 19-136 (186)
29 TIGR03302 OM_YfiO outer membra 98.0 5.9E-05 1.3E-09 60.3 9.5 78 43-123 29-106 (235)
30 PRK10803 tol-pal system protei 98.0 0.00016 3.4E-09 61.1 12.2 77 46-124 141-217 (263)
31 PRK15363 pathogenicity island 98.0 4.1E-05 8.8E-10 60.5 7.8 72 46-123 34-105 (157)
32 PRK12370 invasion protein regu 97.9 0.00012 2.6E-09 67.0 11.9 90 28-123 318-408 (553)
33 PRK09782 bacteriophage N4 rece 97.9 7.3E-05 1.6E-09 73.3 11.1 90 33-128 628-718 (987)
34 PRK12370 invasion protein regu 97.9 0.00014 2.9E-09 66.6 11.8 100 25-127 272-378 (553)
35 PF12895 Apc3: Anaphase-promot 97.9 1.8E-05 3.9E-10 54.5 4.5 64 63-129 2-66 (84)
36 TIGR00990 3a0801s09 mitochondr 97.9 0.00017 3.6E-09 66.4 11.7 76 43-124 361-436 (615)
37 PF13174 TPR_6: Tetratricopept 97.9 3E-05 6.6E-10 43.8 4.4 33 88-120 1-33 (33)
38 TIGR03302 OM_YfiO outer membra 97.9 0.00028 6E-09 56.4 11.6 78 47-127 70-155 (235)
39 PRK10803 tol-pal system protei 97.9 0.00012 2.6E-09 61.8 9.9 81 47-130 180-260 (263)
40 PRK11189 lipoprotein NlpI; Pro 97.9 0.00018 3.8E-09 60.8 10.9 70 46-121 97-166 (296)
41 TIGR02521 type_IV_pilW type IV 97.9 0.00044 9.4E-09 52.6 12.0 80 46-131 134-213 (234)
42 PF13428 TPR_14: Tetratricopep 97.8 6.1E-05 1.3E-09 46.4 5.6 40 88-127 2-41 (44)
43 PF13512 TPR_18: Tetratricopep 97.8 0.00013 2.8E-09 56.8 8.3 78 44-124 7-84 (142)
44 PF13181 TPR_8: Tetratricopept 97.8 3.7E-05 8.1E-10 44.1 3.9 33 88-120 2-34 (34)
45 PRK11189 lipoprotein NlpI; Pro 97.8 0.00046 1E-08 58.3 12.0 96 28-129 44-140 (296)
46 PRK10049 pgaA outer membrane p 97.8 0.00032 6.9E-09 66.6 11.7 95 32-132 377-472 (765)
47 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00094 2E-08 60.6 14.0 68 44-116 72-141 (453)
48 CHL00033 ycf3 photosystem I as 97.7 0.00051 1.1E-08 52.8 10.4 84 46-132 34-117 (168)
49 PF12688 TPR_5: Tetratrico pep 97.7 0.0005 1.1E-08 51.8 9.5 81 47-130 1-84 (120)
50 TIGR02917 PEP_TPR_lipo putativ 97.7 0.00069 1.5E-08 61.5 11.8 87 33-125 144-231 (899)
51 TIGR02917 PEP_TPR_lipo putativ 97.6 0.0006 1.3E-08 61.9 11.3 86 34-126 790-876 (899)
52 TIGR00990 3a0801s09 mitochondr 97.6 0.00066 1.4E-08 62.5 11.7 89 33-127 384-473 (615)
53 PF13424 TPR_12: Tetratricopep 97.6 0.0003 6.5E-09 47.2 6.5 68 46-116 4-75 (78)
54 PLN03088 SGT1, suppressor of 97.6 0.00062 1.3E-08 59.4 9.7 77 51-133 6-82 (356)
55 PRK10049 pgaA outer membrane p 97.5 0.0014 3.1E-08 62.2 11.7 87 34-127 69-156 (765)
56 PRK15174 Vi polysaccharide exp 97.5 0.0016 3.4E-08 61.1 11.6 94 31-127 229-324 (656)
57 PRK11788 tetratricopeptide rep 97.4 0.0021 4.5E-08 54.6 11.3 76 43-123 210-285 (389)
58 PRK15174 Vi polysaccharide exp 97.4 0.0033 7.2E-08 58.9 13.0 85 34-124 270-355 (656)
59 PRK02603 photosystem I assembl 97.4 0.0032 6.9E-08 48.7 10.9 68 47-120 72-153 (172)
60 PF13429 TPR_15: Tetratricopep 97.4 0.00067 1.4E-08 56.0 7.4 76 46-125 109-184 (280)
61 smart00028 TPR Tetratricopepti 97.4 0.00041 9E-09 36.5 4.1 33 88-120 2-34 (34)
62 PF13414 TPR_11: TPR repeat; P 97.4 0.0008 1.7E-08 44.0 6.3 49 87-135 3-51 (69)
63 PRK15363 pathogenicity island 97.4 0.0054 1.2E-07 48.5 12.0 118 11-134 12-150 (157)
64 PF13432 TPR_16: Tetratricopep 97.4 0.00053 1.2E-08 44.5 5.3 45 91-135 1-45 (65)
65 KOG0553 TPR repeat-containing 97.3 0.0033 7.2E-08 54.3 10.7 86 44-135 112-197 (304)
66 PF13525 YfiO: Outer membrane 97.3 0.0054 1.2E-07 49.1 11.2 96 33-131 28-134 (203)
67 PRK11788 tetratricopeptide rep 97.3 0.0065 1.4E-07 51.6 12.3 81 44-127 138-220 (389)
68 PRK15179 Vi polysaccharide bio 97.2 0.0025 5.5E-08 60.6 10.5 76 47-128 86-161 (694)
69 COG4105 ComL DNA uptake lipopr 97.2 0.0017 3.7E-08 54.9 8.2 75 46-123 33-107 (254)
70 PRK09782 bacteriophage N4 rece 97.2 0.0043 9.2E-08 61.2 12.1 73 46-124 608-680 (987)
71 COG3063 PilF Tfp pilus assembl 97.2 0.0022 4.7E-08 54.0 8.6 90 30-123 85-175 (250)
72 PF09976 TPR_21: Tetratricopep 97.2 0.0044 9.6E-08 46.7 9.7 80 46-129 47-126 (145)
73 PF13176 TPR_7: Tetratricopept 97.2 0.00061 1.3E-08 40.3 3.8 32 89-120 1-34 (36)
74 CHL00033 ycf3 photosystem I as 97.2 0.0064 1.4E-07 46.7 10.5 72 47-124 72-157 (168)
75 PRK15179 Vi polysaccharide bio 97.1 0.0031 6.7E-08 60.0 9.9 86 34-125 106-192 (694)
76 PRK10747 putative protoheme IX 97.0 0.0073 1.6E-07 53.1 10.4 67 64-133 308-374 (398)
77 KOG0543 FKBP-type peptidyl-pro 97.0 0.0074 1.6E-07 54.0 10.1 84 47-136 257-344 (397)
78 PRK11447 cellulose synthase su 96.9 0.0088 1.9E-07 59.3 11.4 66 52-123 274-339 (1157)
79 KOG1126 DNA-binding cell divis 96.9 0.0019 4.1E-08 60.6 5.6 77 47-126 450-528 (638)
80 PRK11906 transcriptional regul 96.8 0.026 5.7E-07 51.4 12.4 99 27-131 317-416 (458)
81 PF04733 Coatomer_E: Coatomer 96.8 0.012 2.7E-07 50.1 9.7 85 34-122 151-236 (290)
82 PRK10866 outer membrane biogen 96.8 0.044 9.4E-07 45.5 12.7 82 46-130 68-167 (243)
83 PLN02789 farnesyltranstransfer 96.8 0.017 3.8E-07 50.0 10.5 85 42-130 101-185 (320)
84 KOG2076 RNA polymerase III tra 96.7 0.0076 1.7E-07 58.3 8.6 78 43-125 410-487 (895)
85 PF04733 Coatomer_E: Coatomer 96.7 0.0099 2.2E-07 50.7 8.2 80 44-129 198-278 (290)
86 TIGR00540 hemY_coli hemY prote 96.6 0.029 6.2E-07 49.4 11.3 69 62-132 311-382 (409)
87 COG1729 Uncharacterized protei 96.6 0.041 9E-07 46.8 11.6 84 44-130 175-258 (262)
88 PRK11447 cellulose synthase su 96.6 0.013 2.8E-07 58.2 9.8 77 43-125 599-675 (1157)
89 KOG0548 Molecular co-chaperone 96.5 0.045 9.9E-07 50.6 11.9 85 46-136 357-441 (539)
90 PF12569 NARP1: NMDA receptor- 96.5 0.064 1.4E-06 49.5 12.7 123 5-132 96-239 (517)
91 COG4783 Putative Zn-dependent 96.4 0.064 1.4E-06 49.1 12.3 97 35-137 361-458 (484)
92 PF13374 TPR_10: Tetratricopep 96.4 0.0065 1.4E-07 35.5 4.1 29 88-116 3-31 (42)
93 TIGR03504 FimV_Cterm FimV C-te 96.4 0.011 2.4E-07 37.2 5.3 39 91-130 3-41 (44)
94 PF12688 TPR_5: Tetratrico pep 96.4 0.034 7.4E-07 41.8 8.7 80 33-115 20-103 (120)
95 KOG2002 TPR-containing nuclear 96.3 0.014 3.1E-07 57.1 7.9 75 46-124 679-753 (1018)
96 cd05804 StaR_like StaR_like; a 96.3 0.019 4E-07 48.3 7.7 66 48-119 115-180 (355)
97 TIGR00540 hemY_coli hemY prote 96.3 0.027 5.8E-07 49.6 8.8 84 25-115 310-398 (409)
98 KOG3060 Uncharacterized conser 96.2 0.047 1E-06 46.8 9.6 84 33-121 105-188 (289)
99 KOG4162 Predicted calmodulin-b 96.2 0.031 6.7E-07 53.6 9.3 77 41-121 712-788 (799)
100 PF09295 ChAPs: ChAPs (Chs5p-A 96.2 0.031 6.6E-07 50.1 8.9 63 45-113 232-294 (395)
101 KOG0543 FKBP-type peptidyl-pro 96.2 0.041 8.9E-07 49.3 9.6 38 87-124 257-294 (397)
102 PF07720 TPR_3: Tetratricopept 96.2 0.014 3E-07 35.1 4.6 33 88-120 2-36 (36)
103 PRK14720 transcript cleavage f 96.2 0.048 1E-06 53.5 10.7 41 85-125 114-154 (906)
104 PF13512 TPR_18: Tetratricopep 96.1 0.084 1.8E-06 41.1 9.9 80 43-125 43-137 (142)
105 PF13371 TPR_9: Tetratricopept 96.1 0.011 2.4E-07 38.8 4.4 44 93-136 1-44 (73)
106 KOG4626 O-linked N-acetylgluco 96.1 0.041 8.9E-07 52.4 9.5 71 47-123 354-424 (966)
107 PRK14574 hmsH outer membrane p 96.1 0.12 2.5E-06 50.4 12.8 108 15-128 403-525 (822)
108 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.038 8.2E-07 50.4 8.7 41 84-124 72-112 (453)
109 PF09976 TPR_21: Tetratricopep 96.0 0.028 6.1E-07 42.3 6.6 61 47-114 85-145 (145)
110 COG1729 Uncharacterized protei 95.9 0.06 1.3E-06 45.9 8.9 78 48-128 142-220 (262)
111 COG3063 PilF Tfp pilus assembl 95.8 0.051 1.1E-06 45.8 7.9 73 45-123 33-105 (250)
112 cd05804 StaR_like StaR_like; a 95.8 0.12 2.7E-06 43.3 10.3 79 44-125 3-81 (355)
113 PRK14574 hmsH outer membrane p 95.7 0.094 2E-06 51.0 10.6 62 62-126 114-175 (822)
114 KOG1125 TPR repeat-containing 95.7 0.05 1.1E-06 50.7 8.1 95 25-124 405-535 (579)
115 PRK15331 chaperone protein Sic 95.7 0.054 1.2E-06 43.2 7.3 30 90-120 108-137 (165)
116 KOG1125 TPR repeat-containing 95.7 0.037 8.1E-07 51.5 7.2 72 47-124 285-356 (579)
117 KOG1156 N-terminal acetyltrans 95.7 0.19 4.1E-06 47.7 11.8 100 45-150 39-157 (700)
118 PF09986 DUF2225: Uncharacteri 95.7 0.45 9.9E-06 39.0 12.9 75 47-121 118-199 (214)
119 COG4235 Cytochrome c biogenesi 95.6 0.059 1.3E-06 46.5 7.8 65 63-130 135-199 (287)
120 PF13424 TPR_12: Tetratricopep 95.6 0.022 4.8E-07 37.9 4.2 31 86-116 4-34 (78)
121 KOG0624 dsRNA-activated protei 95.6 0.094 2E-06 47.0 9.0 73 54-132 196-272 (504)
122 PF13431 TPR_17: Tetratricopep 95.5 0.013 2.8E-07 34.4 2.3 25 84-108 10-34 (34)
123 KOG1174 Anaphase-promoting com 95.4 0.21 4.6E-06 45.6 10.8 112 15-135 407-519 (564)
124 PRK10747 putative protoheme IX 95.4 0.3 6.5E-06 42.9 11.6 68 61-130 129-196 (398)
125 COG5010 TadD Flp pilus assembl 95.2 0.076 1.6E-06 45.1 7.1 67 53-125 106-172 (257)
126 KOG0553 TPR repeat-containing 95.2 0.09 1.9E-06 45.6 7.4 59 62-123 93-151 (304)
127 PRK15331 chaperone protein Sic 95.2 0.44 9.5E-06 38.0 10.8 70 46-121 36-105 (165)
128 KOG4626 O-linked N-acetylgluco 95.1 0.13 2.8E-06 49.2 8.6 83 35-123 307-390 (966)
129 PF14559 TPR_19: Tetratricopep 95.0 0.097 2.1E-06 33.7 5.7 60 29-94 6-66 (68)
130 KOG1155 Anaphase-promoting com 95.0 0.41 8.8E-06 44.2 11.3 127 6-135 405-555 (559)
131 KOG2002 TPR-containing nuclear 94.9 0.22 4.7E-06 49.1 9.9 72 46-120 269-340 (1018)
132 PRK10153 DNA-binding transcrip 94.8 0.44 9.6E-06 44.0 11.5 92 28-126 398-492 (517)
133 KOG0548 Molecular co-chaperone 94.6 0.48 1E-05 44.0 10.9 84 41-130 386-469 (539)
134 KOG4234 TPR repeat-containing 94.5 0.5 1.1E-05 39.7 9.9 96 31-132 112-213 (271)
135 PLN02789 farnesyltranstransfer 94.4 0.42 9.1E-06 41.4 9.7 64 66-132 88-153 (320)
136 PF03704 BTAD: Bacterial trans 94.3 0.57 1.2E-05 34.7 9.3 83 15-113 40-122 (146)
137 KOG1129 TPR repeat-containing 94.2 0.17 3.7E-06 45.2 7.0 88 36-126 346-434 (478)
138 PF12569 NARP1: NMDA receptor- 94.1 0.41 8.9E-06 44.3 9.6 78 47-130 4-81 (517)
139 KOG1840 Kinesin light chain [C 94.0 0.14 3E-06 47.4 6.3 63 52-117 246-313 (508)
140 KOG1173 Anaphase-promoting com 94.0 1.2 2.6E-05 41.9 12.2 85 47-137 455-540 (611)
141 PF14561 TPR_20: Tetratricopep 93.9 0.21 4.5E-06 35.6 5.7 54 69-125 7-62 (90)
142 KOG4340 Uncharacterized conser 93.8 0.1 2.2E-06 46.1 4.7 70 44-119 141-214 (459)
143 COG3071 HemY Uncharacterized e 93.4 0.93 2E-05 40.8 10.1 84 46-132 262-373 (400)
144 PF14863 Alkyl_sulf_dimr: Alky 93.4 0.37 8.1E-06 37.3 6.8 49 87-135 70-118 (141)
145 PF03704 BTAD: Bacterial trans 93.3 1.7 3.7E-05 32.1 10.1 41 86-126 61-101 (146)
146 PF13428 TPR_14: Tetratricopep 93.2 0.21 4.5E-06 30.3 4.2 43 47-95 1-43 (44)
147 KOG4340 Uncharacterized conser 93.0 0.35 7.7E-06 42.8 6.7 58 64-124 24-81 (459)
148 KOG1126 DNA-binding cell divis 92.9 0.92 2E-05 43.0 9.8 81 44-131 554-634 (638)
149 PF14938 SNAP: Soluble NSF att 92.7 1.1 2.4E-05 37.5 9.3 84 47-133 155-245 (282)
150 COG4976 Predicted methyltransf 92.6 0.18 3.9E-06 42.9 4.2 72 53-130 1-72 (287)
151 PF13281 DUF4071: Domain of un 92.5 0.97 2.1E-05 40.4 9.0 83 46-130 178-269 (374)
152 COG4783 Putative Zn-dependent 92.5 1.4 3E-05 40.6 10.2 122 6-133 223-352 (484)
153 KOG4162 Predicted calmodulin-b 92.5 0.91 2E-05 43.9 9.3 95 36-135 466-561 (799)
154 KOG0547 Translocase of outer m 92.4 1.4 3.1E-05 41.1 10.0 79 35-119 415-494 (606)
155 PF09295 ChAPs: ChAPs (Chs5p-A 92.2 2.3 5E-05 38.2 11.1 75 47-127 200-274 (395)
156 KOG0495 HAT repeat protein [RN 92.2 1.5 3.2E-05 42.3 10.2 100 29-134 633-732 (913)
157 PF07721 TPR_4: Tetratricopept 91.8 0.22 4.8E-06 27.2 2.7 24 88-111 2-25 (26)
158 COG5010 TadD Flp pilus assembl 91.8 2.4 5.2E-05 36.1 10.2 89 41-136 61-149 (257)
159 PRK10941 hypothetical protein; 91.2 1.4 3.1E-05 37.5 8.3 77 50-133 184-261 (269)
160 KOG2076 RNA polymerase III tra 91.0 2.4 5.1E-05 41.7 10.4 68 48-121 140-207 (895)
161 PF10579 Rapsyn_N: Rapsyn N-te 90.8 1 2.3E-05 31.9 5.9 54 62-115 18-71 (80)
162 KOG3081 Vesicle coat complex C 90.8 3.4 7.4E-05 35.8 10.1 73 48-123 170-243 (299)
163 TIGR03504 FimV_Cterm FimV C-te 90.8 0.34 7.5E-06 30.3 3.2 38 49-90 1-38 (44)
164 KOG1174 Anaphase-promoting com 90.7 1.5 3.3E-05 40.3 8.3 88 43-136 262-349 (564)
165 KOG1128 Uncharacterized conser 90.7 0.61 1.3E-05 44.9 6.1 58 63-123 498-555 (777)
166 PRK11906 transcriptional regul 90.6 8.4 0.00018 35.4 13.1 106 22-130 266-381 (458)
167 KOG1129 TPR repeat-containing 90.6 0.78 1.7E-05 41.1 6.2 85 30-120 378-462 (478)
168 KOG2581 26S proteasome regulat 90.4 0.86 1.9E-05 41.5 6.5 48 85-133 245-292 (493)
169 COG3629 DnrI DNA-binding trans 90.3 5.3 0.00011 34.4 11.0 112 13-135 123-238 (280)
170 KOG3785 Uncharacterized conser 90.0 3 6.5E-05 37.9 9.5 62 62-129 163-227 (557)
171 PF14938 SNAP: Soluble NSF att 89.8 1.5 3.2E-05 36.7 7.1 78 41-121 106-189 (282)
172 PF12862 Apc5: Anaphase-promot 89.7 0.93 2E-05 31.9 5.1 64 62-125 10-79 (94)
173 PRK10153 DNA-binding transcrip 89.5 8.2 0.00018 35.7 12.3 97 23-120 351-453 (517)
174 PF05843 Suf: Suppressor of fo 89.2 3 6.4E-05 35.1 8.6 93 29-126 16-109 (280)
175 PRK14720 transcript cleavage f 89.2 2.5 5.3E-05 41.9 9.1 84 46-136 115-198 (906)
176 KOG3364 Membrane protein invol 89.0 4.3 9.4E-05 31.9 8.6 90 33-161 58-148 (149)
177 KOG0545 Aryl-hydrocarbon recep 88.4 13 0.00028 32.3 11.7 84 46-135 229-313 (329)
178 COG4700 Uncharacterized protei 87.7 4.6 0.0001 33.7 8.4 84 34-122 73-159 (251)
179 KOG0547 Translocase of outer m 87.6 2 4.4E-05 40.1 6.9 66 50-121 363-428 (606)
180 KOG2376 Signal recognition par 87.2 3.6 7.9E-05 39.0 8.4 76 44-122 172-259 (652)
181 KOG0624 dsRNA-activated protei 87.0 3.9 8.6E-05 37.0 8.2 81 61-144 318-402 (504)
182 KOG1128 Uncharacterized conser 86.9 3.9 8.4E-05 39.6 8.5 75 41-121 513-587 (777)
183 PF10300 DUF3808: Protein of u 86.6 9.9 0.00022 34.6 10.9 86 29-116 248-334 (468)
184 PF13174 TPR_6: Tetratricopept 86.6 1.4 3E-05 24.0 3.5 29 48-79 1-29 (33)
185 KOG0551 Hsp90 co-chaperone CNS 86.4 5.8 0.00013 35.4 8.9 60 62-121 93-153 (390)
186 PF09613 HrpB1_HrpK: Bacterial 85.1 13 0.00029 29.4 9.6 83 43-133 40-122 (160)
187 PLN03081 pentatricopeptide (PP 85.1 7.3 0.00016 36.5 9.5 52 62-116 506-557 (697)
188 COG2956 Predicted N-acetylgluc 85.0 15 0.00032 32.9 10.7 53 64-119 194-246 (389)
189 KOG1310 WD40 repeat protein [G 84.9 5.6 0.00012 37.7 8.4 88 35-125 395-483 (758)
190 COG2956 Predicted N-acetylgluc 84.8 5.4 0.00012 35.6 7.9 71 48-124 108-178 (389)
191 COG0457 NrfG FOG: TPR repeat [ 84.8 9.8 0.00021 26.6 8.0 68 46-119 94-162 (291)
192 COG4575 ElaB Uncharacterized c 84.4 9.4 0.0002 28.3 7.9 74 64-155 15-99 (104)
193 PF13830 DUF4192: Domain of un 84.3 5.7 0.00012 34.1 7.8 70 64-134 252-321 (324)
194 cd02682 MIT_AAA_Arch MIT: doma 83.8 4.2 9.1E-05 28.4 5.5 34 103-136 29-62 (75)
195 PF14689 SPOB_a: Sensor_kinase 83.8 6.6 0.00014 25.9 6.3 31 85-115 19-51 (62)
196 COG4785 NlpI Lipoprotein NlpI, 83.7 6.7 0.00015 33.5 7.7 38 84-121 96-133 (297)
197 cd02683 MIT_1 MIT: domain cont 83.1 4.4 9.6E-05 28.0 5.5 34 103-136 29-62 (77)
198 KOG0550 Molecular chaperone (D 82.9 17 0.00037 33.4 10.4 107 33-145 268-382 (486)
199 PF04212 MIT: MIT (microtubule 82.7 7.8 0.00017 25.6 6.4 34 103-136 28-61 (69)
200 PF11846 DUF3366: Domain of un 82.6 17 0.00037 28.4 9.4 64 59-126 120-183 (193)
201 PLN03218 maturation of RBCL 1; 82.5 31 0.00067 34.9 13.0 93 29-126 664-760 (1060)
202 cd02678 MIT_VPS4 MIT: domain c 81.7 11 0.00025 25.5 7.1 34 103-136 29-62 (75)
203 KOG0376 Serine-threonine phosp 81.3 5.2 0.00011 36.9 6.7 101 32-138 22-123 (476)
204 KOG2471 TPR repeat-containing 81.3 3.2 7E-05 39.0 5.3 47 89-135 621-669 (696)
205 PF11207 DUF2989: Protein of u 81.1 15 0.00032 30.4 8.6 58 46-107 140-198 (203)
206 PRK10132 hypothetical protein; 80.8 20 0.00044 26.5 10.8 37 124-164 72-108 (108)
207 PRK10941 hypothetical protein; 80.3 2.8 6E-05 35.7 4.3 34 89-122 183-216 (269)
208 PLN03218 maturation of RBCL 1; 80.2 35 0.00076 34.5 12.5 56 62-119 661-718 (1060)
209 KOG1156 N-terminal acetyltrans 80.2 27 0.00058 33.7 11.0 93 24-122 78-181 (700)
210 PF10602 RPN7: 26S proteasome 79.9 9.8 0.00021 30.0 7.1 86 28-116 14-102 (177)
211 KOG2376 Signal recognition par 79.7 17 0.00036 34.7 9.4 86 29-123 58-146 (652)
212 KOG0545 Aryl-hydrocarbon recep 79.5 7.3 0.00016 33.8 6.5 62 64-126 199-269 (329)
213 KOG0551 Hsp90 co-chaperone CNS 79.3 16 0.00035 32.7 8.8 79 46-130 118-196 (390)
214 PF10300 DUF3808: Protein of u 78.9 8.8 0.00019 34.9 7.4 72 46-122 304-378 (468)
215 KOG3060 Uncharacterized conser 78.9 19 0.00041 31.2 8.8 70 46-123 153-227 (289)
216 KOG3785 Uncharacterized conser 78.6 4.9 0.00011 36.5 5.5 74 43-126 53-126 (557)
217 PF13431 TPR_17: Tetratricopep 78.6 1.9 4.2E-05 24.9 2.1 30 38-70 3-33 (34)
218 PF04184 ST7: ST7 protein; In 78.6 8 0.00017 36.1 7.0 57 48-109 260-317 (539)
219 PF10602 RPN7: 26S proteasome 78.3 22 0.00048 28.0 8.7 36 84-119 33-68 (177)
220 COG4649 Uncharacterized protei 78.3 24 0.00053 29.1 8.9 64 47-115 132-195 (221)
221 KOG1127 TPR repeat-containing 78.2 4.7 0.0001 40.6 5.6 56 63-121 15-71 (1238)
222 COG4455 ImpE Protein of avirul 78.0 19 0.00042 30.7 8.5 80 55-140 9-89 (273)
223 PLN03081 pentatricopeptide (PP 77.7 25 0.00053 33.0 10.2 33 89-121 496-528 (697)
224 KOG1155 Anaphase-promoting com 77.7 14 0.0003 34.5 8.1 77 54-133 366-444 (559)
225 PF06957 COPI_C: Coatomer (COP 77.2 6.8 0.00015 35.7 6.0 36 96-131 309-344 (422)
226 KOG1550 Extracellular protein 77.1 41 0.00089 31.2 11.3 112 12-134 294-409 (552)
227 smart00745 MIT Microtubule Int 76.8 19 0.00042 24.0 7.0 62 64-136 3-64 (77)
228 KOG2003 TPR repeat-containing 76.4 20 0.00043 33.7 8.8 56 63-121 503-558 (840)
229 COG3071 HemY Uncharacterized e 76.3 53 0.0012 29.8 11.3 93 34-130 104-196 (400)
230 PF02259 FAT: FAT domain; Int 76.0 13 0.00028 30.9 7.2 75 46-123 183-294 (352)
231 KOG2003 TPR repeat-containing 75.7 63 0.0014 30.6 11.8 99 19-123 584-696 (840)
232 KOG4234 TPR repeat-containing 74.8 9.2 0.0002 32.3 5.8 50 85-134 132-181 (271)
233 PF14561 TPR_20: Tetratricopep 74.7 18 0.00039 25.5 6.6 47 27-79 5-51 (90)
234 PRK00523 hypothetical protein; 74.0 5.5 0.00012 27.7 3.6 7 139-145 3-9 (72)
235 KOG1173 Anaphase-promoting com 73.9 8 0.00017 36.6 5.7 64 62-125 426-493 (611)
236 cd02656 MIT MIT: domain contai 73.5 12 0.00027 25.0 5.3 34 103-136 29-62 (75)
237 KOG1840 Kinesin light chain [C 72.3 39 0.00085 31.5 9.8 85 41-128 192-287 (508)
238 KOG1941 Acetylcholine receptor 72.1 11 0.00025 34.3 6.1 44 84-127 203-250 (518)
239 PF09797 NatB_MDM20: N-acetylt 71.6 65 0.0014 27.9 10.7 90 18-110 138-240 (365)
240 PF02184 HAT: HAT (Half-A-TPR) 71.4 4.8 0.0001 23.7 2.4 22 101-122 1-22 (32)
241 PRK04841 transcriptional regul 71.3 25 0.00054 33.6 8.6 71 47-120 409-485 (903)
242 COG3118 Thioredoxin domain-con 71.2 28 0.00061 30.4 8.1 79 42-121 163-270 (304)
243 COG4700 Uncharacterized protei 70.0 65 0.0014 27.0 11.1 85 33-121 108-194 (251)
244 PF11817 Foie-gras_1: Foie gra 70.0 27 0.00059 28.8 7.6 56 61-116 149-207 (247)
245 PRK10404 hypothetical protein; 69.7 23 0.00049 25.9 6.3 25 130-155 72-96 (101)
246 PF05957 DUF883: Bacterial pro 69.6 16 0.00034 25.7 5.4 33 121-154 56-88 (94)
247 PF05808 Podoplanin: Podoplani 69.4 1.5 3.3E-05 34.9 0.0 30 134-163 121-155 (162)
248 COG2976 Uncharacterized protei 69.3 62 0.0013 26.8 9.3 79 46-131 125-203 (207)
249 COG3947 Response regulator con 69.1 20 0.00043 31.7 6.7 39 91-129 283-321 (361)
250 PF12968 DUF3856: Domain of Un 68.9 8.5 0.00019 29.8 4.0 28 89-116 57-84 (144)
251 PF04781 DUF627: Protein of un 68.3 9.8 0.00021 28.5 4.1 28 94-121 3-30 (111)
252 PF08238 Sel1: Sel1 repeat; I 67.7 20 0.00042 20.1 4.7 33 47-79 1-37 (39)
253 COG0457 NrfG FOG: TPR repeat [ 67.7 38 0.00083 23.5 8.9 78 47-128 59-136 (291)
254 KOG1130 Predicted G-alpha GTPa 67.2 33 0.00073 31.9 8.0 71 44-117 272-345 (639)
255 PRK04841 transcriptional regul 66.9 37 0.0008 32.4 8.8 70 50-122 694-766 (903)
256 PLN03077 Protein ECB2; Provisi 66.7 70 0.0015 30.8 10.6 64 63-128 602-665 (857)
257 PLN03077 Protein ECB2; Provisi 65.9 82 0.0018 30.3 10.9 76 44-127 622-697 (857)
258 KOG4507 Uncharacterized conser 65.6 29 0.00062 33.6 7.5 84 46-135 641-724 (886)
259 KOG2053 Mitochondrial inherita 64.4 1.4E+02 0.0031 29.9 12.1 85 29-119 21-109 (932)
260 smart00386 HAT HAT (Half-A-TPR 63.2 12 0.00027 19.7 3.0 22 101-122 1-22 (33)
261 PF13281 DUF4071: Domain of un 62.8 1.2E+02 0.0025 27.3 12.2 88 46-136 140-232 (374)
262 PRK01844 hypothetical protein; 62.5 13 0.00028 25.8 3.6 14 140-153 7-20 (72)
263 COG4941 Predicted RNA polymera 62.3 87 0.0019 28.3 9.5 98 25-132 310-410 (415)
264 KOG3824 Huntingtin interacting 62.1 13 0.00029 33.2 4.4 73 59-134 125-204 (472)
265 PF01102 Glycophorin_A: Glycop 61.2 14 0.0003 28.1 3.9 9 142-150 71-79 (122)
266 KOG0550 Molecular chaperone (D 60.7 18 0.0004 33.2 5.2 74 52-131 174-247 (486)
267 cd02684 MIT_2 MIT: domain cont 60.0 22 0.00048 24.3 4.4 60 66-136 3-62 (75)
268 PF01239 PPTA: Protein prenylt 59.5 14 0.0003 20.6 2.8 24 105-128 1-24 (31)
269 KOG4648 Uncharacterized conser 58.6 92 0.002 28.5 9.0 38 93-130 171-208 (536)
270 PRK00523 hypothetical protein; 58.3 15 0.00033 25.5 3.3 16 139-154 7-22 (72)
271 KOG3026 Splicing factor SPF30 57.7 18 0.00038 30.8 4.2 36 100-135 5-40 (262)
272 PRK01844 hypothetical protein; 57.5 16 0.00035 25.4 3.3 24 140-163 3-27 (72)
273 PF13436 Gly-zipper_OmpA: Glyc 57.4 37 0.0008 25.3 5.6 19 101-119 28-46 (118)
274 PRK11901 hypothetical protein; 56.7 10 0.00022 33.5 2.7 22 137-160 37-58 (327)
275 KOG1915 Cell cycle control pro 56.7 1.5E+02 0.0032 28.3 10.3 97 20-122 41-142 (677)
276 KOG0495 HAT repeat protein [RN 53.9 2.2E+02 0.0047 28.2 11.2 70 62-135 630-699 (913)
277 TIGR01716 RGG_Cterm transcript 53.9 48 0.001 26.1 6.1 112 21-132 94-216 (220)
278 KOG1130 Predicted G-alpha GTPa 53.9 13 0.00028 34.5 3.0 59 49-110 16-78 (639)
279 KOG4648 Uncharacterized conser 53.3 8.4 0.00018 35.0 1.7 29 93-121 103-131 (536)
280 COG2023 RPR2 RNase P subunit R 52.6 25 0.00053 26.2 3.8 32 85-117 12-43 (105)
281 PF05843 Suf: Suppressor of fo 52.0 76 0.0017 26.5 7.3 59 62-123 13-72 (280)
282 KOG2796 Uncharacterized conser 51.7 1.7E+02 0.0037 25.8 10.1 91 48-142 178-309 (366)
283 PF12301 CD99L2: CD99 antigen 50.8 18 0.00038 29.0 3.1 24 137-161 114-137 (169)
284 PRK13184 pknD serine/threonine 50.7 2.3E+02 0.0049 28.6 11.2 88 44-135 509-600 (932)
285 PF06552 TOM20_plant: Plant sp 50.7 70 0.0015 26.1 6.5 53 69-124 10-72 (186)
286 PF13041 PPR_2: PPR repeat fam 50.5 47 0.001 19.9 4.5 32 95-126 11-44 (50)
287 PF04910 Tcf25: Transcriptiona 50.4 54 0.0012 28.9 6.3 37 75-114 31-67 (360)
288 PF04910 Tcf25: Transcriptiona 49.5 30 0.00065 30.5 4.6 89 46-134 39-166 (360)
289 PF08314 Sec39: Secretory path 49.4 67 0.0014 30.7 7.2 113 4-132 408-522 (715)
290 PF10363 DUF2435: Protein of u 49.2 93 0.002 22.1 7.4 71 48-119 2-76 (92)
291 PF09813 Coiled-coil_56: Coile 49.1 38 0.00082 25.0 4.3 25 125-149 39-63 (100)
292 KOG0292 Vesicle coat complex C 49.0 1.1E+02 0.0024 31.0 8.6 37 95-131 1092-1128(1202)
293 PF01535 PPR: PPR repeat; Int 48.8 20 0.00042 18.8 2.2 25 92-116 5-29 (31)
294 KOG2053 Mitochondrial inherita 46.7 1.3E+02 0.0027 30.3 8.6 68 48-121 10-77 (932)
295 TIGR00756 PPR pentatricopeptid 45.5 46 0.001 17.5 3.5 25 92-116 5-29 (35)
296 cd02680 MIT_calpain7_2 MIT: do 45.3 43 0.00092 23.2 3.9 33 65-115 2-34 (75)
297 KOG2062 26S proteasome regulat 45.2 48 0.001 32.7 5.5 59 65-124 38-99 (929)
298 KOG0546 HSP90 co-chaperone CPR 45.2 51 0.0011 29.6 5.3 47 84-130 306-352 (372)
299 KOG4279 Serine/threonine prote 45.1 16 0.00034 36.2 2.3 83 46-130 239-330 (1226)
300 cd00280 TRFH Telomeric Repeat 44.8 1.6E+02 0.0035 24.3 7.8 66 66-133 85-157 (200)
301 COG3763 Uncharacterized protei 44.1 38 0.00082 23.5 3.5 6 158-163 22-27 (71)
302 PF10255 Paf67: RNA polymerase 43.6 35 0.00075 30.9 4.1 53 63-115 135-192 (404)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 42.6 1.2E+02 0.0027 21.5 9.2 59 18-79 9-67 (115)
304 PF12854 PPR_1: PPR repeat 42.6 23 0.00049 20.2 1.9 23 91-113 11-33 (34)
305 KOG3783 Uncharacterized conser 41.5 3.2E+02 0.0069 26.0 12.1 110 22-131 422-535 (546)
306 KOG3824 Huntingtin interacting 41.4 37 0.00081 30.5 3.9 44 82-125 109-154 (472)
307 TIGR00823 EIIA-LAC phosphotran 41.4 42 0.00092 24.3 3.6 29 87-115 17-45 (99)
308 cd02681 MIT_calpain7_1 MIT: do 41.3 1.1E+02 0.0024 21.0 5.6 42 95-136 14-63 (76)
309 KOG1127 TPR repeat-containing 41.3 84 0.0018 32.1 6.6 70 62-134 574-643 (1238)
310 cd02677 MIT_SNX15 MIT: domain 41.2 61 0.0013 22.2 4.2 60 66-136 3-62 (75)
311 cd00215 PTS_IIA_lac PTS_IIA, P 40.9 44 0.00096 24.2 3.6 27 88-114 16-42 (97)
312 smart00671 SEL1 Sel1-like repe 40.8 61 0.0013 17.5 3.6 31 48-78 2-33 (36)
313 PF13646 HEAT_2: HEAT repeats; 40.4 1E+02 0.0022 20.1 6.8 67 44-120 11-77 (88)
314 PF03186 CobD_Cbib: CobD/Cbib 40.0 1.3E+02 0.0029 25.6 7.1 58 97-155 105-165 (295)
315 KOG4814 Uncharacterized conser 39.5 3.9E+02 0.0084 26.4 10.6 117 5-121 298-428 (872)
316 PF02255 PTS_IIA: PTS system, 39.4 50 0.0011 23.7 3.7 29 87-115 14-42 (96)
317 KOG3081 Vesicle coat complex C 39.3 2.6E+02 0.0057 24.4 9.5 81 43-129 203-284 (299)
318 PRK01209 cobD cobalamin biosyn 38.9 1.5E+02 0.0033 25.5 7.3 47 98-144 109-158 (312)
319 smart00288 VHS Domain present 38.7 1.6E+02 0.0036 21.9 10.1 59 18-79 9-67 (133)
320 PF05356 Phage_Coat_B: Phage C 38.4 57 0.0012 23.0 3.7 13 151-163 70-82 (83)
321 PF04286 DUF445: Protein of un 38.3 69 0.0015 27.0 5.0 16 145-160 348-363 (367)
322 PRK09591 celC cellobiose phosp 38.3 50 0.0011 24.2 3.6 29 87-115 20-48 (104)
323 PF15061 DUF4538: Domain of un 38.2 29 0.00064 23.1 2.1 12 148-159 10-21 (58)
324 PRK13467 F0F1 ATP synthase sub 37.9 64 0.0014 21.9 3.8 9 138-146 4-12 (66)
325 PF10516 SHNi-TPR: SHNi-TPR; 37.3 81 0.0018 18.9 3.9 29 88-116 2-30 (38)
326 TIGR03789 pdsO proteobacterial 37.2 29 0.00063 29.1 2.5 13 132-144 37-49 (239)
327 PF05131 Pep3_Vps18: Pep3/Vps1 37.1 20 0.00043 27.8 1.4 24 85-112 105-128 (147)
328 COG2826 Tra8 Transposase and i 36.9 40 0.00087 29.6 3.3 41 11-51 267-310 (318)
329 PF09686 Plasmid_RAQPRD: Plasm 36.8 46 0.00099 23.5 3.1 41 30-73 20-63 (81)
330 PF12732 YtxH: YtxH-like prote 36.8 37 0.00081 22.8 2.6 7 149-155 11-17 (74)
331 COG4218 MtrF Tetrahydromethano 36.7 90 0.002 21.7 4.4 23 118-140 14-36 (73)
332 KOG1915 Cell cycle control pro 36.6 3.9E+02 0.0084 25.6 10.3 91 25-121 84-175 (677)
333 PF09613 HrpB1_HrpK: Bacterial 36.6 2.2E+02 0.0047 22.6 11.1 90 49-144 12-101 (160)
334 COG1447 CelC Phosphotransferas 35.6 58 0.0013 24.2 3.6 26 88-113 20-45 (105)
335 PF12862 Apc5: Anaphase-promot 35.5 81 0.0018 21.8 4.3 32 91-122 2-33 (94)
336 PF10366 Vps39_1: Vacuolar sor 35.5 85 0.0018 22.9 4.5 51 54-115 17-67 (108)
337 PF13858 DUF4199: Protein of u 35.3 1.3E+02 0.0029 22.5 5.8 19 146-164 145-163 (163)
338 KOG3540 Beta amyloid precursor 35.2 51 0.0011 31.0 3.9 28 136-164 547-574 (615)
339 PF10345 Cohesin_load: Cohesin 35.2 3.8E+02 0.0082 25.0 11.5 111 6-121 325-446 (608)
340 TIGR02561 HrpB1_HrpK type III 35.2 2.3E+02 0.0049 22.4 8.5 78 46-131 43-120 (153)
341 KOG4459 Membrane-associated pr 35.1 29 0.00062 32.1 2.3 39 86-124 132-170 (471)
342 PRK07630 CobD/CbiB family prot 35.0 1.8E+02 0.0039 25.1 7.1 46 99-144 106-154 (312)
343 PRK10454 PTS system N,N'-diace 35.0 60 0.0013 24.3 3.7 29 87-115 31-59 (115)
344 KOG4555 TPR repeat-containing 34.6 1.4E+02 0.0031 23.7 5.7 60 54-119 50-109 (175)
345 PF01669 Myelin_MBP: Myelin ba 34.4 13 0.00029 28.3 0.0 18 8-25 23-40 (123)
346 KOG1586 Protein required for f 34.2 3.1E+02 0.0067 23.7 11.3 106 25-131 125-242 (288)
347 PF13812 PPR_3: Pentatricopept 33.4 80 0.0017 16.7 3.8 26 90-115 4-29 (34)
348 COG4062 MtrB Tetrahydromethano 32.9 86 0.0019 23.3 4.0 24 113-136 30-53 (108)
349 COG3107 LppC Putative lipoprot 32.8 3.6E+02 0.0079 25.8 9.0 98 41-142 57-155 (604)
350 PF11181 YflT: Heat induced st 32.6 24 0.00052 25.2 1.1 32 6-37 56-94 (103)
351 PRK08878 adenosylcobinamide-ph 32.4 1.9E+02 0.004 25.2 6.8 56 99-155 117-175 (317)
352 COG5415 Predicted integral mem 32.3 3.1E+02 0.0067 23.1 8.8 45 12-58 1-50 (251)
353 KOG4642 Chaperone-dependent E3 32.2 85 0.0018 27.1 4.5 31 89-119 46-76 (284)
354 PF12304 BCLP: Beta-casein lik 31.9 59 0.0013 26.6 3.3 24 112-135 24-47 (188)
355 TIGR02561 HrpB1_HrpK type III 31.7 2.6E+02 0.0057 22.1 9.3 86 54-145 17-102 (153)
356 PF11846 DUF3366: Domain of un 31.5 1.7E+02 0.0038 22.7 6.0 53 23-78 120-172 (193)
357 COG2909 MalT ATP-dependent tra 30.9 3.2E+02 0.0068 27.5 8.6 75 46-121 414-492 (894)
358 COG2912 Uncharacterized conser 30.8 1.1E+02 0.0024 26.3 5.0 68 62-133 193-261 (269)
359 PF00244 14-3-3: 14-3-3 protei 30.7 2E+02 0.0044 23.6 6.5 72 63-136 14-88 (236)
360 KOG1070 rRNA processing protei 30.5 1.8E+02 0.0039 31.0 7.0 62 63-128 1543-1604(1710)
361 PF04781 DUF627: Protein of un 30.4 2.3E+02 0.005 21.1 6.8 27 54-83 3-29 (111)
362 COG2912 Uncharacterized conser 30.3 99 0.0021 26.6 4.6 31 91-121 185-215 (269)
363 PF11981 DUF3482: Domain of un 30.0 61 0.0013 28.0 3.3 8 137-144 155-162 (292)
364 PF05461 ApoL: Apolipoprotein 29.9 2E+02 0.0044 25.0 6.6 14 109-122 59-72 (313)
365 PF04184 ST7: ST7 protein; In 29.7 3.2E+02 0.007 25.8 8.1 29 91-119 263-291 (539)
366 KOG1941 Acetylcholine receptor 29.6 96 0.0021 28.5 4.6 75 48-125 7-85 (518)
367 KOG1550 Extracellular protein 29.5 2.9E+02 0.0063 25.6 7.9 75 45-124 242-330 (552)
368 PF13807 GNVR: G-rich domain o 29.2 96 0.0021 21.1 3.7 13 149-162 68-80 (82)
369 TIGR00380 cobD cobalamin biosy 29.1 2.7E+02 0.0058 24.1 7.2 47 99-145 114-163 (305)
370 KOG3550 Receptor targeting pro 28.8 3.1E+02 0.0067 22.1 7.2 70 63-153 11-80 (207)
371 PF02479 Herpes_IE68: Herpesvi 28.7 65 0.0014 24.9 3.0 30 106-137 78-107 (132)
372 TIGR03818 MotA1 flagellar moto 28.1 3.8E+02 0.0083 22.9 9.1 42 60-101 48-93 (282)
373 KOG2300 Uncharacterized conser 28.1 1.4E+02 0.0031 28.3 5.5 69 49-117 406-475 (629)
374 COG4105 ComL DNA uptake lipopr 27.9 3.8E+02 0.0083 22.8 13.3 93 43-141 67-168 (254)
375 COG2015 Alkyl sulfatase and re 27.7 1.1E+02 0.0025 28.9 4.8 46 88-133 453-498 (655)
376 COG3898 Uncharacterized membra 27.6 2.6E+02 0.0056 26.0 7.0 49 84-133 326-374 (531)
377 PF14235 DUF4337: Domain of un 27.5 1.5E+02 0.0032 23.2 4.9 22 54-75 42-63 (157)
378 PF13179 DUF4006: Family of un 27.5 87 0.0019 21.4 3.1 12 137-148 11-22 (66)
379 KOG4555 TPR repeat-containing 27.5 93 0.002 24.7 3.6 42 92-133 48-96 (175)
380 PF09670 Cas_Cas02710: CRISPR- 27.1 4.4E+02 0.0095 23.3 10.0 62 51-117 135-199 (379)
381 PF05818 TraT: Enterobacterial 27.0 52 0.0011 27.4 2.3 9 87-95 58-66 (215)
382 PF08599 Nbs1_C: DNA damage re 26.9 69 0.0015 21.8 2.5 17 8-24 3-20 (65)
383 PF04010 DUF357: Protein of un 26.9 1E+02 0.0022 21.2 3.5 32 27-58 28-65 (75)
384 PRK04778 septation ring format 26.8 5.2E+02 0.011 24.1 9.9 100 20-119 440-552 (569)
385 PF08785 Ku_PK_bind: Ku C term 26.7 83 0.0018 23.2 3.2 33 100-132 40-79 (120)
386 COG1270 CbiB Cobalamin biosynt 26.6 2.2E+02 0.0047 25.1 6.2 49 97-145 112-163 (320)
387 PRK11638 lipopolysaccharide bi 26.3 29 0.00063 30.6 0.7 29 134-163 309-339 (342)
388 KOG0212 Uncharacterized conser 26.0 91 0.002 29.9 3.9 46 96-150 30-75 (675)
389 KOG2114 Vacuolar assembly/sort 25.8 3.5E+02 0.0077 27.2 7.9 39 65-111 465-514 (933)
390 PF12768 Rax2: Cortical protei 25.2 49 0.0011 28.3 1.9 24 139-163 231-256 (281)
391 PF12652 CotJB: CotJB protein; 25.0 1.6E+02 0.0034 20.5 4.2 34 101-134 9-42 (78)
392 COG3629 DnrI DNA-binding trans 24.9 1.5E+02 0.0033 25.5 4.8 41 85-125 151-191 (280)
393 PRK15180 Vi polysaccharide bio 24.8 1.5E+02 0.0032 28.4 5.0 30 88-117 777-806 (831)
394 PF11349 DUF3151: Protein of u 24.7 1.1E+02 0.0023 23.6 3.5 39 84-122 89-127 (129)
395 PRK06743 flagellar motor prote 24.4 4.4E+02 0.0094 22.3 12.0 77 56-133 44-128 (254)
396 PRK03954 ribonuclease P protei 24.2 1.3E+02 0.0029 22.7 3.9 31 85-116 20-50 (121)
397 cd00923 Cyt_c_Oxidase_Va Cytoc 24.0 2E+02 0.0043 21.3 4.7 42 96-137 51-93 (103)
398 PF00790 VHS: VHS domain; Int 24.0 3.1E+02 0.0067 20.4 10.0 111 18-132 14-138 (140)
399 PF12537 DUF3735: Protein of u 23.7 1.2E+02 0.0025 20.5 3.2 18 129-146 5-22 (72)
400 PF05440 MtrB: Tetrahydrometha 23.3 1.5E+02 0.0032 21.7 3.9 22 114-135 30-51 (97)
401 PRK13731 conjugal transfer sur 23.1 70 0.0015 27.1 2.4 19 85-103 86-104 (243)
402 PF07980 SusD: SusD family; I 23.1 3.7E+02 0.0081 21.0 6.8 31 86-116 132-162 (266)
403 cd04391 RhoGAP_ARHGAP18 RhoGAP 22.9 4E+02 0.0087 21.3 9.4 92 5-101 53-145 (216)
404 COG5116 RPN2 26S proteasome re 22.6 7.5E+02 0.016 24.4 10.1 28 83-110 54-82 (926)
405 COG2909 MalT ATP-dependent tra 22.6 4.3E+02 0.0093 26.6 7.9 65 52-119 585-650 (894)
406 TIGR02185 Trep_Strep conserved 22.6 3.6E+02 0.0078 21.4 6.4 27 137-163 158-185 (189)
407 PF12417 DUF3669: Zinc finger 22.5 1.8E+02 0.0038 19.7 3.9 30 11-40 22-57 (72)
408 PRK08456 flagellar motor prote 22.2 4.7E+02 0.01 21.9 11.7 20 60-79 50-69 (257)
409 COG2976 Uncharacterized protei 22.1 3.3E+02 0.0071 22.6 6.1 61 49-112 91-151 (207)
410 PF01024 Colicin: Colicin pore 22.1 4.4E+02 0.0095 21.5 7.4 29 50-79 38-66 (187)
411 PF11021 DUF2613: Protein of u 22.1 1.1E+02 0.0025 20.1 2.8 15 140-154 5-19 (56)
412 PF13170 DUF4003: Protein of u 21.9 5.1E+02 0.011 22.2 10.1 91 25-118 33-134 (297)
413 KOG0615 Serine/threonine prote 21.8 53 0.0011 30.3 1.5 18 104-121 411-428 (475)
414 PRK10381 LPS O-antigen length 21.7 98 0.0021 27.5 3.2 16 25-40 179-194 (377)
415 TIGR01987 HI0074 nucleotidyltr 21.6 1E+02 0.0022 23.2 2.8 24 99-122 1-24 (123)
416 PHA03265 envelope glycoprotein 21.5 28 0.00061 31.3 -0.3 25 139-163 349-374 (402)
417 PRK10769 folA dihydrofolate re 21.3 85 0.0018 24.4 2.4 22 15-36 13-34 (159)
418 PF04053 Coatomer_WDAD: Coatom 21.3 1.5E+02 0.0033 26.9 4.4 53 46-112 320-372 (443)
419 cd03565 VHS_Tom1 VHS domain fa 21.3 3.7E+02 0.008 20.3 10.5 60 18-79 10-69 (141)
420 PF09127 Leuk-A4-hydro_C: Leuk 21.1 3.7E+02 0.0081 20.3 6.5 49 25-75 49-97 (143)
421 PF04124 Dor1: Dor1-like famil 21.1 2.7E+02 0.0059 24.0 5.8 46 96-141 115-165 (338)
422 PF04277 OAD_gamma: Oxaloaceta 21.1 1.7E+02 0.0037 19.5 3.7 13 139-151 9-21 (79)
423 PF08374 Protocadherin: Protoc 21.0 43 0.00094 28.0 0.7 21 142-162 41-61 (221)
424 PF10579 Rapsyn_N: Rapsyn N-te 20.9 3.1E+02 0.0068 19.3 5.4 32 97-128 16-47 (80)
425 COG3014 Uncharacterized protei 20.9 1.2E+02 0.0027 27.5 3.6 29 89-117 127-155 (449)
426 PF02259 FAT: FAT domain; Int 20.9 2.3E+02 0.0049 23.3 5.1 28 88-115 30-57 (352)
427 PF04406 TP6A_N: Type IIB DNA 20.7 57 0.0012 21.6 1.2 49 70-119 15-63 (68)
428 PF03727 Hexokinase_2: Hexokin 20.6 2.2E+02 0.0048 23.4 4.9 39 100-138 124-162 (243)
429 PRK08124 flagellar motor prote 20.5 5.2E+02 0.011 21.7 12.0 19 60-78 50-68 (263)
430 PF04063 DUF383: Domain of unk 20.2 4.4E+02 0.0096 21.2 6.5 70 68-142 52-126 (192)
431 PRK10987 regulatory protein Am 20.2 4.8E+02 0.01 22.1 7.0 46 98-144 98-149 (284)
No 1
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.2e-44 Score=274.84 Aligned_cols=140 Identities=44% Similarity=0.681 Sum_probs=125.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176 16 FTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV 95 (164)
Q Consensus 16 ~~~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl 95 (164)
|..-+..||+..+.+...|+...+.+.+.++.+++|+|||+||||++..|+++||.+||+++++ .+|.++|||+||||+
T Consensus 1 ~~~~~~~p~a~~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAv 79 (149)
T KOG3364|consen 1 FSGSLKEPWAIEDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAV 79 (149)
T ss_pred CCccccchhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHH
Confidence 4566889999877777766665555667889999999999999999999999999999999983 789999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGI 156 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g~~ 156 (164)
||||+++|++|++|++.+|++||+|+||.+|++.|+++|+|||+|||+|+||++++++|.+
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegliGm~v~gGa~~~v~gl~ 140 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGLIGMVVVGGAALAVGGLA 140 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcceeeeeehhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988865554443
No 2
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=99.89 E-value=2.3e-23 Score=136.68 Aligned_cols=53 Identities=53% Similarity=0.861 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhH
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGV 139 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGl 139 (164)
|||+||||+||||+|||++|++|++.+|++||+|+||++|++.|+++|++||+
T Consensus 1 Rd~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 1 RDCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred ChhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhccCC
Confidence 79999999999999999999999999999999999999999999999999996
No 3
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=99.36 E-value=1e-12 Score=79.37 Aligned_cols=33 Identities=36% Similarity=0.635 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
++++|||||+||||+++.|+++||.||+++++.
T Consensus 1 ~qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSNNREDQQEGIALLEELYRD 33 (35)
T ss_dssp -HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCC
T ss_pred CcchhHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999998875
No 4
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.87 E-value=1.7e-08 Score=66.11 Aligned_cols=65 Identities=32% Similarity=0.453 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
|.+|..++ +.++..+|++.++.++.. + ++..+++|.||..++++|+|++|+.+++++++..|+|+
T Consensus 1 ~~~a~~~~---~~g~~~~A~~~~~~~l~~--~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALY---QQGDYDEAIAAFEQALKQ--D-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH---HCTHHHHHHHHHHHHHCC--S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHH---HcCCHHHHHHHHHHHHHH--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46788888 778999999999999996 3 46779999999999999999999999999999999985
No 5
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=7e-08 Score=63.69 Aligned_cols=67 Identities=24% Similarity=0.464 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhCC
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIAP 118 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~eP 118 (164)
++++.+++|..+. +.++..+|+..++..+.. +| ...+.+|++|++|+++| +|++|+++++++|+++|
T Consensus 2 ~a~~~~~~g~~~~---~~~~~~~A~~~~~~ai~~--~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYF---QQGDYEEAIEYFEKAIEL--DP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH--ST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5788899999999 788999999999999996 45 45699999999999999 89999999999999999
No 6
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=3.3e-07 Score=67.15 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=78.9
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+.+.+... ..++.++...+++|+++. ..++..+++..++..+.. +| ...+.+|++|..|+..|++++|.++++
T Consensus 36 A~~~~~~~~~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 36 ALKLFQLLAAYDPYNSRYWLGLAACCQ---MLKEYEEAIDAYALAAAL--DP-DDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc--CC-CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444 446668899999999999 667888999999998875 34 456999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHhHh
Q 031176 112 QCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
.+++++|++.....+++.+...+
T Consensus 110 ~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 110 LAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHhccccchHHHHHHHHHHHH
Confidence 99999999999888888776654
No 7
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.75 E-value=3e-08 Score=65.15 Aligned_cols=66 Identities=29% Similarity=0.475 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
..++..+|+++++.++.. +| +..+.++.||..|++.|+|++|+..+++++..+|+|+.+..|+..|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 457889999999999986 34 5669999999999999999999999999999999999999998765
No 8
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=2.7e-07 Score=74.23 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=73.2
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. .-++.+.+..++||-+|..+.......+++++|++.+.. +|. ..+.+++||+.++++|+|++|..+|+++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DAN-EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444 334557889999999886554444568999999999986 454 4589999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHh
Q 031176 114 LEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~Ie~ 132 (164)
|+.+|.+.+-..+-+.|+.
T Consensus 171 L~l~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 171 LDLNSPRVNRTQLVESINM 189 (198)
T ss_pred HhhCCCCccHHHHHHHHHH
Confidence 9999997766555455554
No 9
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=9.4e-07 Score=67.45 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=76.4
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
..++.+.++.+++|.++. ..++..+|+..++..+.. +| ..-+.+|++++++.++|++++|+.+++++|++.|+|
T Consensus 52 ~~~P~~~~a~~~lg~~~~---~~g~~~~A~~~y~~Al~l--~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 52 MAQPWSWRAHIALAGTWM---MLKEYTTAINFYGHALML--DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HcCCCcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456668899999999999 788899999999999985 44 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q 031176 121 RQALGLKKTVEDRI 134 (164)
Q Consensus 121 ~Qa~~L~~~Ie~~~ 134 (164)
.++..++..+....
T Consensus 126 ~~~~~~~~~~~~~l 139 (144)
T PRK15359 126 ASWSEIRQNAQIMV 139 (144)
T ss_pred hHHHHHHHHHHHHH
Confidence 99998888776543
No 10
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.63 E-value=4.9e-07 Score=78.71 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=85.8
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
..+...|.+. ..++.+....+++|.+++ ..++..+|+..++..+.. +| ....++|.+|.+|+++|+|++|+.+
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~---~~g~~~eAl~~~~~Al~l--~P-~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANI---KLGNFTEAVADANKAIEL--DP-SLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445556666 556667899999999999 567889999999999986 34 5568999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 110 LEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 110 ~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
++++|+++|+|.++..+...++.++..
T Consensus 93 ~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 93 LEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888865
No 11
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.53 E-value=4.6e-07 Score=60.25 Aligned_cols=67 Identities=28% Similarity=0.421 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
+.++..++++.++..+.. +| +....+++.|..++++|+|++|++.++++|+..|++.++..++..|+
T Consensus 7 ~~~~~~~A~~~~~~~l~~--~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l~ 73 (73)
T PF13371_consen 7 QQEDYEEALEVLERALEL--DP-DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAMLN 73 (73)
T ss_pred hCCCHHHHHHHHHHHHHh--Cc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhcC
Confidence 567889999999999986 45 45699999999999999999999999999999999999999988763
No 12
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.3e-06 Score=74.86 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=82.8
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.....|.+. .-..++++..-.||.+|++|..+.+..++..+|.+.+.. ||.+. ..+||||.+++..|+|.+|...|
T Consensus 174 ~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~i-ral~lLA~~afe~g~~~~A~~~W 250 (287)
T COG4235 174 DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANI-RALSLLAFAAFEQGDYAEAAAAW 250 (287)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccH-HHHHHHHHHHHHcccHHHHHHHH
Confidence 346677777 335568999999999999999999999999999999996 55554 89999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHH
Q 031176 111 EQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~~~I 130 (164)
+.+|...|.|-.-..+-+.+
T Consensus 251 q~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 251 QMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHhcCCCCCchHHHHHHH
Confidence 99999999988777665544
No 13
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=3.5e-06 Score=59.42 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
.+++.|.++.++. ..++...|+.+++.++....+.....+.++.++..+.+++++++|.++++++++..|++.+++.
T Consensus 38 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 38 APNAHYWLGEAYY---AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred cHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 4688999999999 7778889999999988752222234688999999999999999999999999999999998776
Q ss_pred HH
Q 031176 126 LK 127 (164)
Q Consensus 126 L~ 127 (164)
-.
T Consensus 115 ~~ 116 (119)
T TIGR02795 115 AQ 116 (119)
T ss_pred HH
Confidence 53
No 14
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.40 E-value=6.4e-07 Score=51.37 Aligned_cols=33 Identities=33% Similarity=0.704 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+.+|++|..|+++|+|++|+++++++|+++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 679999999999999999999999999999987
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=5.5e-06 Score=60.62 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=73.3
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
..++.+....+.+|+.++ ..++..+++++++.++.. +| ...+.++.+|..++++|+|++|..+++++++.+|++
T Consensus 11 ~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLY---QQGRYDEALKLFQLLAAY--DP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred cCChhhHHHHHHHHHHHH---HcccHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344456788999999999 567788999999998885 34 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q 031176 121 RQALGLKKTVEDRI 134 (164)
Q Consensus 121 ~Qa~~L~~~Ie~~~ 134 (164)
.+..-..-.+-...
T Consensus 85 ~~~~~~la~~~~~~ 98 (135)
T TIGR02552 85 PRPYFHAAECLLAL 98 (135)
T ss_pred hHHHHHHHHHHHHc
Confidence 88877666555443
No 16
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.29 E-value=1.4e-06 Score=50.37 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+.||.+|..|+.+++|++|+.+++++|+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 579999999999999999999999999999986
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.23 E-value=9.3e-06 Score=67.11 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=65.3
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+++.|.+. ..++.+++....++|.|+ +.++..++.++|+.+... .+...+.+..+|.+|.++|+|++|+.+++
T Consensus 165 A~~~~~~al~~~P~~~~~~~~l~~~li---~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 165 ALRDYRKALELDPDDPDARNALAWLLI---DMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH---HCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccc
Confidence 35555555 445668899999999999 555666666666665554 12334788899999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHH
Q 031176 112 QCLEIAPDWRQALGLKK 128 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~ 128 (164)
++++..|+|.......-
T Consensus 239 ~~~~~~p~d~~~~~~~a 255 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYA 255 (280)
T ss_dssp HHHHHSTT-HHHHHHHH
T ss_pred ccccccccccccccccc
Confidence 99999999998766443
No 18
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=1.8e-05 Score=55.77 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+++.|..+-.+. ..++..++++.++.++..+.+.....+++|.++..+++.++|+.|..+++.+++..|+++.
T Consensus 2 ~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVL---KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence 467888999998 6678899999999988863222333589999999999999999999999999999999753
No 19
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=4.9e-05 Score=48.59 Aligned_cols=65 Identities=23% Similarity=0.461 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP 118 (164)
.+.+.++.++. ..++..+|+..++..+.. .| ...+.++.++..+...|++++|..+++.+++..|
T Consensus 35 ~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 35 DAYYNLAAAYY---KLGKYEEALEDYEKALEL--DP-DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhC--CC-cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 44444555554 334455555555554443 12 1224555555555555555555555555555554
No 20
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.13 E-value=3.7e-05 Score=59.62 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=68.1
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
......|+++..+. ..++.++|+..+++.+....++...-.+++.+|..++++|+|++|+.+++++++..|++..+.
T Consensus 33 ~~a~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQ---ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 35667788888887 678888999999998875223333457999999999999999999999999999999998876
Q ss_pred HHHHHHH
Q 031176 125 GLKKTVE 131 (164)
Q Consensus 125 ~L~~~Ie 131 (164)
...-.+-
T Consensus 110 ~~lg~~~ 116 (172)
T PRK02603 110 NNIAVIY 116 (172)
T ss_pred HHHHHHH
Confidence 6554443
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.10 E-value=9e-05 Score=56.39 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=66.1
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+.+.|.+. ..++......+++++.+. ..++..++++.++..+.. .......+.++.++..+++.|+|++|..+++
T Consensus 84 A~~~~~~al~~~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 84 AEDSFRRALTLNPNNGDVLNNYGTFLC---QQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH---HcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444 334456778888888888 566788888888887764 2223445778888999999999999999999
Q ss_pred HHHhhCCCcHHHHHHH
Q 031176 112 QCLEIAPDWRQALGLK 127 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~ 127 (164)
++++..|++..+....
T Consensus 160 ~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 160 RALQIDPQRPESLLEL 175 (234)
T ss_pred HHHHhCcCChHHHHHH
Confidence 9999999886554433
No 22
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.08 E-value=1.6e-05 Score=66.08 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=66.5
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.+++..|.-|..++ ..++..+|++.|++++...-.++......|.||.+||++++|++|..+++++++..|+|+.+-
T Consensus 30 ~~~~~~Y~~A~~~~---~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 30 NPPSEIYATAQQKL---QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 47788889999999 677888999999999886444445567789999999999999999999999999999998664
No 23
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.07 E-value=2.3e-05 Score=59.70 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
+..+.+++++. ..++..+++..++.++.. +| ...+.++.+|..+.++|+|++|..+++++++++|++..+..-.
T Consensus 25 ~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 25 ETVYASGYASW---QEGDYSRAVIDFSWLVMA--QP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34677888888 778888999999999986 34 5669999999999999999999999999999999998776655
Q ss_pred HHH
Q 031176 128 KTV 130 (164)
Q Consensus 128 ~~I 130 (164)
-.+
T Consensus 99 g~~ 101 (144)
T PRK15359 99 GVC 101 (144)
T ss_pred HHH
Confidence 443
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=8.4e-05 Score=47.46 Aligned_cols=70 Identities=26% Similarity=0.447 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
+.++.|..+. ..++..+++..++..+.. .|. ....++.+|..++..++|++|.++++.+++..|.+..+.
T Consensus 2 ~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 2 ALLNLGNLYY---KLGDYDEALEYYEKALEL--DPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHH---HHhcHHHHHHHHHHHHhc--CCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHH
Confidence 4677888888 467888999999998885 333 348999999999999999999999999999999998443
No 25
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=0.00013 Score=58.64 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHhh
Q 031176 23 PWCDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG-YYRT 100 (164)
Q Consensus 23 p~~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg-~~kl 100 (164)
|.++.++...+-..+.+. ..++.+.+..+.++..+. ..++...|+..++..+.. +| +..+.++.+|.+ ++..
T Consensus 48 ~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~---~~g~~~~A~~a~~~Al~l--~P-~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 48 QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYL---WRNDYDNALLAYRQALQL--RG-ENAELYAALATVLYYQA 121 (198)
T ss_pred cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhc
Confidence 444555556666666666 556678899999999999 788899999999998886 34 456999999997 4787
Q ss_pred cc--hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 101 GE--YAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 101 ~~--Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
|+ +++|++.++++|+.+|+|..+..+.-.+...
T Consensus 122 g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 88 5999999999999999999998887666543
No 26
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.02 E-value=2.6e-05 Score=62.57 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.+++..|..|..++ +.++..+|+..|+.+....-..+...++++.+|.+||+.++|+.|...++++++..|+++.+-
T Consensus 3 ~~~~~lY~~a~~~~---~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 3 DTAEALYQKALEAL---QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp --HHHHHHHHHHHH---HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 46788999999999 788999999999999876444457789999999999999999999999999999999988643
No 27
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=3.7e-05 Score=52.85 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
.....|.+|.++. +.++..+|+++++. ... ++ ...++.|.+|.+++++|+|++|++++++
T Consensus 24 ~~~~~~~la~~~~---~~~~y~~A~~~~~~-~~~--~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 24 NSAYLYNLAQCYF---QQGKYEEAIELLQK-LKL--DP-SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHH---HTTHHHHHHHHHHC-HTH--HH-CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---HCCCHHHHHHHHHH-hCC--CC-CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4456666788888 66678888888877 332 12 3458888888888888888888888765
No 28
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.99 E-value=0.00012 Score=59.16 Aligned_cols=90 Identities=13% Similarity=0.233 Sum_probs=67.7
Q ss_pred hcCCCchHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc-----------
Q 031176 41 NDDKQKSESIMRLSWALVHSRQA-------EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE----------- 102 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~-------~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~----------- 102 (164)
..++.+.+...+.+.+|+..++- .-+++||+-|++.+.- .+..+|.+|.|+.+|+-++.
T Consensus 19 ~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~ 95 (186)
T PF06552_consen 19 AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEY 95 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 55667889999999999876332 5678888888888886 45788999999999998876
Q ss_pred hHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHhH
Q 031176 103 YAKSRQILEQCLEIAPDWRQAL----------GLKKTVEDR 133 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~----------~L~~~Ie~~ 133 (164)
|++|..|.+++.+.+|+|.-++ +|+..|.+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999999999998554 555555554
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.99 E-value=5.9e-05 Score=60.33 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++.+.+..|+.+.++. +.++...|+..++.++....+.+...+.+|.+|..|++.++|++|+..++.+++..|++..
T Consensus 29 ~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 29 EEWPAEELYEEAKEAL---DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred ccCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 3557899999999999 5677889999999988863222344589999999999999999999999999999999886
Q ss_pred H
Q 031176 123 A 123 (164)
Q Consensus 123 a 123 (164)
+
T Consensus 106 ~ 106 (235)
T TIGR03302 106 A 106 (235)
T ss_pred h
Confidence 3
No 30
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.97 E-value=0.00016 Score=61.11 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.....|+.|.+|+.. .+++.+++..|+.++...-+.....+.+|+||..||..|+|++|+.+++.+++..|+++.+-
T Consensus 141 ~e~~~Y~~A~~l~~~--~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 141 DANTDYNAAIALVQD--KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred CHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 456667777777422 25566777777777765212222357777777777777777777777777777777754333
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.95 E-value=4.1e-05 Score=60.51 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.-+..+.||+.|. +.+++..|..+++-++.- +| ...++||.|+..+-.+|+|++|..++.+++.++|+|+..
T Consensus 34 ~l~~lY~~A~~ly---~~G~l~~A~~~f~~L~~~--Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 34 PLNTLYRYAMQLM---EVKEFAGAARLFQLLTIY--DA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 4566778888888 777888888888887775 44 555888888888888888888888888888888888754
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=97.95 E-value=0.00012 Score=67.01 Aligned_cols=90 Identities=13% Similarity=0.249 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176 28 DIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS 106 (164)
Q Consensus 28 ~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A 106 (164)
.....+...+.+. .-++.++++.+.+|..+. ..++..+|+..++..+.. +| +..+.+|++|..+...|+|++|
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~---~~g~~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINT---IHSEYIVGSLLFKQANLL--SP-ISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 3456667777777 567778899999998888 456788999999999986 35 4458999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHH
Q 031176 107 RQILEQCLEIAPDWRQA 123 (164)
Q Consensus 107 ~~~~~~lL~~eP~n~Qa 123 (164)
..+++++++++|.+..+
T Consensus 392 i~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 392 LQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHHhcCCCChhh
Confidence 99999999999998755
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.95 E-value=7.3e-05 Score=73.33 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=74.3
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
++..|.+. ..++.++...++++++|. +.++..+++++++..+.. +| +..+.+|+||.++.++|+|++|+.+++
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~---~~G~~eeAi~~l~~AL~l--~P-~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALW---DSGDIAQSREMLERAHKG--LP-DDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555 556678899999999999 567789999999999985 45 556999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHH
Q 031176 112 QCLEIAPDWRQALGLKK 128 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~ 128 (164)
++++++|++-+.....-
T Consensus 702 ~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 702 LVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHhcCCCCchhhhhhh
Confidence 99999999976654333
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=97.92 E-value=0.00014 Score=66.63 Aligned_cols=100 Identities=9% Similarity=-0.010 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHh------cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 031176 25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVH------SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGY 97 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~------S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~ 97 (164)
.+++.+..+...|++. ..++..+.+.+.+|+++.. +...++..+|+..++..+.. +| +..++++.+|..+
T Consensus 272 ~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP-~~~~a~~~lg~~~ 348 (553)
T PRK12370 272 YTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DH-NNPQALGLLGLIN 348 (553)
T ss_pred cCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHH
Confidence 4566777777777777 5666678888888887652 23456789999999999986 45 4458999999999
Q ss_pred HhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176 98 YRTGEYAKSRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 98 ~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
...|+|++|..+++++|+++|+|.++....
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 378 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPISADIKYYY 378 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999999999999875544
No 35
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=1.8e-05 Score=54.46 Aligned_cols=64 Identities=23% Similarity=0.381 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQ-QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~-~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
.++++.|+.+++.++.. +|.+ ..+++|+||.+|+++|+|++|..+++. ++.+|.|.+..-|.-.
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 46789999999999986 3422 557889999999999999999999999 9999998777665543
No 36
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.88 E-value=0.00017 Score=66.38 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=62.1
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++...++.+++|+++. ..++..+++..++..+.. +| ...+++|+++..|+.+|+|++|+.+++++|+++|+|..
T Consensus 361 ~P~~~~~~~~la~~~~---~~g~~~eA~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 361 DPRVTQSYIKRASMNL---ELGDPDKAEEDFDKALKL--NS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred CCCcHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 4446778888888888 566788899999988875 34 44589999999999999999999999999999998866
Q ss_pred HH
Q 031176 123 AL 124 (164)
Q Consensus 123 a~ 124 (164)
+.
T Consensus 435 ~~ 436 (615)
T TIGR00990 435 SH 436 (615)
T ss_pred HH
Confidence 54
No 37
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.88 E-value=3e-05 Score=43.83 Aligned_cols=33 Identities=30% Similarity=0.617 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
|++|.+|.+++++|++++|+++++++++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 689999999999999999999999999999974
No 38
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.88 E-value=0.00028 Score=56.43 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh--------cchHHHHHHHHHHHhhCC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT--------GEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl--------~~Y~~A~~~~~~lL~~eP 118 (164)
.++.+.+|.++. ..++..+|+..++.+++...+.....+.+|.++.++++. +++++|++.++.+++..|
T Consensus 70 ~~a~~~la~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 70 EQAQLDLAYAYY---KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 367899999998 678899999999999986333344456899999999987 899999999999999999
Q ss_pred CcHHHHHHH
Q 031176 119 DWRQALGLK 127 (164)
Q Consensus 119 ~n~Qa~~L~ 127 (164)
++..+....
T Consensus 147 ~~~~~~~a~ 155 (235)
T TIGR03302 147 NSEYAPDAK 155 (235)
T ss_pred CChhHHHHH
Confidence 998664443
No 39
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.88 E-value=0.00012 Score=61.83 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
+++.|-++.++. ..++...|+..++.++....+.+...|++|.++..+.++|++++|+++++.+++..|+...+..=
T Consensus 180 ~~A~y~LG~~y~---~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 180 PNANYWLGQLNY---NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 689999999999 77889999999999997644445678999999999999999999999999999999999988766
Q ss_pred HHHH
Q 031176 127 KKTV 130 (164)
Q Consensus 127 ~~~I 130 (164)
++.+
T Consensus 257 ~~rL 260 (263)
T PRK10803 257 QKRL 260 (263)
T ss_pred HHHH
Confidence 5554
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.87 E-value=0.00018 Score=60.85 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.+++.++++..+. ..++...|++.++..+.. +| +....++++++.++..|+|++|.+.++++++.+|++.
T Consensus 97 ~~~a~~~lg~~~~---~~g~~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 97 MADAYNYLGIYLT---QAGNFDAAYEAFDSVLEL--DP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4445555555444 344444555555555443 22 2234555555555555555555555555555555554
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.87 E-value=0.00044 Score=52.57 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
.....++++.++. ..++..+++..++..+.. +| ...+.++.+|..+++.|+|++|.++++++++..|.+.....
T Consensus 134 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 134 PARSLENAGLCAL---KAGDFDKAEKYLTRALQI--DP-QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred chHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4567888888888 667788999999998885 34 34578999999999999999999999999999998877765
Q ss_pred HHHHHH
Q 031176 126 LKKTVE 131 (164)
Q Consensus 126 L~~~Ie 131 (164)
+.-.+.
T Consensus 208 ~~~~~~ 213 (234)
T TIGR02521 208 LGIRIA 213 (234)
T ss_pred HHHHHH
Confidence 444443
No 42
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.83 E-value=6.1e-05 Score=46.36 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
+.++.||..|.++|++++|++.++++|+.+|+|..+....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 5789999999999999999999999999999999887543
No 43
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.82 E-value=0.00013 Score=56.82 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=66.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
..+++..|+-|-..+ +.+++.+|++.|+.|..+.-.++-....-..|+-+||+.++|+.|+..+++++++.|.++++
T Consensus 7 ~~~~~~ly~~a~~~l---~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 7 DKSPQELYQEAQEAL---QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 347888999999999 77899999999999877643334456788999999999999999999999999999999875
Q ss_pred H
Q 031176 124 L 124 (164)
Q Consensus 124 ~ 124 (164)
-
T Consensus 84 d 84 (142)
T PF13512_consen 84 D 84 (142)
T ss_pred c
Confidence 3
No 44
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.80 E-value=3.7e-05 Score=44.10 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+.||.+|..|.++|+|++|.++++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 468999999999999999999999999999965
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.79 E-value=0.00046 Score=58.31 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176 28 DIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS 106 (164)
Q Consensus 28 ~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A 106 (164)
..|.++.+...+. .+.+..++..|+.+..+. ..++..+|+..++..+.. +| +..+.+++++..+.++|+|++|
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~---~~g~~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYD---SLGLRALARNDFSQALAL--RP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 3566666666544 333445788999999888 567788999999999986 44 5569999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHH
Q 031176 107 RQILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 107 ~~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
...++++|+++|++..+...+-.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999877544433
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.76 E-value=0.00032 Score=66.62 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=79.1
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.++..+++. ...+.+++..+.+|..+. ..++..+|++.|+..+.. +| +..+.+|.+|..+.++++|++|...+
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~---~~g~~~~A~~~l~~al~l--~P-d~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQ---ARGWPRAAENELKKAEVL--EP-RNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhh--CC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344455554 445557889999999888 566789999999998885 45 44579999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHh
Q 031176 111 EQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
+.+++.+|+|..++.|.+.-+-
T Consensus 451 ~~ll~~~Pd~~~~~~~~~~~~~ 472 (765)
T PRK10049 451 DDVVAREPQDPGVQRLARARDV 472 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 47
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.75 E-value=0.00094 Score=60.58 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=58.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch--HHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ--REKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~--rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
+..++..+|++.+|. ..+++++|+..++..+.. +|.+. +-+||++|.+|.++|++++|+.+++++|++
T Consensus 72 P~~a~a~~NLG~AL~---~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLF---SKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446899999999999 788999999999999986 35332 235999999999999999999999999987
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.00051 Score=52.81 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
.....++.+.++. ..++..+|+..++..+....++......++.+|+.+.+.|+|++|+.+++++|+++|.+..+..
T Consensus 34 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 34 EAFTYYRDGMSAQ---SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 3455566666666 4567889999999988753333334468999999999999999999999999999999987655
Q ss_pred HHHHHHh
Q 031176 126 LKKTVED 132 (164)
Q Consensus 126 L~~~Ie~ 132 (164)
..-.|..
T Consensus 111 ~la~i~~ 117 (168)
T CHL00033 111 NMAVICH 117 (168)
T ss_pred HHHHHHH
Confidence 4444444
No 49
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.68 E-value=0.0005 Score=51.76 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC---cHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD---WRQA 123 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~---n~Qa 123 (164)
++..|+.||++= ..++-++||.+.+..+...-+++..++++..||-.+-.+|+|++|...++..++..|+ +...
T Consensus 1 ~~~~~~~A~a~d---~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 1 PRALYELAWAHD---SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred CchHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 357899999998 7788899999999998864455677899999999999999999999999999999999 6666
Q ss_pred HHHHHHH
Q 031176 124 LGLKKTV 130 (164)
Q Consensus 124 ~~L~~~I 130 (164)
..+..+.
T Consensus 78 ~~f~Al~ 84 (120)
T PF12688_consen 78 RVFLALA 84 (120)
T ss_pred HHHHHHH
Confidence 6554443
No 50
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.65 E-value=0.00069 Score=61.46 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=69.1
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
....|.+. ..++.+.++.+.+|+.+. ..++..+|+++++..+.. +| ...+.+++++..+.+.|+|++|..+++
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 144 AQKSYEQALAIDPRSLYAKLGLAQLAL---AENRFDEARALIDEVLTA--DP-GNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444 445557788999999998 566888899999998875 34 456899999999999999999999999
Q ss_pred HHHhhCCCcHHHHH
Q 031176 112 QCLEIAPDWRQALG 125 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~ 125 (164)
++++.+|++.++..
T Consensus 218 ~a~~~~p~~~~~~~ 231 (899)
T TIGR02917 218 KAIALRPNNPAVLL 231 (899)
T ss_pred HHHhhCCCCHHHHH
Confidence 99999999876543
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.65 E-value=0.0006 Score=61.89 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=59.2
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|.+. ...++.+.+..+++|.+.+..+ .+++++++..+.. .| +..+.++.++..++++|++++|.+++++
T Consensus 790 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKL--AP-NIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhh--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444 3445566777777888774443 4588888887775 23 3457788888888888888888888888
Q ss_pred HHhhCCCcHHHHHH
Q 031176 113 CLEIAPDWRQALGL 126 (164)
Q Consensus 113 lL~~eP~n~Qa~~L 126 (164)
+++..|.|..+...
T Consensus 863 a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 863 AVNIAPEAAAIRYH 876 (899)
T ss_pred HHhhCCCChHHHHH
Confidence 88888887665543
No 52
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.64 E-value=0.00066 Score=62.47 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=68.3
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+...|.+. ..++..+++.++++.++. ..++..+|+..++..+.. +| .....+++||..++++|+|++|+.+++
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~kal~l--~P-~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHF---IKGEFAQAGKDYQKSIDL--DP-DFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--Cc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444444 445557788888888888 567788999999998885 34 445788899999999999999999999
Q ss_pred HHHhhCCCcHHHHHHH
Q 031176 112 QCLEIAPDWRQALGLK 127 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~ 127 (164)
++++..|++..+....
T Consensus 458 ~al~~~P~~~~~~~~l 473 (615)
T TIGR00990 458 RCKKNFPEAPDVYNYY 473 (615)
T ss_pred HHHHhCCCChHHHHHH
Confidence 9999999987654433
No 53
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.58 E-value=0.0003 Score=47.22 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCC-CCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSP-PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~-~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
...+.+++|..+. ..++..+|+..+++.+.. .++ .+..-.+++.+|..|+++|+|++|+++.++++++
T Consensus 4 ~a~~~~~la~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYR---ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567889999999 777888888888887642 111 1234679999999999999999999999999986
No 54
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.00062 Score=59.37 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+.-|-.+. ..++..+|++++++.+.. +| ...++++++|.+|.++|+|++|+.+++++|+++|++.++.-.+-.+
T Consensus 6 ~~~a~~a~---~~~~~~~Ai~~~~~Al~~--~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 6 EDKAKEAF---VDDDFALAVDLYTQAIDL--DP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 34455566 567889999999999986 44 4569999999999999999999999999999999999887666555
Q ss_pred HhH
Q 031176 131 EDR 133 (164)
Q Consensus 131 e~~ 133 (164)
--.
T Consensus 80 ~~~ 82 (356)
T PLN03088 80 CMK 82 (356)
T ss_pred HHH
Confidence 433
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.47 E-value=0.0014 Score=62.22 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|++. ..++.+++..+.++.+++ ..++..+|+..|++++.. .|.+. + ++.+|..+.+.|++++|+.++++
T Consensus 69 ~~~~~~al~~~P~~~~a~~~la~~l~---~~g~~~eA~~~l~~~l~~--~P~~~-~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 69 LTLWQKALSLEPQNDDYQRGLILTLA---DAGQYDEALVKAKQLVSG--APDKA-N-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CCCCH-H-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445544 445667888889998888 667788999999999986 45444 5 99999999999999999999999
Q ss_pred HHhhCCCcHHHHHHH
Q 031176 113 CLEIAPDWRQALGLK 127 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~ 127 (164)
+++..|+|.++....
T Consensus 142 al~~~P~~~~~~~~l 156 (765)
T PRK10049 142 ALPRAPQTQQYPTEY 156 (765)
T ss_pred HHHhCCCCHHHHHHH
Confidence 999999998875543
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.45 E-value=0.0016 Score=61.12 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=52.9
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhH-HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAED-VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d-~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
..++..|.+. ..++.+++..+++|..+....+..+ ..+|+..++..+.. +| +..+.++.+|..+.+.|+|++|+.
T Consensus 229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P-~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS-DNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555 3344456666666666664443322 22466666666653 23 334666666666666666666666
Q ss_pred HHHHHHhhCCCcHHHHHHH
Q 031176 109 ILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa~~L~ 127 (164)
+++++++++|+|.++....
T Consensus 306 ~l~~al~l~P~~~~a~~~L 324 (656)
T PRK15174 306 LLQQSLATHPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 6666666666666554443
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.44 E-value=0.0021 Score=54.61 Aligned_cols=76 Identities=24% Similarity=0.164 Sum_probs=54.4
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++.+.++.+.++..+. ..++..+|+++++..+.. +|....+.++.|+.+|++.|++++|..+++++++..|++..
T Consensus 210 ~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 210 DPQCVRASILLGDLAL---AQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred CcCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 3445667777777777 455677788888887764 34444566778888888888888888888888888887654
Q ss_pred H
Q 031176 123 A 123 (164)
Q Consensus 123 a 123 (164)
+
T Consensus 285 ~ 285 (389)
T PRK11788 285 L 285 (389)
T ss_pred H
Confidence 4
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.40 E-value=0.0033 Score=58.91 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=63.0
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
+..|.+. ..++.+..+.+++++.+. ..++..+|+..++..+.. +| +..+.+++|+..+.+.|+|++|+..+++
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~---~~g~~~eA~~~l~~al~l--~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALI---RTGQNEKAIPLLQQSLAT--HP-DLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444 445557788888888888 556777888888887775 34 4457888888888888888888888888
Q ss_pred HHhhCCCcHHHH
Q 031176 113 CLEIAPDWRQAL 124 (164)
Q Consensus 113 lL~~eP~n~Qa~ 124 (164)
+++.+|++..+.
T Consensus 344 al~~~P~~~~~~ 355 (656)
T PRK15174 344 LAREKGVTSKWN 355 (656)
T ss_pred HHHhCccchHHH
Confidence 888888876544
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.39 E-value=0.0032 Score=48.72 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc--------------hHHHHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE--------------YAKSRQILEQ 112 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~--------------Y~~A~~~~~~ 112 (164)
....+++|.++. ..++..+|++.++..+.. .| .....++.++..+.++++ |++|++++++
T Consensus 72 ~~~~~~la~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 72 SYILYNMGIIYA---SNGEHDKALEYYHQALEL--NP-KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 467888888888 567788999999998885 34 456889999999999998 7899999999
Q ss_pred HHhhCCCc
Q 031176 113 CLEIAPDW 120 (164)
Q Consensus 113 lL~~eP~n 120 (164)
+++.+|+|
T Consensus 146 a~~~~p~~ 153 (172)
T PRK02603 146 AIRLAPNN 153 (172)
T ss_pred HHhhCchh
Confidence 99999998
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.38 E-value=0.00067 Score=56.02 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
++.....+++.+.+ .++..++.++|+.+... ...+....+|+.+|..+.+.|++++|+++++++|+.+|+|+++..
T Consensus 109 ~~~~l~~~l~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~ 184 (280)
T PF13429_consen 109 DPRYLLSALQLYYR---LGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN 184 (280)
T ss_dssp ---------H-HHH---TT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred ccchhhHHHHHHHH---HhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34555566676664 45566677777765543 223355688889999999999999999999999999999998764
No 61
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.37 E-value=0.00041 Score=36.52 Aligned_cols=33 Identities=33% Similarity=0.645 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
++++.+|..++.+++|++|..+++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999999974
No 62
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.37 E-value=0.0008 Score=43.97 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
-+.|+.+|..+++.|+|++|+.+++++++++|+|..+.--.-.+-....
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 3789999999999999999999999999999999998777766655554
No 63
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.0054 Score=48.53 Aligned_cols=118 Identities=11% Similarity=0.039 Sum_probs=84.8
Q ss_pred hhcccccCCCCCCC---CC-HHHHHHH----------------HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHH
Q 031176 11 SIGSFFTGGDQIPW---CD-RDIIAGC----------------EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRG 69 (164)
Q Consensus 11 ~~~~~~~~~~~lp~---~~-~~~l~~~----------------e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~g 69 (164)
.+.+||.+|-.|.- .+ ++++..+ ++.|+-. .-++. ...+-|.+++++. ..+++.+|
T Consensus 12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q-~~g~~~~A 88 (157)
T PRK15363 12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQ-AQKHWGEA 88 (157)
T ss_pred HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHH-HHhhHHHH
Confidence 56678887765544 56 6666653 2222222 22333 3444445555543 58899999
Q ss_pred HHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 70 IAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 70 i~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
|......+.- +| +.-..+||+|+++.++|+.+.|+++.+.++..--++++...|++..+.-.
T Consensus 89 I~aY~~A~~L--~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 89 IYAYGRAAQI--KI-DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHHHHHHHhc--CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 9999987775 35 34489999999999999999999999999999989999999998877653
No 64
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00053 Score=44.50 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
|.+|..+++.|+|++|+++++++++.+|+|.++.-+.-.+.-...
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g 45 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG 45 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999999988877766443
No 65
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0033 Score=54.34 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
+.++--+=|-|-++. +-+++..||+=.+..+.. || +-...|-=|.++|+-+|+|++|.+++..+|.++|+|.-+
T Consensus 112 P~nAVyycNRAAAy~---~Lg~~~~AVkDce~Al~i--Dp-~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 112 PTNAVYYCNRAAAYS---KLGEYEDAVKDCESALSI--DP-HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred CCcchHHHHHHHHHH---HhcchHHHHHHHHHHHhc--Ch-HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHH
Confidence 334555556677777 788999999999998986 44 666888899999999999999999999999999999988
Q ss_pred HHHHHHHHhHhh
Q 031176 124 LGLKKTVEDRIA 135 (164)
Q Consensus 124 ~~L~~~Ie~~~~ 135 (164)
++=++..+.+..
T Consensus 186 K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 186 KSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHHHhc
Confidence 887777777654
No 66
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.26 E-value=0.0054 Score=49.12 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc----------
Q 031176 33 CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE---------- 102 (164)
Q Consensus 33 ~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~---------- 102 (164)
|++...+...++-.+++.|.+|++.. ..++...|+..++.++...-+.+...+++|.++++++++..
T Consensus 28 f~~l~~~~P~s~~a~~A~l~la~a~y---~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~ 104 (203)
T PF13525_consen 28 FEKLIDRYPNSPYAPQAQLMLAYAYY---KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQT 104 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---H
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChH
Confidence 33333333444557899999999999 66789999999999888644445667899999999998753
Q ss_pred -hHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 103 -YAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 103 -Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
..+|...++.+++.-|+.+-+..-++.|.
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAEEAKKRLA 134 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence 34899999999999999986665555443
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.26 E-value=0.0065 Score=51.59 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
..+..+...++..+. ..++..+|++.++.++.....+.. ...+++.++..+++.+++++|.++++++++..|++.
T Consensus 138 ~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 138 DFAEGALQQLLEIYQ---QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred cchHHHHHHHHHHHH---HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 335566666676666 456677777777776664211111 122444566677777777777777777777777766
Q ss_pred HHHHHH
Q 031176 122 QALGLK 127 (164)
Q Consensus 122 Qa~~L~ 127 (164)
++..+.
T Consensus 215 ~~~~~l 220 (389)
T PRK11788 215 RASILL 220 (389)
T ss_pred HHHHHH
Confidence 554443
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.24 E-value=0.0025 Score=60.59 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
+++.+++|..+. ..+..++|..+|+.++.. .++...++.++|.+..+++.+++|+..++++|+.+|+|..+..+
T Consensus 86 ~~~~~~La~i~~---~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 86 ELFQVLVARALE---AAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HHHHHHHHHHHH---HcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 556666666666 455555566666665553 23444666666666666666666666666666666666555544
Q ss_pred HH
Q 031176 127 KK 128 (164)
Q Consensus 127 ~~ 128 (164)
+-
T Consensus 160 ~a 161 (694)
T PRK15179 160 EA 161 (694)
T ss_pred HH
Confidence 43
No 69
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.23 E-value=0.0017 Score=54.92 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
++...++-+...+ +.++..+|+..|+.+.+.+-..+-.+.....|+-+|||.++|+.|+.++++.+++.|.++.+
T Consensus 33 p~~~LY~~g~~~L---~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTEL---QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 5677777788888 88999999999999888653334558999999999999999999999999999999998854
No 70
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.22 E-value=0.0043 Score=61.19 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
+.+..+++|.++. +.++..+|+..++..+.. +| +..+.++.|+..+...|++++|+.+++++|+++|+|.++.
T Consensus 608 ~~~a~~~LA~~l~---~lG~~deA~~~l~~AL~l--~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 608 SANAYVARATIYR---QRHNVPAAVSDLRAALEL--EP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3666667776666 556666777777776664 33 3336777777777777777777777777777777776555
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0022 Score=53.96 Aligned_cols=90 Identities=14% Similarity=0.229 Sum_probs=77.8
Q ss_pred HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
....++.|+.. +.++.+.+..-||.|=|. ..+...+|...|+..+.. -.-..+.+.+=++.++.+|.|+.+.|+.
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC---~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLC---AQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred hhhHHHHHHHHHhcCCCccchhhhhhHHHH---hCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 45568888888 667778999999999999 566889999999998886 2335677999999999999999999999
Q ss_pred HHHHHHhhCCCcHHH
Q 031176 109 ILEQCLEIAPDWRQA 123 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa 123 (164)
+.++.|+++|++.-+
T Consensus 161 ~l~raL~~dp~~~~~ 175 (250)
T COG3063 161 YLKRALELDPQFPPA 175 (250)
T ss_pred HHHHHHHhCcCCChH
Confidence 999999999998754
No 72
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.22 E-value=0.0044 Score=46.68 Aligned_cols=80 Identities=23% Similarity=0.169 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
...+.|.+|-.++ ..++..+|++.|+.++....++.-..-+.+.||..++..|+|++|+..++. ..-.|-...+..
T Consensus 47 a~~A~l~lA~~~~---~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~ 122 (145)
T PF09976_consen 47 AALAALQLAKAAY---EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAE 122 (145)
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHH
Confidence 5788999999999 778999999999999987434444456788899999999999999999876 222333334444
Q ss_pred HHHH
Q 031176 126 LKKT 129 (164)
Q Consensus 126 L~~~ 129 (164)
|+-.
T Consensus 123 ~~Gd 126 (145)
T PF09976_consen 123 LLGD 126 (145)
T ss_pred HHHH
Confidence 4333
No 73
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.20 E-value=0.00061 Score=40.30 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHH--hhCCCc
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCL--EIAPDW 120 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL--~~eP~n 120 (164)
+|.+||..|.++|+|++|..+++++| ..+|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 57899999999999999999999955 555554
No 74
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.0064 Score=46.68 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-------hhcchH-------HHHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYY-------RTGEYA-------KSRQILEQ 112 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~-------kl~~Y~-------~A~~~~~~ 112 (164)
+.+.+++|.++. ..++..+|+..++..+.. ++...+.++.++..++ ++|+|+ +|+.++++
T Consensus 72 ~~~~~~lg~~~~---~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 72 SYILYNIGLIHT---SNGEHTKALEYYFQALER---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 458889999888 556778899999998885 3344588999999999 777776 66666778
Q ss_pred HHhhCCCcHHHH
Q 031176 113 CLEIAPDWRQAL 124 (164)
Q Consensus 113 lL~~eP~n~Qa~ 124 (164)
++..+|++....
T Consensus 146 a~~~~p~~~~~~ 157 (168)
T CHL00033 146 AIALAPGNYIEA 157 (168)
T ss_pred HHHhCcccHHHH
Confidence 899999876443
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.14 E-value=0.0031 Score=60.03 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=72.6
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
+..+... +-.+.+.++..++|-.|. +.+.+++|....+.++.. +| +..+.++.+|.+.-++|+|++|..++++
T Consensus 106 ~~~l~~~~~~~Pd~~~a~~~~a~~L~---~~~~~eeA~~~~~~~l~~--~p-~~~~~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 106 LAVWRGIHQRFPDSSEAFILMLRGVK---RQQGIEAGRAEIELYFSG--GS-SSAREILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHH---HhccHHHHHHHHHHHhhc--CC-CCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3334444 446678999999999999 888999999999999985 44 5669999999999999999999999999
Q ss_pred HHhhCCCcHHHHH
Q 031176 113 CLEIAPDWRQALG 125 (164)
Q Consensus 113 lL~~eP~n~Qa~~ 125 (164)
+|...|++.++.-
T Consensus 180 ~~~~~p~~~~~~~ 192 (694)
T PRK15179 180 LSRQHPEFENGYV 192 (694)
T ss_pred HHhcCCCcHHHHH
Confidence 9999998876643
No 76
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.01 E-value=0.0073 Score=53.08 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
++..+++..++..++. .| +..+.++.+|-.+++.++|++|+++.+.+++.+|++.....|-...+..
T Consensus 308 ~~~~~al~~~e~~lk~--~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQ--HG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL 374 (398)
T ss_pred CChHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 5667788888888875 34 4558999999999999999999999999999999999988777776654
No 77
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0074 Score=54.00 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH---
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA--- 123 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa--- 123 (164)
..+..|+|.|++ +-++...||+.....|.- +| ...-+||=-+-++.-+++|+.|+..++++++++|+|.-+
T Consensus 257 ~~~~lNlA~c~l---Kl~~~~~Ai~~c~kvLe~--~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 257 LACHLNLAACYL---KLKEYKEAIESCNKVLEL--DP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHhhHHHHHHH---hhhhHHHHHHHHHHHHhc--CC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 456678999999 566777999999998885 34 455899999999999999999999999999999999744
Q ss_pred -HHHHHHHHhHhhh
Q 031176 124 -LGLKKTVEDRIAK 136 (164)
Q Consensus 124 -~~L~~~Ie~~~~~ 136 (164)
..|++.+.+...+
T Consensus 331 l~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 331 LIKLKQKIREYEEK 344 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 4555555554443
No 78
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.94 E-value=0.0088 Score=59.33 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=56.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 52 RLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
..+.+++ ..++..+|+..|++.+.. +| +..+.++.|+..|++.|+|++|+.+++++|+.+|++...
T Consensus 274 ~~G~~~~---~~g~~~~A~~~l~~aL~~--~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 274 AQGLAAV---DSGQGGKAIPELQQAVRA--NP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 3466676 567788999999999986 34 446999999999999999999999999999999998643
No 79
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.0019 Score=60.58 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHhc--CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 47 SESIMRLSWALVHS--RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 47 ~~~~F~yA~aLi~S--~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
-+..|.|||+|..+ ...++.++|..-++..+.- +| +.=.+||-|++.|.|++.|+.|.-++++++++.|.|.+-+
T Consensus 450 ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 450 LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence 35579999999976 3456888999999998885 44 4558999999999999999999999999999999999755
Q ss_pred HH
Q 031176 125 GL 126 (164)
Q Consensus 125 ~L 126 (164)
-=
T Consensus 527 ~~ 528 (638)
T KOG1126|consen 527 CH 528 (638)
T ss_pred hh
Confidence 43
No 80
>PRK11906 transcriptional regulator; Provisional
Probab=96.81 E-value=0.026 Score=51.41 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHH
Q 031176 27 RDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAK 105 (164)
Q Consensus 27 ~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~ 105 (164)
+.+....-+.-.+. .-|..++++.|..+.++..+. +...|+.+|+..+.- .++.-+.+||.|+.+.-.|+.++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~---~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG---QAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc---chhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHH
Confidence 34444444444444 567788999999999998444 488999999997775 34667999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 106 SRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 106 A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
|++.++++|+++|.-.-+--+|.-|+
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHH
Confidence 99999999999999999988888883
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.79 E-value=0.012 Score=50.13 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=38.5
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
++++.+. ..++++.-+++--||.-+.... +.++.+..+++++..+ ......-+.-+|+++..+|+|++|.+.++.
T Consensus 151 ~k~l~~~~~~~eD~~l~qLa~awv~l~~g~-e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQIDEDSILTQLAEAWVNLATGG-EKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444443 2233344444444444443332 3455555555554332 111224445555555555555555555555
Q ss_pred HHhhCCCcHH
Q 031176 113 CLEIAPDWRQ 122 (164)
Q Consensus 113 lL~~eP~n~Q 122 (164)
+|+.+|.|+.
T Consensus 227 al~~~~~~~d 236 (290)
T PF04733_consen 227 ALEKDPNDPD 236 (290)
T ss_dssp HCCC-CCHHH
T ss_pred HHHhccCCHH
Confidence 5555555544
No 82
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.044 Score=45.52 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc---------------c---hHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG---------------E---YAKSR 107 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~---------------~---Y~~A~ 107 (164)
..++.+.+|++.. +.++...|+..++..++...+.+...+++|.++++++.++ | -.+|.
T Consensus 68 a~~a~l~la~ayy---~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 68 SQQVQLDLIYAYY---KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 4566799999999 6678999999999999976555677789999999987775 1 24677
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHH
Q 031176 108 QILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+.++.+++.-|+-+=+..-+..|
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHH
Confidence 99999999999977555554433
No 83
>PLN02789 farnesyltranstransferase
Probab=96.75 E-value=0.017 Score=49.98 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=65.4
Q ss_pred cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 42 DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 42 ~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.++.+.++-..-.|.+-+-. .....+.+++++..+.. +| ..-.+|++.+....++++|++|+++++++|+.+|.|.
T Consensus 101 ~npknyqaW~~R~~~l~~l~-~~~~~~el~~~~kal~~--dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 101 DNPKNYQIWHHRRWLAEKLG-PDAANKELEFTRKILSL--DA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HCCcchHHhHHHHHHHHHcC-chhhHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 34556677777788876443 22346678899888885 34 5569999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 031176 122 QALGLKKTV 130 (164)
Q Consensus 122 Qa~~L~~~I 130 (164)
.|-.-+-.+
T Consensus 177 sAW~~R~~v 185 (320)
T PLN02789 177 SAWNQRYFV 185 (320)
T ss_pred hHHHHHHHH
Confidence 765544443
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.71 E-value=0.0076 Score=58.34 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=69.1
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
-+...+..++.|-+|+ +.+...+|+.+|-.++.. ++.+.-..||-+|..|..+++|++|..+++.+|.++|+|-.
T Consensus 410 ~~d~~dL~~d~a~al~---~~~~~~~Al~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALT---NIGKYKEALRLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred hhhhHHHHHHHHHHHH---hcccHHHHHHHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 3456899999999999 999999999999998875 45556789999999999999999999999999999999986
Q ss_pred HHH
Q 031176 123 ALG 125 (164)
Q Consensus 123 a~~ 125 (164)
++-
T Consensus 485 ~Ri 487 (895)
T KOG2076|consen 485 ARI 487 (895)
T ss_pred hhh
Confidence 653
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.66 E-value=0.0099 Score=50.74 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=66.9
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch-HHHHHHHHHHHhhCCCcHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY-AKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y-~~A~~~~~~lL~~eP~n~Q 122 (164)
.+++.+....|++.+ ..+++.+|.++|++.+.. +| ...|.+.++++...-+|+- +.+.+|+.++-+..|+++-
T Consensus 198 ~~t~~~lng~A~~~l---~~~~~~eAe~~L~~al~~--~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHL---QLGHYEEAEELLEEALEK--DP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp --SHHHHHHHHHHHH---HCT-HHHHHHHHHHHCCC---C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--cc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 457888889999999 888999999999998875 45 4569999999999999988 8899999999999999999
Q ss_pred HHHHHHH
Q 031176 123 ALGLKKT 129 (164)
Q Consensus 123 a~~L~~~ 129 (164)
...+.+.
T Consensus 272 ~~~~~~~ 278 (290)
T PF04733_consen 272 VKDLAEK 278 (290)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 86
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.64 E-value=0.029 Score=49.37 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchH-HHHHHHHHHHHhhcchHHHHHHHH--HHHhhCCCcHHHHHHHHHHHh
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQR-EKLYLLAVGYYRTGEYAKSRQILE--QCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~r-d~lY~LAlg~~kl~~Y~~A~~~~~--~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
++++....++.++..++. +|.+.. ..+..|+..+++.|+|++|++|.+ ..++..|++..+..|-+..+.
T Consensus 311 ~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred CCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 356677888888887875 343332 456688999999999999999999 799999999988877766664
No 87
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.041 Score=46.85 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.-++++.|=|.-++. ..++.+.+...+....+...+.+.-.|.++=|++.-.++|+-++|+..++++.+.-|+.+.+
T Consensus 175 ~~~~nA~yWLGe~~y---~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 175 TYTPNAYYWLGESLY---AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred cccchhHHHHHHHHH---hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 336778888888877 77777888888877777654444555888888888888888888888888888888888877
Q ss_pred HHHHHHH
Q 031176 124 LGLKKTV 130 (164)
Q Consensus 124 ~~L~~~I 130 (164)
+.=+..+
T Consensus 252 ~~Ak~~~ 258 (262)
T COG1729 252 KLAKVAL 258 (262)
T ss_pred HHHHHHH
Confidence 7655554
No 88
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.61 E-value=0.013 Score=58.15 Aligned_cols=77 Identities=17% Similarity=0.058 Sum_probs=64.7
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
.+.++...+.+|..+. ..++..+|++.++..+.. +| +..+.++.|+..+.+.|+|++|+.+++.+++..|++..
T Consensus 599 ~p~~~~~~~~La~~~~---~~g~~~~A~~~y~~al~~--~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQ---QRGDYAAARAAYQRVLTR--EP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred CCCCchHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 3456778888898888 778899999999998885 45 44599999999999999999999999999999998876
Q ss_pred HHH
Q 031176 123 ALG 125 (164)
Q Consensus 123 a~~ 125 (164)
+..
T Consensus 673 ~~~ 675 (1157)
T PRK11447 673 TQR 675 (1157)
T ss_pred HHH
Confidence 544
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.045 Score=50.59 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
-.+-.+.-+.... ..+|...||..+.+.+.. +| +..-.+-+.|.+|.++++|.+|++.|+.+++++|++..+-.
T Consensus 357 ~A~e~r~kGne~F---k~gdy~~Av~~YteAIkr--~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 357 KAEEEREKGNEAF---KKGDYPEAVKHYTEAIKR--DP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred HHHHHHHHHHHHH---hccCHHHHHHHHHHHHhc--CC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 3555555566766 677899999999999987 34 55578889999999999999999999999999999988776
Q ss_pred HHHHHHhHhhh
Q 031176 126 LKKTVEDRIAK 136 (164)
Q Consensus 126 L~~~Ie~~~~~ 136 (164)
=|-.+...|++
T Consensus 431 RKg~al~~mk~ 441 (539)
T KOG0548|consen 431 RKGAALRAMKE 441 (539)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.46 E-value=0.064 Score=49.55 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=74.7
Q ss_pred hhhhhhhhcccccCCCCCCC-----CCHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 031176 5 ISKFFDSIGSFFTGGDQIPW-----CDRDIIAGCEREVAEA--NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASL 77 (164)
Q Consensus 5 ~~~~~~~~~~~~~~~~~lp~-----~~~~~l~~~e~~y~~~--~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll 77 (164)
...+.+.+..+|+..+...+ ++-++....=..|-+. ..|-| +.|.---.|...+ ....--.++++.++
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~--~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP--EKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh--hHHHHHHHHHHHHH
Confidence 34567777778877655444 3334444444455554 55543 4455445555433 22333344444544
Q ss_pred hCC---CC--------CCchH---HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 78 ANS---SP--------PLQQR---EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 78 ~~~---~~--------~~~~r---d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
... +. ...+. =++||||..|..+|+|++|++|++.++++.|.....--+|-.|-+
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK 239 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK 239 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 321 00 01122 267999999999999999999999999999998876666665533
No 91
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.44 E-value=0.064 Score=49.14 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=79.7
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..+.+. ..++.++-...+||-+|++-.+++ +||.+|...+.. +|. .-+-|+|||-+|-++|+-.+|....-..
T Consensus 361 e~~~kal~l~P~~~~l~~~~a~all~~g~~~---eai~~L~~~~~~--~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQ---EAIRILNRYLFN--DPE-DPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHhcCChH---HHHHHHHHHhhc--CCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 334444 445556899999999999666665 999999998886 454 4499999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHhHhhhh
Q 031176 114 LEIAPDWRQALGLKKTVEDRIAKD 137 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~Ie~~~~~d 137 (164)
+...-..+||+.....-.++++.+
T Consensus 435 ~~~~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 435 YALAGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred HHhCCCHHHHHHHHHHHHHhccCC
Confidence 999999999998888777776543
No 92
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.43 E-value=0.0065 Score=35.47 Aligned_cols=29 Identities=38% Similarity=0.579 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.++..||..|...|+|++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 58899999999999999999999999875
No 93
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=96.42 E-value=0.011 Score=37.16 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
|.||-+|+++||++.|++.++.++. +++.+|-.+=++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~~q~~eA~~LL 41 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDEAQRQEARALL 41 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 6799999999999999999999994 67776655544444
No 94
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.39 E-value=0.034 Score=41.79 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHHH-h---cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 33 CEREVAEA-N---DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 33 ~e~~y~~~-~---~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
....|++. . .+....++.++++.++- +-+...+++.+|++.+....+++......+++|++.+.+|++++|+.
T Consensus 20 Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 20 AIPLYRRALAAGLSGADRRRALIQLASTLR---NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHH
Confidence 34456666 3 23445789999999999 88999999999999988633333355777999999999999999999
Q ss_pred HHHHHHh
Q 031176 109 ILEQCLE 115 (164)
Q Consensus 109 ~~~~lL~ 115 (164)
-+-.+|.
T Consensus 97 ~~l~~la 103 (120)
T PF12688_consen 97 WLLEALA 103 (120)
T ss_pred HHHHHHH
Confidence 9877775
No 95
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.014 Score=57.07 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
..++..|+|+|++ ..+.+..||++.+..+++ -.+.++++.+-|||-+||+-+.|.+|.++...++...|.|.+.+
T Consensus 679 ~~dv~lNlah~~~---e~~qy~~AIqmYe~~lkk-f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 679 FEDVWLNLAHCYV---EQGQYRLAIQMYENCLKK-FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred CCceeeeHHHHHH---HHHHHHHHHHHHHHHHHH-hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHH
Confidence 4578899999999 889999999999999997 34678899999999999999999999999999999999999754
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.30 E-value=0.019 Score=48.27 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
...+.+++.+. ..++..+|+..++..+.. .|. ...+++.+|..++..|++++|+.+++..+...|.
T Consensus 115 ~~~~~~a~~~~---~~G~~~~A~~~~~~al~~--~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 115 YLLGMLAFGLE---EAGQYDRAEEAARRALEL--NPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 33444445554 344455566666555553 222 2345555555666666666666666666655553
No 97
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.28 E-value=0.027 Score=49.57 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHH-hcCCCch--HHHHHHHHHHHhcCChhHHHHHHHHHH--HHhhCCCCCCchHHHHHHHHHHHHh
Q 031176 25 CDRDIIAGCEREVAEA-NDDKQKS--ESIMRLSWALVHSRQAEDVQRGIAMLE--ASLANSSPPLQQREKLYLLAVGYYR 99 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~~~~s~--~~~F~yA~aLi~S~~~~d~~~gi~lLe--~ll~~~~~~~~~rd~lY~LAlg~~k 99 (164)
.++++.....+..++. ...+.++ .....|+|.++ +.++..+|.+.|+ ..+.. .++..++. .||..+.+
T Consensus 310 l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~---~~~~~~~A~~~le~a~a~~~---~p~~~~~~-~La~ll~~ 382 (409)
T TIGR00540 310 LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM---KHGEFIEAADAFKNVAACKE---QLDANDLA-MAADAFDQ 382 (409)
T ss_pred cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH---HcccHHHHHHHHHHhHHhhc---CCCHHHHH-HHHHHHHH
Confidence 3344444455555554 4455566 77889999999 6777889999999 45554 33555555 99999999
Q ss_pred hcchHHHHHHHHHHHh
Q 031176 100 TGEYAKSRQILEQCLE 115 (164)
Q Consensus 100 l~~Y~~A~~~~~~lL~ 115 (164)
+|+.++|.+++++.|.
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998755
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.047 Score=46.77 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 33 CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 33 ~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
+.+-|.+.-++.|+..+..--=.+.+++.-+ ..++|+-|.++++. -+...|+|-+||-.|...++|++|--|.+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGK--NLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCC--cHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 4555666655556655544444444444222 22566666666664 345579999999999999999999999999
Q ss_pred HHhhCCCcH
Q 031176 113 CLEIAPDWR 121 (164)
Q Consensus 113 lL~~eP~n~ 121 (164)
++=+.|-|+
T Consensus 180 ~ll~~P~n~ 188 (289)
T KOG3060|consen 180 LLLIQPFNP 188 (289)
T ss_pred HHHcCCCcH
Confidence 999999998
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.22 E-value=0.031 Score=53.61 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=62.0
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.-++....+.--+|-+|....++..- ....+|.+.++- || ..++.||||+-.+-++|+.+.|-.|.+.++++||.|
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la-~~~~~L~dalr~--dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLA-EKRSLLSDALRL--DP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchH-HHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 44666788888999999976644332 233377787885 44 667999999999999999999999999999999998
Q ss_pred H
Q 031176 121 R 121 (164)
Q Consensus 121 ~ 121 (164)
+
T Consensus 788 P 788 (799)
T KOG4162|consen 788 P 788 (799)
T ss_pred C
Confidence 6
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.21 E-value=0.031 Score=50.07 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
.+.+..-.+|--|+ +.++.+.|+++....+.. .| ..-++||+||.+|.++|+|++|+-.++.+
T Consensus 232 ~d~~LL~~Qa~fLl---~k~~~~lAL~iAk~av~l--sP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 232 QDSELLNLQAEFLL---SKKKYELALEIAKKAVEL--SP-SEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 34555555666666 455556677777666664 34 44488888888888888888888776643
No 101
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.041 Score=49.33 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
--|+-+||.+|.|+++|..|+++|+.+|.++|+|..|.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 46888999999999999999999999999999997543
No 102
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.19 E-value=0.014 Score=35.13 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcchHHHHHH--HHHHHhhCCCc
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQI--LEQCLEIAPDW 120 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~--~~~lL~~eP~n 120 (164)
|++|-+|..++..|+|++|+++ ..-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 7899999999999999999999 44888888876
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.18 E-value=0.048 Score=53.49 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+...+||.||.+|-++|++++|...++++|+.+|+|..+..
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHH
Confidence 34579999999999999999999999999999999998764
No 104
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.14 E-value=0.084 Score=41.13 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc---------------hHHHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE---------------YAKSR 107 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~---------------Y~~A~ 107 (164)
++-+.+++..++++.. ..++...|+.-++..++-+-..+...-.+|..+++++++.+ ..+|+
T Consensus 43 g~ya~qAqL~l~yayy---~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~ 119 (142)
T PF13512_consen 43 GEYAEQAQLDLAYAYY---KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAF 119 (142)
T ss_pred CcccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHH
Confidence 4458899999999999 66788889999988888643334566788999999999998 99999
Q ss_pred HHHHHHHhhCCCcHHHHH
Q 031176 108 QILEQCLEIAPDWRQALG 125 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~ 125 (164)
...+++++.-|+.+=+..
T Consensus 120 ~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 120 RDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHHHHHCcCChhHHH
Confidence 999999999999876654
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.13 E-value=0.011 Score=38.77 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=37.4
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|+..|.+.++|++|+++++++++++|++......+-.+.-...+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~ 44 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR 44 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc
Confidence 45678999999999999999999999999988877777655443
No 106
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.12 E-value=0.041 Score=52.42 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
+++..|++-.-- ....++.|+.+.+..++- .++.-..+.+||+.|-.+|++++|+.+++.+|++.|..-++
T Consensus 354 adam~NLgni~~---E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 354 ADAMNNLGNIYR---EQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHHHHHHHHHHH---HhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 344444444333 334444444444444442 22344444455555555555555555555555555544443
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.09 E-value=0.12 Score=50.37 Aligned_cols=108 Identities=9% Similarity=0.021 Sum_probs=85.3
Q ss_pred cccCCCCCCCCCHHHHHHH--------------HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 15 FFTGGDQIPWCDRDIIAGC--------------EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 15 ~~~~~~~lp~~~~~~l~~~--------------e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
.|++....|++|.++...+ |+.+++. ...+-+......+|-... ..+.-++|.++++.....
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~---~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL---ARDLPRKAEQELKAVESL 479 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhhh
Confidence 5777788999998887655 4444444 334446777777777777 677788888888775553
Q ss_pred CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 80 SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 80 ~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
+| +..+..+-++.++-.++++.+|....+.+++..|++...+.|+.
T Consensus 480 --~P-~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 480 --AP-RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred --CC-ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 34 55689999999999999999999999999999999999999886
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.038 Score=50.36 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
++.-+.+++|+++|+++|+|++|+.+++++|+++|++.+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~ 112 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQ 112 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Confidence 45569999999999999999999999999999999998763
No 109
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.01 E-value=0.028 Score=42.28 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
+.+.+++|+.++ ..++..+|+..|+. +.. +.-....+..++-.|.+.|++++|+..++.+|
T Consensus 85 ~~a~l~LA~~~~---~~~~~d~Al~~L~~-~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILL---QQGQYDEALATLQQ-IPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHh-ccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 568899999999 77788899999977 332 33455788999999999999999999998865
No 110
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.06 Score=45.88 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH-HHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA-LGL 126 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa-~~L 126 (164)
+..|+-|+.+++|.+ +..|..-|.+.+.+--+..-.-+++|+|+-.+|.+|+|+.|-.....+.+--|+++.+ -.|
T Consensus 142 ~~~Y~~A~~~~ksgd---y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLYKSGD---YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 347999999997765 8889999989888632233456999999999999999999999999999999999877 444
Q ss_pred HH
Q 031176 127 KK 128 (164)
Q Consensus 127 ~~ 128 (164)
.+
T Consensus 219 lK 220 (262)
T COG1729 219 LK 220 (262)
T ss_pred HH
Confidence 33
No 111
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.80 E-value=0.051 Score=45.82 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=64.1
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
+..+++..+|...+ +.+|...|..-||+.|.. || +.-+.|--+|..|-++|+-+.|.+.++++|+++|+|-.+
T Consensus 33 ~aa~arlqLal~YL---~~gd~~~A~~nlekAL~~--DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 33 EAAKARLQLALGYL---QQGDYAQAKKNLEKALEH--DP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence 35688899999999 889999999999999995 45 445888889999999999999999999999999998644
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.79 E-value=0.12 Score=43.30 Aligned_cols=79 Identities=20% Similarity=0.158 Sum_probs=57.3
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
+.-.-..+.+|+.+..-.++.+-.++.......... ....+++.+..|+.++..|++++|..+++++|+..|+|..+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA---RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 445667777787777555555544444444443332 23568999999999999999999999999999999999866
Q ss_pred HH
Q 031176 124 LG 125 (164)
Q Consensus 124 ~~ 125 (164)
..
T Consensus 80 ~~ 81 (355)
T cd05804 80 LK 81 (355)
T ss_pred HH
Confidence 54
No 113
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.75 E-value=0.094 Score=50.99 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
+.++..+|+++++.++.. +|.+ .+.++.|++.+...+++++|++.++++++.+|++..++.+
T Consensus 114 ~~gdyd~Aiely~kaL~~--dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l 175 (822)
T PRK14574 114 NEKRWDQALALWQSSLKK--DPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL 175 (822)
T ss_pred HcCCHHHHHHHHHHHHhh--CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence 455666788888777775 4544 5777777777788888888888888888888877766444
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.70 E-value=0.05 Score=50.71 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHH-hcC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC------------------
Q 031176 25 CDRDIIAGCEREVAEA-NDD--KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP------------------ 83 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~~--~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~------------------ 83 (164)
+++..+.+..+.|.+. ... +.+++.+--+....- -.++..++|..|+..|.. .|
T Consensus 405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~---ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~ 479 (579)
T KOG1125|consen 405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN---LSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNR 479 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh---cchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcc
Confidence 7889999999999998 222 245555555544433 456888999999888874 34
Q ss_pred ---------------CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 84 ---------------LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 84 ---------------~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
+......|+|||.|.++|.|.+|.++.=.+|.+.+.++..+
T Consensus 480 s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~ 535 (579)
T KOG1125|consen 480 SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHN 535 (579)
T ss_pred cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence 45556779999999999999999999999999999844433
No 115
>PRK15331 chaperone protein SicA; Provisional
Probab=95.70 E-value=0.054 Score=43.20 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 90 LYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 90 lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.||.|..|..+|+.++|+++.+.++. .|++
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 56666666666666666666666666 3443
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.69 E-value=0.037 Score=51.51 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
..--|.-++-|+ +.+++.+++-.||..+.+ +| ..-|+|-+|++.|+..++=..|..+..++|+++|+|.+|.
T Consensus 285 ~pdPf~eG~~lm---~nG~L~~A~LafEAAVkq--dP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaL 356 (579)
T KOG1125|consen 285 HPDPFKEGCNLM---KNGDLSEAALAFEAAVKQ--DP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEAL 356 (579)
T ss_pred CCChHHHHHHHH---hcCCchHHHHHHHHHHhh--Ch-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHH
Confidence 344588899999 777799999999999996 45 5559999999999999999999999999999999999764
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.68 E-value=0.19 Score=47.73 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
+..++.--.+..|- .-++-++|-+...--++. +...+-||--+++.+-..++|++|.+|+..+|.++|+|.|-.
T Consensus 39 eHgeslAmkGL~L~---~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 39 EHGESLAMKGLTLN---CLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred ccchhHHhccchhh---cccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455544555554 344555666666555553 356679999999999999999999999999999999999865
Q ss_pred HHHHHHHhHh-------------------hhhhHHHHHHHHHHHH
Q 031176 125 GLKKTVEDRI-------------------AKDGVIGIGITATAVG 150 (164)
Q Consensus 125 ~L~~~Ie~~~-------------------~~dGliG~~i~~~a~~ 150 (164)
.=..+++-.| .+.-++|.+++.-..|
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4333333332 2366777777654433
No 118
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.66 E-value=0.45 Score=38.99 Aligned_cols=75 Identities=15% Similarity=0.297 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 47 SESIMRLSWALVHSRQ----AEDVQRGIAMLEASLANSSP---PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~----~~d~~~gi~lLe~ll~~~~~---~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
.......||..=-..+ ..-.++|.+.+++.+..... +.+.--.+|++|.-++|+|+|++|++++.+++...-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 6677788997653333 23466889999998876332 2334567899999999999999999999999987544
Q ss_pred cH
Q 031176 120 WR 121 (164)
Q Consensus 120 n~ 121 (164)
+.
T Consensus 198 s~ 199 (214)
T PF09986_consen 198 SK 199 (214)
T ss_pred CC
Confidence 44
No 119
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.059 Score=46.46 Aligned_cols=65 Identities=23% Similarity=0.227 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+++.++-+.-|+.-+.. +| +.-+-|+.|+-.|.++++++.|...+..++++.|+|.+.....-.+
T Consensus 135 ~~~~~~l~a~Le~~L~~--nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aea 199 (287)
T COG4235 135 EQEMEALIARLETHLQQ--NP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEA 199 (287)
T ss_pred cccHHHHHHHHHHHHHh--CC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45578888999998886 44 5569999999999999999999999999999999999887665544
No 120
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.60 E-value=0.022 Score=37.93 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.-.+++++|..|.++|+|++|+.+++++|++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999965
No 121
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.57 E-value=0.094 Score=47.03 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=60.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH----HHHHHHHH
Q 031176 54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR----QALGLKKT 129 (164)
Q Consensus 54 A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~----Qa~~L~~~ 129 (164)
|-|+| ..++.++||.-|...-+- ..+..|.+|-++--+|..|+-+.++.-+..+|+++|++. -++.|++.
T Consensus 196 akc~i---~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 196 AKCYI---AEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHH---hcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence 67777 677888899888886664 345579999999999999999999999999999999975 56666665
Q ss_pred HHh
Q 031176 130 VED 132 (164)
Q Consensus 130 Ie~ 132 (164)
+..
T Consensus 270 ~K~ 272 (504)
T KOG0624|consen 270 VKS 272 (504)
T ss_pred HHH
Confidence 543
No 122
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.45 E-value=0.013 Score=34.36 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHH
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
++..+.||+||..|++.|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3556999999999999999999973
No 123
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.21 Score=45.64 Aligned_cols=112 Identities=13% Similarity=0.017 Sum_probs=80.7
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q 031176 15 FFTGGDQIPWCDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLL 93 (164)
Q Consensus 15 ~~~~~~~lp~~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~L 93 (164)
.|+++-++|.+. .-+++.+-|+.. ...+.=..+-.-.|..+. ..+-+..||.+||..+.. . | ....+-.|
T Consensus 407 L~g~~V~~~dp~--~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~---~Eg~~~D~i~LLe~~L~~-~-~--D~~LH~~L 477 (564)
T KOG1174|consen 407 LFGTLVLFPDPR--MREKAKKFAEKSLKINPIYTPAVNLIAELCQ---VEGPTKDIIKLLEKHLII-F-P--DVNLHNHL 477 (564)
T ss_pred hhcceeeccCch--hHHHHHHHHHhhhccCCccHHHHHHHHHHHH---hhCccchHHHHHHHHHhh-c-c--ccHHHHHH
Confidence 455555555444 666777777776 333333455555555555 466778899999998885 1 1 22456778
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 94 AVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 94 Alg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
+-...-..+|.+|..++..+|+++|+|+.++.=.+.+|+.+.
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 888889999999999999999999999998887777877654
No 124
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.37 E-value=0.3 Score=42.92 Aligned_cols=68 Identities=21% Similarity=0.134 Sum_probs=49.0
Q ss_pred CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 61 RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 61 ~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
...++..++.+.|++..+. +|...--.....+-.+...|+|+.|+.+++.+++.+|+|+.+..+...+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3677788899999887774 2322212222347788899999999999999999999998766555433
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.076 Score=45.14 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=57.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 53 LSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 53 yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
|+-.++ ..++..+++..|...... +| ..-+.|.-|+++|-++|+++.|+..+.++|++.|+++.+..
T Consensus 106 ~gk~~~---~~g~~~~A~~~~rkA~~l--~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~n 172 (257)
T COG5010 106 QGKNQI---RNGNFGEAVSVLRKAARL--AP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIAN 172 (257)
T ss_pred HHHHHH---HhcchHHHHHHHHHHhcc--CC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhh
Confidence 777777 778889999999998885 45 44599999999999999999999999999999999987654
No 126
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.17 E-value=0.09 Score=45.64 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
..+++++||..-.+.+.- +|.+. -|+-+-|-+|.+||+|+.|.+-|+.+|+++|.-..+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l--~P~nA-VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yska 151 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL--DPTNA-VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKA 151 (304)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHH
Confidence 456788899999888885 45333 566678999999999999999999999999986543
No 127
>PRK15331 chaperone protein SicA; Provisional
Probab=95.16 E-value=0.44 Score=38.04 Aligned_cols=70 Identities=4% Similarity=-0.003 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.-+..+.+|+.+- +.+++.+|..++.-|+-- ++ ..++||+-||..+=.+++|++|..++-.+.-++|+|+
T Consensus 36 ~le~iY~~Ay~~y---~~Gk~~eA~~~F~~L~~~--d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 36 MMDGLYAHAYEFY---NQGRLDEAETFFRFLCIY--DF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 3466788999999 788889999999887774 45 4468999999999999999999999999999998887
No 128
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.07 E-value=0.13 Score=49.22 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=69.0
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
+-|.+. .-++.=++++-|+|-+|- +.+++.+|+......++- .| +.-|.+|+|+.+|-.++.+++|.+.+..+
T Consensus 307 ~~Ykral~~~P~F~~Ay~NlanALk---d~G~V~ea~~cYnkaL~l--~p-~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 307 DTYKRALELQPNFPDAYNNLANALK---DKGSVTEAVDCYNKALRL--CP-NHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHhcCCCchHHHhHHHHHHH---hccchHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456665 445556889999999998 889999999999998885 24 45599999999999999999999999999
Q ss_pred HhhCCCcHHH
Q 031176 114 LEIAPDWRQA 123 (164)
Q Consensus 114 L~~eP~n~Qa 123 (164)
|++.|+...+
T Consensus 381 l~v~p~~aaa 390 (966)
T KOG4626|consen 381 LEVFPEFAAA 390 (966)
T ss_pred HhhChhhhhh
Confidence 9999987643
No 129
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.99 E-value=0.097 Score=33.66 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q 031176 29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA 94 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LA 94 (164)
+...+.+.|.+. ...+.+.++.+.+|.+++ ..++..+|.++|+.++.. +|. ..+++..+|
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~~~~~--~~~-~~~~~~l~a 66 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYL---KQGQYDEAEELLERLLKQ--DPD-NPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH---HTT-HHHHHHHHHCCHGG--GTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--CcC-HHHHHHHHh
Confidence 344556666666 556669999999999999 667888999999998885 343 345555554
No 130
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.41 Score=44.24 Aligned_cols=127 Identities=10% Similarity=0.106 Sum_probs=90.9
Q ss_pred hhhhhhhcc------cccCCCCCCCCCHHHHHHHHHHHHHH--------------hcCCCchHHHHHHHHHHHhcCChhH
Q 031176 6 SKFFDSIGS------FFTGGDQIPWCDRDIIAGCEREVAEA--------------NDDKQKSESIMRLSWALVHSRQAED 65 (164)
Q Consensus 6 ~~~~~~~~~------~~~~~~~lp~~~~~~l~~~e~~y~~~--------------~~~~~s~~~~F~yA~aLi~S~~~~d 65 (164)
|+.-+.|+= ||+++..+.-.|+-+...+.+-|+.. .-+.....+...+|-..= +-++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye---~l~d 481 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE---ELKD 481 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH---HHHh
Confidence 444555543 67777666666777777776666554 111223344555554443 5678
Q ss_pred HHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 66 VQRGIAMLEASLANS----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
.++|...++..+... .-.+..+.+.-+||.-+.|.++|++|-.|+..++.-+|..+.++.|.+.|.+.+.
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 888988888877631 1234566777789999999999999999999999999999999999999987654
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.22 Score=49.10 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+|.+.-.+|--.. -.+|+.+..++-+-.+..+....-..+.+|++|-+|..+|||++|..|+.+.++.+|+|
T Consensus 269 nP~~l~~LAn~fy---fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 269 NPVALNHLANHFY---FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred CcHHHHHHHHHHh---hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 4455555555555 45566666666655555433334556778888888888888888888888888888887
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.83 E-value=0.44 Score=43.96 Aligned_cols=92 Identities=9% Similarity=0.036 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHH-h--cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176 28 DIIAGCEREVAEA-N--DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 28 ~~l~~~e~~y~~~-~--~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~ 104 (164)
+.+.++.+...+. . .+...+.+ ..|.++++. ..++..+|+..|+..+.- +| . -+.+++++..+...|+++
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~--~~ala~~~~-~~g~~~~A~~~l~rAl~L--~p-s-~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRI--YEILAVQAL-VKGKTDEAYQAINKAIDL--EM-S-WLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHH--HHHHHHHHH-hcCCHHHHHHHHHHHHHc--CC-C-HHHHHHHHHHHHHcCCHH
Confidence 4566666666554 2 23334444 444455543 357899999999999986 34 3 578999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHH
Q 031176 105 KSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 105 ~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
+|..+++++++++|.++..---
T Consensus 471 eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 471 LAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred HHHHHHHHHHhcCCCCchHHHH
Confidence 9999999999999998865433
No 133
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.48 Score=44.03 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=68.2
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
..++.++..+=|-|.|++ .-.+..+|+.-.+..++. +|...+-|+ .=+.+++-+++|++|.+.++..|+++|+|
T Consensus 386 kr~P~Da~lYsNRAac~~---kL~~~~~aL~Da~~~ieL--~p~~~kgy~-RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 386 KRDPEDARLYSNRAACYL---KLGEYPEALKDAKKCIEL--DPNFIKAYL-RKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred hcCCchhHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 445667888889999999 788899999999888885 565554444 44999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 031176 121 RQALGLKKTV 130 (164)
Q Consensus 121 ~Qa~~L~~~I 130 (164)
..+..--...
T Consensus 460 ~e~~~~~~rc 469 (539)
T KOG0548|consen 460 AEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHH
Confidence 9877644433
No 134
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.50 E-value=0.5 Score=39.73 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=64.8
Q ss_pred HHHHHHHHHH-hc-----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176 31 AGCEREVAEA-ND-----DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 31 ~~~e~~y~~~-~~-----~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~ 104 (164)
..+...|.+. .. .+...-..-|-|-|+| ..+..+.+|+-....+.- .|. -.-++---|-+|-++..|+
T Consensus 112 eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i---Kl~k~e~aI~dcsKaiel--~pt-y~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 112 EEANSKYQEALESCPSTSTEERSILYSNRAAALI---KLRKWESAIEDCSKAIEL--NPT-YEKALERRAEAYEKMEKYE 185 (271)
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH---HhhhHHHHHHHHHhhHhc--Cch-hHHHHHHHHHHHHhhhhHH
Confidence 3455667766 11 1222334445577777 555666677766666664 242 2345556689999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 105 KSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 105 ~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
+|+.=+..+|+++|.++|++.=-..+..
T Consensus 186 ealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 186 EALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 9999999999999999998765444433
No 135
>PLN02789 farnesyltranstransferase
Probab=94.36 E-value=0.42 Score=41.42 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch--HHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY--AKSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y--~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
.+++++.++.++.. +| ..-..|++.+....+++++ ++++.+++.+|+.+|.|-.|=.=+.-+-.
T Consensus 88 l~eeL~~~~~~i~~--np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 88 LEEELDFAEDVAED--NP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHHHHHHHHHHHHH--CC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44455555554443 12 2224455555444444442 44455555555555555554444443333
No 136
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.34 E-value=0.57 Score=34.74 Aligned_cols=83 Identities=23% Similarity=0.329 Sum_probs=54.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q 031176 15 FFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA 94 (164)
Q Consensus 15 ~~~~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LA 94 (164)
|+.+.+.-||..+ .-..+++.|. ++.-.++-.+. ..++..+++.+++.++.. +| ..-+.+..|-
T Consensus 40 ~l~~~~~~~W~~~-~r~~l~~~~~---------~~~~~l~~~~~---~~~~~~~a~~~~~~~l~~--dP-~~E~~~~~lm 103 (146)
T PF03704_consen 40 FLPDLDDEEWVEP-ERERLRELYL---------DALERLAEALL---EAGDYEEALRLLQRALAL--DP-YDEEAYRLLM 103 (146)
T ss_dssp TTGGGTTSTTHHH-HHHHHHHHHH---------HHHHHHHHHHH---HTT-HHHHHHHHHHHHHH--ST-T-HHHHHHHH
T ss_pred CCCCCCccHHHHH-HHHHHHHHHH---------HHHHHHHHHHH---hccCHHHHHHHHHHHHhc--CC-CCHHHHHHHH
Confidence 5555455566543 2233444443 34444555566 677888999999999986 45 4557888999
Q ss_pred HHHHhhcchHHHHHHHHHH
Q 031176 95 VGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 95 lg~~kl~~Y~~A~~~~~~l 113 (164)
.+|++.|++..|++.++++
T Consensus 104 ~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 104 RALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHH
Confidence 9999999999999987665
No 137
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.24 E-value=0.17 Score=45.20 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=71.1
Q ss_pred HHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 36 EVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
=|.+. +.|-.+++..-|.+.|-+ ..+.+.-...-++..+..-..|...-|.||+|+...--.||+.-|.+|.+.+|
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~---yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCL---YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHH---hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 46666 778889999999998888 56666666666665555434577888999999999999999999999999999
Q ss_pred hhCCCcHHHHHH
Q 031176 115 EIAPDWRQALGL 126 (164)
Q Consensus 115 ~~eP~n~Qa~~L 126 (164)
..+|+|..+..=
T Consensus 423 ~~d~~h~ealnN 434 (478)
T KOG1129|consen 423 TSDAQHGEALNN 434 (478)
T ss_pred ccCcchHHHHHh
Confidence 999999876543
No 138
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.12 E-value=0.41 Score=44.30 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
.+..+-.+-.+. ..++.++|++.|++.-.. -.++.-.+=..|-.+.++|++++|...+..+|+.+|+|..+-..
T Consensus 4 SE~lLY~~~il~---e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~ 77 (517)
T PF12569_consen 4 SELLLYKNSILE---EAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHH---HCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 344555566666 668999999999885543 34566777788999999999999999999999999999976554
Q ss_pred HHHH
Q 031176 127 KKTV 130 (164)
Q Consensus 127 ~~~I 130 (164)
....
T Consensus 78 L~~~ 81 (517)
T PF12569_consen 78 LEEA 81 (517)
T ss_pred HHHH
Confidence 4433
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.05 E-value=0.14 Score=47.39 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=47.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 52 RLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
.+|..+. +.+...+|+.++++.+... .+.+..--.|..||+.|++.|+|++|..||++++++-
T Consensus 246 ~~a~~y~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 246 ILALVYR---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHH---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 4777777 5666777777776655421 2334556778999999999999999999999999874
No 140
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=1.2 Score=41.90 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH-
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG- 125 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~- 125 (164)
..+.-|++++.. +.+...+||.-++..+.. .+..-+.+--+|..|..+|+.+.|..+...+|-+.|+|.-..+
T Consensus 455 ~p~~~NLGH~~R---kl~~~~eAI~~~q~aL~l---~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 455 EPTLNNLGHAYR---KLNKYEEAIDYYQKALLL---SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred hHHHHhHHHHHH---HHhhHHHHHHHHHHHHHc---CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 355677888887 777889999999998875 3355688889999999999999999999999999999966555
Q ss_pred HHHHHHhHhhhh
Q 031176 126 LKKTVEDRIAKD 137 (164)
Q Consensus 126 L~~~Ie~~~~~d 137 (164)
|+..||+-..+.
T Consensus 529 L~~aie~~~~~~ 540 (611)
T KOG1173|consen 529 LKLAIEDSECKS 540 (611)
T ss_pred HHHHHHhhhhhc
Confidence 556677644443
No 141
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.88 E-value=0.21 Score=35.59 Aligned_cols=54 Identities=30% Similarity=0.394 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc--HHHHH
Q 031176 69 GIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW--RQALG 125 (164)
Q Consensus 69 gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n--~Qa~~ 125 (164)
.++-|+.-+.. +| ...+..|.||..+...|+|+.|+.-+-.+++.+|++ .+++.
T Consensus 7 ~~~al~~~~a~--~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~ 62 (90)
T PF14561_consen 7 DIAALEAALAA--NP-DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK 62 (90)
T ss_dssp HHHHHHHHHHH--ST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH
T ss_pred cHHHHHHHHHc--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH
Confidence 34556666664 34 455999999999999999999999999999999987 44443
No 142
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.81 E-value=0.1 Score=46.12 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH----HhhCCC
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC----LEIAPD 119 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l----L~~eP~ 119 (164)
+...++..+.++.+. +.+..+.++.-+...+.-+ ..+ .=.-|++|++||+.|+|..|++++-.+ .+-.|+
T Consensus 141 en~Ad~~in~gClly---kegqyEaAvqkFqaAlqvs--Gyq-pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 141 ENEADGQINLGCLLY---KEGQYEAAVQKFQAALQVS--GYQ-PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred CCccchhccchheee---ccccHHHHHHHHHHHHhhc--CCC-chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 456788999999998 7888999999999988752 222 256699999999999999999986544 455554
No 143
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.40 E-value=0.93 Score=40.78 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC----------------------------CchHHHHHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP----------------------------LQQREKLYLLAVGY 97 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~----------------------------~~~rd~lY~LAlg~ 97 (164)
++.....||--|+ +-++-..|.+++++.++...|| ++.-+.++.|+.-|
T Consensus 262 ~p~l~~~~a~~li---~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 262 DPELVVAYAERLI---RLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred ChhHHHHHHHHHH---HcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 3566667777777 5566666777777666654222 22238889999999
Q ss_pred HhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 98 YRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 98 ~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
+|.+.|.+|..+.+.+|+..|+..-...|-...+.
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSASDYAELADALDQ 373 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 99999999999999999999999988887776654
No 144
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.40 E-value=0.37 Score=37.31 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
.|.+.-.|-.++..|||.-|.+.++.++..+|+|.+++.|+...-+++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5888899999999999999999999999999999999999987665544
No 145
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.26 E-value=1.7 Score=32.14 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
..+++--++-.+...|+|++|.+.+++++..+|-|+++-..
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~ 101 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRL 101 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 35777888889999999999999999999999999876553
No 146
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.21 E-value=0.21 Score=30.29 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV 95 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl 95 (164)
+++.+.+|..+. ..++..+|+.+++..+.. +| +..+.++.||.
T Consensus 1 p~~~~~la~~~~---~~G~~~~A~~~~~~~l~~--~P-~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR---RLGQPDEAERLLRRALAL--DP-DDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--Cc-CCHHHHHHhhh
Confidence 467889999999 677888999999999996 45 44588888874
No 147
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.35 Score=42.82 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.-...+|++|..-.+. .+..|-.+-.|+-.||...+|.+|-.|++++=++.|.-.|++
T Consensus 24 ~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr 81 (459)
T KOG4340|consen 24 ARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR 81 (459)
T ss_pred hhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 3455566666665553 334566777777777777777777777777777777766554
No 148
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.91 E-value=0.92 Score=43.05 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=42.7
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.-++-.+|.-|-.|. .-..+.++...||+|-.- .| +---.+|.|+..|-++|+++.|+.-.--++.++|.-.|
T Consensus 554 ~kn~l~~~~~~~il~---~~~~~~eal~~LEeLk~~--vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~- 626 (638)
T KOG1126|consen 554 PKNPLCKYHRASILF---SLGRYVEALQELEELKEL--VP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ- 626 (638)
T ss_pred CCCchhHHHHHHHHH---hhcchHHHHHHHHHHHHh--Cc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch-
Confidence 335555555555555 334455555555554332 23 22345556666666666666666666666666665555
Q ss_pred HHHHHHHH
Q 031176 124 LGLKKTVE 131 (164)
Q Consensus 124 ~~L~~~Ie 131 (164)
..-+..++
T Consensus 627 i~~k~~~~ 634 (638)
T KOG1126|consen 627 IQIKAAIE 634 (638)
T ss_pred hhHHHHhh
Confidence 44444443
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.71 E-value=1.1 Score=37.48 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC-CC---CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC---
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS-PP---LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD--- 119 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~-~~---~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~--- 119 (164)
.+...+.|-.++ ..+++.+|++++++.....- .+ ..-++++....+.|.-.||+..|.+.++...+.+|.
T Consensus 155 ~~~~~~~A~l~~---~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 155 AECLLKAADLYA---RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 566667787777 55699999999999887421 11 234577777888999999999999999999999994
Q ss_pred cHHHHHHHHHHHhH
Q 031176 120 WRQALGLKKTVEDR 133 (164)
Q Consensus 120 n~Qa~~L~~~Ie~~ 133 (164)
-++++-|..+|+.-
T Consensus 232 s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 232 SREYKFLEDLLEAY 245 (282)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 56777777777654
No 150
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.56 E-value=0.18 Score=42.93 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 53 LSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 53 yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
||+.+. ++.|..-+.+++.+.+.- .++--+-|+-++--+-|-|+++.|-+.+++.|+++|++.+..+||-.+
T Consensus 1 ~a~~~~---~~~D~~aaaely~qal~l---ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~ 72 (287)
T COG4976 1 YAYMLA---ESGDAEAAAELYNQALEL---APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAV 72 (287)
T ss_pred Ccchhc---ccCChHHHHHHHHHHhhc---CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHh
Confidence 455666 566777888888888874 345567788888888888889999999999999999999999998665
No 151
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.54 E-value=0.97 Score=40.40 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh---------cchHHHHHHHHHHHhh
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT---------GEYAKSRQILEQCLEI 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl---------~~Y~~A~~~~~~lL~~ 116 (164)
++..+|.||.+|.|-+.++|.++|+.++..++.. . .....|-+-.++-.|..+ ...++|...+.+..++
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~-~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLES-D-ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-c-CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 6899999999999988899999999999996665 2 334457666666665432 3467899999999999
Q ss_pred CCCcHHHHHHHHHH
Q 031176 117 APDWRQALGLKKTV 130 (164)
Q Consensus 117 eP~n~Qa~~L~~~I 130 (164)
+|+--.++.+-.++
T Consensus 256 ~~~~Y~GIN~AtLL 269 (374)
T PF13281_consen 256 EPDYYSGINAATLL 269 (374)
T ss_pred CccccchHHHHHHH
Confidence 98876666555544
No 152
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=92.53 E-value=1.4 Score=40.60 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=76.0
Q ss_pred hhhhhhhcccccCCCCCCC------CCHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 031176 6 SKFFDSIGSFFTGGDQIPW------CDRDIIAGCEREVAEA--NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASL 77 (164)
Q Consensus 6 ~~~~~~~~~~~~~~~~lp~------~~~~~l~~~e~~y~~~--~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll 77 (164)
=.+|+.+.+-.+.+...|. ...+=|..+|..-+.. .+..++++-+|.-+-...+..-. ....+-.++ ...
T Consensus 223 ~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~-~~~~~~~~~-~~~ 300 (484)
T COG4783 223 PEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEAL-PNQQAADLL-AKR 300 (484)
T ss_pred HHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccc-cccchHHHH-HHH
Confidence 3455555552244444443 3445566677665555 33344555555555554432211 111222222 212
Q ss_pred hCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 78 ANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 78 ~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
. . +......|-.|+.+|..|+|+.|+...+.++...|+|.=+.++...|.-+
T Consensus 301 ~---~-~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~ 352 (484)
T COG4783 301 S---K-RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE 352 (484)
T ss_pred h---C-ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2 1 25568999999999999999999999999999999999999998887543
No 153
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=92.53 E-value=0.91 Score=43.91 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=75.4
Q ss_pred HHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 36 EVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
.|++. +-+..++++.|.+|.-.. ...++..|.....+.+.- .+...-.+|-+||+...-.++|..|+..++.+|
T Consensus 466 ale~av~~d~~dp~~if~lalq~A---~~R~l~sAl~~~~eaL~l--~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYA---EQRQLTSALDYAREALAL--NRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHH---HHHhHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34444 556667899999998888 667788888888887774 244556899999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHhHhh
Q 031176 115 EIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 115 ~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
.--|+|.+-..++-.|+-...
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFN 561 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcc
Confidence 999999888887777766543
No 154
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=1.4 Score=41.08 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=65.3
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|++. +-++++.=+..++++++- +...+......+++..++ -+.-.||+-+.|-...-.++|++|.++++.+
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Y---r~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALY---RQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 334443 446667778888899999 455788889999998886 3466699999999999999999999999999
Q ss_pred HhhCCC
Q 031176 114 LEIAPD 119 (164)
Q Consensus 114 L~~eP~ 119 (164)
.+++|.
T Consensus 489 i~LE~~ 494 (606)
T KOG0547|consen 489 IELEPR 494 (606)
T ss_pred Hhhccc
Confidence 999999
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.23 E-value=2.3 Score=38.17 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
++..+-+|-.++.. ++-.+||.+|.+.+.. .| +.-+-|-.-|--+.+.++|+.|+.+++++.++-|++-..-..
T Consensus 200 pev~~~LA~v~l~~---~~E~~AI~ll~~aL~~--~p-~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~ 273 (395)
T PF09295_consen 200 PEVAVLLARVYLLM---NEEVEAIRLLNEALKE--NP-QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQ 273 (395)
T ss_pred CcHHHHHHHHHHhc---CcHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45666677777743 3346788888888875 23 445777777777888888888888888888888887765554
Q ss_pred H
Q 031176 127 K 127 (164)
Q Consensus 127 ~ 127 (164)
.
T Consensus 274 L 274 (395)
T PF09295_consen 274 L 274 (395)
T ss_pred H
Confidence 3
No 156
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.20 E-value=1.5 Score=42.33 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 29 IIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 29 ~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
++.++++...+.-...++....+-++.-+- ..+.+++++.+||+.++. -++.+-.|..++..+-.+++.+.|+.
T Consensus 633 e~eraR~llakar~~sgTeRv~mKs~~~er---~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 633 ELERARDLLAKARSISGTERVWMKSANLER---YLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred cHHHHHHHHHHHhccCCcchhhHHHhHHHH---HhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 455566666665444557777777777776 788999999999999996 56788889999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 109 ILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
.+.+-++.-|...--=-|...+|++.
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHh
Confidence 99999999999987777777776653
No 157
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.85 E-value=0.22 Score=27.21 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHH
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
.+++.||..+...|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 367899999999999999998876
No 158
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=91.79 E-value=2.4 Score=36.12 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=68.6
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
...+....+ .+++-++. -.++-..+...+..++.. +...++.+--++...++.|+|.+|...+.++.++.|+|
T Consensus 61 ~~~p~d~~i-~~~a~a~~---~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 61 LRNPEDLSI-AKLATALY---LRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred hcCcchHHH-HHHHHHHH---hcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 445555666 88999988 444555666677775553 34456777778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhh
Q 031176 121 RQALGLKKTVEDRIAK 136 (164)
Q Consensus 121 ~Qa~~L~~~Ie~~~~~ 136 (164)
..+..++-.+=++.-+
T Consensus 134 ~~~~~~lgaaldq~Gr 149 (257)
T COG5010 134 WEAWNLLGAALDQLGR 149 (257)
T ss_pred hhhhhHHHHHHHHccC
Confidence 9999998888665443
No 159
>PRK10941 hypothetical protein; Provisional
Probab=91.22 E-value=1.4 Score=37.46 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 50 IMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
.=|+=++++ +.++..+|....+-++.-. .+|...|| -++.|++++.+..|+.=.+..|+..|+++.+..+|.
T Consensus 184 l~nLK~~~~---~~~~~~~AL~~~e~ll~l~P~dp~e~RD----RGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALM---EEKQMELALRASEALLQFDPEDPYEIRD----RGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHH---HcCcHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 345566667 5667778887777766631 23444555 688899999999999999999999999999999999
Q ss_pred HHHhH
Q 031176 129 TVEDR 133 (164)
Q Consensus 129 ~Ie~~ 133 (164)
.|+.-
T Consensus 257 ql~~l 261 (269)
T PRK10941 257 QIHSI 261 (269)
T ss_pred HHHHH
Confidence 88764
No 160
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.98 E-value=2.4 Score=41.73 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+..+..|--|- -.++.++|.++|.+.++. +| ..-..+|+||..|-.+||.++|+.++-.+=.++|.|.
T Consensus 140 ~~ll~eAN~lf---arg~~eeA~~i~~EvIkq--dp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 140 RQLLGEANNLF---ARGDLEEAEEILMEVIKQ--DP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--Cc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence 34444444444 569999999999999997 44 4447888888888887777777777555555555554
No 161
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.82 E-value=1 Score=31.89 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
+..+.++|+...+..+++..+++++-..+=||+-+|...|+|.++++|.-+=+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999998666767777788999999999999999999765444
No 162
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=3.4 Score=35.81 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 48 ESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 48 ~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.+.-++|-+.|+. .....++.+.-+++++-.+ . ++. -.-+.-.|++|..+++|++|...++.+|..+|+++..
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~-~~T-~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-T-PPT-PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-c-CCC-hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 3333455555544 3345699999999998775 2 323 4788899999999999999999999999999999644
No 163
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.80 E-value=0.34 Score=30.35 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHH
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKL 90 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~l 90 (164)
+++++|.+++ .-+|...|.++|++++.. ++++.+.++-
T Consensus 1 ~kLdLA~ayi---e~Gd~e~Ar~lL~evl~~-~~~~q~~eA~ 38 (44)
T TIGR03504 1 TKLDLARAYI---EMGDLEGARELLEEVIEE-GDEAQRQEAR 38 (44)
T ss_pred CchHHHHHHH---HcCChHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 4789999999 788999999999999975 5555554443
No 164
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=1.5 Score=40.28 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=65.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+..+....=.||+.|- ...+.++--.+...|+.. ....+.-|+--+-..|-.++|++|+.|.+..++.+|.|-|
T Consensus 262 dpy~i~~MD~Ya~LL~---~eg~~e~~~~L~~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 262 NPDNVEAMDLYAVLLG---QEGGCEQDSALMDYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred ChhhhhhHHHHHHHHH---hccCHhhHHHHHHHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 3445566667888887 555666666666666665 2344566776666778889999999999999999999999
Q ss_pred HHHHHHHHHhHhhh
Q 031176 123 ALGLKKTVEDRIAK 136 (164)
Q Consensus 123 a~~L~~~Ie~~~~~ 136 (164)
+.-||-..=..+.|
T Consensus 336 alilKG~lL~~~~R 349 (564)
T KOG1174|consen 336 ALILKGRLLIALER 349 (564)
T ss_pred HHHhccHHHHhccc
Confidence 99988766554444
No 165
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=90.69 E-value=0.61 Score=44.90 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
..|+.++...|+..++- +| ..-+-||.+.-+..+++++..|.++..+.+.++|+|..+
T Consensus 498 ~~~fs~~~~hle~sl~~--np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEI--NP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred chhHHHHHHHHHHHhhc--Cc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 46778888888888875 23 445888888888888888888888888888888888743
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=90.63 E-value=8.4 Score=35.44 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=79.3
Q ss_pred CCCCCHHHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHhc------CChhHHHHHHHHHHHHhhCCCCCCchHHHHH
Q 031176 22 IPWCDRDIIAGCEREVAEAN----DDKQKSESIMRLSWALVHS------RQAEDVQRGIAMLEASLANSSPPLQQREKLY 91 (164)
Q Consensus 22 lp~~~~~~l~~~e~~y~~~~----~~~~s~~~~F~yA~aLi~S------~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY 91 (164)
+-...|+.++++.....+.. .++.-..+.=-+|||.... ..+.+..+|.++-+..++. ++ ...-+++
T Consensus 266 ~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~-~Da~a~~ 342 (458)
T PRK11906 266 LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TT-VDGKILA 342 (458)
T ss_pred hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CC-CCHHHHH
Confidence 33456777777666666652 2333355555556665533 4578999999999998886 34 3448999
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 92 LLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 92 ~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
.++.+..-.++++.|....++++.+.|+..++--+.-.+
T Consensus 343 ~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 343 IMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 999999999999999999999999999999988877664
No 167
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.55 E-value=0.78 Score=41.10 Aligned_cols=85 Identities=22% Similarity=0.304 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 30 IAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 30 l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
|..|++.....+++.+..+.-+|+.+.+| ..+|...|-..|+-.+.. +.+..+.+.+|||--.+.|+.+.|+.+
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV---~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAV---TIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEE---eccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 45577777777777789999999999999 667777777777766654 446679999999999999999999999
Q ss_pred HHHHHhhCCCc
Q 031176 110 LEQCLEIAPDW 120 (164)
Q Consensus 110 ~~~lL~~eP~n 120 (164)
++.+=.+.|+-
T Consensus 452 l~~A~s~~P~m 462 (478)
T KOG1129|consen 452 LNAAKSVMPDM 462 (478)
T ss_pred HHHhhhhCccc
Confidence 99999998874
No 168
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.86 Score=41.53 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
..-.|+||++....=+.||+.|++|.-++++..|+ .-+...++.+.+-
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k~ 292 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNKL 292 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHHH
Confidence 45679999999999999999999999999999998 6666666665543
No 169
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.30 E-value=5.3 Score=34.40 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=72.1
Q ss_pred cccccCCCCCCCCCHHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHH
Q 031176 13 GSFFTGGDQIPWCDRDI-IAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLY 91 (164)
Q Consensus 13 ~~~~~~~~~lp~~~~~~-l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY 91 (164)
..+|.+++.+|..+-++ +...++.|.+. -..+.-.++-.++ ..+..+..++.|+.++.. +| -....++
T Consensus 123 ~~~~~~g~~~~d~~f~~WV~~~R~~l~e~-----~~~~l~~lae~~~---~~~~~~~~~~~l~~Li~~--dp-~~E~~~~ 191 (280)
T COG3629 123 GELLSEGPVLGDDRFDEWVLEQRRALEEL-----FIKALTKLAEALI---ACGRADAVIEHLERLIEL--DP-YDEPAYL 191 (280)
T ss_pred HHHhhcCCcCCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---hcccHHHHHHHHHHHHhc--Cc-cchHHHH
Confidence 34555566666644333 33344444441 2334455666776 566778899999999986 45 4457778
Q ss_pred HHHHHHHhhcchHHHHHHHHHH---HhhCCCcHHHHHHHHHHHhHhh
Q 031176 92 LLAVGYYRTGEYAKSRQILEQC---LEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 92 ~LAlg~~kl~~Y~~A~~~~~~l---L~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
.|=-+|++.|++..|++.++++ +..++.=.++..+....++.+.
T Consensus 192 ~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~ 238 (280)
T COG3629 192 RLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEILR 238 (280)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhc
Confidence 8888999999999999998876 4455554445555554444433
No 170
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=3 Score=37.89 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHH---HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKL---YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~l---Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
...++++||++....+-. . ++++ -|+|+.|||+.=|+-+-+.++--|+.-|+..=|+.|+..
T Consensus 163 mR~HYQeAIdvYkrvL~d---n---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQD---N---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHHHHHHHHhc---C---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 467899999999987774 2 3444 699999999999999999999999999999999888753
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=89.76 E-value=1.5 Score=36.70 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=53.1
Q ss_pred hcCCCc--hHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 41 NDDKQK--SESIMRLSWALVHSRQA-EDVQRGIAMLEASLA---NSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 41 ~~~~~s--~~~~F~yA~aLi~S~~~-~d~~~gi~lLe~ll~---~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
..|.++ .....+.|-.+- +. ++.++|++.+++.+. ..+.+....+|+-.+|..+.++++|++|...++++.
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye---~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYE---EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHC---CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444443 445555555555 34 788888888887543 324455668999999999999999999999999998
Q ss_pred hhCCCcH
Q 031176 115 EIAPDWR 121 (164)
Q Consensus 115 ~~eP~n~ 121 (164)
+..-+++
T Consensus 183 ~~~l~~~ 189 (282)
T PF14938_consen 183 KKCLENN 189 (282)
T ss_dssp HTCCCHC
T ss_pred HHhhccc
Confidence 8655444
No 172
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.71 E-value=0.93 Score=31.94 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHHhhCC---CCCC---chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANS---SPPL---QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~---~~~~---~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
..+|+..+++-|...+... ..+. ...-++..+|..++..|++++|...++.++++-.++..-..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~ 79 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRC 79 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 3567777877777765532 1111 23567788999999999999999999999988765544333
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=89.46 E-value=8.2 Score=35.71 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHh--cCC---hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Q 031176 23 PWCDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVH--SRQ---AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG 96 (164)
Q Consensus 23 p~~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~--S~~---~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg 96 (164)
...+++.+.+....+++. ..++....+.-.+|++... +-. ..++..+.+.++..+....++... ..+.-+|+.
T Consensus 351 ~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~-~~~~ala~~ 429 (517)
T PRK10153 351 NSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP-RIYEILAVQ 429 (517)
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh-HHHHHHHHH
Confidence 334555566655555555 4444333333333332221 111 123444555544433321233333 566667778
Q ss_pred HHhhcchHHHHHHHHHHHhhCCCc
Q 031176 97 YYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 97 ~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+...|++++|..+++++++++|+.
T Consensus 430 ~~~~g~~~~A~~~l~rAl~L~ps~ 453 (517)
T PRK10153 430 ALVKGKTDEAYQAINKAIDLEMSW 453 (517)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCH
Confidence 778888888888888888888853
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=89.22 E-value=3 Score=35.11 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176 29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
-++.+++.+.+. ..+.-+.+....+|....+. .+|.+.|..++|..++. -+ ...++|....--..+++|.++||
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~--~~d~~~A~~Ife~glk~--f~-~~~~~~~~Y~~~l~~~~d~~~aR 90 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYC--NKDPKRARKIFERGLKK--FP-SDPDFWLEYLDFLIKLNDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT--CS-HHHHHHHHHHHHHH--HT-T-HHHHHHHHHHHHHTT-HHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHhCcHHHHH
Confidence 356666666666 33344567777666665542 34566799999998886 23 34466655445556889999999
Q ss_pred HHHHHHHhhCCCcHHHHHH
Q 031176 108 QILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L 126 (164)
...++++..-|.+.+...|
T Consensus 91 ~lfer~i~~l~~~~~~~~i 109 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKI 109 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHH
T ss_pred HHHHHHHHhcCchhHHHHH
Confidence 9999999998888864433
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=89.20 E-value=2.5 Score=41.89 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+..+.|.+|-|+= +-+..++++..++.+++- +| +.-.++-++|-.|... |.++|+++..++++..=+++|...
T Consensus 115 ~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~--D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~ 187 (906)
T PRK14720 115 NKLALRTLAEAYA---KLNENKKLKGVWERLVKA--DR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG 187 (906)
T ss_pred hhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc--Cc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence 4568899999988 667888999999999996 45 4459999999999999 999999999999999888889888
Q ss_pred HHHHHHhHhhh
Q 031176 126 LKKTVEDRIAK 136 (164)
Q Consensus 126 L~~~Ie~~~~~ 136 (164)
.++..++-+.-
T Consensus 188 ~~e~W~k~~~~ 198 (906)
T PRK14720 188 IEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHhc
Confidence 88876665544
No 176
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.96 E-value=4.3 Score=31.87 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 33 CEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 33 ~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
+|+.|.. ...+...+..|-+|.+-- .-+++.+++.++..++.. +|.++ . |
T Consensus 58 Le~l~~~-~~~~~rRe~lyYLAvg~y---RlkeY~~s~~yvd~ll~~--e~~n~-Q-----------------a------ 107 (149)
T KOG3364|consen 58 LEDLLKS-AHPERRRECLYYLAVGHY---RLKEYSKSLRYVDALLET--EPNNR-Q-----------------A------ 107 (149)
T ss_pred HHHHhhh-cCcccchhhhhhhHHHHH---HHhhHHHHHHHHHHHHhh--CCCcH-H-----------------H------
Confidence 5777762 233346677777888877 567899999999999986 34332 2 1
Q ss_pred HHhhCCCcHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 031176 113 CLEIAPDWRQALGLKKTVEDRIAK-DGVIGIGITATAVGLIAGGIAAALA 161 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~~~Ie~~~~~-dGliG~~i~~~a~~~~~g~~~~a~~ 161 (164)
+.++ ..++..|.+.--. =+++| =+++++|+++|+++.++.
T Consensus 108 -~~Lk------~~ied~itkegliGm~v~g--Ga~~~v~gl~g~~~~~~~ 148 (149)
T KOG3364|consen 108 -LELK------ETIEDKITKEGLIGMVVVG--GAALAVGGLAGIASLAMR 148 (149)
T ss_pred -HHHH------HHHHHHHhhcceeeeeehh--hHHHHHHHHHHHHHHHhc
Confidence 1111 2345556555433 34444 333356788888888765
No 177
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=13 Score=32.31 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH-
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL- 124 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~- 124 (164)
......||+-|++ ..+++-+.++.-.++++. .+...-++|--|-+|.-.=+-.+|+.=...+|+++|.-.-+.
T Consensus 229 ~tpLllNy~QC~L---~~~e~yevleh~seiL~~---~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 229 ITPLLLNYCQCLL---KKEEYYEVLEHCSEILRH---HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hhHHHHhHHHHHh---hHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 4677899999999 899999999999999986 345678999999999999999999999999999999854332
Q ss_pred HHHHHHHhHhh
Q 031176 125 GLKKTVEDRIA 135 (164)
Q Consensus 125 ~L~~~Ie~~~~ 135 (164)
.=.+.++++++
T Consensus 303 rElr~le~r~~ 313 (329)
T KOG0545|consen 303 RELRLLENRMA 313 (329)
T ss_pred HHHHHHHHHHH
Confidence 22234444443
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=87.73 E-value=4.6 Score=33.73 Aligned_cols=84 Identities=24% Similarity=0.291 Sum_probs=59.0
Q ss_pred HHHHHHH---hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 34 EREVAEA---NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 34 e~~y~~~---~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
++.|.+. -...++.+-.+.+|.+|. ..++..++..+.++.+.. --.+.---+--||-+.+.++++..|..-.
T Consensus 73 ~R~~Rea~~~~~~ApTvqnr~rLa~al~---elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 73 ERHLREATEELAIAPTVQNRYRLANALA---ELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred hHHHHHHHHHHhhchhHHHHHHHHHHHH---HhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5666666 334567788888888888 777888888888887763 11222345566667777788888888888
Q ss_pred HHHHhhCCCcHH
Q 031176 111 EQCLEIAPDWRQ 122 (164)
Q Consensus 111 ~~lL~~eP~n~Q 122 (164)
+.+.+-.|..++
T Consensus 148 e~l~e~~pa~r~ 159 (251)
T COG4700 148 EDLMEYNPAFRS 159 (251)
T ss_pred HHHhhcCCccCC
Confidence 888888877665
No 179
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.58 E-value=2 Score=40.05 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 50 IMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+...|-.++ +.++-++++..|.....- +|.+ .|.+|+-+..++-+++|++|..=.+.+.+++|+|-
T Consensus 363 yI~~a~~y~---d~~~~~~~~~~F~~A~~l--dp~n-~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 363 YIKRAAAYA---DENQSEKMWKDFNKAEDL--DPEN-PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HHHHHHHHh---hhhccHHHHHHHHHHHhc--CCCC-CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 333444445 555555666666665543 3433 37777777777777777777777777777777764
No 180
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=3.6 Score=39.01 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=60.5
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC------CCC------CchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS------SPP------LQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~------~~~------~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+.+.+..||-|+.++ ..+++..|+++|+..++.- ++. .+..-|.-.||.++-.+|+-.+|...+.
T Consensus 172 e~syel~yN~Ac~~i---~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 172 EDSYELLYNTACILI---ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred cchHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 347889999999999 8999999999998872110 111 1223466789999999999999999999
Q ss_pred HHHhhCCCcHH
Q 031176 112 QCLEIAPDWRQ 122 (164)
Q Consensus 112 ~lL~~eP~n~Q 122 (164)
.+++..|-+.-
T Consensus 249 ~~i~~~~~D~~ 259 (652)
T KOG2376|consen 249 DIIKRNPADEP 259 (652)
T ss_pred HHHHhcCCCch
Confidence 99999998873
No 181
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.02 E-value=3.9 Score=36.96 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=62.5
Q ss_pred CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH----hhh
Q 031176 61 RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR----IAK 136 (164)
Q Consensus 61 ~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~----~~~ 136 (164)
+..++.-+||.-..+.|.. .++..+.|---|-+|.-...|+.|..-++.+++++|+|+++++=++...+. -+|
T Consensus 318 ~~d~~~~eAiqqC~evL~~---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kR 394 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDI---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKR 394 (504)
T ss_pred cccCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 3456778999999998885 345569999999999999999999999999999999999887655444332 234
Q ss_pred hhHHHHHH
Q 031176 137 DGVIGIGI 144 (164)
Q Consensus 137 dGliG~~i 144 (164)
|-+.=+|+
T Consensus 395 DYYKILGV 402 (504)
T KOG0624|consen 395 DYYKILGV 402 (504)
T ss_pred hHHHHhhh
Confidence 66653443
No 182
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=86.86 E-value=3.9 Score=39.63 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=64.6
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.-.+-..++-|++.++-+ +-.+.+.+++-+...+.- +| +.++.|.+|+-+|.++++-.+|.+....+|+.+-+|
T Consensus 513 ~~nplq~~~wf~~G~~AL---qlek~q~av~aF~rcvtL--~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 513 EINPLQLGTWFGLGCAAL---QLEKEQAAVKAFHRCVTL--EP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred hcCccchhHHHhccHHHH---HHhhhHHHHHHHHHHhhc--CC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 334457899999999999 888999999999888874 45 667999999999999999999999999999988665
Q ss_pred H
Q 031176 121 R 121 (164)
Q Consensus 121 ~ 121 (164)
-
T Consensus 587 w 587 (777)
T KOG1128|consen 587 W 587 (777)
T ss_pred C
Confidence 4
No 183
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=86.65 E-value=9.9 Score=34.56 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176 29 IIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 29 ~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
.+..+++.......-. +..+-|.+--+-+ ....+++++||+.++..+... .=+.-.+=|+|-++..|.-+.||++|.
T Consensus 248 ~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~-~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY-PNSALFLFFEGRL-ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHH-HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3444555554442211 1233344433333 125777888888888655421 112334567788888888888888888
Q ss_pred HHHHHHHhh
Q 031176 108 QILEQCLEI 116 (164)
Q Consensus 108 ~~~~~lL~~ 116 (164)
+++..+++.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 888777775
No 184
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.58 E-value=1.4 Score=24.03 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
++.|++|++.. ..++..+|++.++.++..
T Consensus 1 ~a~~~~a~~~~---~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYY---KLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHH---HHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH---HccCHHHHHHHHHHHHHH
Confidence 57899999999 578999999999999885
No 185
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=5.8 Score=35.44 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 62 QAEDVQRGIAMLEASLANSS-PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~-~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
....++.|++...+-++... ||.-.--|+.+-|-+++-+|+|..|++=|.++|+.+|.+-
T Consensus 93 K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 93 KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 34455666666666555432 2322233444666777777777777777777777777664
No 186
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.14 E-value=13 Score=29.43 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
-+..++..+--+|..| ..++..+|+.+|+++... ++..--|=-.+|++.+-++|.+ =+.|.+.+|+-.| |++
T Consensus 40 RP~~~e~~~~~~~l~i---~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~ 111 (160)
T PF09613_consen 40 RPEFPELDLFDGWLHI---VRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPD 111 (160)
T ss_pred CCCchHHHHHHHHHHH---HhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChH
Confidence 3457788888889888 777888899999886654 4455567778888888888865 4677788888776 777
Q ss_pred HHHHHHHHHhH
Q 031176 123 ALGLKKTVEDR 133 (164)
Q Consensus 123 a~~L~~~Ie~~ 133 (164)
+..|-+.+...
T Consensus 112 a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 112 ARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHh
Confidence 77776666554
No 187
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=85.09 E-value=7.3 Score=36.53 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
..++++.|...++.++.. +|. ....+..|+-+|.+.|++++|.+..+.+-+.
T Consensus 506 ~~g~~~~a~~~~~~l~~~--~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGM--GPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HcCCcHHHHHHHHHHhCC--CCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 456778888888887764 343 3356778888899999999999998888755
No 188
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=85.02 E-value=15 Score=32.90 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
++..+++++|...+.. +| .-..+-..|+-.+...|+|..|.+.++++++.+|+
T Consensus 194 ~~~d~A~~~l~kAlqa--~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 194 SDVDRARELLKKALQA--DK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred hhHHHHHHHHHHHHhh--Cc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 3444455555554442 22 22233334455555555555555555555555554
No 189
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=84.88 E-value=5.6 Score=37.71 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=63.6
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. ..-+......-|+|-+|++-.=.+|.-.|+.--...++- +| ..--++|+||-+...++.|.+|+.+...+
T Consensus 395 ~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--n~-s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 395 SHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--NP-SIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--Ch-HHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 344444 333345567778888888777677777676666665653 34 44488999999999999999999999999
Q ss_pred HhhCCCcHHHHH
Q 031176 114 LEIAPDWRQALG 125 (164)
Q Consensus 114 L~~eP~n~Qa~~ 125 (164)
-...|.|.--+.
T Consensus 472 q~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 472 QMSFPTDVARQN 483 (758)
T ss_pred hhcCchhhhhhh
Confidence 999996554333
No 190
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=84.82 E-value=5.4 Score=35.62 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
-+.+.+|-..+ ..+-+.+|-.++..|+.. |.....++=.|...|-+.+|.++|....+++.++.|++.+..
T Consensus 108 lAl~qL~~Dym---~aGl~DRAE~~f~~L~de---~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 108 LALQQLGRDYM---AAGLLDRAEDIFNQLVDE---GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred HHHHHHHHHHH---HhhhhhHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 44555666666 455677777777777764 667778888999999999999999999999999988877543
No 191
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.80 E-value=9.8 Score=26.62 Aligned_cols=68 Identities=26% Similarity=0.480 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH-HHHhhcchHHHHHHHHHHHhhCCC
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV-GYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl-g~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
.....+..+.... ...+...+++.++..+.. .+ .......+... .++..+++++|..++++++...|.
T Consensus 94 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (291)
T COG0457 94 LAEALLNLGLLLE---ALGKYEEALELLEKALAL--DP-DPDLAEALLALGALYELGDYEEALELYEKALELDPE 162 (291)
T ss_pred hHHHHHHHHHHHH---HHhhHHHHHHHHHHHHcC--CC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3444445444444 444567788888877764 12 22345555555 788888888888888888887773
No 192
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=9.4 Score=28.34 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH-----------HHHHHh
Q 031176 64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL-----------KKTVED 132 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L-----------~~~Ie~ 132 (164)
.+++.=+.=+|++++.++++. -.+|++++.-++.+|+-- +.+...+ -..-++
T Consensus 15 ~el~~L~d~lEevL~ssg~~a---------------~~e~~~lR~r~~~~Lk~~--r~rl~~~~d~v~~~sk~a~~~tD~ 77 (104)
T COG4575 15 AELQELLDTLEEVLKSSGSLA---------------GDEAEELRSKAESALKEA--RDRLGDTGDAVVQRSKAAADATDD 77 (104)
T ss_pred HHHHHHHHHHHHHHHhcccch---------------hhHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345555556667776644432 235666666666666532 1122222 122233
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHH
Q 031176 133 RIAKDGVIGIGITATAVGLIAGG 155 (164)
Q Consensus 133 ~~~~dGliG~~i~~~a~~~~~g~ 155 (164)
.+...=+-|+||+| ++|+++|.
T Consensus 78 yV~e~PWq~VGvaA-aVGlllGl 99 (104)
T COG4575 78 YVRENPWQGVGVAA-AVGLLLGL 99 (104)
T ss_pred HHHcCCchHHHHHH-HHHHHHHH
Confidence 34445566777776 45777764
No 193
>PF13830 DUF4192: Domain of unknown function (DUF4192)
Probab=84.32 E-value=5.7 Score=34.09 Aligned_cols=70 Identities=24% Similarity=0.240 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
.+-..+.+++..+.+. -.+..+-+.+-.+|+.+|..|+=..|.-+++++|+.+|+++=+.-|.+.+..-+
T Consensus 252 ~~a~~a~~lw~~~~r~-~~~~~ra~~l~l~a~~a~~~g~g~~A~~al~~a~~~~p~~~la~ll~~~l~~g~ 321 (324)
T PF13830_consen 252 EHAQAAERLWRALARR-LPGPWRAAALALLAWAAWLRGDGALAGVALDRALEADPDHSLAQLLDQALQAGL 321 (324)
T ss_pred ccchHHHHHHHHHHHh-cCCccchHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCcHHHHHHHHHHcCC
Confidence 3445688889888887 445567799999999999999999999999999999999999998888876543
No 194
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.84 E-value=4.2 Score=28.36 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|.+|....-++++..|++.+-.-.++.|.+-+.|
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 3455556778889999999999999999887776
No 195
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=83.83 E-value=6.6 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=25.9
Q ss_pred chHHHHHHHHH--HHHhhcchHHHHHHHHHHHh
Q 031176 85 QQREKLYLLAV--GYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 85 ~~rd~lY~LAl--g~~kl~~Y~~A~~~~~~lL~ 115 (164)
.+||+...|-+ |+..+|+|++|.+|++.+.+
T Consensus 19 ~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 19 QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67899988776 67899999999999998865
No 196
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.73 E-value=6.7 Score=33.49 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=34.1
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+...+.+.||++=+..-|||+-|....+.+|+++|.+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 35569999999999999999999999999999999876
No 197
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.13 E-value=4.4 Score=28.03 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|.+|+.++..+++.+|+...-..+++.|.+.+.|
T Consensus 29 Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~R 62 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDR 62 (77)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 4566777888899999998888888888887766
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.86 E-value=17 Score=33.42 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=72.5
Q ss_pred HHHHHHHH-hcCCC----chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176 33 CEREVAEA-NDDKQ----KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 33 ~e~~y~~~-~~~~~----s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
.+..|-+. ..++. +...+.|.|-..+ ..+..++||.-.+..+.- ++ .--..+---|-+|.-++++++|.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~---rLgrl~eaisdc~~Al~i--D~-syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNI---RLGRLREAISDCNEALKI--DS-SYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhc---ccCCchhhhhhhhhhhhc--CH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 22322 3344455555444 477788899998888885 33 33467777899999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhH---hhhhhHHHHHHH
Q 031176 108 QILEQCLEIAPDWRQALGLKKTVEDR---IAKDGVIGIGIT 145 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L~~~Ie~~---~~~dGliG~~i~ 145 (164)
++++.+++.+-+..--++|++....- -.+|-+.=+||.
T Consensus 342 ~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~ 382 (486)
T KOG0550|consen 342 EDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGIS 382 (486)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhh
Confidence 99999999998866666666665442 244666555554
No 199
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.73 E-value=7.8 Score=25.59 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|.+|..++..+++.+|+.++-..|++.+..-+.|
T Consensus 28 Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~R 61 (69)
T PF04212_consen 28 YKEAIEYLMQALKSESNPERRQALRQKMKEYLER 61 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4566777888999999888888899998887776
No 200
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.63 E-value=17 Score=28.45 Aligned_cols=64 Identities=19% Similarity=0.130 Sum_probs=52.3
Q ss_pred hcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 59 HSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 59 ~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
.+.++.....-++..++.++. .| + .+.+..++..+..+|+.++|++..+++...-|.++-.+.+
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~--~P-~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRR--RP-D-PNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHh--CC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 567788888899999998885 23 2 3667778999999999999999999999999966655544
No 201
>PLN03218 maturation of RBCL 1; Provisional
Probab=82.47 E-value=31 Score=34.88 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHH-hcC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176 29 IIAGCEREVAEA-NDD-KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS 106 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~-~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A 106 (164)
.+..+.+.+.+. ..+ .++..+.-.+..++. +.+++++|++++++.... +-.++ ...|..|--+|.+.|++++|
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~---k~G~~eeA~~lf~eM~~~-g~~Pd-vvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACS---NAKNWKKALELYEDIKSI-KLRPT-VSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 334444444444 233 344555555555555 455667777777775543 21222 35666777777777777777
Q ss_pred HHHHHHHHh--hCCCcHHHHHH
Q 031176 107 RQILEQCLE--IAPDWRQALGL 126 (164)
Q Consensus 107 ~~~~~~lL~--~eP~n~Qa~~L 126 (164)
.++++.+.+ +.|+..-+..|
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHH
Confidence 777777664 45665444333
No 202
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.72 E-value=11 Score=25.45 Aligned_cols=34 Identities=6% Similarity=0.219 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|.+|..++-.+++.+|+...-..+++.+...+.|
T Consensus 29 Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~R 62 (75)
T cd02678 29 YQHALEYFMHALKYEKNPKSKESIRAKCTEYLDR 62 (75)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 5567777888889999887778888888877766
No 203
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.34 E-value=5.2 Score=36.87 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=74.5
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.+=..|.+. .-++......=+-|.+.+ ..++...|+.=+...++. +| ..--|+|.=|.++.++++|.+|+.-.
T Consensus 22 ~avdlysKaI~ldpnca~~~anRa~a~l---K~e~~~~Al~Da~kaie~--dP-~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 22 VAVDLYSKAIELDPNCAIYFANRALAHL---KVESFGGALHDALKAIEL--DP-TYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred HHHHHHHHHHhcCCcceeeechhhhhhe---eechhhhHHHHHHhhhhc--Cc-hhhheeeeccHHHHhHHHHHHHHHHH
Confidence 334456665 223222222223355666 566777788777777775 34 55588889999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHhHhhhhh
Q 031176 111 EQCLEIAPDWRQALGLKKTVEDRIAKDG 138 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~~~Ie~~~~~dG 138 (164)
+....+.|+.++++..-.+.+..+++.+
T Consensus 96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 96 EKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988877744
No 204
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.32 E-value=3.2 Score=38.96 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhCC--CcHHHHHHHHHHHhHhh
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAP--DWRQALGLKKTVEDRIA 135 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP--~n~Qa~~L~~~Ie~~~~ 135 (164)
-+|+||.++.-.++|++|+.++..+..+-| -|.||..|...|+=.+-
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G 669 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLG 669 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcC
Confidence 459999999999999999999999998888 79999999999876543
No 205
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.15 E-value=15 Score=30.36 Aligned_cols=58 Identities=24% Similarity=0.216 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHHHHHhhcchHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP-LQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~-~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
+++.+|.+|-=.+ ..|-.+++.+|...+.-.... .-..|-+..||-.|+++++|+.|-
T Consensus 140 t~elq~aLAtyY~----krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT----KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5666666665555 456678888888877742211 234588999999999999999873
No 206
>PRK10132 hypothetical protein; Provisional
Probab=80.78 E-value=20 Score=26.51 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=23.9
Q ss_pred HHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031176 124 LGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIAAALARKK 164 (164)
Q Consensus 124 ~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g~~~~a~~r~~ 164 (164)
+.--...++.+...=+.++||+++ ||.++|.+ ++|||
T Consensus 72 ~~a~~~~~~~V~~~Pw~svgiaag-vG~llG~L---l~RR~ 108 (108)
T PRK10132 72 RDAVGCADTFVRERPWCSVGTAAA-VGIFIGAL---LSLRK 108 (108)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHH---HhccC
Confidence 333334455677778888888874 67777653 55664
No 207
>PRK10941 hypothetical protein; Provisional
Probab=80.26 E-value=2.8 Score=35.73 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
-+-+|=.+|.+.++|++|+++++++|.+.|++.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~ 216 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY 216 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH
Confidence 3457778899999999999999999999999884
No 208
>PLN03218 maturation of RBCL 1; Provisional
Probab=80.21 E-value=35 Score=34.50 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=30.9
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh--hCCC
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE--IAPD 119 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~--~eP~ 119 (164)
+.+++++|.+++++..+. +-+++ ...+..|--+|.+.|++++|++.++.+.+ +.|+
T Consensus 661 k~G~~eeA~~l~~eM~k~-G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQ-GIKLG-TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred hCCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 344566666666665554 22222 24555566666666666666666666644 3454
No 209
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=80.21 E-value=27 Score=33.69 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHH--------hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176 24 WCDRDIIAGCEREVAEA--------NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV 95 (164)
Q Consensus 24 ~~~~~~l~~~e~~y~~~--------~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl 95 (164)
|--.--+.+-+++|.+. ..++.+.+....+|..-+ +-++.+--.+-=..++.. .+.+|..|.-+|+
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~---QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI---QMRDYEGYLETRNQLLQL---RPSQRASWIGFAV 151 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHH
Confidence 33344567777787777 335666677777776666 444444333333333432 4577899999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhC---CCcHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIA---PDWRQ 122 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~e---P~n~Q 122 (164)
++.-+|+|..|...++..-+.. |+..-
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 9999999999999998888877 65543
No 210
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.85 E-value=9.8 Score=30.04 Aligned_cols=86 Identities=9% Similarity=0.139 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHH-hc-C-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176 28 DIIAGCEREVAEA-ND-D-KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 28 ~~l~~~e~~y~~~-~~-~-~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~ 104 (164)
+++.++|.+.... +| + ++...+...+|--.. +.+|...|++.+.........+.+.-|.+..+--..+-.+|+.
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~---~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYC---KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 4566666666665 22 2 223455566666666 6667777777777755554455566676666666677777777
Q ss_pred HHHHHHHHHHhh
Q 031176 105 KSRQILEQCLEI 116 (164)
Q Consensus 105 ~A~~~~~~lL~~ 116 (164)
....+++++-.+
T Consensus 91 ~v~~~i~ka~~~ 102 (177)
T PF10602_consen 91 HVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHH
Confidence 777776655443
No 211
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.70 E-value=17 Score=34.74 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHH-hcCC-Cch-HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHH
Q 031176 29 IIAGCEREVAEA-NDDK-QKS-ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAK 105 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~~-~s~-~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~ 105 (164)
.+.+++..+.-. .++. .+. .-.|.-|||+- +.+...+++..+.- +.. ..+-.+-.-|...||+++|++
T Consensus 58 q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y---rlnk~Dealk~~~~-~~~-----~~~~ll~L~AQvlYrl~~yde 128 (652)
T KOG2376|consen 58 QLDKYEDALKLIKKNGALLVINSFFFEKAYCEY---RLNKLDEALKTLKG-LDR-----LDDKLLELRAQVLYRLERYDE 128 (652)
T ss_pred hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH---HcccHHHHHHHHhc-ccc-----cchHHHHHHHHHHHHHhhHHH
Confidence 344566666222 3332 222 22289999999 66677788888762 332 224577788999999999999
Q ss_pred HHHHHHHHHhhCCCcHHH
Q 031176 106 SRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 106 A~~~~~~lL~~eP~n~Qa 123 (164)
|+..++-+++..-++...
T Consensus 129 aldiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 129 ALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred HHHHHHHHHhcCCchHHH
Confidence 999999999988666543
No 212
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.53 E-value=7.3 Score=33.78 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhhCCCCCC---------chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 64 EDVQRGIAMLEASLANSSPPL---------QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~---------~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
..+++||-.|+.|.-+ +.|- .....+-+.+..+.+.++|-++++.|..+|+.+|.|-.|.--
T Consensus 199 ~~YreAi~~l~~L~lk-EkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~fr 269 (329)
T KOG0545|consen 199 SKYREAIICLRNLQLK-EKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFR 269 (329)
T ss_pred HHHHHHHHHHHHHHhc-cCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3577889999887765 2331 223456788999999999999999999999999999876543
No 213
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.32 E-value=16 Score=32.70 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+...++|-|-|-. .-++++.+|.-....+.. +|.+ --|+|=-|.+++.+..+..|.+.|+..|+++-++.-+.+
T Consensus 118 navLY~NRAAa~~---~l~NyRs~l~Dcs~al~~--~P~h-~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 118 NAVLYTNRAAAQL---YLGNYRSALNDCSAALKL--KPTH-LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred HHHHHhhHHHHHH---HHHHHHHHHHHHHHHHhc--Ccch-hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4667777777777 678888898888887774 4544 489999999999999999999999999999999999999
Q ss_pred HHHHH
Q 031176 126 LKKTV 130 (164)
Q Consensus 126 L~~~I 130 (164)
|..+|
T Consensus 192 l~~l~ 196 (390)
T KOG0551|consen 192 LRNLI 196 (390)
T ss_pred HHhhc
Confidence 88655
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=78.91 E-value=8.8 Score=34.89 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH---HHHHHhhCCCcHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI---LEQCLEIAPDWRQ 122 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~---~~~lL~~eP~n~Q 122 (164)
..-..|+++|+++ -..+.++|.+.+..+.+. +.-.+-=|.|..|..+..+++.+.+... +..+++.-|+..+
T Consensus 304 ~~l~~~El~w~~~---~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 304 HHLCYFELAWCHM---FQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHHH---HHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 3567899999999 888999999999998885 3445667778889999999999333333 3333444455444
No 215
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.89 E-value=19 Score=31.16 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH--HHHh---hcchHHHHHHHHHHHhhCCCc
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV--GYYR---TGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl--g~~k---l~~Y~~A~~~~~~lL~~eP~n 120 (164)
.+++=-.+|--.+ ..++..+|+..+|+++-. .| ...+|+..+ .+|= ..++.-|++|+.+.|++.|.|
T Consensus 153 D~EAW~eLaeiY~---~~~~f~kA~fClEE~ll~--~P---~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 153 DQEAWHELAEIYL---SEGDFEKAAFCLEELLLI--QP---FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cHHHHHHHHHHHH---hHhHHHHHHHHHHHHHHc--CC---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 3466666666777 789999999999998885 35 333333332 2332 458999999999999999976
Q ss_pred HHH
Q 031176 121 RQA 123 (164)
Q Consensus 121 ~Qa 123 (164)
.-+
T Consensus 225 ~ra 227 (289)
T KOG3060|consen 225 LRA 227 (289)
T ss_pred HHH
Confidence 644
No 216
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.59 E-value=4.9 Score=36.53 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=55.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+++..++..=.|+|-. .-+|+++|.+..+.+..+ .+ -..+.+-|||..++=+|.|.+|....+. .|.++-
T Consensus 53 ~EEE~~~~lWia~C~f---hLgdY~~Al~~Y~~~~~~-~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL 122 (557)
T KOG3785|consen 53 REEEDSLQLWIAHCYF---HLGDYEEALNVYTFLMNK-DD--APAELGVNLACCKFYLGQYIEAKSIAEK----APKTPL 122 (557)
T ss_pred hhhhHHHHHHHHHHHH---hhccHHHHHHHHHHHhcc-CC--CCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChH
Confidence 3445577777788888 677899999999887775 22 3468888999999999999998776554 588774
Q ss_pred HHHH
Q 031176 123 ALGL 126 (164)
Q Consensus 123 a~~L 126 (164)
-+.|
T Consensus 123 ~~RL 126 (557)
T KOG3785|consen 123 CIRL 126 (557)
T ss_pred HHHH
Confidence 4433
No 217
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.59 E-value=1.9 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=21.5
Q ss_pred HHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 031176 38 AEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGI 70 (164)
Q Consensus 38 ~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi 70 (164)
.+. ..++.++++.++||+.+. ..++.++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~---~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYL---NQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHH---HCcCHHhhc
Confidence 344 446678999999999999 455555554
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=78.57 E-value=8 Score=36.13 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHhhcchHHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL-QQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~-~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
-++.++|.|+- +.+..++||+++.++++. .|. +.-...|+|.-.+..++.|.++...
T Consensus 260 y~KrRLAmCar---klGr~~EAIk~~rdLlke--~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 260 YAKRRLAMCAR---KLGRLREAIKMFRDLLKE--FPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhHHHHHHHHH---HhCChHHHHHHHHHHHhh--CCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 34566666666 566667777777777764 222 2334667777777777777766544
No 219
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.34 E-value=22 Score=28.04 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
...|+.+.-+|--|++.||+++|++++.++..--..
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 344555555555555555555555555554444333
No 220
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.32 E-value=24 Score=29.13 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
.-++.+-||.|| +.+-+..-...+|.|--. ++| .++-+-=-|+++.||-|+|.+|++..+++-.
T Consensus 132 d~ARlraa~lLv---D~gsy~dV~srvepLa~d-~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 DLARLRAAYLLV---DNGSYDDVSSRVEPLAGD-GNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHh---ccccHHHHHHHhhhccCC-CCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345677899999 777777777888886554 444 5556667789999999999999999988876
No 221
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=78.24 E-value=4.7 Score=40.59 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc-hHHHHHHHHHHHhhCCCcH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE-YAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~-Y~~A~~~~~~lL~~eP~n~ 121 (164)
..+++++|+..+..++. +| +.-.++.+|+++++-++. -++|.+.+-.+-+++|+|-
T Consensus 15 nk~YeealEqskkvLk~--dp-dNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnl 71 (1238)
T KOG1127|consen 15 NKEYEEALEQSKKVLKE--DP-DNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNL 71 (1238)
T ss_pred hccHHHHHHHHHHHHhc--CC-CcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhh
Confidence 56788899999998885 34 445888999999999888 9999999999999999886
No 222
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.97 E-value=19 Score=30.66 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=58.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH-HHHHHHHHHhH
Q 031176 55 WALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ-ALGLKKTVEDR 133 (164)
Q Consensus 55 ~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q-a~~L~~~Ie~~ 133 (164)
-.|+ +...+.++|.+.++-++. .|.+ ..|--+|=--++-.|+|++|+.-++.+=+++|+..+ +..-+..|...
T Consensus 9 seLL---~~~sL~dai~~a~~qVka--kPtd-a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 9 SELL---DDNSLQDAIGLARDQVKA--KPTD-AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHH---HhccHHHHHHHHHHHHhc--CCcc-ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3567 455678899999999996 3433 244444445577789999999999999999999765 45556677777
Q ss_pred hhhhhHH
Q 031176 134 IAKDGVI 140 (164)
Q Consensus 134 ~~~dGli 140 (164)
+.|+-+.
T Consensus 83 a~R~evf 89 (273)
T COG4455 83 AARNEVF 89 (273)
T ss_pred HHHHHHh
Confidence 7776554
No 223
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=77.72 E-value=25 Score=33.02 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.|--|.-++.+.|+++.|+...+.+++++|++.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 455566677788888888888888888888763
No 224
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.66 E-value=14 Score=34.53 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=57.9
Q ss_pred HHHHHhcCChh--HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 54 SWALVHSRQAE--DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 54 A~aLi~S~~~~--d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
||.|+.+..-. +...||+--+-.+.- +| ....+||-|+.+|.=++=..-|+-|+++++++.|+++..-.-.-.+-
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDI--NP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY 442 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhc--Cc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 78888553322 445678877777774 34 45578999999999999999999999999999999996554444433
Q ss_pred hH
Q 031176 132 DR 133 (164)
Q Consensus 132 ~~ 133 (164)
.+
T Consensus 443 ~k 444 (559)
T KOG1155|consen 443 EK 444 (559)
T ss_pred HH
Confidence 33
No 225
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=77.18 E-value=6.8 Score=35.66 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
..||.++|..|-.+++++|++.|...+++.-++.+.
T Consensus 309 ~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~ 344 (422)
T PF06957_consen 309 QAFKLKNFITAASFARRLLELNPSPEVAEQARKILQ 344 (422)
T ss_dssp HCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 468999999999999999999999876555555444
No 226
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.10 E-value=41 Score=31.18 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=80.1
Q ss_pred hcccccCCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHH
Q 031176 12 IGSFFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLY 91 (164)
Q Consensus 12 ~~~~~~~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY 91 (164)
++..+-.+..+++. +....=..|.. ......++++|+++.+........|+++|.+++...... + .-++.|
T Consensus 294 lg~~Y~~g~~~~~~---d~~~A~~~~~~-aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G----~~~A~~ 364 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKI---DYEKALKLYTK-AAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-G----HILAIY 364 (552)
T ss_pred HHHHHhcCCCCccc---cHHHHHHHHHH-HHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-C----ChHHHH
Confidence 45555566666665 22333334444 333347899999999999777457999999999887765 3 349999
Q ss_pred HHHHHHHhh----cchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 92 LLAVGYYRT----GEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 92 ~LAlg~~kl----~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
+||+.|..- .+..+|..+..++=+.. +.+|..+...+..-.
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYG 409 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHc
Confidence 999988764 68999999999999888 667666666655443
No 227
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.75 E-value=19 Score=24.00 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
....+|++++...+..+ . .--|--|+-+ |.+|.+++..+++.+|+...-..++..+.+.+.+
T Consensus 3 ~~~~~A~~li~~Av~~d--~----~g~~~eAl~~-----Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~r 64 (77)
T smart00745 3 DYLSKAKELISKALKAD--E----AGDYEEALEL-----YKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDR 64 (77)
T ss_pred cHHHHHHHHHHHHHHHH--H----cCCHHHHHHH-----HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 34566777776655531 1 1112223322 4567777888899999877777777777776655
No 228
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.35 E-value=20 Score=33.73 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.+|+.++.+...+.+.. +..-.++||++++.+-++|+.++|+.|.-.+-.+--+|-
T Consensus 503 ngd~dka~~~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred cCcHHHHHHHHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence 45666666666666654 234456666666666666666666666444444433333
No 229
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=76.34 E-value=53 Score=29.80 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 34 EREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 34 e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
|+...+..+..+.+...+..|---. .+.+|..++=..|.+.-+..+++ .--..--.+-.....|||..|+.-++.+
T Consensus 104 Ekl~~rnae~~e~p~l~~l~aA~AA--~qrgd~~~an~yL~eaae~~~~~--~l~v~ltrarlll~~~d~~aA~~~v~~l 179 (400)
T COG3071 104 EKLLRRNAEHGEQPVLAYLLAAEAA--QQRGDEDRANRYLAEAAELAGDD--TLAVELTRARLLLNRRDYPAARENVDQL 179 (400)
T ss_pred HHHHHHhhhcCcchHHHHHHHHHHH--HhcccHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4444443333444444444433222 35677778888888866641222 1122233444566788999999999999
Q ss_pred HhhCCCcHHHHHHHHHH
Q 031176 114 LEIAPDWRQALGLKKTV 130 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~I 130 (164)
+++.|.|+++..|...+
T Consensus 180 l~~~pr~~~vlrLa~r~ 196 (400)
T COG3071 180 LEMTPRHPEVLRLALRA 196 (400)
T ss_pred HHhCcCChHHHHHHHHH
Confidence 99999999988876554
No 230
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.96 E-value=13 Score=30.86 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-------------------------------CCCCchHHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-------------------------------SPPLQQREKLYLLA 94 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-------------------------------~~~~~~rd~lY~LA 94 (164)
.+...+.+|-.|. ..++..+|+..|++++... .......++++.+|
T Consensus 183 ~~~v~~e~akllw---~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a 259 (352)
T PF02259_consen 183 LPRVFLEYAKLLW---AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLA 259 (352)
T ss_pred CcchHHHHHHHHH---HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHH
Confidence 5788888888888 5566788999998888710 01123345667777
Q ss_pred HHHHhh------cchHHHHHHHHHHHhhCCCcHHH
Q 031176 95 VGYYRT------GEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 95 lg~~kl------~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
--...+ ++++.+.+++..+.++.|++..+
T Consensus 260 ~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~ 294 (352)
T PF02259_consen 260 KWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA 294 (352)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHhChhHHHH
Confidence 666667 88899999999999999998873
No 231
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.70 E-value=63 Score=30.55 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC
Q 031176 19 GDQIPWCDRDIIAGCEREVAEANDDKQ--------------KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL 84 (164)
Q Consensus 19 ~~~lp~~~~~~l~~~e~~y~~~~~~~~--------------s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~ 84 (164)
.-.|--+||..|+++-..|-++...++ +.++.==+|--.+ +.+--+++|..||...-- .+
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi---dtqf~ekai~y~ekaali---qp 657 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI---DTQFSEKAINYFEKAALI---QP 657 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH---hhHHHHHHHHHHHHHHhc---Cc
Confidence 333444799999999999988622111 1122111222233 566778899999885443 23
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.+.---..+|-+.-|.|+|.+|...+...-+.-|+|-.-
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc 696 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC 696 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence 555666778888899999999999999999999998643
No 232
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.76 E-value=9.2 Score=32.29 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
.+.-|+-+-|.+..|++..+.|..-|-.++++.|.+..|..-+...-.++
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34566778899999999999999999999999999988876544444443
No 233
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.71 E-value=18 Score=25.54 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 27 RDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 27 ~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
..++..+++.... ++.+.+++|.+|-.++ ..++++.|++.|-+++..
T Consensus 5 ~~~~~al~~~~a~---~P~D~~ar~~lA~~~~---~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 5 APDIAALEAALAA---NPDDLDARYALADALL---AAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHH---STT-HHHHHHHHHHHH---HTT-HHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHc---CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh
Confidence 3456666665553 4457799999999999 788999999999999996
No 234
>PRK00523 hypothetical protein; Provisional
Probab=73.97 E-value=5.5 Score=27.69 Aligned_cols=7 Identities=29% Similarity=0.748 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 031176 139 VIGIGIT 145 (164)
Q Consensus 139 liG~~i~ 145 (164)
.+|++|+
T Consensus 3 ~~~l~I~ 9 (72)
T PRK00523 3 AIGLALG 9 (72)
T ss_pred hHHHHHH
Confidence 3444443
No 235
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.94 E-value=8 Score=36.56 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHHHHhhC--CCCCC--chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 62 QAEDVQRGIAMLEASLAN--SSPPL--QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~--~~~~~--~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
..++..+|+..|+..+.. +..+. .-..-+-+|+-++-|++.|++|+.+.+++|.+.|.|..+-+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH
Confidence 466778888888876621 01111 12344789999999999999999999999999999987654
No 236
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=73.48 E-value=12 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|..|..++..+++.+|+...-..|++.+...+.|
T Consensus 29 Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~R 62 (75)
T cd02656 29 YKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDR 62 (75)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4556666778888999887778888888887776
No 237
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=72.33 E-value=39 Score=31.46 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=60.4
Q ss_pred hcCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 41 NDDKQK-SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 41 ~~~~~s-~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
....|. ..+.-++|.... ..++.++|+.+.+..++.- .+...-..++-.+|+.|-.+++|.+|...++.+|
T Consensus 192 ~~~~P~~~~~~~~La~~y~---~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYA---VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred ccCCchHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333343 344445566666 6788888888888776630 1234566778889999999999999999999999
Q ss_pred hhC-----CCcHHHHHHHH
Q 031176 115 EIA-----PDWRQALGLKK 128 (164)
Q Consensus 115 ~~e-----P~n~Qa~~L~~ 128 (164)
++- |+|+.+.....
T Consensus 269 ~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHHHhcCCCCHHHHHHHH
Confidence 874 66776655544
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=72.13 E-value=11 Score=34.29 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHh--hCCCcH--HHHHHH
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLE--IAPDWR--QALGLK 127 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~--~eP~n~--Qa~~L~ 127 (164)
..++=.+|.+||++-++|+...|.+||+.+-+ ++-.|+ |++-+.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 34567789999999999999999999998754 455666 444443
No 239
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=71.57 E-value=65 Score=27.88 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=63.1
Q ss_pred CCCCCCCCCHH-HHHHHHHHHHHH---h----cC-CCchHHHHHHHHHHH----hcCChhHHHHHHHHHHHHhhCCCCCC
Q 031176 18 GGDQIPWCDRD-IIAGCEREVAEA---N----DD-KQKSESIMRLSWALV----HSRQAEDVQRGIAMLEASLANSSPPL 84 (164)
Q Consensus 18 ~~~~lp~~~~~-~l~~~e~~y~~~---~----~~-~~s~~~~F~yA~aLi----~S~~~~d~~~gi~lLe~ll~~~~~~~ 84 (164)
....+|..+.. ....+=+.|+.. . .+ .+.++....-+.+|+ .+.+...+-+|+.+||..+.+ +|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~--s~- 214 (365)
T PF09797_consen 138 LHFSLSSESLLDLAQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKK--SP- 214 (365)
T ss_pred ccccCChhhHHHHHHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHc--CC-
Confidence 33445543333 355566777777 2 11 223445555577777 367788999999999999986 34
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
...+....|...|..+|-.+.|...+
T Consensus 215 ~n~~~~LlLvrlY~~LG~~~~A~~~~ 240 (365)
T PF09797_consen 215 HNYQLKLLLVRLYSLLGAGSLALEHY 240 (365)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55589999999999999999998874
No 240
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=71.38 E-value=4.8 Score=23.71 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHHHhhCCCcHH
Q 031176 101 GEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 101 ~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+++++|+..+++.+.+.|+-..
T Consensus 1 kE~dRAR~IyeR~v~~hp~~k~ 22 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPEVKN 22 (32)
T ss_pred ChHHHHHHHHHHHHHhCCCchH
Confidence 4799999999999999998554
No 241
>PRK04841 transcriptional regulator MalT; Provisional
Probab=71.31 E-value=25 Score=33.58 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh---CCC---CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLA---NSS---PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~---~~~---~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+.....++|.+....+ ..++..+++.... ... ++....++...++..+...|+|++|..+++++|+..|.+
T Consensus 409 ~~l~~~~a~~~~~~g~---~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (903)
T PRK04841 409 PRLVLLQAWLAQSQHR---YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLT 485 (903)
T ss_pred cchHHHHHHHHHHCCC---HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 4455677888774443 4445555544332 100 122345677778888888999999999999988866654
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.23 E-value=28 Score=30.45 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=52.5
Q ss_pred cCCCchHHHHHHHHHHHhcCChhHHH-------------------HHHHHHHHHhhCC----------CCCCchHHHHHH
Q 031176 42 DDKQKSESIMRLSWALVHSRQAEDVQ-------------------RGIAMLEASLANS----------SPPLQQREKLYL 92 (164)
Q Consensus 42 ~~~~s~~~~F~yA~aLi~S~~~~d~~-------------------~gi~lLe~ll~~~----------~~~~~~rd~lY~ 92 (164)
....+.++.+.||.|++-..+....+ .-|++++..-... .+ ++..+.-|-
T Consensus 163 ~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad-Pdd~~aa~~ 241 (304)
T COG3118 163 AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD-PDDVEAALA 241 (304)
T ss_pred hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC-CCCHHHHHH
Confidence 34456899999999999554431110 1244444422211 22 455688999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
||..+--.|+++.|+...=.+|+.+-...
T Consensus 242 lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 242 LADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999998888888866543
No 243
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=70.03 E-value=65 Score=27.04 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCC--CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 33 CEREVAEANDDK--QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 33 ~e~~y~~~~~~~--~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.+.-|++..+|. ..+.....+|-+++ ..++--.+...||++.+.+ ...+.-|-+-.+|-.+.-+|.|..|+...
T Consensus 108 A~~hy~qalsG~fA~d~a~lLglA~Aqf---a~~~~A~a~~tLe~l~e~~-pa~r~pd~~Ll~aR~laa~g~~a~Aesaf 183 (251)
T COG4700 108 AVPHYQQALSGIFAHDAAMLLGLAQAQF---AIQEFAAAQQTLEDLMEYN-PAFRSPDGHLLFARTLAAQGKYADAESAF 183 (251)
T ss_pred hHHHHHHHhccccCCCHHHHHHHHHHHH---hhccHHHHHHHHHHHhhcC-CccCCCCchHHHHHHHHhcCCchhHHHHH
Confidence 355566664442 25677777888888 6777888999999998863 22344577888899999999999999999
Q ss_pred HHHHhhCCCcH
Q 031176 111 EQCLEIAPDWR 121 (164)
Q Consensus 111 ~~lL~~eP~n~ 121 (164)
+.++..-|+-+
T Consensus 184 e~a~~~ypg~~ 194 (251)
T COG4700 184 EVAISYYPGPQ 194 (251)
T ss_pred HHHHHhCCCHH
Confidence 99999888643
No 244
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.01 E-value=27 Score=28.76 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=40.1
Q ss_pred CChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 61 RQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 61 ~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
+..++-..-|++|+..... .+.....+.....+|--|++.|+|++|+++++.++..
T Consensus 149 ~~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 149 KGVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred cccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4456667778887764431 1223344556679999999999999999999998544
No 245
>PRK10404 hypothetical protein; Provisional
Probab=69.67 E-value=23 Score=25.92 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=17.2
Q ss_pred HHhHhhhhhHHHHHHHHHHHHHHHHH
Q 031176 130 VEDRIAKDGVIGIGITATAVGLIAGG 155 (164)
Q Consensus 130 Ie~~~~~dGliG~~i~~~a~~~~~g~ 155 (164)
-++.+...=+-++||+++ +|+++|.
T Consensus 72 td~yV~e~Pw~avGiaag-vGlllG~ 96 (101)
T PRK10404 72 ADDYVHEKPWQGIGVGAA-VGLVLGL 96 (101)
T ss_pred HHHHHHhCcHHHHHHHHH-HHHHHHH
Confidence 355666677888888764 5777764
No 246
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=69.58 E-value=16 Score=25.71 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHH
Q 031176 121 RQALGLKKTVEDRIAKDGVIGIGITATAVGLIAG 154 (164)
Q Consensus 121 ~Qa~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g 154 (164)
.++...-...++.|...=+..+||+++ +|.++|
T Consensus 56 ~~~~~~~~~~~~~V~e~P~~svgiAag-vG~llG 88 (94)
T PF05957_consen 56 EQAREAAEQTEDYVRENPWQSVGIAAG-VGFLLG 88 (94)
T ss_pred HHHHHHHHHHHHHHHHChHHHHHHHHH-HHHHHH
Confidence 455666667777777777777777764 355554
No 247
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=69.39 E-value=1.5 Score=34.91 Aligned_cols=30 Identities=33% Similarity=0.644 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHH-----HHHHHHHHHhhc
Q 031176 134 IAKDGVIGIGITATAVGL-----IAGGIAAALARK 163 (164)
Q Consensus 134 ~~~dGliG~~i~~~a~~~-----~~g~~~~a~~r~ 163 (164)
..|+||-.++++|.++|+ ++|||++++.||
T Consensus 121 ~ek~GL~T~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 121 VEKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp -----------------------------------
T ss_pred cccCCcceeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 678998887776555543 344455566654
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.28 E-value=62 Score=26.82 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
..-+.+++|-.++ +.+....|..+|...-.. . =..-.--.-+-.+...|+-.+||..++.+|+.+|++...+-
T Consensus 125 k~l~~lRLArvq~---q~~k~D~AL~~L~t~~~~---~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~ 197 (207)
T COG2976 125 KALAALRLARVQL---QQKKADAALKTLDTIKEE---S-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREI 197 (207)
T ss_pred HHHHHHHHHHHHH---HhhhHHHHHHHHhccccc---c-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHH
Confidence 3556778888888 777888888888663321 1 00011123345567889999999999999999988777666
Q ss_pred HHHHHH
Q 031176 126 LKKTVE 131 (164)
Q Consensus 126 L~~~Ie 131 (164)
|+=.+.
T Consensus 198 lqmKLn 203 (207)
T COG2976 198 LQMKLN 203 (207)
T ss_pred HHhHHH
Confidence 654443
No 249
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.13 E-value=20 Score=31.74 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
.--|-.|.+-|.|.+|.++++++|+++|-++|.-.+...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~ 321 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMA 321 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 345667888999999999999999999999987654433
No 250
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=68.91 E-value=8.5 Score=29.83 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
|+--||-+..++|+|++++...+..|.-
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 7778999999999999999999999864
No 251
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=68.30 E-value=9.8 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 94 AVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 94 Alg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
|..+++.|||-+|++.++.++...+++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555
No 252
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=67.74 E-value=20 Score=20.14 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=23.5
Q ss_pred hHHHHHHH--HHHHhcC--ChhHHHHHHHHHHHHhhC
Q 031176 47 SESIMRLS--WALVHSR--QAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 47 ~~~~F~yA--~aLi~S~--~~~d~~~gi~lLe~ll~~ 79 (164)
++++|+++ +.+.... .+.|.++|++.++.....
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 46778888 6666665 566888888888776553
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=67.67 E-value=38 Score=23.50 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
.......++.+. .......++..+...+.. .........++.++..+...++|..|...+...+...|.+.....+
T Consensus 59 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (291)
T COG0457 59 AGLLLLLALALL---KLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL 134 (291)
T ss_pred hHHHHHHHHHHH---HcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH
Confidence 566677777777 566677777777776641 1234667999999999999999999999999999999888443333
Q ss_pred HH
Q 031176 127 KK 128 (164)
Q Consensus 127 ~~ 128 (164)
..
T Consensus 135 ~~ 136 (291)
T COG0457 135 LA 136 (291)
T ss_pred HH
Confidence 33
No 254
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=67.24 E-value=33 Score=31.91 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
.+..|+.+.++-++- -..++++||.....-+... +|....-.+.|-|+.+|-.+|+.++|+.|.+..|++.
T Consensus 272 ~vEAQscYSLgNtyt---ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTYT---LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345666676655554 4567888887765433210 1222234566789999999999999999999888763
No 255
>PRK04841 transcriptional regulator MalT; Provisional
Probab=66.93 E-value=37 Score=32.41 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 50 IMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
...+|.+++ ..++..+++.+|++.+... +.+...-..+..+|.++.+.|++++|+.++.++|++-..+.=
T Consensus 694 ~~~~a~~~~---~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 694 WRNIARAQI---LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 346677777 3445678888888866531 222233457889999999999999999999999998866543
No 256
>PLN03077 Protein ECB2; Provisional
Probab=66.68 E-value=70 Score=30.78 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
.+.+++|.+++++.....+-.++ .+.+.-+.-++.|.|++++|.+.++.+ .++|+-.-..+|..
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 34566666666665522121222 245555666666777777776666665 35555443333333
No 257
>PLN03077 Protein ECB2; Provisional
Probab=65.89 E-value=82 Score=30.32 Aligned_cols=76 Identities=9% Similarity=-0.017 Sum_probs=55.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.|+.+++..+..+|. +.++.++|.+++++. .. .| + ...|--|--++..-++.+.|....+++++++|+|...
T Consensus 622 ~P~~~~y~~lv~~l~---r~G~~~eA~~~~~~m-~~--~p-d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 622 TPNLKHYACVVDLLG---RAGKLTEAYNFINKM-PI--TP-D-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred CCchHHHHHHHHHHH---hCCCHHHHHHHHHHC-CC--CC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 456677777778888 455678899998884 22 23 2 2455555557788899999999999999999998765
Q ss_pred HHHH
Q 031176 124 LGLK 127 (164)
Q Consensus 124 ~~L~ 127 (164)
--|.
T Consensus 694 y~ll 697 (857)
T PLN03077 694 YILL 697 (857)
T ss_pred HHHH
Confidence 5544
No 258
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.56 E-value=29 Score=33.61 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+.....++|-.|+||. -...|-.+|.+-+.-..+.+ =.+|-++-+|.-++|.+.|++....+|+++|+|..-++
T Consensus 641 ~~v~~v~la~~~~~~~---~~~da~~~l~q~l~~~~sep---l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 641 QDVPLVNLANLLIHYG---LHLDATKLLLQALAINSSEP---LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred hcccHHHHHHHHHHhh---hhccHHHHHHHHHhhcccCc---hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 4566789999999887 34445566666555311111 23444555566689999999999999999999998888
Q ss_pred HHHHHHhHhh
Q 031176 126 LKKTVEDRIA 135 (164)
Q Consensus 126 L~~~Ie~~~~ 135 (164)
=...|..+-.
T Consensus 715 ~l~~i~c~~~ 724 (886)
T KOG4507|consen 715 SLKLIRCMQF 724 (886)
T ss_pred HHHHHHHhhh
Confidence 7777766433
No 259
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=64.44 E-value=1.4e+02 Score=29.94 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHH----hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176 29 IIAGCEREVAEA----NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 29 ~l~~~e~~y~~~----~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~ 104 (164)
+-.+|.+.|... ...+.+.-++-.-|..|+ +.+-..++..+||.+-.. +.+...-|=.|-..|-.++.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~---r~gk~~ea~~~Le~~~~~---~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLF---RLGKGDEALKLLEALYGL---KGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH---HhcCchhHHHHHhhhccC---CCCchHHHHHHHHHHHHHhhhh
Confidence 445677777776 233335566667788888 445556677899884432 3345577888999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 031176 105 KSRQILEQCLEIAPD 119 (164)
Q Consensus 105 ~A~~~~~~lL~~eP~ 119 (164)
+|..+++++.+..|+
T Consensus 95 ~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHhhCCc
Confidence 999999999999999
No 260
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.24 E-value=12 Score=19.67 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHHhhCCCcHH
Q 031176 101 GEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 101 ~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
|++++|+..++++++..|.+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE 22 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH
Confidence 5788999999999999996653
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=62.76 E-value=1.2e+02 Score=27.31 Aligned_cols=88 Identities=19% Similarity=0.169 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHh---hcchHHHHHHHHH-HHhhCCCc
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYR---TGEYAKSRQILEQ-CLEIAPDW 120 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~k---l~~Y~~A~~~~~~-lL~~eP~n 120 (164)
++++..++-.++ ++-+|+..=|+|.+.+-.-. .+-...+..-+.+|++..| .|+.++|++.+.. +...++.+
T Consensus 140 s~div~~lllSy---RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 140 SPDIVINLLLSY---RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred ChhHHHHHHHHh---hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 455555543333 36778888888887743320 1123456677899999999 9999999999999 66777778
Q ss_pred HHHHHHHHHHHhHhhh
Q 031176 121 RQALGLKKTVEDRIAK 136 (164)
Q Consensus 121 ~Qa~~L~~~Ie~~~~~ 136 (164)
+....|.-.|-+.+-.
T Consensus 217 ~d~~gL~GRIyKD~~~ 232 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFL 232 (374)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8888887777665443
No 262
>PRK01844 hypothetical protein; Provisional
Probab=62.46 E-value=13 Score=25.84 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 031176 140 IGIGITATAVGLIA 153 (164)
Q Consensus 140 iG~~i~~~a~~~~~ 153 (164)
|+++|+++++|+++
T Consensus 7 I~l~I~~li~G~~~ 20 (72)
T PRK01844 7 ILVGVVALVAGVAL 20 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555554444433
No 263
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=62.31 E-value=87 Score=28.32 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH---HHHhhc
Q 031176 25 CDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV---GYYRTG 101 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl---g~~kl~ 101 (164)
||+..|.. .|.-...-.+|+-...|-|.++. ...--.-|..+.+.+... ....+|++|=++ -..++|
T Consensus 310 tDW~~I~a---LYdaL~~~apSPvV~LNRAVAla---~~~Gp~agLa~ve~L~~~----~~L~gy~~~h~~RadlL~rLg 379 (415)
T COG4941 310 TDWPAIDA---LYDALEQAAPSPVVTLNRAVALA---MREGPAAGLAMVEALLAR----PRLDGYHLYHAARADLLARLG 379 (415)
T ss_pred CChHHHHH---HHHHHHHhCCCCeEeehHHHHHH---HhhhHHhHHHHHHHhhcc----cccccccccHHHHHHHHHHhC
Confidence 66666665 45444334467888899999998 555667788999887764 345577666544 578999
Q ss_pred chHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 102 EYAKSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 102 ~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
.-++|+..+++++.+.++..+..-|+..+..
T Consensus 380 r~~eAr~aydrAi~La~~~aer~~l~~r~~~ 410 (415)
T COG4941 380 RVEEARAAYDRAIALARNAAERAFLRQRLDR 410 (415)
T ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999999999999999888877653
No 264
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.15 E-value=13 Score=33.22 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=55.6
Q ss_pred hcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH-------HHHHH
Q 031176 59 HSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL-------KKTVE 131 (164)
Q Consensus 59 ~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L-------~~~Ie 131 (164)
+|+..+..++|..+++-.+.- +| ...+.|--.+.-.--.++.-+|-+|+-++|.+.|.|+.|..+ -+.|+
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlal--aP-~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD 201 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALAL--AP-TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAID 201 (472)
T ss_pred HHHhccchHHHHHHHHHHHhc--CC-CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHH
Confidence 456778888999999988885 34 445777666666666678888999999999999999988754 45666
Q ss_pred hHh
Q 031176 132 DRI 134 (164)
Q Consensus 132 ~~~ 134 (164)
+++
T Consensus 202 ~r~ 204 (472)
T KOG3824|consen 202 RRM 204 (472)
T ss_pred HHH
Confidence 654
No 265
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.24 E-value=14 Score=28.07 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 031176 142 IGITATAVG 150 (164)
Q Consensus 142 ~~i~~~a~~ 150 (164)
+|+++|++|
T Consensus 71 ~gv~aGvIg 79 (122)
T PF01102_consen 71 FGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 266
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=60.73 E-value=18 Score=33.21 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 52 RLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
.-|-||+ ..++..+++..=-..++. +...-|.+|.-...+|=..+-++|....++.|+++|+++..........
T Consensus 174 lka~cl~---~~~~~~~a~~ea~~ilkl---d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 174 LKAECLA---FLGDYDEAQSEAIDILKL---DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhhhhhh---hcccchhHHHHHHHHHhc---ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 3366666 444555555555555553 3455699999999999999999999999999999999998777655543
No 267
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=59.97 E-value=22 Score=24.31 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
..+||.++.+.+..+ .... |--|+ .-|..|++++-..++-+|+...-..|++.+...+.|
T Consensus 3 l~~Ai~lv~~Av~~D--~~g~----y~eA~-----~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~R 62 (75)
T cd02684 3 LEKAIALVVQAVKKD--QRGD----AAAAL-----SLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSR 62 (75)
T ss_pred HHHHHHHHHHHHHHH--Hhcc----HHHHH-----HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 457788877766641 1111 11121 125567777888888998888888899888888776
No 268
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=59.53 E-value=14 Score=20.57 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 105 KSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 105 ~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
+.+.++..+|..+|.|.++=.=+.
T Consensus 1 ~El~~~~~~l~~~pknys~W~yR~ 24 (31)
T PF01239_consen 1 DELEFTKKALEKDPKNYSAWNYRR 24 (31)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHCcccccHHHHHH
Confidence 357899999999999987744333
No 269
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=58.56 E-value=92 Score=28.50 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=29.4
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
-+.+-..+|...+|.+=|+.+|++||++..-+.-...|
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 35667788999999999999999999987544433333
No 270
>PRK00523 hypothetical protein; Provisional
Probab=58.33 E-value=15 Score=25.48 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 031176 139 VIGIGITATAVGLIAG 154 (164)
Q Consensus 139 liG~~i~~~a~~~~~g 154 (164)
.|+++|+++++|+++|
T Consensus 7 ~I~l~i~~li~G~~~G 22 (72)
T PRK00523 7 ALGLGIPLLIVGGIIG 22 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788888866555543
No 271
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=57.73 E-value=18 Score=30.82 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=30.4
Q ss_pred hcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 100 TGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 100 l~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
+..|..=++-++.+|+-+|.|...+.|++.+.+-|.
T Consensus 5 L~sYK~QLqqVeaaL~~dP~NeEllkLe~DLkEvIs 40 (262)
T KOG3026|consen 5 LASYKLQLQQVEAALQGDPENEELLKLEKDLKEVIS 40 (262)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 456777788899999999999999999988877654
No 272
>PRK01844 hypothetical protein; Provisional
Probab=57.51 E-value=16 Score=25.37 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhc
Q 031176 140 IGIGITATAVGLIAGGIAA-ALARK 163 (164)
Q Consensus 140 iG~~i~~~a~~~~~g~~~~-a~~r~ 163 (164)
+|++|+..++++++|+++. .++|+
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777877778888887744 45553
No 273
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=57.41 E-value=37 Score=25.27 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=12.5
Q ss_pred cchHHHHHHHHHHHhhCCC
Q 031176 101 GEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 101 ~~Y~~A~~~~~~lL~~eP~ 119 (164)
.|+.+.+++.++.-..++.
T Consensus 28 ~D~~eC~~~A~~~~~~~~~ 46 (118)
T PF13436_consen 28 QDLAECRQYAQQQTNQDAQ 46 (118)
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 5667777777776655554
No 274
>PRK11901 hypothetical protein; Reviewed
Probab=56.69 E-value=10 Score=33.47 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 031176 137 DGVIGIGITATAVGLIAGGIAAAL 160 (164)
Q Consensus 137 dGliG~~i~~~a~~~~~g~~~~a~ 160 (164)
-=|||+||..+.| +|+ +|++||
T Consensus 37 h~MiGiGilVLlL-LIi-~IgSAL 58 (327)
T PRK11901 37 HMMIGIGILVLLL-LII-AIGSAL 58 (327)
T ss_pred HHHHHHHHHHHHH-HHH-HHhhhc
Confidence 5589999987554 555 468776
No 275
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=56.67 E-value=1.5e+02 Score=28.28 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-----hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH
Q 031176 20 DQIPWCDRDIIAGCEREVAEA-----NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA 94 (164)
Q Consensus 20 ~~lp~~~~~~l~~~e~~y~~~-----~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LA 94 (164)
|.+.-||+++|+..+..-..+ ...--+.+.=..||-=-. +..++++|.+++|..|.. +....-.|--.|
T Consensus 41 pk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEe---sq~e~~RARSv~ERALdv---d~r~itLWlkYa 114 (677)
T KOG1915|consen 41 PKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEE---SQKEIQRARSVFERALDV---DYRNITLWLKYA 114 (677)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhc---ccccchHHHHHH
Confidence 444448999998875444443 111113344445554444 577888888888887764 234445555556
Q ss_pred HHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 95 VGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 95 lg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
-.-.|.+.-..|++.++++..+-|.=.|
T Consensus 115 e~Emknk~vNhARNv~dRAvt~lPRVdq 142 (677)
T KOG1915|consen 115 EFEMKNKQVNHARNVWDRAVTILPRVDQ 142 (677)
T ss_pred HHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence 6666667777777777777777776444
No 276
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=53.93 E-value=2.2e+02 Score=28.18 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
...+.+++..+|...-.. .|. -..||=-+.--.-+++.++|++.++.+|+.-|+...-=-.+-.|+..+.
T Consensus 630 en~e~eraR~llakar~~--sgT--eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGT--ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCc--chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH
Confidence 345677777887775443 221 1233334444455899999999999999999999977766767766543
No 277
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=53.88 E-value=48 Score=26.06 Aligned_cols=112 Identities=15% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH----h----cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHH
Q 031176 21 QIPWCDRDIIAGCEREVAEA----N----DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYL 92 (164)
Q Consensus 21 ~lp~~~~~~l~~~e~~y~~~----~----~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~ 92 (164)
.++..+++.+..+=++.-+. . .......+..|+...+++.++......-+..++.+.....+-..+--+.||
T Consensus 94 ~~~~l~~~~~~~l~~~il~~~~~~~~~~~~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~ 173 (220)
T TIGR01716 94 TMSILNSEDLEFLGKELLERLKRYRELNRYRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFL 173 (220)
T ss_pred HHHHcCHHHHHHHHHHHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 34446666666653332221 1 111235678888888886655556666666666544310011123334467
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhC---CCcHHHHHHHHHHHh
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEIA---PDWRQALGLKKTVED 132 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~e---P~n~Qa~~L~~~Ie~ 132 (164)
-++-.|+.|+-+.+.+-++.++++- -....+..+++.+++
T Consensus 174 ~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~~~~~~~~~~~ 216 (220)
T TIGR01716 174 KGIILYKEGQKESGEEKIEQAIEIFDELGYPTLAAYYQKLLEK 216 (220)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777778888666555555544432 235556555555544
No 278
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=53.88 E-value=13 Score=34.55 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=41.2
Q ss_pred HHHHHHH---HHHhcCChhHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 49 SIMRLSW---ALVHSRQAEDVQRGIAMLEASLANSSPPL-QQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 49 ~~F~yA~---aLi~S~~~~d~~~gi~lLe~ll~~~~~~~-~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
+.+.+|. -|. +.++.+.||.+|+..+.-..++- ...-.+-.|+-+|+=++||++|++|-
T Consensus 16 SCleLalEGERLc---k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 16 SCLELALEGERLC---KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHHHHHHHHH---hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 3555543 355 66789999999999888522111 22334557888999999999999993
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=53.34 E-value=8.4 Score=34.96 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=25.9
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
-+--|+|+|.|++|..|+-+.+...|.|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~Np 131 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNP 131 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCc
Confidence 35568999999999999999999999776
No 280
>COG2023 RPR2 RNase P subunit RPR2 [Translation, ribosomal structure and biogenesis]
Probab=52.55 E-value=25 Score=26.17 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
.+-++||-||...++.+ .+.|++|++.+-.+.
T Consensus 12 eRi~~L~~lA~~~~~~~-~~laRrYv~la~~Is 43 (105)
T COG2023 12 ERIDYLYSLAEETFRTG-PDLARRYVKLARRIS 43 (105)
T ss_pred HHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH
Confidence 45699999999999999 899999999887664
No 281
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=51.98 E-value=76 Score=26.54 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh-hcchHHHHHHHHHHHhhCCCcHHH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR-TGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k-l~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
..+.++.+..+++...+. +...-+.|...|.--|+ .+|.+.|++.++..|+.-|.+...
T Consensus 13 r~~g~~~aR~vF~~a~~~---~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKD---KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHCC---CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HhCChHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 455688889999887653 33334666667777566 678888999999999999998754
No 282
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.69 E-value=1.7e+02 Score=25.83 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC---------------------------------------CchHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP---------------------------------------LQQRE 88 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~---------------------------------------~~~rd 88 (164)
-.++-|+-+|. -.+++.-.+.++.++++.+ .| ...-=
T Consensus 178 ~Vmy~~~~~ll---G~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLL---GMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHh---cchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 34555666666 5667777778888877752 11 01111
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh--hhHHHH
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK--DGVIGI 142 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~--dGliG~ 142 (164)
.+-..|..|--.+||.+|-+..+.++..+|.|.||..=|.++.-...+ |.++-|
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQL 309 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHH
Confidence 234556777778899999999999999999999999888777655443 666655
No 283
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=50.83 E-value=18 Score=29.00 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 031176 137 DGVIGIGITATAVGLIAGGIAAALA 161 (164)
Q Consensus 137 dGliG~~i~~~a~~~~~g~~~~a~~ 161 (164)
-|+| .+||++++..+||++.+.++
T Consensus 114 ~g~I-aGIvsav~valvGAvsSyia 137 (169)
T PF12301_consen 114 AGTI-AGIVSAVVVALVGAVSSYIA 137 (169)
T ss_pred cchh-hhHHHHHHHHHHHHHHHHHH
Confidence 3444 45554443445555555454
No 284
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=50.73 E-value=2.3e+02 Score=28.61 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCchHHHHHHHHHHHhc----CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 44 KQKSESIMRLSWALVHS----RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S----~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
++..+++|+...+|+-- .++.+..+|+.-++.|-.. +..+-||| -=|+.|-++++|++=.+++..+|+.-|+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 509 KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG---VGAPLEYL-GKALVYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC---CCCchHHH-hHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 55789999999998732 3446788888888774443 44455655 3489999999999999999999999999
Q ss_pred cHHHHHHHHHHHhHhh
Q 031176 120 WRQALGLKKTVEDRIA 135 (164)
Q Consensus 120 n~Qa~~L~~~Ie~~~~ 135 (164)
++.--.|++-|--++-
T Consensus 585 ~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 585 HPEISRLRDHLVYRLH 600 (932)
T ss_pred CCccHHHHHHHHHHHH
Confidence 9999999988876653
No 285
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.72 E-value=70 Score=26.10 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc----------hHHHHHHHHHHHhhCCCcHHHH
Q 031176 69 GIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE----------YAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 69 gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~----------Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
+.+.-+..... +| ...|.||+=+.+...+.+ |++|..-.+.+|+++|+...|.
T Consensus 10 ark~aea~y~~--nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 10 ARKKAEAAYAK--NP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHH---T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHh--Cc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44444453443 24 446888777766666644 4667777899999999987654
No 286
>PF13041 PPR_2: PPR repeat family
Probab=50.53 E-value=47 Score=19.93 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=20.5
Q ss_pred HHHHhhcchHHHHHHHHHHHh--hCCCcHHHHHH
Q 031176 95 VGYYRTGEYAKSRQILEQCLE--IAPDWRQALGL 126 (164)
Q Consensus 95 lg~~kl~~Y~~A~~~~~~lL~--~eP~n~Qa~~L 126 (164)
-+|.+.|++++|.+.++.+.+ +.|+...+..|
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 466777777777777777765 34555444443
No 287
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.39 E-value=54 Score=28.90 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=31.1
Q ss_pred HHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 75 ASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 75 ~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
.++.. .|.+. |.|..+|..+...||++.|-..++++|
T Consensus 31 ~ll~~--~PyHi-dtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQK--NPYHI-DTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHH--CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44543 46555 999999999999999999999999986
No 288
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.49 E-value=30 Score=30.50 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHhcCChh----HHHHHHHHHHHHhhCCC-----CC-----------CchHH---HHHHHHHHHHhhcc
Q 031176 46 KSESIMRLSWALVHSRQAE----DVQRGIAMLEASLANSS-----PP-----------LQQRE---KLYLLAVGYYRTGE 102 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~----d~~~gi~lLe~ll~~~~-----~~-----------~~~rd---~lY~LAlg~~kl~~ 102 (164)
..++..+.|....+..+.+ -+++|+-.++..+...= +. ...|. ++|-.-...-+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 5677888888777554332 34455555543222110 00 11122 23444456668899
Q ss_pred hHHHHHHHHHHHhhCCC-cH---------------HHHHHHHHHHhHh
Q 031176 103 YAKSRQILEQCLEIAPD-WR---------------QALGLKKTVEDRI 134 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~-n~---------------Qa~~L~~~Ie~~~ 134 (164)
|..|+++|+.+|.++|+ |+ |+.-|.+.++.-.
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 99999999999999999 54 6666666666543
No 289
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=49.38 E-value=67 Score=30.67 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=68.1
Q ss_pred hhhhhhhhhcccccCCCCCCCCCHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC
Q 031176 4 KISKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEA--NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS 81 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~lp~~~~~~l~~~e~~y~~~--~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~ 81 (164)
.|.++++.|..|=..+-..+..+++.+.. ++-+. ..+ .|.+|-.+....... .-.-+..++++-+
T Consensus 408 ~W~~l~~~ll~l~~~~~~f~~l~~~~~~~---~~l~~LL~~~------~f~la~~~~~~~~~~--~l~~~~~~~lvl~-- 474 (715)
T PF08314_consen 408 DWKQLLNDLLWLQDWGGVFGCLSKDEIEE---IFLEALLSSG------RFSLAKSLYEESSSS--PLSSEKVEDLVLK-- 474 (715)
T ss_dssp HHHHHHTTT-TTS--S-SSTTS-HHHHHH---HHHHHHHHTT-------HHHHHHHHHHTT-----TT-HHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCHHHHHH---HHHHHHHHCC------CHHHHHHHHhcCCcC--CCCHHHHHHHHHH--
Confidence 36666666666544443445555554433 44444 333 566777777554332 1223344454542
Q ss_pred CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 82 PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 82 ~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
..++++..-+-++.+.|+..+|.++++.+-...|+..+.+.++.+|+.
T Consensus 475 ---~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~~~~~~~~~~Li~a 522 (715)
T PF08314_consen 475 ---AAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPNSPRIQREKDLIKA 522 (715)
T ss_dssp ---HHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ---HHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCccHHHHHHHHHHHH
Confidence 457899999999999999999999999999998888888888888865
No 290
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=49.24 E-value=93 Score=22.07 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHHHHHhhcc---hHHHHHHHHHHHhhCCC
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSP-PLQQREKLYLLAVGYYRTGE---YAKSRQILEQCLEIAPD 119 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~-~~~~rd~lY~LAlg~~kl~~---Y~~A~~~~~~lL~~eP~ 119 (164)
+..|+-|+..+++..+----.|+.+|..++++ .+ +....+.+.-+-+.+-+..| |-.|.+....+-...|+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~-~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIES-KSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHc-CCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34577777777777777666777777777776 33 33333444444444444333 66777777777777776
No 291
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=49.06 E-value=38 Score=24.98 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=17.6
Q ss_pred HHHHHHHhHhhhhhHHHHHHHHHHH
Q 031176 125 GLKKTVEDRIAKDGVIGIGITATAV 149 (164)
Q Consensus 125 ~L~~~Ie~~~~~dGliG~~i~~~a~ 149 (164)
.|++.....-.+..+.|+|++++++
T Consensus 39 ~~kr~~~~~R~rN~~Tgl~L~~~v~ 63 (100)
T PF09813_consen 39 QLKRKLQRRRRRNLLTGLALGAFVV 63 (100)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455566666779999999887544
No 292
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.00 E-value=1.1e+02 Score=31.02 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 95 VGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 95 lg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
..++|+++|..|-.++.++|++-|..++|..-++.+.
T Consensus 1092 n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~ 1128 (1202)
T KOG0292|consen 1092 NVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQ 1128 (1202)
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 3689999999999999999999999988877666553
No 293
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=48.79 E-value=20 Score=18.82 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=19.8
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 92 LLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 92 ~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.+=-+|.+.|++++|.+.++++.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHhHC
Confidence 3445788999999999999887653
No 294
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=46.75 E-value=1.3e+02 Score=30.29 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+-+.+=-|.++ +.+..++|...++.++++ .| +.-=+.-+=|+.+.|+|.+++|..+.+.+=..-|++.
T Consensus 10 err~rpi~d~l---d~~qfkkal~~~~kllkk--~P-n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~ 77 (932)
T KOG2053|consen 10 ERRLRPIYDLL---DSSQFKKALAKLGKLLKK--HP-NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD 77 (932)
T ss_pred HHHHhHHHHHh---hhHHHHHHHHHHHHHHHH--CC-CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch
Confidence 44455568888 777889999999999997 34 3445566778999999999999977777666666644
No 295
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=45.54 E-value=46 Score=17.46 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.2
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 92 LLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 92 ~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.+=-+|.+.|++++|.+.++.+.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4455789999999999999988653
No 296
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.32 E-value=43 Score=23.24 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 65 DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 65 d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
+..+||.++.+.+.. =+.|+|++|++++..+|+
T Consensus 2 ~l~kai~Lv~~A~~e------------------D~~gny~eA~~lY~~ale 34 (75)
T cd02680 2 DLERAHFLVTQAFDE------------------DEKGNAEEAIELYTEAVE 34 (75)
T ss_pred CHHHHHHHHHHHHHh------------------hHhhhHHHHHHHHHHHHH
Confidence 456788888776664 134667777666544443
No 297
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.20 E-value=48 Score=32.73 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH---HhhCCCcHHHH
Q 031176 65 DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC---LEIAPDWRQAL 124 (164)
Q Consensus 65 d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l---L~~eP~n~Qa~ 124 (164)
+|...+...|.+.+. .+++++.=+--..+-.||-+|+|++|+.|.=++ +.++|+++-+.
T Consensus 38 EIsd~l~~IE~lyed-~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~e 99 (929)
T KOG2062|consen 38 EISDSLPKIESLYED-ETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVE 99 (929)
T ss_pred HhhhhHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhh
Confidence 445556666665554 444444334367788999999999999995543 55555554333
No 298
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=45.17 E-value=51 Score=29.61 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=39.4
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
......+|=.+.++.++.+|++|++-.+...+..|++.+-..-...+
T Consensus 306 ~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 306 RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34457899999999999999999999999999999998765544443
No 299
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.10 E-value=16 Score=36.25 Aligned_cols=83 Identities=11% Similarity=0.216 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHH---------HHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKL---------YLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~l---------Y~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
++..+|.||++|=|-+.++|-.+|.+.+-.++.+. ++.. .|-+ .+++-.|.--+..+.|.+.+.+++++
T Consensus 239 ~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e-g~va-pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 239 THNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE-GPVA-PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred cCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc-CCCC-CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999873 3322 2322 36666777777788899999999999
Q ss_pred CCCcHHHHHHHHHH
Q 031176 117 APDWRQALGLKKTV 130 (164)
Q Consensus 117 eP~n~Qa~~L~~~I 130 (164)
+|.-.-.+.|-.++
T Consensus 317 eP~~~sGIN~atLL 330 (1226)
T KOG4279|consen 317 EPLEYSGINLATLL 330 (1226)
T ss_pred CchhhccccHHHHH
Confidence 99988777666555
No 300
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.83 E-value=1.6e+02 Score=24.25 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhCCCCCC-ch----HHHHH-HHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH-HHHHHHhH
Q 031176 66 VQRGIAMLEASLANSSPPL-QQ----REKLY-LLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG-LKKTVEDR 133 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~~~~~-~~----rd~lY-~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~-L~~~Ie~~ 133 (164)
.+-|+.+|+.+-+. .+.+ .. +-++- ..-+.+.+.|+|++|.+..+++.. +|+++.-+. |...|.++
T Consensus 85 LESAl~v~~~I~~E-~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKE-FSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 56677787765443 2221 12 22332 334578999999999999999999 999876544 44445444
No 301
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.12 E-value=38 Score=23.48 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=3.1
Q ss_pred HHHhhc
Q 031176 158 AALARK 163 (164)
Q Consensus 158 ~a~~r~ 163 (164)
+.++||
T Consensus 22 ~fiark 27 (71)
T COG3763 22 FFIARK 27 (71)
T ss_pred HHHHHH
Confidence 455554
No 302
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.59 E-value=35 Score=30.93 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 63 AEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
-+|+..|+..|+.+=-.. ..|.-.--.+||++.+|.=+++|..|.+....+|-
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999998732110 12333345679999999999999999999877763
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=42.65 E-value=1.2e+02 Score=21.55 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 18 GGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 18 ~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
|.+.++.+++..+..+=+.-++ ...........-|.-+.++++..+-+++.+|+.++++
T Consensus 9 T~~~~~~p~~~~i~~i~d~~~~---~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN 67 (115)
T cd00197 9 TSNENMGPDWPLIMEICDLINE---TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKN 67 (115)
T ss_pred cCCCCCCCCHHHHHHHHHHHHC---CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 3466777887776654333322 2344566777777778888999999999999999997
No 304
>PF12854 PPR_1: PPR repeat
Probab=42.58 E-value=23 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcchHHHHHHHHHH
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
--|=-+|.|.|+.++|++..+.+
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC
Confidence 34556889999999999887753
No 305
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.51 E-value=3.2e+02 Score=25.96 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCchHH--HHHHHHHHHhcCChhHHHHHHHH-HHHHhhCCCCCCchHHHHHHHHHHHH
Q 031176 22 IPWCDRDIIAGCEREVAEANDDKQKSES--IMRLSWALVHSRQAEDVQRGIAM-LEASLANSSPPLQQREKLYLLAVGYY 98 (164)
Q Consensus 22 lp~~~~~~l~~~e~~y~~~~~~~~s~~~--~F~yA~aLi~S~~~~d~~~gi~l-Le~ll~~~~~~~~~rd~lY~LAlg~~ 98 (164)
+|.++..++++++.+|++...++++.+. .|..+.+|=|=.++.....=-.+ +++....+.++--..-++|-||+.++
T Consensus 422 f~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~ 501 (546)
T KOG3783|consen 422 FSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYW 501 (546)
T ss_pred cccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 5668889999999999998333333333 34446665544433333222111 12223333566666789999999999
Q ss_pred hhcc-hHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 99 RTGE-YAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 99 kl~~-Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
.++. ..+|+.+..++=.-.-++.=--.|+=.|.
T Consensus 502 ~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rIq 535 (546)
T KOG3783|consen 502 DLGGGLKEARALLLKAREYASDYELENRLHMRIQ 535 (546)
T ss_pred hcccChHHHHHHHHHHHhhccccchhhHHHHHHH
Confidence 9999 88888888887766655544344444343
No 306
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.45 E-value=37 Score=30.48 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=34.8
Q ss_pred CCCchHHHHH--HHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 82 PPLQQREKLY--LLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 82 ~~~~~rd~lY--~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+|....|++- ..|.-.++.|+-++|.+..+-+|.+.|.|.|+..
T Consensus 109 ~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~ 154 (472)
T KOG3824|consen 109 DPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILI 154 (472)
T ss_pred CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHH
Confidence 4555555552 3455678999999999999999999999999864
No 307
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=41.37 E-value=42 Score=24.34 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
-..+|+=|+-.+|.|||++|.+.++.+=+
T Consensus 17 Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 17 ARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678889999999999999999776533
No 308
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.28 E-value=1.1e+02 Score=21.04 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHHHhhcchHHHHHH-------HHHHHhhC-CCcHHHHHHHHHHHhHhhh
Q 031176 95 VGYYRTGEYAKSRQI-------LEQCLEIA-PDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 95 lg~~kl~~Y~~A~~~-------~~~lL~~e-P~n~Qa~~L~~~Ie~~~~~ 136 (164)
+-.=+.|+|++|+.+ +-..+..+ +++..-...+..|.+-+.|
T Consensus 14 ve~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~R 63 (76)
T cd02681 14 VQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDR 63 (76)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 333344555555554 44443444 6666666667777766655
No 309
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=41.26 E-value=84 Score=32.13 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=58.3
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
++++-..+|.-++..++. +| ..-+||--|.-+|-+-|.|+.|++..+++-.+.|+.-=++--...++..+
T Consensus 574 ea~n~h~aV~~fQsALR~--dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRT--DP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred CccchhhHHHHHHHHhcC--Cc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 566778899999998885 45 55699999999999999999999999999999999887666666555543
No 310
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.18 E-value=61 Score=22.20 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
+.+|++++...+..+ . ..=|-=|+ .-|..|+.++-..++-+|+...-..++..|.+.+.|
T Consensus 3 l~~A~~l~~~Ave~d--~----~~~y~eA~-----~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~R 62 (75)
T cd02677 3 LEQAAELIRLALEKE--E----EGDYEAAF-----EFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKR 62 (75)
T ss_pred HHHHHHHHHHHHHHH--H----HhhHHHHH-----HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 456777777766641 1 11111111 123344555666677888888888888888777765
No 311
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=40.88 E-value=44 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
..+|+=|+-.+|.|||++|.+.++.+=
T Consensus 16 rs~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 16 RSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567888999999999999999977653
No 312
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=40.83 E-value=61 Score=17.54 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhh
Q 031176 48 ESIMRLSWALVHSR-QAEDVQRGIAMLEASLA 78 (164)
Q Consensus 48 ~~~F~yA~aLi~S~-~~~d~~~gi~lLe~ll~ 78 (164)
+++|++|..+.... .+.|..+|+..++....
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 46677777766432 34566667666665443
No 313
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=40.42 E-value=1e+02 Score=20.06 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=41.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
++++..+..-+++|-+.. -.+++..|.+++.. .++.-++.+...| + ++|+ .++...+..+|+-++++
T Consensus 11 ~~~~~vr~~a~~~L~~~~----~~~~~~~L~~~l~d-~~~~vr~~a~~aL--~--~i~~-~~~~~~L~~~l~~~~~~ 77 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG----DPEAIPALIELLKD-EDPMVRRAAARAL--G--RIGD-PEAIPALIKLLQDDDDE 77 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT----HHHHHHHHHHHHTS-SSHHHHHHHHHHH--H--CCHH-HHTHHHHHHHHTC-SSH
T ss_pred CCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHcC-CCHHHHHHHHHHH--H--HhCC-HHHHHHHHHHHcCCCcH
Confidence 457888888888888443 23688888888864 4444444443333 3 3444 55777777777776543
No 314
>PF03186 CobD_Cbib: CobD/Cbib protein; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon [].; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=39.96 E-value=1.3e+02 Score=25.60 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=39.7
Q ss_pred HHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH-HHhHhh--hhhHHHHHHHHHHHHHHHHH
Q 031176 97 YYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT-VEDRIA--KDGVIGIGITATAVGLIAGG 155 (164)
Q Consensus 97 ~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~-Ie~~~~--~dGliG~~i~~~a~~~~~g~ 155 (164)
..+.||.+.||+++..+...|.++-....+-+. ||.-.. .||+++.-.=. +++|+.|+
T Consensus 105 aL~~gdl~~AR~~l~~lv~Rdt~~L~~~~i~ra~iEs~aen~~d~v~apLf~~-~l~G~~gA 165 (295)
T PF03186_consen 105 ALEAGDLEAARQALSPLVGRDTDQLSEEGIARAAIESLAENLSDGVFAPLFWF-ALGGPPGA 165 (295)
T ss_pred HHhcCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHhHHHH
Confidence 347789999999999999999887766666554 444333 39998865543 23444443
No 315
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.48 E-value=3.9e+02 Score=26.41 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred hhhhhhhhcccccCCCC---CCCCCHHHHHHHHHHHHHHhcCCC----chH---HHHHHHHHHHh-cCChhHHHHHHHHH
Q 031176 5 ISKFFDSIGSFFTGGDQ---IPWCDRDIIAGCEREVAEANDDKQ----KSE---SIMRLSWALVH-SRQAEDVQRGIAML 73 (164)
Q Consensus 5 ~~~~~~~~~~~~~~~~~---lp~~~~~~l~~~e~~y~~~~~~~~----s~~---~~F~yA~aLi~-S~~~~d~~~gi~lL 73 (164)
+.+++....+-|++++. +.-+..++|..=|+.-+-..+... +.+ ..-+.-|.-.. |...+++..++++.
T Consensus 298 i~~~~~~~~~~~~g~~~~sr~l~~~~~~L~~dE~I~e~F~~~~t~~~lTkE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y 377 (872)
T KOG4814|consen 298 INKLNSKNDSKFLGKAICSRFLITTQSKLMNDEEIAESFENFSTQMELTKEAISCIHTLLWNTAKKLFKMEKYVVSIRFY 377 (872)
T ss_pred HHHHhhhcccchhhhhhhhHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45666666666666532 222334444433332222211111 222 22333443332 24778999999999
Q ss_pred HHHhhCCCCCC---chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 74 EASLANSSPPL---QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 74 e~ll~~~~~~~---~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+-.++.-..+. ++---.=.|++.|.++...++|+++++.+=+.+|.|.
T Consensus 378 ~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 378 KLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 88766311111 1122335799999999999999999999999999987
No 316
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=39.41 E-value=50 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
-..+|+-|+-..|.|||++|.+.++.+=+
T Consensus 14 Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 14 ARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678899999999999999999876644
No 317
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.25 E-value=2.6e+02 Score=24.41 Aligned_cols=81 Identities=16% Similarity=0.090 Sum_probs=64.2
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch-HHHHHHHHHHHhhCCCcH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY-AKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y-~~A~~~~~~lL~~eP~n~ 121 (164)
=.+++.+....|.|-+ ..+++.+|-.+|++.+.+ ++ ..-|.|-++-+..--+|.= +---+++.++-...|+..
T Consensus 203 ~~~T~~llnG~Av~~l---~~~~~eeAe~lL~eaL~k--d~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 203 TPPTPLLLNGQAVCHL---QLGRYEEAESLLEEALDK--DA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred cCCChHHHccHHHHHH---HhcCHHHHHHHHHHHHhc--cC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 3567888888999999 788899999999999986 33 3358898888777777665 445688999999999998
Q ss_pred HHHHHHHH
Q 031176 122 QALGLKKT 129 (164)
Q Consensus 122 Qa~~L~~~ 129 (164)
=.+.+.+.
T Consensus 277 ~vk~~~ek 284 (299)
T KOG3081|consen 277 FVKHLNEK 284 (299)
T ss_pred HHHHHHHH
Confidence 87776553
No 318
>PRK01209 cobD cobalamin biosynthesis protein; Provisional
Probab=38.90 E-value=1.5e+02 Score=25.48 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=33.5
Q ss_pred HhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH-HhHhhh--hhHHHHHH
Q 031176 98 YRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV-EDRIAK--DGVIGIGI 144 (164)
Q Consensus 98 ~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I-e~~~~~--dGliG~~i 144 (164)
.+.||-+.||+.+..+...++++-....+.+.. |.-... ||+++.-.
T Consensus 109 l~~gd~~~AR~~l~~~v~Rdt~~Ls~~~i~~a~iEs~~en~~d~~~aplF 158 (312)
T PRK01209 109 LRAGDLEEARRAVSMIVGRDTSQLDEEGIARAAIESVAENTSDGVIAPLF 158 (312)
T ss_pred HHcCCHHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHhcccchHHHHH
Confidence 346899999999999999988876555555544 443333 88887654
No 319
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=38.66 E-value=1.6e+02 Score=21.88 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 18 GGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 18 ~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
|++.+|.+|++-+..+=+..+. +...+.-..+.---=++++++..+..++.+|+.++++
T Consensus 9 Ts~~l~~~dw~~~l~icD~i~~---~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkN 67 (133)
T smart00288 9 TSPSLLEEDWELILEICDLINS---TPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKN 67 (133)
T ss_pred cCcCCCCcCHHHHHHHHHHHhC---CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5678888999988776444433 2344555555555556689999999999999999986
No 320
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=38.38 E-value=57 Score=23.02 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhc
Q 031176 151 LIAGGIAAALARK 163 (164)
Q Consensus 151 ~~~g~~~~a~~r~ 163 (164)
+.+.|++.+|.||
T Consensus 70 laVaGlI~~l~RK 82 (83)
T PF05356_consen 70 LAVAGLIYSLLRK 82 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3344567888876
No 321
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=38.35 E-value=69 Score=26.97 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 031176 145 TATAVGLIAGGIAAAL 160 (164)
Q Consensus 145 ~~~a~~~~~g~~~~a~ 160 (164)
-|++||+++|++...+
T Consensus 348 nGallG~liG~~~~~i 363 (367)
T PF04286_consen 348 NGALLGGLIGLLQYLI 363 (367)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3666777777654443
No 322
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=38.32 E-value=50 Score=24.20 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
-...|+=|+-.+|.|||++|.+.++.+=+
T Consensus 20 Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 20 ARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678899999999999999999876544
No 323
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=38.24 E-value=29 Score=23.12 Aligned_cols=12 Identities=50% Similarity=0.443 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 031176 148 AVGLIAGGIAAA 159 (164)
Q Consensus 148 a~~~~~g~~~~a 159 (164)
++|+.||++++|
T Consensus 10 ~~ggfVg~iG~a 21 (58)
T PF15061_consen 10 FVGGFVGLIGAA 21 (58)
T ss_pred hHHHHHHHHHHH
Confidence 345555555554
No 324
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=37.92 E-value=64 Score=21.92 Aligned_cols=9 Identities=0% Similarity=0.464 Sum_probs=5.0
Q ss_pred hHHHHHHHH
Q 031176 138 GVIGIGITA 146 (164)
Q Consensus 138 GliG~~i~~ 146 (164)
+++|+|+++
T Consensus 4 ~~i~~Glaa 12 (66)
T PRK13467 4 TILALALAC 12 (66)
T ss_pred HHHHHHHHH
Confidence 456666543
No 325
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.34 E-value=81 Score=18.88 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
||+--|+=......+|++|..=.+.+|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56777888888888999998887777765
No 326
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=37.15 E-value=29 Score=29.14 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=6.6
Q ss_pred hHhhhhhHHHHHH
Q 031176 132 DRIAKDGVIGIGI 144 (164)
Q Consensus 132 ~~~~~dGliG~~i 144 (164)
+.-..+..+|.+.
T Consensus 37 ~~~~~~~~~g~~~ 49 (239)
T TIGR03789 37 QEADQEALIGLGS 49 (239)
T ss_pred cccccchhhhHHH
Confidence 3334455666544
No 327
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=37.14 E-value=20 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
..||.|+. |+++|+|++|+++|+.
T Consensus 105 E~r~vWk~----yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 105 EDRDVWKI----YLDKGDFDEALQYCKT 128 (147)
T ss_pred chHHHHHH----HHhcCcHHHHHHHccC
Confidence 45788874 6899999999999976
No 328
>COG2826 Tra8 Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
Probab=36.90 E-value=40 Score=29.65 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=32.3
Q ss_pred hhcccccCCCCCCCCCHHHHHHHHHHHHHH---hcCCCchHHHH
Q 031176 11 SIGSFFTGGDQIPWCDRDIIAGCEREVAEA---NDDKQKSESIM 51 (164)
Q Consensus 11 ~~~~~~~~~~~lp~~~~~~l~~~e~~y~~~---~~~~~s~~~~F 51 (164)
.|.+||+++.|+-..++++|...+...+.- .-|..++.-.|
T Consensus 267 liRrf~PKgTdla~vt~~el~~i~~~lN~rPRK~Lg~ktp~E~f 310 (318)
T COG2826 267 LIRRFLPKGTDLAAVTQEELAAIADLLNHRPRKCLGYKTPYEVF 310 (318)
T ss_pred HHHHhCCCCCchhhCCHHHHHHHHHHHhcCchhhhCCCCHHHHH
Confidence 577899999999999999999999998876 33444544443
No 329
>PF09686 Plasmid_RAQPRD: Plasmid protein of unknown function (Plasmid_RAQPRD); InterPro: IPR019110 This entry identifies a family of proteins, around 100 amino acids in length, that include a predicted signal sequence and a perfectly conserved motif, RAQPRD, towards the C terminus. They are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae pv. tomato str. DC3000. The function of these proteins is unknown.
Probab=36.78 E-value=46 Score=23.50 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH---hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 031176 30 IAGCEREVAEA---NDDKQKSESIMRLSWALVHSRQAEDVQRGIAML 73 (164)
Q Consensus 30 l~~~e~~y~~~---~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lL 73 (164)
|...|....+. .+..++....|+|.|..- +-.-++.||.--
T Consensus 20 Ld~l~~~~~rA~~~a~~~~~~R~~FdY~rl~~---Dl~~ir~GI~~Y 63 (81)
T PF09686_consen 20 LDQLEALLERAEAQANQSPSSRYYFDYPRLRA---DLERIRAGIQDY 63 (81)
T ss_pred HHHHHHHHHHHHHhccCCCCCceeecHHHHHH---HHHHHHHHHHHH
Confidence 44445555555 222345589999999988 888888888753
No 330
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=36.78 E-value=37 Score=22.82 Aligned_cols=7 Identities=43% Similarity=0.444 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 031176 149 VGLIAGG 155 (164)
Q Consensus 149 ~~~~~g~ 155 (164)
+|+++|.
T Consensus 11 ~Ga~~gl 17 (74)
T PF12732_consen 11 AGAAAGL 17 (74)
T ss_pred HHHHHHH
Confidence 4555543
No 331
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=36.70 E-value=90 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=13.1
Q ss_pred CCcHHHHHHHHHHHhHhhhhhHH
Q 031176 118 PDWRQALGLKKTVEDRIAKDGVI 140 (164)
Q Consensus 118 P~n~Qa~~L~~~Ie~~~~~dGli 140 (164)
|+++|....+..+|+--.|.++|
T Consensus 14 snkpn~~~id~yVediryr~qli 36 (73)
T COG4218 14 SNKPNTDRIDTYVEDIRYRSQLI 36 (73)
T ss_pred cCCCChhHHHHHHHHHHHHHHhh
Confidence 56666666666666654443333
No 332
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.64 E-value=3.9e+02 Score=25.57 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176 25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY 103 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y 103 (164)
.+.-+++++++-+++. ..+..+...=..||-+-++ ...+..|..+....+.. -++-.-.||=...---.+|+-
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk---nk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK---NKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh---hhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhccc
Confidence 5667888899999998 6677788888899999994 44555566666555553 234445666666666678888
Q ss_pred HHHHHHHHHHHhhCCCcH
Q 031176 104 AKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~n~ 121 (164)
.-|++..++=+..+|+.+
T Consensus 158 ~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 158 AGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHHHHHHHcCCCcHH
Confidence 888888888888888754
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.60 E-value=2.2e+02 Score=22.61 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
..+...+.=++..+..|.+ .+|.. ++- - .++..+.-.+-++.|.+.|++.+|++..+.+-.-.|.++=++.|..
T Consensus 12 gLie~~~~al~~~~~~D~e---~lL~A-Lrv-L-RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAE---ALLDA-LRV-L-RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHccCChHHHH---HHHHH-HHH-h-CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3444445445444444444 34433 221 1 2456699999999999999999999999999999999999999998
Q ss_pred HHHhHhhhhhHHHHHH
Q 031176 129 TVEDRIAKDGVIGIGI 144 (164)
Q Consensus 129 ~Ie~~~~~dGliG~~i 144 (164)
..=......++-+.+-
T Consensus 86 ~CL~~~~D~~Wr~~A~ 101 (160)
T PF09613_consen 86 LCLYALGDPSWRRYAD 101 (160)
T ss_pred HHHHHcCChHHHHHHH
Confidence 8877666666665544
No 334
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=35.63 E-value=58 Score=24.17 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
...+|-|+-++|.|+|++|...++.+
T Consensus 20 rS~~~eAl~~Ak~g~f~~A~~~i~eA 45 (105)
T COG1447 20 RSKAYEALKAAKEGDFEEAEELIQEA 45 (105)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678899999999999999887654
No 335
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.53 E-value=81 Score=21.83 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
|..-+-+.+.+||..|++.+.+.+...+.+.+
T Consensus 2 ~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~ 33 (94)
T PF12862_consen 2 YLRYLNALRSGDYSEALDALHRYFDYAKQSNN 33 (94)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc
Confidence 44456678999999999998888887766554
No 336
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.52 E-value=85 Score=22.87 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=37.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 54 A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
.-.|++..|.=+++...+.|++ +..+.-|..-|+..|.+++|++.+..+-.
T Consensus 17 l~~llr~~N~C~~~~~e~~L~~-----------~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 17 LGPLLRLPNYCDLEEVEEVLKE-----------HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHccCCcCCHHHHHHHHHH-----------cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3445666666666666555533 45667788999999999999999998877
No 337
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=35.26 E-value=1.3e+02 Score=22.52 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 031176 146 ATAVGLIAGGIAAALARKK 164 (164)
Q Consensus 146 ~~a~~~~~g~~~~a~~r~~ 164 (164)
....|.+++.+++++.|||
T Consensus 145 ~l~~G~i~sli~a~i~kkk 163 (163)
T PF13858_consen 145 NLIFGFIISLIIALILKKK 163 (163)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 4446778888888888876
No 338
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=35.24 E-value=51 Score=30.96 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031176 136 KDGVIGIGITATAVGLIAGGIAAALARKK 164 (164)
Q Consensus 136 ~dGliG~~i~~~a~~~~~g~~~~a~~r~~ 164 (164)
+..+||+-+.|.++|.|+ .|..+|.|+|
T Consensus 547 ~~av~gllv~~~~i~tvi-visl~mlrkr 574 (615)
T KOG3540|consen 547 ASAVIGLLVSAVFIATVI-VISLVMLRKR 574 (615)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHccc
Confidence 355555544443333333 3445555543
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=35.20 E-value=3.8e+02 Score=25.02 Aligned_cols=111 Identities=10% Similarity=0.016 Sum_probs=62.5
Q ss_pred hhhhhhhcccccCCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCC---
Q 031176 6 SKFFDSIGSFFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSP--- 82 (164)
Q Consensus 6 ~~~~~~~~~~~~~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~--- 82 (164)
.+++..+++...+.+.-|..+...+..--.-|.. -.-...|...|+-.--.+.......++.+.+......+
T Consensus 325 ~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~-----l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 399 (608)
T PF10345_consen 325 EKALKQIEKLKIKSPSAPSESLSEASERIQWLRY-----LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLY 399 (608)
T ss_pred HHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchh
Confidence 4445555554423333344444444332222222 12356677788877555566666666666665553111
Q ss_pred CCchHHHHHHHHHHHHhhcchHHHHHHHH--------HHHhhCCCcH
Q 031176 83 PLQQREKLYLLAVGYYRTGEYAKSRQILE--------QCLEIAPDWR 121 (164)
Q Consensus 83 ~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~--------~lL~~eP~n~ 121 (164)
+....-.+|..|+-+--.|+.+.|+.++. .+.+..|.++
T Consensus 400 ~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 400 ESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 01123346888888889999999999997 5555555444
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=35.18 E-value=2.3e+02 Score=22.45 Aligned_cols=78 Identities=17% Similarity=0.122 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
.++..+--+|-.| ..++..+|+.+|+++... +....=|--.+|++.+-+||-+ =+.+.+.+|+-. +|.++..
T Consensus 43 ~~e~d~~dg~l~i---~rg~w~eA~rvlr~l~~~---~~~~p~~kAL~A~CL~al~Dp~-Wr~~A~~~le~~-~~~~a~~ 114 (153)
T TIGR02561 43 LKELDMFDGWLLI---ARGNYDEAARILRELLSS---AGAPPYGKALLALCLNAKGDAE-WHVHADEVLARD-ADADAVA 114 (153)
T ss_pred ccccchhHHHHHH---HcCCHHHHHHHHHhhhcc---CCCchHHHHHHHHHHHhcCChH-HHHHHHHHHHhC-CCHhHHH
Confidence 3344444455555 444555555555554432 1122233334444444444432 234444444433 3444444
Q ss_pred HHHHHH
Q 031176 126 LKKTVE 131 (164)
Q Consensus 126 L~~~Ie 131 (164)
|-+.++
T Consensus 115 Lv~al~ 120 (153)
T TIGR02561 115 LVRALL 120 (153)
T ss_pred HHHHHh
Confidence 444444
No 341
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=35.06 E-value=29 Score=32.07 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.|.-+-||=++|||.|++.+|.++....|.-.|++.-.+
T Consensus 132 ~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik 170 (471)
T KOG4459|consen 132 PRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIK 170 (471)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHH
Confidence 456778999999999999999999999999999987554
No 342
>PRK07630 CobD/CbiB family protein; Provisional
Probab=35.02 E-value=1.8e+02 Score=25.10 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=33.3
Q ss_pred hhcchHHHHHHHHHHHhhCCCcHHHHHHHH-HHHhHhhh--hhHHHHHH
Q 031176 99 RTGEYAKSRQILEQCLEIAPDWRQALGLKK-TVEDRIAK--DGVIGIGI 144 (164)
Q Consensus 99 kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~-~Ie~~~~~--dGliG~~i 144 (164)
+.||.+.||++...+...|+++-...++.+ .||.-... ||+++...
T Consensus 106 ~~~dl~~AR~~l~~~v~rdt~~l~~~~i~~a~iEs~~en~~d~~~aplF 154 (312)
T PRK07630 106 RNDDLPRARELLGEWTGLDTVDMPVSEIVRHTIEHALVASHRHVFGVFF 154 (312)
T ss_pred HcCCHHHHHHHHHHHhCCCcccCChhHHHHHHHHHHHHHhcccchHHHH
Confidence 568999999999999988888655444444 46665444 88887643
No 343
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=34.99 E-value=60 Score=24.31 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
-..+|+=|+-..|.|||++|.+.++.+=+
T Consensus 31 ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 31 ARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678899999999999999999877644
No 344
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=34.65 E-value=1.4e+02 Score=23.72 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=46.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 54 A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
+.+|. ...+...+++++.+.+.- -+.+--.+.+-|.++--.|+-++|+.=.+++|++.-+
T Consensus 50 ~vala---E~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 50 AIALA---EAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHH---hccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 45555 677888899999887774 2345577888899999999999999999999988643
No 345
>PF01669 Myelin_MBP: Myelin basic protein; InterPro: IPR000548 The myelin sheath is a multi-layered membrane, unique to the nervous system, that functions as an insulator to greatly increase the velocity of axonal impulse conduction []. Myelin basic protein (MBP) [, ] is a hydrophilic protein that may function to maintain the correct structure of myelin, interacting with the lipids in the myelin membrane by electrostatic and hydrophobic interactions. In mammals various forms of MBP exist which are produced by the alternative splicing of a single gene; these forms differ by the presence or the absence of short (10 to 20 residues) peptides in various internal locations in the sequence. The major form of MBP is generally a protein of about 18.5 Kd (170 residues). MBP is the target of many post-translational modifications: it is N-terminally acetylated, methylated on an arginine residue, phosphorylated by various serine/threonine protein-kinases, and deamidated on some glutamine residues.; GO: 0019911 structural constituent of myelin sheath; PDB: 1HQR_C 1BX2_F 1ZGL_L 1FV1_F 1YMM_C.
Probab=34.42 E-value=13 Score=28.28 Aligned_cols=18 Identities=39% Similarity=0.885 Sum_probs=0.0
Q ss_pred hhhhhcccccCCCCCCCC
Q 031176 8 FFDSIGSFFTGGDQIPWC 25 (164)
Q Consensus 8 ~~~~~~~~~~~~~~lp~~ 25 (164)
++|+|++||.++-.+|.-
T Consensus 23 ~lDslgrfFGGdr~vp~r 40 (123)
T PF01669_consen 23 LLDSLGRFFGGDRKVPRR 40 (123)
T ss_dssp ------------------
T ss_pred HHHHHHhhhcCccCCccc
Confidence 689999999999999983
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.15 E-value=3.1e+02 Score=23.73 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHH----hcCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC----CchHHHHHHHHH
Q 031176 25 CDRDIIAGCEREVAEA----NDDKQ-KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP----LQQREKLYLLAV 95 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~----~~~~~-s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~----~~~rd~lY~LAl 95 (164)
+|+.+++++=.-|+.. ..++. +.-.+-.+=.+-. +..-+++.++|.+.|++.+..-+. ..-.|+++--++
T Consensus 125 sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y-aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgL 203 (288)
T KOG1586|consen 125 SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY-AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGL 203 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHH
Confidence 6666777766666665 22221 2222222222222 235788999999999988753221 133688888899
Q ss_pred HHHhhcchHHHHHHHHHHHhhCCCc---HHHHHHHHHHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIAPDW---RQALGLKKTVE 131 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~eP~n---~Qa~~L~~~Ie 131 (164)
.|.-..|--.+.+.++.-.+++|.. |..+-|+.+++
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 9999899999999999999999985 45555555554
No 347
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.36 E-value=80 Score=16.71 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 90 LYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 90 lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
+-.+--++.+.|+.+.|.+.++.+.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34566788899999999998888765
No 348
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=32.86 E-value=86 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=19.8
Q ss_pred HHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 113 CLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
+|.++|=++|..+|...+++-+..
T Consensus 30 ~ldv~pi~Eqi~kLe~~vddl~~s 53 (108)
T COG4062 30 FLDVDPIEEQIKKLETLVDDLENS 53 (108)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhc
Confidence 357889999999999999887653
No 349
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=32.80 E-value=3.6e+02 Score=25.79 Aligned_cols=98 Identities=18% Similarity=0.093 Sum_probs=74.2
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH-HhhCCC
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC-LEIAPD 119 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l-L~~eP~ 119 (164)
+++++..+-+..-+.+++ ..++..++..+|.++-.. -.+.++.+.--..|-...-.+++..|+.+...+ ...-|.
T Consensus 57 s~~~~~~~~~llAa~al~---~e~k~~qA~~Ll~ql~~~-Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~ 132 (604)
T COG3107 57 SSGEQQNDWLLLAARALV---EEGKTAQAQALLNQLPQE-LTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQ 132 (604)
T ss_pred cCchhhhhHHHHHHHHHH---HcCChHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCH
Confidence 555556666677789999 788889999999996643 456788888888888888999999999997665 456688
Q ss_pred cHHHHHHHHHHHhHhhhhhHHHH
Q 031176 120 WRQALGLKKTVEDRIAKDGVIGI 142 (164)
Q Consensus 120 n~Qa~~L~~~Ie~~~~~dGliG~ 142 (164)
|+|++-.+-.+.-.-.++-.++.
T Consensus 133 ~Qq~Ry~q~~a~a~ea~~~~~~a 155 (604)
T COG3107 133 NQQARYYQARADALEARGDSIDA 155 (604)
T ss_pred HHHHHHHHHHHHHHhcccchHHH
Confidence 88888877776655555444443
No 350
>PF11181 YflT: Heat induced stress protein YflT
Probab=32.60 E-value=24 Score=25.25 Aligned_cols=32 Identities=38% Similarity=0.653 Sum_probs=21.0
Q ss_pred hhhhhhhccccc-CCCCCCC------CCHHHHHHHHHHH
Q 031176 6 SKFFDSIGSFFT-GGDQIPW------CDRDIIAGCEREV 37 (164)
Q Consensus 6 ~~~~~~~~~~~~-~~~~lp~------~~~~~l~~~e~~y 37 (164)
+.+++.|.+||+ +++.+.. .+.++..+++++.
T Consensus 56 ~~~~d~~~~~f~~~~d~~~~~l~~lGl~~~ea~~y~~~l 94 (103)
T PF11181_consen 56 ESFWDKIKNFFTSGGDELRSKLESLGLSEDEAERYEEEL 94 (103)
T ss_pred ccHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 468899999999 5555544 4556666555543
No 351
>PRK08878 adenosylcobinamide-phosphate synthase; Provisional
Probab=32.36 E-value=1.9e+02 Score=25.23 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=35.8
Q ss_pred hhcchHHHHHHHHHHHhhCCCcHHHHHHHH-HHHhHhh--hhhHHHHHHHHHHHHHHHHH
Q 031176 99 RTGEYAKSRQILEQCLEIAPDWRQALGLKK-TVEDRIA--KDGVIGIGITATAVGLIAGG 155 (164)
Q Consensus 99 kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~-~Ie~~~~--~dGliG~~i~~~a~~~~~g~ 155 (164)
+.||-+.||++...+...+.++-....+.+ .||.... .||+++...=. +++|..|+
T Consensus 117 ~~gdl~~AR~~l~~iV~Rdt~~L~~~~i~rA~iEs~aen~~d~v~ApLFwf-~l~G~~gA 175 (317)
T PRK08878 117 AKEDKAQARELLKPYVNRDTETLSLLGLGKAGAETIIMGYGRNVIGVLFWY-GIAGGIGA 175 (317)
T ss_pred HcCCHHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHccccchHHHHHH-HHHhHHHH
Confidence 467999999999999989987665555543 3444333 38888764422 23444443
No 352
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=32.31 E-value=3.1e+02 Score=23.15 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=32.3
Q ss_pred hcccccCCCCCCCCCHHHHHHHHHHHHHH---h--cCCCchHHHHHHHHHHH
Q 031176 12 IGSFFTGGDQIPWCDRDIIAGCEREVAEA---N--DDKQKSESIMRLSWALV 58 (164)
Q Consensus 12 ~~~~~~~~~~lp~~~~~~l~~~e~~y~~~---~--~~~~s~~~~F~yA~aLi 58 (164)
|++||.++-..|.+. +|.++|.+.++. . ..+.-.+.+|+|..+-+
T Consensus 1 mG~~f~K~~~~~~~~--~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~sl 50 (251)
T COG5415 1 MGSRFDKDFVTKYTA--DLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSL 50 (251)
T ss_pred CCccccccccccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 578999999999986 899999999887 1 12223567777754433
No 353
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.20 E-value=85 Score=27.10 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
|+=+-|+.|.|+++++.+..-|.++|++.|+
T Consensus 46 Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 46 YYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred hhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 3334444444444444444444444444443
No 354
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=31.89 E-value=59 Score=26.56 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=17.6
Q ss_pred HHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 112 QCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
..|++--..+|+.+++..+.+-++
T Consensus 24 ~VLRhv~~~~~av~~eY~vsNiis 47 (188)
T PF12304_consen 24 TVLRHVSNPKDAVTLEYAVSNIIS 47 (188)
T ss_pred HHHHhhccccccceehhhHHHHHH
Confidence 356666677888888888887654
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=31.68 E-value=2.6e+02 Score=22.10 Aligned_cols=86 Identities=15% Similarity=0.003 Sum_probs=66.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 54 SWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 54 A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
.|.=+.+.++.|++.=+.-|+- ++ ++..+.-.+-++.|.+.|+|++|.+..+.+-.-.|..+-++.|+...=..
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrv-Lr-----P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRV-LR-----PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-hC-----CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 3333335566666655544433 33 35568888999999999999999999999999999999999999998888
Q ss_pred hhhhhHHHHHHH
Q 031176 134 IAKDGVIGIGIT 145 (164)
Q Consensus 134 ~~~dGliG~~i~ 145 (164)
....++-+.+-.
T Consensus 91 l~Dp~Wr~~A~~ 102 (153)
T TIGR02561 91 KGDAEWHVHADE 102 (153)
T ss_pred cCChHHHHHHHH
Confidence 888888876654
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.46 E-value=1.7e+02 Score=22.66 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 031176 23 PWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLA 78 (164)
Q Consensus 23 p~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~ 78 (164)
...|++.+....+..++...-.|.+....+|+..+. ..++.++|-..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~---~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALA---LLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Confidence 346777787777777777666778999999999999 55666677777666444
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.90 E-value=3.2e+02 Score=27.53 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchH----HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQR----EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~r----d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
++.....|||.+..--+.++.+.-|.-++..+... +....+ +.--.-|+.....++.++|..+++..|+.-|.|.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~-~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAP-MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcC-cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 68899999999997777778888888777766641 111222 2334557777889999999999999999999987
No 358
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=1.1e+02 Score=26.29 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 62 QAEDVQRGIAMLEASLAN-SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~-~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
.......+....+.++.- -.+|...|| -+.+|.++|-|.-|++-.+..++.-|+.+-+..++..+.+-
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirD----rGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~l 261 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRD----RGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLEL 261 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccC----cHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 344555566555555553 123433343 47888999999999999999999999999999998887653
No 359
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.69 E-value=2e+02 Score=23.64 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-hhcchHHHHHHHHHHHhhCCCc--HHHHHHHHHHHhHhhh
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYY-RTGEYAKSRQILEQCLEIAPDW--RQALGLKKTVEDRIAK 136 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~-kl~~Y~~A~~~~~~lL~~eP~n--~Qa~~L~~~Ie~~~~~ 136 (164)
.+-..+.+..+.+++.. ++.-..|=...|+++|- -.+.+-.|.+.+....+.++.+ .....+-+...+++..
T Consensus 14 ~eRy~dmv~~mk~~~~~--~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie~ 88 (236)
T PF00244_consen 14 AERYDDMVEYMKQLIEM--NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIED 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHT--SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHHH
Confidence 34556666777776664 34445566667777773 4566666666666666666654 4555555555555554
No 360
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=30.48 E-value=1.8e+02 Score=30.99 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
...+.+|.++|+..+++- .+.+..|-.++-...+..+=+.|+..++++|+.-|. +|...+-.
T Consensus 1543 ~ek~~~A~ell~~m~KKF---~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~Is 1604 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKF---GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFIS 1604 (1710)
T ss_pred hhcchhHHHHHHHHHHHh---cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHH
Confidence 345678999999988872 267899999999999999999999999999999999 44444433
No 361
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=30.40 E-value=2.3e+02 Score=21.13 Aligned_cols=27 Identities=4% Similarity=0.123 Sum_probs=20.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhCCCCC
Q 031176 54 SWALVHSRQAEDVQRGIAMLEASLANSSPP 83 (164)
Q Consensus 54 A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~ 83 (164)
|+..+ ..++-.+|.+++|+++..+++.
T Consensus 3 A~~~~---~rGnhiKAL~iied~i~~h~~~ 29 (111)
T PF04781_consen 3 AKDYF---ARGNHIKALEIIEDLISRHGED 29 (111)
T ss_pred HHHHH---HccCHHHHHHHHHHHHHHccCC
Confidence 45555 6778889999999999874433
No 362
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=30.28 E-value=99 Score=26.60 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
-+|=-.+.+.++++.|.++.+++|.+.|+++
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp 215 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDP 215 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCCh
Confidence 3444567788999999999999999999998
No 363
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=30.01 E-value=61 Score=27.98 Aligned_cols=8 Identities=38% Similarity=0.680 Sum_probs=3.9
Q ss_pred hhHHHHHH
Q 031176 137 DGVIGIGI 144 (164)
Q Consensus 137 dGliG~~i 144 (164)
-+++|+||
T Consensus 155 GAa~Gagi 162 (292)
T PF11981_consen 155 GAAAGAGI 162 (292)
T ss_pred HHHHhHHH
Confidence 44455554
No 364
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=29.90 E-value=2e+02 Score=25.02 Aligned_cols=14 Identities=21% Similarity=0.257 Sum_probs=8.6
Q ss_pred HHHHHHhhCCCcHH
Q 031176 109 ILEQCLEIAPDWRQ 122 (164)
Q Consensus 109 ~~~~lL~~eP~n~Q 122 (164)
.-+.+|+.-|...+
T Consensus 59 ~~~~FL~~Fp~~k~ 72 (313)
T PF05461_consen 59 DRERFLKEFPQLKE 72 (313)
T ss_pred HHHHHHHHhHHHHH
Confidence 35667777776543
No 365
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=29.65 E-value=3.2e+02 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
+-||+...|+|+..+|.+....+++..|.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 56999999999999999999999999887
No 366
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=29.59 E-value=96 Score=28.50 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH----HHHHHhhCCCcHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI----LEQCLEIAPDWRQA 123 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~----~~~lL~~eP~n~Qa 123 (164)
..+..-+.-|.+|+ +..+++..-.+.+.+-.+...+---+=+|+.++.++|+|++++.+ ++.++..+-...|.
T Consensus 7 k~q~~~g~~Ly~s~---~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSN---QTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred HHHHHHHHhHhcCc---hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666444 233333333333332122233334555777778888888887777 34444444444443
Q ss_pred HH
Q 031176 124 LG 125 (164)
Q Consensus 124 ~~ 125 (164)
.+
T Consensus 84 ea 85 (518)
T KOG1941|consen 84 EA 85 (518)
T ss_pred HH
Confidence 33
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.54 E-value=2.9e+02 Score=25.63 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHhc--CChhHHHHHHHHHHHHhh-------CCCCCCchHHHHHHHHHHHHhh----c-chHHHHHHH
Q 031176 45 QKSESIMRLSWALVHS--RQAEDVQRGIAMLEASLA-------NSSPPLQQREKLYLLAVGYYRT----G-EYAKSRQIL 110 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S--~~~~d~~~gi~lLe~ll~-------~~~~~~~~rd~lY~LAlg~~kl----~-~Y~~A~~~~ 110 (164)
-...++..+++++... ..++|.+.++..|+...+ . +.| -..|-|+..|++. . |+++|++++
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~~~----~a~~~lg~~Y~~g~~~~~~d~~~A~~~~ 316 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-GLP----PAQYGLGRLYLQGLGVEKIDYEKALKLY 316 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-cCC----ccccHHHHHHhcCCCCccccHHHHHHHH
Confidence 3667778888888866 456799999999988766 3 222 4667788888874 3 889999998
Q ss_pred HHHHhhCCCcHHHH
Q 031176 111 EQCLEIAPDWRQAL 124 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~ 124 (164)
..+=+....+-|..
T Consensus 317 ~~aA~~g~~~a~~~ 330 (552)
T KOG1550|consen 317 TKAAELGNPDAQYL 330 (552)
T ss_pred HHHHhcCCchHHHH
Confidence 88877776655543
No 368
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=29.19 E-value=96 Score=21.06 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhh
Q 031176 149 VGLIAGGIAAALAR 162 (164)
Q Consensus 149 ~~~~~g~~~~a~~r 162 (164)
+|+++ +++.++.|
T Consensus 68 ~Gl~l-gi~~~~~r 80 (82)
T PF13807_consen 68 LGLIL-GIGLAFLR 80 (82)
T ss_pred HHHHH-HHHHHHHh
Confidence 44555 45777665
No 369
>TIGR00380 cobD cobalamin biosynthesis protein CobD. This protein is involved in cobalamin (vitamin B12) biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon.
Probab=29.05 E-value=2.7e+02 Score=24.14 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=33.4
Q ss_pred hhcchHHHHHHHHHHHhhCCCcHHHHHHHHH-HHhHhhh--hhHHHHHHH
Q 031176 99 RTGEYAKSRQILEQCLEIAPDWRQALGLKKT-VEDRIAK--DGVIGIGIT 145 (164)
Q Consensus 99 kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~-Ie~~~~~--dGliG~~i~ 145 (164)
+.||-++||+.+..+...|.++-....+.+. ||.-... ||+++...-
T Consensus 114 ~~gdl~~AR~~l~~iv~Rdt~~Ls~~~i~ra~iEs~aen~~d~~~aplF~ 163 (305)
T TIGR00380 114 KAGDLETARKKLQMIVSRDTNNLSEEQILSAAVESVAENIVDGVTAPLFY 163 (305)
T ss_pred HcCCHHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4578999999999999988887655555444 4444333 888876553
No 370
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=28.78 E-value=3.1e+02 Score=22.08 Aligned_cols=70 Identities=30% Similarity=0.300 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGI 142 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~ 142 (164)
..|+.++|++||.+-+...-|+.. +..+++.|+.+ -+.-.++.-+.+-+-+.-+|---+
T Consensus 11 erdv~r~ielleklq~sgevp~~k--------------------l~alq~vlqse-f~~avrevye~vyetidi~~s~ei 69 (207)
T KOG3550|consen 11 ERDVQRAIELLEKLQRSGEVPPQK--------------------LQALQKVLQSE-FCTAVREVYEHVYETIDIDGSPEI 69 (207)
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHH--------------------HHHHHHHHHHH-HHHHHHHHHHHHHhhcccCCChHH
Confidence 468999999999977763333322 23444555544 233444555555555555665555
Q ss_pred HHHHHHHHHHH
Q 031176 143 GITATAVGLIA 153 (164)
Q Consensus 143 ~i~~~a~~~~~ 153 (164)
-..++|=+-|+
T Consensus 70 ra~atakatva 80 (207)
T KOG3550|consen 70 RAAATAKATVA 80 (207)
T ss_pred hhhhhhHHHHH
Confidence 44444433333
No 371
>PF02479 Herpes_IE68: Herpesvirus immediate early protein; InterPro: IPR003403 This regulatory protein is expressed from an immediate early gene in the cell cycle of Herpesviridae. The protein is known by various names including IE-68, US1, ICP22 and IR4.
Probab=28.70 E-value=65 Score=24.87 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhh
Q 031176 106 SRQILEQCLEIAPDWRQALGLKKTVEDRIAKD 137 (164)
Q Consensus 106 A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~d 137 (164)
...+|+.+||+-|+. +.-|+..|.+...+.
T Consensus 78 ~~~~We~lLQlsp~q--s~~LR~tLr~~~~r~ 107 (132)
T PF02479_consen 78 TPACWERLLQLSPEQ--SRRLRRTLREADSRS 107 (132)
T ss_pred CHHHHHHHHhhCccc--chHHHHHHHHHHccC
Confidence 357899999999974 999999998877664
No 372
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=28.10 E-value=3.8e+02 Score=22.91 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=26.5
Q ss_pred cCChhHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHhhc
Q 031176 60 SRQAEDVQRGIAMLEASLANS----SPPLQQREKLYLLAVGYYRTG 101 (164)
Q Consensus 60 S~~~~d~~~gi~lLe~ll~~~----~~~~~~rd~lY~LAlg~~kl~ 101 (164)
|...+++.++...+...+... .++.+.-+++|-|+--.-|.|
T Consensus 48 s~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l~~la~~aR~~G 93 (282)
T TIGR03818 48 ANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLLYELLRKARREG 93 (282)
T ss_pred hCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 666778888888887777541 022344556677777666655
No 373
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.09 E-value=1.4e+02 Score=28.26 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
...|+|...++-.+..+..++.+.+...=... .+.......+|--++-.|+.++|.+|+++....|++.
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 44566777776665566655555543210000 0011223456778899999999999999999999987
No 374
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=27.92 E-value=3.8e+02 Score=22.85 Aligned_cols=93 Identities=13% Similarity=0.212 Sum_probs=63.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHH-HHHHHHHHhhc-----chH---HHHHHHHHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKL-YLLAVGYYRTG-----EYA---KSRQILEQC 113 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~l-Y~LAlg~~kl~-----~Y~---~A~~~~~~l 113 (164)
++-+.+++..++++.. +.++...|+..++..++.....++. |+. |..+++++..= |.. +|....+.+
T Consensus 67 s~~~~qa~l~l~yA~Y---k~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~ 142 (254)
T COG4105 67 SPYSEQAQLDLAYAYY---KNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKEL 142 (254)
T ss_pred CcccHHHHHHHHHHHH---hcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHH
Confidence 3447999999999999 6667778888888878764333444 555 55567766543 333 456668889
Q ss_pred HhhCCCcHHHHHHHHHHHhHhhhhhHHH
Q 031176 114 LEIAPDWRQALGLKKTVEDRIAKDGVIG 141 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~Ie~~~~~dGliG 141 (164)
++.-|+-+=+..-+..|.. .+|.|-|
T Consensus 143 i~ryPnS~Ya~dA~~~i~~--~~d~LA~ 168 (254)
T COG4105 143 VQRYPNSRYAPDAKARIVK--LNDALAG 168 (254)
T ss_pred HHHCCCCcchhhHHHHHHH--HHHHHHH
Confidence 9999998866665555543 2345554
No 375
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.72 E-value=1.1e+02 Score=28.92 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
|..--||--.+..|||.=+-+.++++.--+|+|+||+.|..-.-+.
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQ 498 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQ 498 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHH
Confidence 5566788889999999999999999999999999999998655443
No 376
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=27.64 E-value=2.6e+02 Score=26.03 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
++.++...-.+-+.+--|||..|+.-.+.+.+.+|..+-+.-| .-||..
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLl-AdIeeA 374 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLL-ADIEEA 374 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHH-HHHHhh
Confidence 4557889999999999999999999999999999988766544 444443
No 377
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=27.50 E-value=1.5e+02 Score=23.24 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=10.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 031176 54 SWALVHSRQAEDVQRGIAMLEA 75 (164)
Q Consensus 54 A~aLi~S~~~~d~~~gi~lLe~ 75 (164)
+|=-.+|-+..-.+-+.++++-
T Consensus 42 a~YQAKsiK~~l~e~~~~~l~~ 63 (157)
T PF14235_consen 42 AYYQAKSIKQHLAELAADLLEL 63 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444455555555544
No 378
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=27.49 E-value=87 Score=21.40 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHH
Q 031176 137 DGVIGIGITATA 148 (164)
Q Consensus 137 dGliG~~i~~~a 148 (164)
+|+.|+-|+...
T Consensus 11 nGi~G~LIAvvL 22 (66)
T PF13179_consen 11 NGITGMLIAVVL 22 (66)
T ss_pred cchHhHHHHHHH
Confidence 799998886433
No 379
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=27.46 E-value=93 Score=24.73 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=32.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHhH
Q 031176 92 LLAVGYYRTGEYAKSRQILEQCLEIAPDWR-------QALGLKKTVEDR 133 (164)
Q Consensus 92 ~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~-------Qa~~L~~~Ie~~ 133 (164)
.=+|+...-|+.+.|++-..+.|.+-|++. |+..|+...++.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~A 96 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEA 96 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHH
Confidence 346777888999999999999999999865 666665555443
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.15 E-value=4.4e+02 Score=23.27 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch-HHHHHHHHHH--HHhhcchHHHHHHHHHHHhhC
Q 031176 51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ-REKLYLLAVG--YYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~-rd~lY~LAlg--~~kl~~Y~~A~~~~~~lL~~e 117 (164)
...+-.+. +..+...|..+|+++... -|.+. -+.+..|+.| ++-.-+|.+|.++.+.++...
T Consensus 135 ~~~a~~l~---n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 135 WRRAKELF---NRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 34455555 788999999999998875 13233 2567777555 467889999999999988763
No 381
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=27.05 E-value=52 Score=27.37 Aligned_cols=9 Identities=33% Similarity=0.446 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 031176 87 REKLYLLAV 95 (164)
Q Consensus 87 rd~lY~LAl 95 (164)
.++.|.|-.
T Consensus 58 ~~A~Y~lq~ 66 (215)
T PF05818_consen 58 DEAHYWLQA 66 (215)
T ss_pred hhCeEEEEe
Confidence 455555543
No 382
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=26.95 E-value=69 Score=21.78 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=12.0
Q ss_pred hhhhhcc-cccCCCCCCC
Q 031176 8 FFDSIGS-FFTGGDQIPW 24 (164)
Q Consensus 8 ~~~~~~~-~~~~~~~lp~ 24 (164)
.|+..+. .|+|...||.
T Consensus 3 NFKkFkKv~~pGa~~lP~ 20 (65)
T PF08599_consen 3 NFKKFKKVAYPGAGGLPH 20 (65)
T ss_pred chhhhcccccCCCCCCCe
Confidence 4444444 7888888997
No 383
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=26.89 E-value=1e+02 Score=21.18 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH------hcCCCchHHHHHHHHHHH
Q 031176 27 RDIIAGCEREVAEA------NDDKQKSESIMRLSWALV 58 (164)
Q Consensus 27 ~~~l~~~e~~y~~~------~~~~~s~~~~F~yA~aLi 58 (164)
.+++..+=+.|.+- ..|..+.=..|.|||+++
T Consensus 28 a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 28 AEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34444444444443 456668899999999998
No 384
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.83 E-value=5.2e+02 Score=24.06 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHH----hcCCCchHHHH-HH--HHHHHh--cCChhHHHHHHHHHHHHhhCC---CCCCchH
Q 031176 20 DQIPWCDRDIIAGCEREVAEA----NDDKQKSESIM-RL--SWALVH--SRQAEDVQRGIAMLEASLANS---SPPLQQR 87 (164)
Q Consensus 20 ~~lp~~~~~~l~~~e~~y~~~----~~~~~s~~~~F-~y--A~aLi~--S~~~~d~~~gi~lLe~ll~~~---~~~~~~r 87 (164)
|.+|..-.+++...+++..+. ..++.+-.+-= .| +-.-+. ..+..|+..+..+++.++... ......-
T Consensus 440 pgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V 519 (569)
T PRK04778 440 PGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEV 519 (569)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence 555554444555445444444 34554433222 22 211111 246788999999999888741 0112334
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHH-hhCCC
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCL-EIAPD 119 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL-~~eP~ 119 (164)
+--+--|.-+|+.++|++|+..+..+| +++|+
T Consensus 520 ~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG 552 (569)
T PRK04778 520 AEALNEAERLFREYDYKAALEIIATALEKVEPG 552 (569)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCc
Confidence 556788888999999999999995554 67887
No 385
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=26.70 E-value=83 Score=23.21 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=19.7
Q ss_pred hcchHHHHHHHHHH-----HhhCCC--cHHHHHHHHHHHh
Q 031176 100 TGEYAKSRQILEQC-----LEIAPD--WRQALGLKKTVED 132 (164)
Q Consensus 100 l~~Y~~A~~~~~~l-----L~~eP~--n~Qa~~L~~~Ie~ 132 (164)
...|.+|++|+..+ ..-+|+ |.=.+.||+.+..
T Consensus 40 ~~~y~kalecl~~lR~~~i~~~ep~~yN~Fl~~LK~~~~~ 79 (120)
T PF08785_consen 40 DQNYDKALECLRALREECIEEEEPDEYNDFLRKLKKKLLS 79 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 34567777776554 334466 6667777776654
No 386
>COG1270 CbiB Cobalamin biosynthesis protein CobD/CbiB [Coenzyme metabolism]
Probab=26.61 E-value=2.2e+02 Score=25.13 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=37.0
Q ss_pred HHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH-HHHhHhhh--hhHHHHHHH
Q 031176 97 YYRTGEYAKSRQILEQCLEIAPDWRQALGLKK-TVEDRIAK--DGVIGIGIT 145 (164)
Q Consensus 97 ~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~-~Ie~~~~~--dGliG~~i~ 145 (164)
.-+.+|-+.||+.+..+-.-||++-...++-+ .||.-... ||+++-..=
T Consensus 112 ~L~~gdl~~aR~~ls~iV~RDts~L~~~~i~~AaIES~aEN~~DgvvaPLF~ 163 (320)
T COG1270 112 ALRRGDLEGARRALSMIVGRDTSKLSEAEIASAAIESLAENLVDGVVAPLFW 163 (320)
T ss_pred HHHhCCHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 45778899999999999999999876666544 45554443 999886553
No 387
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=26.26 E-value=29 Score=30.55 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=16.6
Q ss_pred hhhhhHHHHH--HHHHHHHHHHHHHHHHHhhc
Q 031176 134 IAKDGVIGIG--ITATAVGLIAGGIAAALARK 163 (164)
Q Consensus 134 ~~~dGliG~~--i~~~a~~~~~g~~~~a~~r~ 163 (164)
++||+=.-+- |.++++|+++| ++.++.|+
T Consensus 309 v~rD~Pkr~lIlil~~llG~~lg-~~~vL~r~ 339 (342)
T PRK11638 309 VKRDSPRRAFLMIMWGAVGALVG-AGVALTRR 339 (342)
T ss_pred cccCCCchhHHHHHHHHHHHHHH-heeeEeec
Confidence 4556654432 33555677775 46777775
No 388
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.04 E-value=91 Score=29.92 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=27.8
Q ss_pred HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVG 150 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~a~~ 150 (164)
.+...++|++=+++++.+..---.- -...+.|-|+||+++++.++|
T Consensus 30 ~l~~~~~~~~i~k~I~~L~~d~a~s---------~~~n~rkGgLiGlAA~~iaLg 75 (675)
T KOG0212|consen 30 DLVNNNDYDQIRKVISELAGDYAYS---------PHANMRKGGLIGLAAVAIALG 75 (675)
T ss_pred HHHccCcHHHHHHHHHHHHHHhccC---------cccccccchHHHHHHHHHHhc
Confidence 4556667777666666554321111 113456699999999877665
No 389
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.84 E-value=3.5e+02 Score=27.22 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh-----------hcchHHHHHHHH
Q 031176 65 DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR-----------TGEYAKSRQILE 111 (164)
Q Consensus 65 d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k-----------l~~Y~~A~~~~~ 111 (164)
|++.++++|.+ .+-.|--+|||.-+-+ +++|++|++|+.
T Consensus 465 d~e~al~Ilr~--------snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 465 DVETALEILRK--------SNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred eHHHHHHHHHH--------hChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHh
Confidence 45566666544 1224555777776666 899999999965
No 390
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.25 E-value=49 Score=28.32 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhhc
Q 031176 139 VIGIGITATAV--GLIAGGIAAALARK 163 (164)
Q Consensus 139 liG~~i~~~a~--~~~~g~~~~a~~r~ 163 (164)
+||+||+.|.+ -+++ +++.+..||
T Consensus 231 lIslAiALG~v~ll~l~-Gii~~~~~r 256 (281)
T PF12768_consen 231 LISLAIALGTVFLLVLI-GIILAYIRR 256 (281)
T ss_pred EEehHHHHHHHHHHHHH-HHHHHHHHh
Confidence 34555543222 2233 344454444
No 391
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=25.04 E-value=1.6e+02 Score=20.53 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 101 GEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 101 ~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
..++=|..=+..-|...|+|++|.+.-+...++.
T Consensus 9 ~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~ 42 (78)
T PF12652_consen 9 QEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQR 42 (78)
T ss_pred HHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 3344455556777899999999998877776553
No 392
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=24.90 E-value=1.5e+02 Score=25.55 Aligned_cols=41 Identities=22% Similarity=0.099 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
....+++-++-.+.-.++++.+...+++++..+|-|+++..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~ 191 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYL 191 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHH
Confidence 44688899999999999999999999999999999987654
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=24.77 E-value=1.5e+02 Score=28.38 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
=++-|-|+...-++||..|++||+++=+++
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 777 YALKYAALNAMHLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHhcc
Confidence 456688899999999999999999998864
No 394
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=24.71 E-value=1.1e+02 Score=23.60 Aligned_cols=39 Identities=15% Similarity=0.008 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
..+-.|++-||.+.-.+|+-+++.+|.+-+-..+|.--+
T Consensus 89 rGfLRal~aLa~AA~~IGE~dE~~Rc~~~L~Dsdp~A~~ 127 (129)
T PF11349_consen 89 RGFLRALAALARAAQAIGETDEYDRCRQFLRDSDPEAAD 127 (129)
T ss_pred cHHHHHHHHHHHHHHHhCChhHHHHHHHHHHhCCHHhHh
Confidence 345689999999999999999999999999999886443
No 395
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=24.41 E-value=4.4e+02 Score=22.29 Aligned_cols=77 Identities=8% Similarity=0.060 Sum_probs=39.0
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhC-CCCCCchHHHHHHHHHHHHhhcchH-H------HHHHHHHHHhhCCCcHHHHHHH
Q 031176 56 ALVHSRQAEDVQRGIAMLEASLAN-SSPPLQQREKLYLLAVGYYRTGEYA-K------SRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 56 aLi~S~~~~d~~~gi~lLe~ll~~-~~~~~~~rd~lY~LAlg~~kl~~Y~-~------A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
.++ |...+++.++...+...+.. ..++.+.-+.+|.+|.-.-|.|=.. + .-.++...|++--+......++
T Consensus 44 ~li-~~p~~~i~~~~k~~~~~f~~~~~~~~~~i~~l~~la~~aRr~GlLaLE~~~~~~~d~fl~~gl~l~vdg~~~e~i~ 122 (254)
T PRK06743 44 IVV-AYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFVDFSKKSKKHGLLSLEVDGEQVDNPFIQKGIRLMLSGYDEDELK 122 (254)
T ss_pred HHH-hCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCHHHHHhhccCCccHHHHHHHHHHHCCCCHHHHH
Confidence 344 55567777777777776642 1233444555677776655554221 0 0134555555333333444555
Q ss_pred HHHHhH
Q 031176 128 KTVEDR 133 (164)
Q Consensus 128 ~~Ie~~ 133 (164)
+.+++.
T Consensus 123 ~~le~~ 128 (254)
T PRK06743 123 EVLMKD 128 (254)
T ss_pred HHHHHH
Confidence 555544
No 396
>PRK03954 ribonuclease P protein component 4; Validated
Probab=24.24 E-value=1.3e+02 Score=22.69 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
++-++||.+|...+ ..+++-|+.|+..+-.+
T Consensus 20 eRi~~L~~~A~~~~-~~~pelar~Yv~lar~I 50 (121)
T PRK03954 20 ERIDTLFTLAERVF-PYSPELANRYVELALAV 50 (121)
T ss_pred HHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHH
Confidence 34588999998888 45889999999887654
No 397
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=24.05 E-value=2e+02 Score=21.32 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=32.4
Q ss_pred HHHhhcchHHHHHHHHHHH-hhCCCcHHHHHHHHHHHhHhhhh
Q 031176 96 GYYRTGEYAKSRQILEQCL-EIAPDWRQALGLKKTVEDRIAKD 137 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL-~~eP~n~Qa~~L~~~Ie~~~~~d 137 (164)
++-|+.||..|.++.+.+= +..+...|+.-+.+.|+--+..=
T Consensus 51 AcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l~EL 93 (103)
T cd00923 51 ACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKPTLKEL 93 (103)
T ss_pred HHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHHHHH
Confidence 5678999999999999877 45445567888888887766543
No 398
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.02 E-value=3.1e+02 Score=20.41 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC--------chHHH
Q 031176 18 GGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL--------QQREK 89 (164)
Q Consensus 18 ~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~--------~~rd~ 89 (164)
+++.++.+|++-+..+=+..+. +...+.-..+----=+++.++..+..++.+|+.++++ .++. .+-+.
T Consensus 14 Ts~~~~~~Dw~~~l~icD~i~~---~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkN-cg~~f~~ev~~~~fl~~ 89 (140)
T PF00790_consen 14 TSESLPSPDWSLILEICDLINS---SPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKN-CGPRFHREVASKEFLDE 89 (140)
T ss_dssp T-TTSSS--HHHHHHHHHHHHT---STTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH-SHHHHHHHHTSHHHHHH
T ss_pred hCcCCCCCCHHHHHHHHHHHHc---CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHhHHHHHHH
Confidence 3466777888777664333333 2233333333333334568899999999999999986 3221 11122
Q ss_pred HHHHHHHHHhhcc---hHHHH---HHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 90 LYLLAVGYYRTGE---YAKSR---QILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 90 lY~LAlg~~kl~~---Y~~A~---~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
++-|....+.... -++++ ..|...++-+|+-+...++.+.+.+
T Consensus 90 l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk~ 138 (140)
T PF00790_consen 90 LVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRLKR 138 (140)
T ss_dssp HHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHHH
T ss_pred HHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Confidence 2222222221111 12333 3466666777777777766665543
No 399
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=23.73 E-value=1.2e+02 Score=20.54 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=14.6
Q ss_pred HHHhHhhhhhHHHHHHHH
Q 031176 129 TVEDRIAKDGVIGIGITA 146 (164)
Q Consensus 129 ~Ie~~~~~dGliG~~i~~ 146 (164)
.+++.+.+=|++|+.+.|
T Consensus 5 ~~~~~l~ri~ViGVt~mA 22 (72)
T PF12537_consen 5 YIENVLSRIGVIGVTLMA 22 (72)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 467788889999988876
No 400
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.34 E-value=1.5e+02 Score=21.73 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=16.9
Q ss_pred HhhCCCcHHHHHHHHHHHhHhh
Q 031176 114 LEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
+.++|=|+|...|.+..++-+.
T Consensus 30 ~s~~pi~eqi~kLe~~addl~n 51 (97)
T PF05440_consen 30 VSMDPINEQIDKLEKAADDLVN 51 (97)
T ss_pred EechHHHHHHHHHHHHHHHHHh
Confidence 3567888899888888877654
No 401
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=23.11 E-value=70 Score=27.14 Aligned_cols=19 Identities=5% Similarity=0.247 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHHhhcch
Q 031176 85 QQREKLYLLAVGYYRTGEY 103 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y 103 (164)
++.+++|.|-.--.+.+..
T Consensus 86 ~P~~A~Y~lQaNVL~~~K~ 104 (243)
T PRK13731 86 SPDKAYYWIQANVLKADKM 104 (243)
T ss_pred ChhhceeeeeeeehhcccC
Confidence 4467888876655555544
No 402
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=23.08 E-value=3.7e+02 Score=21.02 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.-|.+...|-+.+++|+.+.|+.+++++-+-
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577777788888888888888888876643
No 403
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.86 E-value=4e+02 Score=21.34 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=49.3
Q ss_pred hhhhhhhhcc-cccCCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC
Q 031176 5 ISKFFDSIGS-FFTGGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP 83 (164)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~ 83 (164)
+.++.+.+++ ++.+..+....|+-.++.+=+.|-++-.++--+...+..-.......+..+ -+.-+..++.. -|
T Consensus 53 i~~l~~~ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~--LP 127 (216)
T cd04391 53 VKFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKD---QLQALNLLVLL--LP 127 (216)
T ss_pred HHHHHHHHhcccccCccccccCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHH---HHHHHHHHHHH--CC
Confidence 4445555554 444445555688889999999999984443323333332222222222323 33334444442 36
Q ss_pred CchHHHHHHHHHHHHhhc
Q 031176 84 LQQREKLYLLAVGYYRTG 101 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~ 101 (164)
...++.+.||---..+.-
T Consensus 128 ~~n~~~L~~L~~~L~~V~ 145 (216)
T cd04391 128 EANRDTLKALLEFLQKVV 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666788877765554443
No 404
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.61 E-value=7.5e+02 Score=24.36 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred CCchHH-HHHHHHHHHHhhcchHHHHHHH
Q 031176 83 PLQQRE-KLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 83 ~~~~rd-~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
....|| .---++-.||.+|+|++|.+|.
T Consensus 54 sf~~remaaL~~SKvYy~LgeY~~Ai~yA 82 (926)
T COG5116 54 SFDPREMAALCLSKVYYVLGEYQQAIEYA 82 (926)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334454 3346788999999999999983
No 405
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.60 E-value=4.3e+02 Score=26.63 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 52 RLSWALVH-SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 52 ~yA~aLi~-S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
...|+-.| --...+-..|+++...-... +-..+=.+|.||-.++..||+++|....+.+...--+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~---~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQ---PLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccc---hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 33444443 22344556777776553332 4344444568999999999999999998877665433
No 406
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=22.58 E-value=3.6e+02 Score=21.43 Aligned_cols=27 Identities=37% Similarity=0.208 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHhhc
Q 031176 137 DGVIGIGITATAVGLIAGGIAA-ALARK 163 (164)
Q Consensus 137 dGliG~~i~~~a~~~~~g~~~~-a~~r~ 163 (164)
...+.+.++++++++++|+..+ .+.||
T Consensus 158 ~~~~~~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 158 AIWAVIMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666665533 55554
No 407
>PF12417 DUF3669: Zinc finger protein ; InterPro: IPR022137 This domain family is found in eukaryotes, and is typically between 64 and 80 amino acids in length.
Probab=22.49 E-value=1.8e+02 Score=19.65 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=22.3
Q ss_pred hhcccccCCCCCCCCC------HHHHHHHHHHHHHH
Q 031176 11 SIGSFFTGGDQIPWCD------RDIIAGCEREVAEA 40 (164)
Q Consensus 11 ~~~~~~~~~~~lp~~~------~~~l~~~e~~y~~~ 40 (164)
.+.-|++.||..|++- .+--..|+.+|...
T Consensus 22 av~af~~Ndpy~PRp~~~~~~~~~lW~~F~~~Yl~~ 57 (72)
T PF12417_consen 22 AVEAFWRNDPYYPRPLDCEKTDKELWNQFRSRYLET 57 (72)
T ss_pred HHHHhccCCCCCCCCCccchHHHHHHHHHHHHHHHH
Confidence 3444999999999966 66666778888775
No 408
>PRK08456 flagellar motor protein MotA; Validated
Probab=22.19 E-value=4.7e+02 Score=21.87 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=12.8
Q ss_pred cCChhHHHHHHHHHHHHhhC
Q 031176 60 SRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 60 S~~~~d~~~gi~lLe~ll~~ 79 (164)
|....++.++...+...++.
T Consensus 50 ~~~~~~~~~~~~~~~~~f~~ 69 (257)
T PRK08456 50 ATHKKYVKAAYKELKIVFKN 69 (257)
T ss_pred hCCHHHHHHHHHHHHHHhcc
Confidence 45566777777777666643
No 409
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.14 E-value=3.3e+02 Score=22.63 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
+....|-..+ +.++..+|+..|...+..+.|..-..=.=.-||..-+.+|.|++|++.++.
T Consensus 91 aaL~lAk~~v---e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 91 AALELAKAEV---EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHH---hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 3444555555 556666666666665543222211111113455556666666666655544
No 410
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=22.07 E-value=4.4e+02 Score=21.49 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 50 IMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
.=.+|+.. +-+.-+.+.+|+..|+.....
T Consensus 38 A~elA~~~-kGKkIRs~~dAl~s~eK~~~n 66 (187)
T PF01024_consen 38 AKELAEDA-KGKKIRSVDDALKSFEKYKSN 66 (187)
T ss_dssp HHHHHHHH-HTGC---HHHHHHHHHHHHTH
T ss_pred HHHHHHHh-cccccCCHHHHHHHHHHHHhc
Confidence 33444443 356677888999999886664
No 411
>PF11021 DUF2613: Protein of unknown function (DUF2613); InterPro: IPR022566 This is a family of putative small secreted proteins expressed by Actinobacteria. The function is not known.
Probab=22.06 E-value=1.1e+02 Score=20.11 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 031176 140 IGIGITATAVGLIAG 154 (164)
Q Consensus 140 iG~~i~~~a~~~~~g 154 (164)
+|-+++++++|+++|
T Consensus 5 l~pa~aSaV~Gi~lG 19 (56)
T PF11021_consen 5 LGPAAASAVVGIVLG 19 (56)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 412
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=21.88 E-value=5.1e+02 Score=22.18 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCC-hh-HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh
Q 031176 25 CDRDIIAGCEREVAEAND--DKQKSESIMRLSWALVHSRQ-AE-DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT 100 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~~~--~~~s~~~~F~yA~aLi~S~~-~~-d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl 100 (164)
.+.+.+..+.+...+.++ ..-.....|.+|-.|.-+.+ +. -+++-+.+-+.+.+. .-.+..++|..|..-...
T Consensus 33 ~d~~~~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~---gFk~~~y~~laA~~i~~~ 109 (297)
T PF13170_consen 33 FDAERFKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEA---GFKRSEYLYLAALIILEE 109 (297)
T ss_pred CCHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh---ccCccChHHHHHHHHHHh
Confidence 678899999888877621 12245677888777776666 44 455666665555443 345557888888888887
Q ss_pred -------cchHHHHHHHHHHHhhCC
Q 031176 101 -------GEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 101 -------~~Y~~A~~~~~~lL~~eP 118 (164)
....+|+..++.+=+..|
T Consensus 110 ~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 110 EEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCc
Confidence 455666666555544444
No 413
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=21.85 E-value=53 Score=30.33 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhCCCcH
Q 031176 104 AKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~n~ 121 (164)
++|+..++.+|.++|+|+
T Consensus 411 eea~dlI~~mL~VdP~~R 428 (475)
T KOG0615|consen 411 EEALDLINWMLVVDPENR 428 (475)
T ss_pred HHHHHHHHHhhEeCcccC
Confidence 689999999999999998
No 414
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=21.67 E-value=98 Score=27.53 Aligned_cols=16 Identities=0% Similarity=-0.230 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHHH
Q 031176 25 CDRDIIAGCEREVAEA 40 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~ 40 (164)
+++++-...=++|-..
T Consensus 179 ~t~~~A~~lL~~YI~f 194 (377)
T PRK10381 179 PTSEEAQDVLSGYINY 194 (377)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5666666666666655
No 415
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=21.58 E-value=1e+02 Score=23.20 Aligned_cols=24 Identities=4% Similarity=-0.089 Sum_probs=19.3
Q ss_pred hhcchHHHHHHHHHHHhhCCCcHH
Q 031176 99 RTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 99 kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
|..+|.+|+.-++.+.+.+|.|.-
T Consensus 1 r~~nf~kAl~~L~~a~~~~~~~~~ 24 (123)
T TIGR01987 1 KFESFEQALMQLSDANWFDLTNDI 24 (123)
T ss_pred CHHHHHHHHHHHHHHHhcCccchH
Confidence 456899999999999988777753
No 416
>PHA03265 envelope glycoprotein D; Provisional
Probab=21.48 E-value=28 Score=31.28 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhc
Q 031176 139 VIGIGITATAVGL-IAGGIAAALARK 163 (164)
Q Consensus 139 liG~~i~~~a~~~-~~g~~~~a~~r~ 163 (164)
-+|+.|+++++|+ +||.|...+-|+
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr 374 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRR 374 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhh
Confidence 3455444444443 556555555554
No 417
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=21.32 E-value=85 Score=24.45 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHH
Q 031176 15 FFTGGDQIPWCDRDIIAGCERE 36 (164)
Q Consensus 15 ~~~~~~~lp~~~~~~l~~~e~~ 36 (164)
..+.+.+|||.-|+|++.|.+.
T Consensus 13 ~IG~~~~lPW~~~~D~~~Fk~~ 34 (159)
T PRK10769 13 VIGMENAMPWNLPADLAWFKRN 34 (159)
T ss_pred cEecCCCcCcCCHHHHHHHHHH
Confidence 5677889999999999998664
No 418
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=21.28 E-value=1.5e+02 Score=26.93 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
.++.+|++|..+ ++++.|.++..+ .+..++|-.||-...+.|+++-|.+|.++
T Consensus 320 D~~~rFeLAl~l------g~L~~A~~~a~~--------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 320 DPDHRFELALQL------GNLDIALEIAKE--------LDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp -HHHHHHHHHHC------T-HHHHHHHCCC--------CSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred ChHHHhHHHHhc------CCHHHHHHHHHh--------cCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 568999998754 466667666432 23468999999999999999999999765
No 419
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=21.28 E-value=3.7e+02 Score=20.33 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 18 GGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 18 ~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
|++.++.+|++-+..+=+..+. ......++..-.---|-+++++..+..++.+|+.++++
T Consensus 10 Tse~l~~~dw~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkN 69 (141)
T cd03565 10 TDGSLQSEDWGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKN 69 (141)
T ss_pred cCcCCCCcCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 5678899999988886555553 22234455555555565567888889999999999997
No 420
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=21.13 E-value=3.7e+02 Score=20.33 Aligned_cols=49 Identities=6% Similarity=0.098 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 031176 25 CDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEA 75 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ 75 (164)
.+++.|+.+++.| . -+++.+.+.+|+.--..|++....-+....+.|..
T Consensus 49 l~~~~l~~Ld~~y-~-l~~s~NaEI~~rW~~l~i~~~~~~~~~~v~~fL~~ 97 (143)
T PF09127_consen 49 LSPEKLQALDKVY-K-LSNSKNAEIRFRWLRLAIKAKYEPALPQVEEFLGS 97 (143)
T ss_dssp -CHHHHHHHHHHH-C-HCT-SSHHHHHHHHHHHHHTT-GGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-C-CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7888999999999 3 34445789999999999999888888777777644
No 421
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=21.12 E-value=2.7e+02 Score=23.99 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=37.4
Q ss_pred HHHhhcchHHHHHH---HHHHHhhCCCcHHHHHHHHHHHhHhhh--hhHHH
Q 031176 96 GYYRTGEYAKSRQI---LEQCLEIAPDWRQALGLKKTVEDRIAK--DGVIG 141 (164)
Q Consensus 96 g~~kl~~Y~~A~~~---~~~lL~~eP~n~Qa~~L~~~Ie~~~~~--dGliG 141 (164)
.+.+.|.|++|+.. +.++-+.-|+++=.+.+...++..+.. ++++.
T Consensus 115 ~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml~~Li~ 165 (338)
T PF04124_consen 115 TCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQMLSQLIN 165 (338)
T ss_pred HHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999975 888999999999888888888776543 55554
No 422
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.08 E-value=1.7e+02 Score=19.50 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q 031176 139 VIGIGITATAVGL 151 (164)
Q Consensus 139 liG~~i~~~a~~~ 151 (164)
++||+++=.++.+
T Consensus 9 i~Gm~iVF~~L~l 21 (79)
T PF04277_consen 9 IIGMGIVFLVLIL 21 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 5788887444433
No 423
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=20.96 E-value=43 Score=27.98 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 031176 142 IGITATAVGLIAGGIAAALAR 162 (164)
Q Consensus 142 ~~i~~~a~~~~~g~~~~a~~r 162 (164)
+||+||++++|+=+++.+++|
T Consensus 41 iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 41 IAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeecchhhhHHHHHHHHHHH
Confidence 455555555544344566776
No 424
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=20.94 E-value=3.1e+02 Score=19.35 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 97 YYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 97 ~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
.|...+.++|++.|..+|+.-|+.++.=.+.-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG 47 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLG 47 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 45677889999999999999998776544433
No 425
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.92 E-value=1.2e+02 Score=27.51 Aligned_cols=29 Identities=24% Similarity=0.238 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
..||+|+-|.+..||+.||--.+++++..
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 46999999999999999998888888764
No 426
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=20.91 E-value=2.3e+02 Score=23.35 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
++.++-|+...+.++|+++.++++.+.+
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQ 57 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 7777888888888888888888766544
No 427
>PF04406 TP6A_N: Type IIB DNA topoisomerase; InterPro: IPR013049 This entry represents the N-terminal domain found in Spo11, a meiotic recombination protein found in eukaryotes, and in subunit A of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea [, ]. These two types of proteins share structural homology. Spo11 is a meiosis-specific protein that is responsible for the initiation of recombination through the formation of DNA double-strand breaks by a type II DNA topoisomerase-like activity. Spo11 acts in conjunction with several other proteins, including Rec102 in yeast, to bring about meiotic recombination []. DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. They can be divided into two classes: type I enzymes (5.99.1.2 from EC, topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC, topoisomerases II, IV and VI) break double-strand DNA []. Topoisomerase VI is a type IIB enzymes that assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003824 catalytic activity, 0005524 ATP binding, 0006259 DNA metabolic process, 0005694 chromosome; PDB: 1D3Y_B 2ZBK_A 2Q2E_A.
Probab=20.68 E-value=57 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 70 IAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 70 i~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
++...+++.. +.....||.+|.----+-.+.+-+++..-+..+|.+.++
T Consensus 15 l~~i~~~l~~-~~~~T~RdiYY~~~~lF~~Q~~vd~~i~di~~~l~~~R~ 63 (68)
T PF04406_consen 15 LAIIHELLQN-NKTSTKRDIYYRNVSLFKSQREVDRAIDDICCLLGVSRE 63 (68)
T ss_dssp HHHHHHHHHT-T--EEHHHHHHHCSCS-SSHHHHHHHHHHHHHHHTS-GG
T ss_pred HHHHHHHHHc-CCccchHHHHHhchhhccCHHHHHHHHHHHHHHHCCCHH
Confidence 3445566665 456788998888777777788888888888888888554
No 428
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=20.57 E-value=2.2e+02 Score=23.37 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=31.6
Q ss_pred hcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhh
Q 031176 100 TGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDG 138 (164)
Q Consensus 100 l~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dG 138 (164)
..++.+.++.+...+.+.|....+..+++..+--..|-.
T Consensus 124 ~~~~~~~~~~l~~~~~~~~t~~d~~~lr~I~~aV~~RAA 162 (243)
T PF03727_consen 124 SDDLSETREILQEFFGLPPTEEDRQILRRICEAVSTRAA 162 (243)
T ss_dssp TTCHHHHHHHHHHCTTSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHhH
Confidence 456888888888888999999999999998888777743
No 429
>PRK08124 flagellar motor protein MotA; Validated
Probab=20.51 E-value=5.2e+02 Score=21.73 Aligned_cols=19 Identities=0% Similarity=0.093 Sum_probs=13.0
Q ss_pred cCChhHHHHHHHHHHHHhh
Q 031176 60 SRQAEDVQRGIAMLEASLA 78 (164)
Q Consensus 60 S~~~~d~~~gi~lLe~ll~ 78 (164)
|...+++.++...+...+.
T Consensus 50 ~~~~~~~~~~~k~~~~~f~ 68 (263)
T PRK08124 50 AFPMSELKKVPKLFKVLFK 68 (263)
T ss_pred hCCHHHHHHHHHHHHHHhc
Confidence 5556677777777777664
No 430
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=20.22 E-value=4.4e+02 Score=21.17 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH--HHHHHHHHH--hHhhhhhHHHH
Q 031176 68 RGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ--ALGLKKTVE--DRIAKDGVIGI 142 (164)
Q Consensus 68 ~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q--a~~L~~~Ie--~~~~~dGliG~ 142 (164)
.++..|-+.+.+. ....+..+-+-|||-...++-...+.|+++- +|+.-- ...|.-.++ +.++|.|++|.
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l-----~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~ 126 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFL-----DPQRYDGPLQKLLPFTEHKSVIRRGGVAGT 126 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHh-----CchhhhhHHHHHHHHhccCcHHHHHHHHHH
Confidence 3444444444431 1123557888999999999999999999874 344333 555666655 56888888875
No 431
>PRK10987 regulatory protein AmpE; Provisional
Probab=20.18 E-value=4.8e+02 Score=22.05 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=27.4
Q ss_pred HhhcchHHHHHHHHHH---HhhCCCcHHHHHHHHHHHhHh---hhhhHHHHHH
Q 031176 98 YRTGEYAKSRQILEQC---LEIAPDWRQALGLKKTVEDRI---AKDGVIGIGI 144 (164)
Q Consensus 98 ~kl~~Y~~A~~~~~~l---L~~eP~n~Qa~~L~~~Ie~~~---~~dGliG~~i 144 (164)
.+.||-+.|+++..++ -..+++ ....++.+.+-+.+ .-|++++...
T Consensus 98 L~~gDl~aAR~~l~~l~~~~grd~~-l~~~~i~~~~~e~~~~~~~~~~~a~lF 149 (284)
T PRK10987 98 ACRGDSQACYHMAEELTLIHGLPAD-VSERELLRELQQALLWINYRYYLAPLF 149 (284)
T ss_pred HHCCCHHHHHHHHHHhhhccCCCCC-CCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3467999999988887 445554 33334433333333 3388877643
Done!