Query 031176
Match_columns 164
No_of_seqs 108 out of 240
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:23:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y8m_A FIS1; mitochondria, unk 100.0 1.2E-44 4.2E-49 279.1 11.8 128 18-147 3-137 (144)
2 1pc2_A Mitochondria fission pr 100.0 1.2E-42 3.9E-47 270.6 3.4 129 25-155 9-138 (152)
3 3o48_A Mitochondria fission 1 100.0 1.1E-39 3.8E-44 248.8 15.1 124 15-140 7-131 (134)
4 1nzn_A CGI-135 protein, fissio 100.0 2.8E-39 9.7E-44 244.6 13.0 114 25-139 12-126 (126)
5 4gco_A Protein STI-1; structur 99.0 4.6E-09 1.6E-13 75.6 11.6 88 33-126 32-120 (126)
6 3bee_A Putative YFRE protein; 99.0 2E-09 6.7E-14 75.6 9.4 88 43-133 2-89 (93)
7 1zu2_A Mitochondrial import re 99.0 8.1E-09 2.8E-13 80.1 12.3 106 25-133 10-137 (158)
8 3upv_A Heat shock protein STI1 98.9 1.4E-08 4.7E-13 71.0 10.9 98 31-134 21-125 (126)
9 2xcb_A PCRH, regulatory protei 98.9 8.6E-09 2.9E-13 74.4 9.9 96 34-135 38-134 (142)
10 3gyz_A Chaperone protein IPGC; 98.9 2.2E-08 7.6E-13 75.3 11.9 110 6-121 9-138 (151)
11 2xev_A YBGF; tetratricopeptide 98.9 4.2E-08 1.4E-12 67.9 12.3 82 47-133 39-122 (129)
12 2vgx_A Chaperone SYCD; alterna 98.9 1.6E-08 5.4E-13 74.6 10.6 95 35-135 42-137 (148)
13 3k9i_A BH0479 protein; putativ 98.8 1.3E-08 4.4E-13 71.2 8.2 94 34-133 10-107 (117)
14 1elw_A TPR1-domain of HOP; HOP 98.8 7.8E-08 2.7E-12 64.2 11.7 94 33-132 23-117 (118)
15 3sz7_A HSC70 cochaperone (SGT) 98.8 3.7E-08 1.3E-12 72.1 10.5 85 32-122 29-114 (164)
16 3rkv_A Putative peptidylprolyl 98.8 3.6E-08 1.2E-12 72.1 10.2 83 46-134 62-145 (162)
17 2dba_A Smooth muscle cell asso 98.8 7.2E-08 2.5E-12 67.5 11.3 80 47-132 65-144 (148)
18 4ga2_A E3 SUMO-protein ligase 98.8 3.8E-08 1.3E-12 72.3 9.7 80 45-130 63-143 (150)
19 2lni_A Stress-induced-phosphop 98.8 1.6E-07 5.4E-12 64.4 11.7 85 41-131 44-128 (133)
20 4ga2_A E3 SUMO-protein ligase 98.8 7.9E-08 2.7E-12 70.6 10.4 101 26-132 9-110 (150)
21 2v5f_A Prolyl 4-hydroxylase su 98.7 9.8E-08 3.3E-12 66.9 10.2 89 46-137 4-96 (104)
22 2vyi_A SGTA protein; chaperone 98.7 2.8E-07 9.7E-12 62.3 12.2 94 34-133 32-126 (131)
23 1na0_A Designed protein CTPR3; 98.7 4.4E-07 1.5E-11 60.9 12.2 91 34-130 29-120 (125)
24 3vtx_A MAMA; tetratricopeptide 98.7 7E-08 2.4E-12 71.1 8.7 75 42-122 102-176 (184)
25 3q49_B STIP1 homology and U bo 98.7 1.5E-07 5E-12 65.8 9.8 94 34-133 29-128 (137)
26 1na3_A Designed protein CTPR2; 98.7 1.8E-07 6E-12 60.9 9.6 78 46-129 8-85 (91)
27 2fbn_A 70 kDa peptidylprolyl i 98.7 3.3E-07 1.1E-11 69.0 12.3 82 48-135 89-170 (198)
28 2l6j_A TPR repeat-containing p 98.7 2.4E-07 8.4E-12 62.2 10.3 69 46-120 3-71 (111)
29 3ma5_A Tetratricopeptide repea 98.7 3.7E-08 1.3E-12 67.7 6.0 76 43-124 3-78 (100)
30 2e2e_A Formate-dependent nitri 98.7 2.6E-07 8.8E-12 67.9 10.8 97 34-136 64-164 (177)
31 1hxi_A PEX5, peroxisome target 98.7 1.3E-07 4.3E-12 67.4 8.7 71 44-120 48-118 (121)
32 3gyz_A Chaperone protein IPGC; 98.6 9.6E-08 3.3E-12 71.8 8.4 81 44-130 33-113 (151)
33 2kat_A Uncharacterized protein 98.6 1.3E-07 4.4E-12 65.3 8.4 83 36-124 7-90 (115)
34 1elr_A TPR2A-domain of HOP; HO 98.6 4.8E-07 1.6E-11 61.4 11.0 97 32-134 22-125 (131)
35 2xcb_A PCRH, regulatory protei 98.6 1.8E-07 6.3E-12 67.3 8.7 82 43-130 14-95 (142)
36 1a17_A Serine/threonine protei 98.6 9.9E-07 3.4E-11 62.7 12.3 92 33-130 32-124 (166)
37 2kc7_A BFR218_protein; tetratr 98.6 3.6E-07 1.2E-11 61.1 9.3 69 50-124 3-72 (99)
38 3upv_A Heat shock protein STI1 98.6 3.4E-07 1.2E-11 63.8 9.5 81 46-132 3-83 (126)
39 2vgx_A Chaperone SYCD; alterna 98.6 2.5E-07 8.4E-12 68.1 9.0 86 37-128 10-96 (148)
40 1ihg_A Cyclophilin 40; ppiase 98.6 4.2E-07 1.4E-11 77.1 11.1 85 45-135 271-355 (370)
41 4gco_A Protein STI-1; structur 98.6 3.5E-07 1.2E-11 65.6 9.0 82 45-132 11-92 (126)
42 3sz7_A HSC70 cochaperone (SGT) 98.6 4.8E-07 1.7E-11 66.1 9.6 84 44-133 8-91 (164)
43 3urz_A Uncharacterized protein 98.5 5.4E-07 1.8E-11 69.1 10.2 90 33-128 23-129 (208)
44 3q49_B STIP1 homology and U bo 98.5 6.9E-07 2.4E-11 62.2 9.9 84 44-133 6-89 (137)
45 1p5q_A FKBP52, FK506-binding p 98.5 9.4E-07 3.2E-11 73.3 12.2 83 47-135 196-278 (336)
46 1hxi_A PEX5, peroxisome target 98.5 6.7E-07 2.3E-11 63.6 9.6 76 48-129 18-93 (121)
47 3qky_A Outer membrane assembly 98.5 1.4E-06 4.8E-11 67.9 12.3 77 51-130 152-238 (261)
48 2pl2_A Hypothetical conserved 98.5 1.4E-06 4.8E-11 67.2 12.0 94 31-130 22-127 (217)
49 2xev_A YBGF; tetratricopeptide 98.5 8.1E-07 2.8E-11 61.3 9.5 72 47-121 2-73 (129)
50 4i17_A Hypothetical protein; T 98.5 1.3E-06 4.6E-11 66.4 11.3 81 48-134 118-227 (228)
51 2pl2_A Hypothetical conserved 98.5 1.5E-06 5E-11 67.0 11.7 93 29-128 99-192 (217)
52 2dba_A Smooth muscle cell asso 98.5 1.7E-06 5.8E-11 60.3 11.0 83 43-130 24-108 (148)
53 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 7E-07 2.4E-11 77.3 10.5 83 47-135 317-399 (457)
54 2kck_A TPR repeat; tetratricop 98.5 1.2E-06 4.2E-11 57.9 9.5 73 43-120 36-110 (112)
55 2kck_A TPR repeat; tetratricop 98.5 8.7E-07 3E-11 58.6 8.7 85 44-134 3-89 (112)
56 2lni_A Stress-induced-phosphop 98.5 1.2E-06 4.2E-11 59.8 9.5 82 44-131 13-94 (133)
57 1elw_A TPR1-domain of HOP; HOP 98.5 1.6E-06 5.5E-11 57.7 9.8 80 46-131 3-82 (118)
58 3u4t_A TPR repeat-containing p 98.5 3.7E-07 1.3E-11 70.2 7.5 101 34-134 162-268 (272)
59 4i17_A Hypothetical protein; T 98.4 4.5E-06 1.5E-10 63.4 12.3 85 33-123 26-112 (228)
60 3qky_A Outer membrane assembly 98.4 3.4E-06 1.2E-10 65.7 11.8 78 47-127 52-137 (261)
61 3ieg_A DNAJ homolog subfamily 98.4 4.1E-06 1.4E-10 65.9 12.2 83 48-136 273-355 (359)
62 2fo7_A Synthetic consensus TPR 98.4 3.8E-06 1.3E-10 56.4 10.3 92 32-129 19-111 (136)
63 4abn_A Tetratricopeptide repea 98.4 4.7E-06 1.6E-10 72.1 13.4 104 28-133 193-304 (474)
64 3uq3_A Heat shock protein STI1 98.4 2.4E-06 8.1E-11 64.5 10.1 91 34-130 125-216 (258)
65 2q7f_A YRRB protein; TPR, prot 98.4 1.8E-06 6.2E-11 64.9 9.0 75 45-125 123-197 (243)
66 3urz_A Uncharacterized protein 98.4 2.5E-06 8.7E-11 65.3 9.8 80 45-130 2-97 (208)
67 2fo7_A Synthetic consensus TPR 98.3 1E-05 3.6E-10 54.2 11.6 72 43-120 65-136 (136)
68 4gcn_A Protein STI-1; structur 98.3 4.1E-06 1.4E-10 59.7 10.0 94 31-127 25-123 (127)
69 1hh8_A P67PHOX, NCF-2, neutrop 98.3 5.4E-06 1.8E-10 61.9 11.0 79 41-122 65-156 (213)
70 3as5_A MAMA; tetratricopeptide 98.3 1.3E-06 4.5E-11 62.3 7.2 97 30-132 58-155 (186)
71 1wao_1 Serine/threonine protei 98.3 4.7E-06 1.6E-10 72.8 12.1 96 29-130 21-117 (477)
72 2yhc_A BAMD, UPF0169 lipoprote 98.3 3.1E-06 1.1E-10 65.2 9.8 74 46-122 3-76 (225)
73 2if4_A ATFKBP42; FKBP-like, al 98.3 8.1E-07 2.8E-11 73.9 6.8 80 48-133 231-310 (338)
74 3vtx_A MAMA; tetratricopeptide 98.3 5E-06 1.7E-10 61.0 10.3 79 46-130 4-82 (184)
75 3uq3_A Heat shock protein STI1 98.3 8.8E-06 3E-10 61.3 11.5 89 35-129 160-255 (258)
76 2vq2_A PILW, putative fimbrial 98.3 1E-05 3.6E-10 59.6 11.3 88 33-124 61-150 (225)
77 2vyi_A SGTA protein; chaperone 98.3 4.5E-06 1.5E-10 56.3 8.5 79 46-130 11-89 (131)
78 3as5_A MAMA; tetratricopeptide 98.3 1.8E-05 6.3E-10 56.2 12.1 94 31-130 25-119 (186)
79 2vq2_A PILW, putative fimbrial 98.3 2.8E-05 9.6E-10 57.2 13.5 82 45-132 111-193 (225)
80 3mkr_A Coatomer subunit epsilo 98.3 8.5E-06 2.9E-10 66.2 11.5 59 63-124 179-237 (291)
81 1xnf_A Lipoprotein NLPI; TPR, 98.3 1.3E-05 4.3E-10 61.3 11.9 76 42-123 72-147 (275)
82 2yhc_A BAMD, UPF0169 lipoprote 98.3 2.1E-05 7E-10 60.6 13.1 81 46-129 40-138 (225)
83 3u4t_A TPR repeat-containing p 98.3 1.4E-05 4.8E-10 61.3 12.1 77 45-124 35-111 (272)
84 1na0_A Designed protein CTPR3; 98.3 9.7E-06 3.3E-10 54.1 9.8 76 46-127 8-83 (125)
85 4eqf_A PEX5-related protein; a 98.2 2.2E-05 7.5E-10 63.3 12.6 98 27-130 190-290 (365)
86 4gcn_A Protein STI-1; structur 98.2 2.1E-06 7E-11 61.3 5.7 71 46-122 7-77 (127)
87 2ho1_A Type 4 fimbrial biogene 98.2 3E-05 1E-09 58.9 12.6 89 35-127 92-181 (252)
88 2ho1_A Type 4 fimbrial biogene 98.2 1.7E-05 5.9E-10 60.2 11.2 97 30-132 121-220 (252)
89 2e2e_A Formate-dependent nitri 98.2 7.5E-06 2.6E-10 59.9 8.8 99 27-131 23-125 (177)
90 4gyw_A UDP-N-acetylglucosamine 98.2 1.2E-05 4.2E-10 74.5 12.0 86 34-125 63-149 (723)
91 2q7f_A YRRB protein; TPR, prot 98.2 2.5E-05 8.6E-10 58.5 11.8 94 31-130 74-168 (243)
92 1a17_A Serine/threonine protei 98.2 1.5E-05 5.2E-10 56.4 9.9 79 46-130 12-90 (166)
93 2vsy_A XCC0866; transferase, g 98.2 1.9E-05 6.5E-10 68.8 12.5 95 33-133 42-137 (568)
94 4gyw_A UDP-N-acetylglucosamine 98.2 1.3E-05 4.5E-10 74.2 12.1 95 30-130 25-120 (723)
95 1w3b_A UDP-N-acetylglucosamine 98.2 2.4E-05 8.4E-10 63.7 12.4 89 31-125 254-343 (388)
96 2vsy_A XCC0866; transferase, g 98.2 1.1E-05 3.9E-10 70.3 10.7 96 29-130 4-100 (568)
97 2c2l_A CHIP, carboxy terminus 98.2 1.8E-05 6.2E-10 63.6 11.2 85 31-121 21-106 (281)
98 3rkv_A Putative peptidylprolyl 98.2 1E-05 3.5E-10 58.8 8.8 84 46-132 10-108 (162)
99 1xnf_A Lipoprotein NLPI; TPR, 98.2 1.8E-05 6E-10 60.5 10.4 99 25-129 16-119 (275)
100 2y4t_A DNAJ homolog subfamily 98.2 3.5E-05 1.2E-09 63.4 12.9 82 47-134 295-376 (450)
101 3cv0_A Peroxisome targeting si 98.2 4.7E-05 1.6E-09 59.3 12.9 99 25-129 149-248 (327)
102 3mkr_A Coatomer subunit epsilo 98.1 2.3E-05 7.8E-10 63.6 11.4 93 32-130 184-278 (291)
103 3ieg_A DNAJ homolog subfamily 98.1 2.4E-05 8.2E-10 61.4 10.9 91 31-127 20-114 (359)
104 3k9i_A BH0479 protein; putativ 98.1 5.6E-06 1.9E-10 57.4 6.1 69 63-131 3-71 (117)
105 1fch_A Peroxisomal targeting s 98.1 4.7E-05 1.6E-09 60.7 12.3 95 30-130 197-294 (368)
106 2fbn_A 70 kDa peptidylprolyl i 98.1 3.3E-05 1.1E-09 57.9 10.7 80 46-130 37-131 (198)
107 1elr_A TPR2A-domain of HOP; HO 98.1 1.1E-05 3.8E-10 54.4 7.3 69 46-120 3-71 (131)
108 2h6f_A Protein farnesyltransfe 98.1 8.2E-06 2.8E-10 69.8 8.1 79 43-127 127-206 (382)
109 2hr2_A Hypothetical protein; a 98.1 1.3E-05 4.6E-10 61.9 8.6 84 49-136 59-155 (159)
110 3cv0_A Peroxisome targeting si 98.1 3.5E-05 1.2E-09 60.0 11.0 79 35-119 193-272 (327)
111 3hym_B Cell division cycle pro 98.1 5.1E-05 1.7E-09 59.1 11.9 76 43-124 121-196 (330)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.1 2.7E-05 9.1E-10 58.0 9.9 71 45-121 35-105 (213)
113 2h6f_A Protein farnesyltransfe 98.1 2.4E-05 8.3E-10 66.8 10.7 87 41-133 160-246 (382)
114 2c2l_A CHIP, carboxy terminus 98.0 2.4E-05 8.2E-10 62.9 9.6 79 46-130 3-81 (281)
115 2y4t_A DNAJ homolog subfamily 98.0 0.0001 3.4E-09 60.6 13.2 81 35-121 47-128 (450)
116 1p5q_A FKBP52, FK506-binding p 98.0 3.3E-05 1.1E-09 63.9 10.2 80 46-130 146-239 (336)
117 1w3b_A UDP-N-acetylglucosamine 98.0 5.1E-05 1.7E-09 61.8 11.2 90 32-127 221-311 (388)
118 2gw1_A Mitochondrial precursor 98.0 5.4E-05 1.8E-09 62.8 11.5 83 47-132 412-494 (514)
119 1fch_A Peroxisomal targeting s 98.0 4.9E-05 1.7E-09 60.6 10.7 80 35-120 238-318 (368)
120 3hym_B Cell division cycle pro 98.0 5.2E-05 1.8E-09 59.1 10.4 74 46-124 89-162 (330)
121 4eqf_A PEX5-related protein; a 98.0 3.4E-05 1.2E-09 62.1 9.4 76 46-127 64-139 (365)
122 2pzi_A Probable serine/threoni 98.0 4.6E-05 1.6E-09 69.1 11.1 81 43-129 429-509 (681)
123 2xpi_A Anaphase-promoting comp 98.0 8.3E-05 2.8E-09 63.5 11.7 77 47-129 516-592 (597)
124 4abn_A Tetratricopeptide repea 97.9 8.2E-05 2.8E-09 64.3 11.4 73 41-119 96-169 (474)
125 3qou_A Protein YBBN; thioredox 97.9 0.00029 1E-08 56.6 13.5 91 34-127 137-261 (287)
126 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.7E-05 1.6E-09 65.8 9.3 80 46-130 267-360 (457)
127 2xpi_A Anaphase-promoting comp 97.9 0.00019 6.6E-09 61.3 12.6 94 34-130 461-559 (597)
128 1ihg_A Cyclophilin 40; ppiase 97.9 5.9E-05 2E-09 63.8 9.2 83 47-132 223-318 (370)
129 2r5s_A Uncharacterized protein 97.9 8.1E-06 2.8E-10 60.4 3.3 75 47-128 6-80 (176)
130 2hr2_A Hypothetical protein; a 97.8 5.1E-05 1.7E-09 58.6 7.4 73 47-124 11-101 (159)
131 2kat_A Uncharacterized protein 97.8 0.00014 4.6E-09 49.7 8.8 60 68-130 3-62 (115)
132 3fp2_A TPR repeat-containing p 97.8 0.00018 6.3E-09 60.3 11.2 76 45-126 308-383 (537)
133 3fp2_A TPR repeat-containing p 97.8 5.2E-05 1.8E-09 63.6 7.6 79 46-130 24-102 (537)
134 2if4_A ATFKBP42; FKBP-like, al 97.8 7.3E-05 2.5E-09 61.9 8.0 79 47-130 179-273 (338)
135 2r5s_A Uncharacterized protein 97.7 0.00033 1.1E-08 51.6 10.1 51 69-122 93-143 (176)
136 3edt_B KLC 2, kinesin light ch 97.7 0.00024 8.2E-09 53.7 9.1 85 29-116 23-114 (283)
137 2gw1_A Mitochondrial precursor 97.7 0.00021 7.3E-09 59.2 9.4 84 32-122 24-108 (514)
138 2pzi_A Probable serine/threoni 97.7 0.00012 3.9E-09 66.5 8.2 89 34-129 453-542 (681)
139 4g1t_A Interferon-induced prot 97.6 0.00053 1.8E-08 56.9 11.2 89 41-132 328-417 (472)
140 3ma5_A Tetratricopeptide repea 97.5 0.00021 7.1E-09 48.5 6.5 49 85-133 5-53 (100)
141 3edt_B KLC 2, kinesin light ch 97.5 0.0007 2.4E-08 51.1 9.6 68 46-116 84-156 (283)
142 3qou_A Protein YBBN; thioredox 97.5 0.00021 7.1E-09 57.4 6.8 72 44-121 114-185 (287)
143 2ond_A Cleavage stimulation fa 97.5 0.00089 3E-08 53.7 10.5 90 31-122 33-134 (308)
144 1wao_1 Serine/threonine protei 97.5 5.5E-05 1.9E-09 66.0 3.5 76 49-130 8-83 (477)
145 1qqe_A Vesicular transport pro 97.5 0.00031 1.1E-08 56.2 7.7 74 47-123 158-235 (292)
146 1na3_A Designed protein CTPR2; 97.4 0.00058 2E-08 43.7 7.1 48 83-130 5-52 (91)
147 4f3v_A ESX-1 secretion system 97.4 0.0012 4.2E-08 55.0 10.3 74 48-125 172-245 (282)
148 3rjv_A Putative SEL1 repeat pr 97.4 0.0019 6.6E-08 49.3 10.6 94 31-127 70-168 (212)
149 4g1t_A Interferon-induced prot 97.3 0.0019 6.3E-08 53.6 10.9 79 44-125 206-285 (472)
150 3nf1_A KLC 1, kinesin light ch 97.3 0.0016 5.6E-08 50.0 9.6 68 46-116 110-182 (311)
151 2ond_A Cleavage stimulation fa 97.3 0.002 6.9E-08 51.5 10.3 86 32-122 82-169 (308)
152 3q15_A PSP28, response regulat 97.3 0.002 7E-08 52.7 10.3 68 46-119 221-293 (378)
153 1ouv_A Conserved hypothetical 97.2 0.00052 1.8E-08 53.2 6.2 68 46-118 145-217 (273)
154 2qfc_A PLCR protein; TPR, HTH, 97.2 0.0016 5.6E-08 51.6 9.2 70 47-119 155-228 (293)
155 3nf1_A KLC 1, kinesin light ch 97.2 0.002 7E-08 49.4 9.4 70 45-117 25-99 (311)
156 3ro3_A PINS homolog, G-protein 97.2 0.0024 8.3E-08 43.7 8.5 70 47-119 89-161 (164)
157 3gw4_A Uncharacterized protein 97.1 0.0037 1.3E-07 45.4 9.5 73 45-120 24-102 (203)
158 3qww_A SET and MYND domain-con 97.1 0.0018 6.1E-08 56.6 9.1 84 46-132 339-432 (433)
159 2l6j_A TPR repeat-containing p 97.1 0.0017 5.9E-08 42.8 6.7 42 87-128 4-45 (111)
160 2ifu_A Gamma-SNAP; membrane fu 97.1 0.0022 7.5E-08 51.5 8.4 80 47-130 155-240 (307)
161 3u3w_A Transcriptional activat 97.0 0.0015 5.2E-08 51.8 7.2 69 49-120 157-229 (293)
162 3rjv_A Putative SEL1 repeat pr 97.0 0.016 5.5E-07 44.1 12.5 97 29-131 104-210 (212)
163 3ulq_A Response regulator aspa 97.0 0.0036 1.2E-07 51.1 9.0 70 47-119 224-296 (383)
164 2xm6_A Protein corresponding t 97.0 0.0027 9.1E-08 54.1 8.5 91 29-125 346-444 (490)
165 2qfc_A PLCR protein; TPR, HTH, 96.9 0.0017 6E-08 51.4 6.7 84 48-135 197-284 (293)
166 1ouv_A Conserved hypothetical 96.9 0.0058 2E-07 47.2 9.5 81 44-131 35-120 (273)
167 3u3w_A Transcriptional activat 96.9 0.0022 7.6E-08 50.8 7.3 68 47-117 196-267 (293)
168 3ro3_A PINS homolog, G-protein 96.9 0.0076 2.6E-07 41.1 9.0 70 47-119 49-121 (164)
169 3gw4_A Uncharacterized protein 96.9 0.0029 9.8E-08 46.0 7.1 70 46-118 65-138 (203)
170 1klx_A Cysteine rich protein B 96.8 0.0037 1.3E-07 45.1 7.2 68 45-117 55-127 (138)
171 1qqe_A Vesicular transport pro 96.8 0.0027 9.3E-08 50.6 7.0 73 47-122 117-193 (292)
172 3n71_A Histone lysine methyltr 96.8 0.0094 3.2E-07 52.8 10.9 86 46-134 350-445 (490)
173 3ro2_A PINS homolog, G-protein 96.8 0.0031 1.1E-07 48.3 6.6 70 47-119 263-335 (338)
174 3ro2_A PINS homolog, G-protein 96.7 0.0034 1.2E-07 48.1 6.7 71 48-121 44-117 (338)
175 3sf4_A G-protein-signaling mod 96.7 0.0056 1.9E-07 48.8 8.1 70 48-120 48-120 (406)
176 4a1s_A PINS, partner of inscut 96.7 0.0032 1.1E-07 51.0 6.7 65 49-116 88-155 (411)
177 4a1s_A PINS, partner of inscut 96.7 0.0096 3.3E-07 48.1 9.4 68 44-116 45-115 (411)
178 3qwp_A SET and MYND domain-con 96.7 0.012 4E-07 51.1 10.2 85 46-133 328-422 (429)
179 3q15_A PSP28, response regulat 96.6 0.0061 2.1E-07 49.8 7.9 75 46-123 181-263 (378)
180 2ifu_A Gamma-SNAP; membrane fu 96.6 0.0042 1.4E-07 49.9 6.9 71 47-121 116-189 (307)
181 4f3v_A ESX-1 secretion system 96.6 0.0053 1.8E-07 51.1 7.6 94 20-117 94-201 (282)
182 1klx_A Cysteine rich protein B 96.5 0.042 1.4E-06 39.3 10.9 88 27-128 8-100 (138)
183 3sf4_A G-protein-signaling mod 96.5 0.0081 2.8E-07 47.9 7.7 70 44-116 6-76 (406)
184 1zu2_A Mitochondrial import re 96.5 0.0052 1.8E-07 47.2 6.3 60 63-125 15-84 (158)
185 3ulq_A Response regulator aspa 96.5 0.0042 1.4E-07 50.6 6.0 65 53-120 109-176 (383)
186 2kc7_A BFR218_protein; tetratr 96.5 0.003 1E-07 41.4 4.3 77 31-121 17-95 (99)
187 2ooe_A Cleavage stimulation fa 96.5 0.025 8.5E-07 48.5 11.0 86 32-123 339-427 (530)
188 3e4b_A ALGK; tetratricopeptide 96.3 0.014 4.7E-07 49.9 8.2 85 32-127 235-324 (452)
189 4b4t_Q 26S proteasome regulato 96.2 0.016 5.4E-07 47.3 8.1 75 46-123 3-91 (434)
190 2xm6_A Protein corresponding t 96.2 0.032 1.1E-06 47.3 10.2 67 46-117 327-397 (490)
191 2ooe_A Cleavage stimulation fa 96.2 0.015 5E-07 50.0 8.1 84 36-121 260-355 (530)
192 3e4b_A ALGK; tetratricopeptide 96.0 0.058 2E-06 46.0 10.8 78 47-130 176-257 (452)
193 1hz4_A MALT regulatory protein 95.9 0.034 1.2E-06 44.6 8.4 70 48-120 94-168 (373)
194 3ly7_A Transcriptional activat 95.6 0.11 3.7E-06 45.0 11.0 91 28-125 255-348 (372)
195 3bee_A Putative YFRE protein; 95.6 0.044 1.5E-06 37.5 6.8 47 86-132 5-54 (93)
196 1dce_A Protein (RAB geranylger 95.5 0.053 1.8E-06 48.5 8.9 90 41-134 101-191 (567)
197 3mv2_B Coatomer subunit epsilo 95.4 0.2 7E-06 42.0 11.6 31 88-118 101-131 (310)
198 4b4t_Q 26S proteasome regulato 95.4 0.046 1.6E-06 44.5 7.4 70 46-118 134-206 (434)
199 3mv2_B Coatomer subunit epsilo 95.0 0.081 2.8E-06 44.5 7.9 71 47-124 174-258 (310)
200 3u64_A Protein TP_0956; tetrat 94.7 0.18 6E-06 42.6 9.2 92 26-119 175-272 (301)
201 3dra_A Protein farnesyltransfe 94.7 0.16 5.5E-06 42.1 8.9 79 48-131 33-113 (306)
202 3dra_A Protein farnesyltransfe 94.5 0.3 1E-05 40.4 10.1 85 43-130 99-189 (306)
203 1dce_A Protein (RAB geranylger 94.4 0.39 1.3E-05 42.8 11.4 88 43-133 59-155 (567)
204 1hz4_A MALT regulatory protein 94.4 0.085 2.9E-06 42.3 6.4 68 48-120 15-86 (373)
205 3dss_A Geranylgeranyl transfer 94.0 0.57 2E-05 39.4 11.0 89 41-133 102-191 (331)
206 3u64_A Protein TP_0956; tetrat 94.0 0.25 8.5E-06 41.7 8.6 56 63-120 176-237 (301)
207 3q7a_A Farnesyltransferase alp 93.7 0.58 2E-05 39.8 10.7 60 68-130 72-132 (349)
208 3dss_A Geranylgeranyl transfer 93.6 0.88 3E-05 38.3 11.5 90 28-125 128-231 (331)
209 3qww_A SET and MYND domain-con 93.6 0.086 2.9E-06 45.9 5.3 68 63-130 311-388 (433)
210 3n71_A Histone lysine methyltr 93.5 0.19 6.5E-06 44.3 7.4 69 62-130 321-399 (490)
211 3q7a_A Farnesyltransferase alp 92.5 2.2 7.5E-05 36.2 12.5 85 46-135 87-173 (349)
212 3qwp_A SET and MYND domain-con 91.6 0.29 1E-05 42.2 6.0 69 62-130 299-377 (429)
213 1xi4_A Clathrin heavy chain; a 91.3 1.4 4.9E-05 44.5 11.1 65 45-120 1103-1167(1630)
214 2ff4_A Probable regulatory pro 91.2 1.8 6.2E-05 36.6 10.5 75 51-132 175-256 (388)
215 2w2u_A Hypothetical P60 katani 90.1 0.66 2.3E-05 31.7 5.5 66 60-136 10-75 (83)
216 3ffl_A Anaphase-promoting comp 89.7 1.3 4.3E-05 34.3 7.5 68 49-116 22-92 (167)
217 3ly7_A Transcriptional activat 88.9 4.2 0.00014 35.0 10.9 29 92-120 282-310 (372)
218 4gns_B Protein CSD3, chitin bi 88.7 0.46 1.6E-05 44.5 5.1 49 62-113 349-397 (754)
219 3kae_A CDC27, possible protein 88.3 0.93 3.2E-05 36.3 5.9 59 48-117 34-94 (242)
220 1zbp_A Hypothetical protein VP 87.2 4.5 0.00015 33.5 9.7 75 62-139 9-84 (273)
221 1wfd_A Hypothetical protein 15 87.1 2.3 7.9E-05 29.4 6.8 66 60-136 6-71 (93)
222 1pc2_A Mitochondria fission pr 86.2 1.7 5.7E-05 32.9 6.0 55 62-119 10-68 (152)
223 3mv2_A Coatomer subunit alpha; 84.6 17 0.0006 30.7 12.6 35 96-130 216-250 (325)
224 2lbg_A Major prion protein; co 83.0 2.1 7.2E-05 23.4 3.8 6 157-162 22-27 (27)
225 3t5x_A PCI domain-containing p 82.9 1.6 5.6E-05 34.0 4.8 37 84-120 11-47 (203)
226 3mkr_B Coatomer subunit alpha; 82.4 18 0.0006 30.6 11.3 34 96-129 207-240 (320)
227 2cfu_A SDSA1; SDS-hydrolase, l 81.8 3.3 0.00011 37.8 7.1 49 87-135 449-497 (658)
228 2v6y_A AAA family ATPase, P60 81.6 3.3 0.00011 27.9 5.4 60 66-136 8-67 (83)
229 3ffl_A Anaphase-promoting comp 80.9 3.1 0.00011 32.1 5.7 63 47-112 63-147 (167)
230 2v5f_A Prolyl 4-hydroxylase su 80.4 1.3 4.3E-05 29.9 3.0 31 86-117 5-35 (104)
231 4e6h_A MRNA 3'-END-processing 79.3 14 0.00046 33.8 10.3 85 30-119 450-536 (679)
232 3kae_A CDC27, possible protein 78.5 19 0.00063 28.8 9.5 88 35-125 47-152 (242)
233 2llm_A Amyloid beta A4 protein 79.6 0.44 1.5E-05 29.1 0.0 29 135-164 15-43 (43)
234 4e6h_A MRNA 3'-END-processing 77.5 15 0.0005 33.6 10.0 72 51-125 508-579 (679)
235 4b4t_S RPN3, 26S proteasome re 75.5 2 6.9E-05 38.7 3.6 37 85-121 268-304 (523)
236 4a5x_A MITD1, MIT domain-conta 74.7 8.3 0.00028 26.2 5.8 34 103-136 39-72 (86)
237 1xi4_A Clathrin heavy chain; a 73.6 18 0.00063 36.7 10.1 37 88-124 1281-1317(1630)
238 4g26_A Pentatricopeptide repea 70.0 54 0.0018 28.3 11.9 96 28-128 84-183 (501)
239 2ff4_A Probable regulatory pro 69.9 32 0.0011 28.7 9.6 38 86-123 170-207 (388)
240 2v6x_A Vacuolar protein sortin 63.2 12 0.00043 24.8 4.7 38 103-140 36-74 (85)
241 3t5v_B Nuclear mRNA export pro 61.9 10 0.00036 33.2 5.2 36 85-120 218-254 (455)
242 4b4t_R RPN7, 26S proteasome re 60.9 5.3 0.00018 34.1 3.1 67 46-115 130-196 (429)
243 1b89_A Protein (clathrin heavy 59.5 13 0.00044 32.7 5.3 26 48-76 149-174 (449)
244 2rpa_A Katanin P60 ATPase-cont 59.5 8.2 0.00028 26.1 3.2 41 93-133 18-68 (78)
245 4ady_A RPN2, 26S proteasome re 59.5 25 0.00084 34.0 7.6 67 65-132 49-119 (963)
246 1ixm_A SPO0B, protein (sporula 59.0 19 0.00066 27.6 5.7 42 69-115 17-60 (192)
247 2cpt_A SKD1 protein, vacuolar 56.7 19 0.00063 25.8 4.9 62 64-136 13-75 (117)
248 4g26_A Pentatricopeptide repea 55.9 99 0.0034 26.6 13.8 94 34-132 125-222 (501)
249 3mkq_B Coatomer subunit alpha; 55.2 32 0.0011 26.4 6.4 55 45-113 6-60 (177)
250 2yhe_A SEC-alkyl sulfatase; hy 59.2 2.7 9.2E-05 38.7 0.0 48 87-134 461-508 (668)
251 4b4t_R RPN7, 26S proteasome re 53.8 49 0.0017 28.0 7.9 72 48-119 169-240 (429)
252 2jvf_A De novo protein M7; tet 53.4 19 0.00064 24.4 4.1 39 101-139 29-78 (96)
253 4f52_E Glomulin; cullin-ring E 53.0 61 0.0021 29.3 8.8 93 52-145 320-424 (596)
254 2uy1_A Cleavage stimulation fa 44.5 54 0.0019 28.1 6.8 52 66-121 195-246 (493)
255 4h7y_A Dual specificity protei 43.7 1.1E+02 0.0036 23.4 9.2 94 22-123 28-130 (161)
256 2e2a_A Protein (enzyme IIA); h 43.0 26 0.00089 24.8 3.8 29 87-115 20-48 (105)
257 1wcr_A PTS system, N, N'-diace 42.0 28 0.00095 24.5 3.8 29 87-115 18-46 (103)
258 2uy1_A Cleavage stimulation fa 41.9 94 0.0032 26.6 8.0 68 48-122 287-355 (493)
259 1pfi_A Major coat protein of P 40.9 38 0.0013 20.4 3.7 12 152-163 34-45 (46)
260 2l2t_A Receptor tyrosine-prote 38.2 52 0.0018 19.7 4.1 12 138-149 10-21 (44)
261 3k1s_A PTS system, cellobiose- 37.3 36 0.0012 24.2 3.8 28 87-114 22-49 (109)
262 2jwa_A Receptor tyrosine-prote 36.4 41 0.0014 20.3 3.4 7 140-146 14-20 (44)
263 2lp1_A C99; alzheimer'S D memb 41.0 8.2 0.00028 28.2 0.0 28 135-163 28-55 (122)
264 3l8r_A PTCA, putative PTS syst 34.6 41 0.0014 24.4 3.8 28 87-114 37-64 (120)
265 2k1k_A Ephrin type-A receptor 34.4 67 0.0023 18.5 4.0 6 159-164 33-38 (38)
266 2w2u_A Hypothetical P60 katani 33.8 37 0.0013 22.7 3.3 26 91-116 23-48 (83)
267 4gns_B Protein CSD3, chitin bi 32.7 2.4E+02 0.0083 26.2 9.6 69 54-122 289-372 (754)
268 3snx_A SUSD homolog, putative 32.1 42 0.0014 28.8 4.1 61 52-116 157-220 (460)
269 2kxe_A DNA polymerase II small 32.0 38 0.0013 22.4 2.9 32 72-106 7-38 (75)
270 1iij_A ERBB-2 receptor protein 31.0 20 0.0007 20.6 1.3 7 140-146 10-16 (35)
271 3mkr_B Coatomer subunit alpha; 29.4 1.1E+02 0.0037 25.7 6.0 51 92-144 107-162 (320)
272 1zl8_A LIN-7; heterodimer, alp 29.4 1.1E+02 0.0036 19.1 4.9 17 63-79 6-22 (53)
273 3bu8_A Telomeric repeat-bindin 28.7 2.3E+02 0.0078 22.8 9.7 47 87-133 113-161 (235)
274 3myv_A SUSD superfamily protei 28.5 68 0.0023 27.2 4.8 33 84-116 187-219 (454)
275 3lew_A SUSD-like carbohydrate 28.0 64 0.0022 27.8 4.6 34 84-117 200-233 (495)
276 2ynq_A ESSB; membrane protein, 27.6 1.3E+02 0.0044 22.9 5.7 61 44-112 38-98 (161)
277 4b4t_P 26S proteasome regulato 27.0 2.9E+02 0.0098 23.4 8.7 65 47-114 137-204 (445)
278 1j2j_B ADP-ribosylation factor 25.3 73 0.0025 19.3 3.1 27 53-79 12-38 (45)
279 2ks1_B Epidermal growth factor 24.8 46 0.0016 19.9 2.2 11 138-148 11-21 (44)
280 3ub0_A Non-structural protein 24.7 78 0.0027 24.9 4.0 29 102-130 18-46 (199)
281 3kez_A Putative sugar binding 24.0 94 0.0032 26.4 4.9 52 63-116 174-225 (461)
282 3vk9_A Glutathione S-transfera 23.0 2.2E+02 0.0076 20.7 13.1 59 65-123 131-198 (216)
283 1ya0_A SMG-7 transcript varian 22.6 1E+02 0.0035 27.0 4.9 37 89-125 154-190 (497)
284 3rru_A TOM1L1 protein; structu 22.1 2.4E+02 0.0081 20.7 7.2 60 18-79 25-84 (152)
285 2lpy_A Matrix protein P10; GAG 21.6 1.2E+02 0.004 22.1 4.2 54 25-79 50-111 (124)
286 2oar_A Large-conductance mecha 21.5 1.2E+02 0.004 23.4 4.4 40 117-157 15-54 (174)
287 3mcx_A SUSD superfamily protei 21.1 77 0.0026 27.0 3.7 33 84-116 199-231 (477)
288 2ifo_A Inovirus; helical virus 21.0 1.5E+02 0.0051 17.9 5.2 20 144-163 25-44 (46)
289 3mv2_A Coatomer subunit alpha; 20.8 1.6E+02 0.0055 24.7 5.5 50 93-144 120-174 (325)
290 4f4s_A ATP synthase subunit 9, 20.1 1.1E+02 0.0037 20.5 3.5 14 150-163 27-40 (76)
No 1
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-44 Score=279.13 Aligned_cols=128 Identities=23% Similarity=0.394 Sum_probs=119.5
Q ss_pred CCCCCCC-------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHH
Q 031176 18 GGDQIPW-------CDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKL 90 (164)
Q Consensus 18 ~~~~lp~-------~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~l 90 (164)
+.|.+|+ .+|++|+.+|++|+++..+.++++++|+|||+||||+++.|+++||.||+++++. +|.++|||+
T Consensus 3 ~~~~~~~~~~~~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcL 80 (144)
T 1y8m_A 3 KVDFWPTLKDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECL 80 (144)
T ss_dssp TTCSSCCSGGGGCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHH
T ss_pred CCCcchhHHHhcCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHH
Confidence 3456665 7999999999999998446889999999999999999999999999999999985 678999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHHHHHHH
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITAT 147 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~ 147 (164)
||||+||||+|||++|++||+.+|+++|+|+||++|+++|+++|+|||+|||||+||
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~kdGliG~ai~gg 137 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKETLKGVVVAGG 137 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTTTTCCCCCS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhchhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999864
No 2
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-42 Score=270.58 Aligned_cols=129 Identities=26% Similarity=0.490 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176 25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY 103 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y 103 (164)
.+|++|.+||++|+++ .+++++.+++|+|||+|+||+++.++++||.+|+++++. ..|.++|||+||||++|||++||
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCccchHHHHHHHHHHHHHccCH
Confidence 7899999999999999 778889999999999999999999999999999999996 23558899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH
Q 031176 104 AKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGG 155 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g~ 155 (164)
++|++|++++|+++|+|+||+.|++.|++++++||++||||+||+ |+++||
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kdgl~G~~i~gg~-~~~~~g 138 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGM-ALGVAG 138 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCCCSSCSSSS-SCCSSC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999998765 344433
No 3
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=100.00 E-value=1.1e-39 Score=248.80 Aligned_cols=124 Identities=23% Similarity=0.378 Sum_probs=113.2
Q ss_pred cccCCCCCC-CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q 031176 15 FFTGGDQIP-WCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLL 93 (164)
Q Consensus 15 ~~~~~~~lp-~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~L 93 (164)
|.+...++. +.+|++|..||++|+++.+|.+|++++|+|||+||||+++.|+++||.+|+++++. +|.++|||+|||
T Consensus 7 ~~p~~~~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyL 84 (134)
T 3o48_A 7 FWPTLKDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYL 84 (134)
T ss_dssp CCCCTTGGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred ccchHHHhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHH
Confidence 444433332 38999999999999997678899999999999999999999999999999999985 577899999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhHH
Q 031176 94 AVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGVI 140 (164)
Q Consensus 94 Alg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGli 140 (164)
|+||||+|||++|++|++.+|+++|+|+||++|+++|+++|+|||-+
T Consensus 85 Avg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~kd~~~ 131 (134)
T 3o48_A 85 TIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKEENL 131 (134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999853
No 4
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=100.00 E-value=2.8e-39 Score=244.63 Aligned_cols=114 Identities=26% Similarity=0.492 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176 25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY 103 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y 103 (164)
.+|++|++||++|+++ .+++++++++|+|||+||||+++.++++||.||+++++. ++|.++|||+||||+||||+|+|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhH
Confidence 5789999999999999 667799999999999999999999999999999999986 44668999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhhhhH
Q 031176 104 AKSRQILEQCLEIAPDWRQALGLKKTVEDRIAKDGV 139 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~dGl 139 (164)
++|++|++.+|+++|+|+||++|+++|+++|+|||+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999996
No 5
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=4.6e-09 Score=75.64 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=74.6
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+...|.+. ..++.++.+.+++|.++. ..++..+|++.++..+.. +| ...+++|.+|.+|.++|+|++|+++++
T Consensus 32 A~~~~~~al~~~p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 32 AMRHYNEAVKRDPENAILYSNRAACLT---KLMEFQRALDDCDTCIRL--DS-KFIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhhHHH---hhccHHHHHHHHHHHHHh--hh-hhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34445554 456678999999999999 667889999999999986 34 446999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHH
Q 031176 112 QCLEIAPDWRQALGL 126 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L 126 (164)
++|+++|+|.++..-
T Consensus 106 ~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 106 DALQVDPSNEEAREG 120 (126)
T ss_dssp HHHHHCTTCHHHHHH
T ss_pred HHHHHCcCCHHHHHH
Confidence 999999999998753
No 6
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.01 E-value=2e-09 Score=75.57 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=79.1
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++++++..+.||-+|+.+.+.....++..+|+..+.. +| +....+++|+..+++.|+|++|..+|+++|+.+|+++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--Cc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4568999999999999888888889999999999996 45 44599999999999999999999999999999999888
Q ss_pred HHHHHHHHHhH
Q 031176 123 ALGLKKTVEDR 133 (164)
Q Consensus 123 a~~L~~~Ie~~ 133 (164)
...+.+.|++.
T Consensus 79 ~~~i~~~I~~A 89 (93)
T 3bee_A 79 RVTIIESINKA 89 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888774
No 7
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.97 E-value=8.1e-09 Score=80.11 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHH----hcCCCchHHHHHHHHHHHhcCCh-------hHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Q 031176 25 CDRDIIAGCEREVAEA----NDDKQKSESIMRLSWALVHSRQA-------EDVQRGIAMLEASLANSSPPLQQREKLYLL 93 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~----~~~~~s~~~~F~yA~aLi~S~~~-------~d~~~gi~lLe~ll~~~~~~~~~rd~lY~L 93 (164)
++.+-+..+|...... ..++.++++.++++-+|+...+. +.+++||..|+..+.. +| +..+.||+|
T Consensus 10 ~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP-~~~~A~~~L 86 (158)
T 1zu2_A 10 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DP-KKDEAVWCI 86 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CT-TCHHHHHHH
T ss_pred cHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--Cc-CcHHHHHHH
Confidence 5788888887665555 55667899999999999955432 3578999999999996 34 567999999
Q ss_pred HHHHHhhc-----------chHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 94 AVGYYRTG-----------EYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 94 Alg~~kl~-----------~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
+.+|+.+| +|++|++|++++|+++|+|..+..-.+.+++.
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence 99999985 99999999999999999999998888877765
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.4e-08 Score=71.04 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=81.3
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
..+...|.+. ..++.++.+.+++|.++. ..++..+|+..++..+.. +| ...+++|.+|.++.++|+|++|+.+
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~~~~~~A~~~ 94 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALA---KLMSFPEAIADCNKAIEK--DP-NFVRAYIRKATAQIAVKEYASALET 94 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3444555555 445667899999999999 567888999999999986 34 4469999999999999999999999
Q ss_pred HHHHHhhC------CCcHHHHHHHHHHHhHh
Q 031176 110 LEQCLEIA------PDWRQALGLKKTVEDRI 134 (164)
Q Consensus 110 ~~~lL~~e------P~n~Qa~~L~~~Ie~~~ 134 (164)
++++++++ |+|..+......+..++
T Consensus 95 ~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 95 LDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999 99999988888877664
No 9
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.92 E-value=8.6e-09 Score=74.40 Aligned_cols=96 Identities=6% Similarity=-0.046 Sum_probs=75.2
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|.+. ..++.++...++++.++. ..++..+|+..++..+.. +| +..+.+|++|.++.++|+|++|++++++
T Consensus 38 ~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 38 QKIFQALCMLDHYDARYFLGLGACRQ---SLGLYEQALQSYSYGALM--DI-NEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444 445567888889999888 566788899999998885 34 3458889999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHhHhh
Q 031176 113 CLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
++++.|+|++...++..+...+.
T Consensus 112 al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 112 ARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999888887777766543
No 10
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=2.2e-08 Score=75.28 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=77.4
Q ss_pred hhhhhhhcccccCCCCCCC---CCHHHHHHH----------------HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhH
Q 031176 6 SKFFDSIGSFFTGGDQIPW---CDRDIIAGC----------------EREVAEA-NDDKQKSESIMRLSWALVHSRQAED 65 (164)
Q Consensus 6 ~~~~~~~~~~~~~~~~lp~---~~~~~l~~~----------------e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d 65 (164)
+.+-..+.+|+.++..+.. .+|+..... ...|.+. ..++.++...++++.++. ..++
T Consensus 9 ~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~---~~g~ 85 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ---IKEQ 85 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTC
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcc
Confidence 4455666677777666555 566554432 3333333 445567788888888888 5667
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
..+|++.++..+.. +| +..+.+|++|.+|.++|+|++|+.+++++|++.|+.+
T Consensus 86 ~~~Ai~~~~~al~l--~P-~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFAL--GK-NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHH--SS-SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhh--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 78888888888775 34 3448888888888888888888888888888888876
No 11
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.89 E-value=4.2e-08 Score=67.90 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
+++.|.++.++. ..++..+|+..++..+.. .|.. ..+++|++|..++++|+|++|+.+++.+++..|++..+.
T Consensus 39 ~~~~~~lg~~~~---~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 39 PNALYWLGESYY---ATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHHHHHHHH---HhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 389999999999 567889999999999886 2333 268999999999999999999999999999999999998
Q ss_pred HHHHHHHhH
Q 031176 125 GLKKTVEDR 133 (164)
Q Consensus 125 ~L~~~Ie~~ 133 (164)
..+..+...
T Consensus 114 ~a~~~l~~l 122 (129)
T 2xev_A 114 VAQERLQSI 122 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
No 12
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.89 E-value=1.6e-08 Score=74.57 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=76.5
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. ..++.++...++++.++. ..++..+|++.++..+.. +| +..+.+|++|.+|.++|+|++|+.+++++
T Consensus 42 ~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~l--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 42 XVFQALCVLDHYDSRFFLGLGACRQ---AMGQYDLAIHSYSYGAVM--DI-XEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhc--CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334443 445667889999999998 567788999999998885 34 34589999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHhHhh
Q 031176 114 LEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
+++.|+|++...+++.++..+.
T Consensus 116 l~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 116 QELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHCcCCCcchHHHHHHHHHHH
Confidence 9999999888877777766544
No 13
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.84 E-value=1.3e-08 Score=71.16 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=78.6
Q ss_pred HHHHHHH-hc---CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 34 EREVAEA-ND---DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 34 e~~y~~~-~~---~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
...|.+. .. ++....+.++++.++. ..++..+|++.++..+.. +| +..+.++++|.+++++|+|++|+.+
T Consensus 10 ~~~~~~al~~~~~~p~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 10 VPYYEKAIASGLQGKDLAECYLGLGSTFR---TLGEYRKAEAVLANGVKQ--FP-NHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555 22 3456789999999999 677889999999999986 34 4469999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 110 LEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 110 ~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
++++|+..|+++........|...
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999998887777654
No 14
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=7.8e-08 Score=64.22 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=75.4
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+.+.|.+. ..++.++...+++|.++. ..++..+|+..++..+.. +| ...++++.+|..+.++|+|++|+.+++
T Consensus 23 A~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 23 ALQCYSEAIKLDPHNHVLYSNRSAAYA---KKGDYQKAYEDGCKTVDL--KP-DWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHH---hhccHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445544 344557889999999998 567888999999998885 34 445899999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHh
Q 031176 112 QCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
.+++..|++..+......+.+
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 97 EGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHhhc
Confidence 999999999988776666543
No 15
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.82 E-value=3.7e-08 Score=72.14 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=71.2
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.+...|.+. ..++.+....+++++++. ..++..+|+..++..+.. +| ...+++|++|..|+++|+|++|+.++
T Consensus 29 ~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 102 (164)
T 3sz7_A 29 KAIDLYTQALSIAPANPIYLSNRAAAYS---ASGQHEKAAEDAELATVV--DP-KYSKAWSRLGLARFDMADYKGAKEAY 102 (164)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 334445555 445567899999999999 567889999999999986 34 45699999999999999999999999
Q ss_pred HHHHhhCCCcHH
Q 031176 111 EQCLEIAPDWRQ 122 (164)
Q Consensus 111 ~~lL~~eP~n~Q 122 (164)
+++|+++|+|..
T Consensus 103 ~~al~~~p~~~~ 114 (164)
T 3sz7_A 103 EKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHSSSCC
T ss_pred HHHHHhCCCchH
Confidence 999999999987
No 16
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.81 E-value=3.6e-08 Score=72.12 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH-HHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR-QAL 124 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~-Qa~ 124 (164)
...+.+++|.++. ..++..+|+..++..+.. +| ....++|.+|.+|+++|+|++|+.+++++|+++|+|. .+.
T Consensus 62 ~~~~~~nla~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 62 NIPLYANMSQCYL---NIGDLHEAEETSSEVLKR--EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhc--CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4578999999999 677889999999999986 34 4569999999999999999999999999999999999 555
Q ss_pred HHHHHHHhHh
Q 031176 125 GLKKTVEDRI 134 (164)
Q Consensus 125 ~L~~~Ie~~~ 134 (164)
.....+..++
T Consensus 136 ~~l~~~~~~~ 145 (162)
T 3rkv_A 136 REMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 17
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=7.2e-08 Score=67.49 Aligned_cols=80 Identities=10% Similarity=0.137 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
..+.+++|.++. ..++..+|+..++..+.. +| ...+++|.+|..++++|+|++|+.+++++++++|++..+...
T Consensus 65 ~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 65 AVLHRNRAACHL---KLEDYDKAETEASKAIEK--DG-GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHH---HHccHHHHHHHHHHHHhh--Cc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 788889999988 567788999999998885 34 346899999999999999999999999999999999998887
Q ss_pred HHHHHh
Q 031176 127 KKTVED 132 (164)
Q Consensus 127 ~~~Ie~ 132 (164)
...+..
T Consensus 139 l~~~~~ 144 (148)
T 2dba_A 139 LRNISG 144 (148)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 776654
No 18
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=3.8e-08 Score=72.34 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH-HHHHHHhhCCCcHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ-ILEQCLEIAPDWRQA 123 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~-~~~~lL~~eP~n~Qa 123 (164)
.++++.++++.++. ..++..+|+..++..+.. +| +..++++.||..+.++|+|++|.+ +++++++++|+|+.+
T Consensus 63 ~~~~a~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 63 RDPKAHRFLGLLYE---LEENTDKAVECYRRSVEL--NP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp TCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred CCHHHHHHHHHHHH---HcCchHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 34445555555544 233444455555444443 22 223455555555555555544332 234555555555554
Q ss_pred HHHHHHH
Q 031176 124 LGLKKTV 130 (164)
Q Consensus 124 ~~L~~~I 130 (164)
..|+..|
T Consensus 137 ~~l~~~l 143 (150)
T 4ga2_A 137 YKLKEQL 143 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 19
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=1.6e-07 Score=64.38 Aligned_cols=85 Identities=9% Similarity=0.096 Sum_probs=67.0
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
..++.+..+.+++|.++. ..++..+|+..++..+.. +| ...++++.+|..++++|+|++|+++++++++++|++
T Consensus 44 ~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 44 KRNPKDAKLYSNRAACYT---KLLEFQLALKDCEECIQL--EP-TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp TTCTTCHHHHHHHHHHHT---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HcCCCcHHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 334456788888888887 667788899999988875 34 345889999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 031176 121 RQALGLKKTVE 131 (164)
Q Consensus 121 ~Qa~~L~~~Ie 131 (164)
..+......+.
T Consensus 118 ~~~~~~l~~~~ 128 (133)
T 2lni_A 118 KEAADGYQRCM 128 (133)
T ss_dssp THHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 77665554443
No 20
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=7.9e-08 Score=70.63 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176 26 DRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 26 ~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~ 104 (164)
+..++.+.-..|.+. ..++..+...|++|.+.. +.++..+|++.++..+.. +| +..++++.||..|.++|+|+
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~---~~~~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY---EAKEYDLAKKYICTYINV--QE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCchH
Confidence 345666666666666 445557788899999999 677899999999999986 35 45699999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 105 KSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 105 ~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
+|+.+++++|+++|+|..+..-.-.+-.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999987665554433
No 21
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.74 E-value=9.8e-08 Score=66.89 Aligned_cols=89 Identities=21% Similarity=0.277 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS----PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~----~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+++-.|.++..+. +.++..+|+.-++..+.... .+....+++++||.+++++|+|++|+.+.+.+|+++|++.
T Consensus 4 sa~dc~~lG~~~~---~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAY---TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHH---HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 6778899999999 88899999999999777421 1245779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhh
Q 031176 122 QALGLKKTVEDRIAKD 137 (164)
Q Consensus 122 Qa~~L~~~Ie~~~~~d 137 (164)
.+..-+..++..+.++
T Consensus 81 ~~~~n~~~~~~~~~~~ 96 (104)
T 2v5f_A 81 RANGNLKYFEYIMAKE 96 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhc
Confidence 9977666777765544
No 22
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=2.8e-07 Score=62.35 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=72.6
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|.+. ...+.+..+.+.+|+++. ..++..+|++.++..+.. +| ...++++.+|..++++|+|++|..++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 32 VHFYGKAIELNPANAVYFCNRAAAYS---KLGNYAGAVQDCERAICI--DP-AYSKAYGRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH---HhhchHHHHHHHHHHHhc--Cc-cCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3344444 334456888999999998 456788999999998885 34 3458999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHhH
Q 031176 113 CLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
++++.|++..+......+..+
T Consensus 106 ~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 106 ALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcCccchHHHHHHHHHHHH
Confidence 999999998776655554433
No 23
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=4.4e-07 Score=60.89 Aligned_cols=91 Identities=22% Similarity=0.323 Sum_probs=70.0
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|.+. ...+.+..+.+.++.++. ..++..+|+..++..+.. +| ...+.++.+|..+++.|+|++|+.++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 29 IEYYQKALELDPNNAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCcHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3444444 334456788899999988 456788899999988875 23 3458899999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHH
Q 031176 113 CLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~~~I 130 (164)
+++..|++.++......+
T Consensus 103 ~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 103 ALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHH
Confidence 999999998876654443
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.70 E-value=7e-08 Score=71.06 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=56.8
Q ss_pred cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 42 DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 42 ~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.++.+.++.+.++.++. ..++..+|++.++..+.. +| ...++++++|..|.++|+|++|+++++++|+++|+|.
T Consensus 102 ~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~~l~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 102 LNTVYADAYYKLGLVYD---SMGEHDKAIEAYEKTISI--KP-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hCccchHHHHHHHHHHH---HhCCchhHHHHHHHHHHh--cc-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 34556777888888887 556677888888887775 34 3457888888888888888888888888888888775
Q ss_pred H
Q 031176 122 Q 122 (164)
Q Consensus 122 Q 122 (164)
+
T Consensus 176 ~ 176 (184)
T 3vtx_A 176 K 176 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=1.5e-07 Score=65.77 Aligned_cols=94 Identities=9% Similarity=0.079 Sum_probs=65.5
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|.+. ..++.+..+.+++|.++. ..++..+|+..++..+.. +| ...+++|.+|..++++|+|++|+.++++
T Consensus 29 ~~~~~~al~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 29 AACYGRAITRNPLVAVYYTNRALCYL---KMQQPEQALADCRRALEL--DG-QSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444 344556778888888888 556677888888887775 23 3457888888888888888888888888
Q ss_pred HHhhCCC-----cHHHHHHHHHHHhH
Q 031176 113 CLEIAPD-----WRQALGLKKTVEDR 133 (164)
Q Consensus 113 lL~~eP~-----n~Qa~~L~~~Ie~~ 133 (164)
++++.|+ +.........++.+
T Consensus 103 a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 103 AYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 8888887 55555555444443
No 26
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.69 E-value=1.8e-07 Score=60.88 Aligned_cols=78 Identities=23% Similarity=0.377 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+....+++|..+. ..++..+|+..++..+.. +| ...+.++.+|..+++.|+|++|+.+++++++++|++.++..
T Consensus 8 ~~~~~~~la~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHH---HccCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4678888999988 567888999999998885 34 44689999999999999999999999999999999988765
Q ss_pred HHHH
Q 031176 126 LKKT 129 (164)
Q Consensus 126 L~~~ 129 (164)
....
T Consensus 82 ~l~~ 85 (91)
T 1na3_A 82 NLGN 85 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 27
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.68 E-value=3.3e-07 Score=68.99 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
.+.+++|.++. ..++..+|+..++..+.. +| ...+++|.+|.+|+++|+|++|+.+++++++++|++..+....
T Consensus 89 ~~~~~la~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYN---KNKDYPKAIDHASKVLKI--DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 78899999998 567889999999998886 34 4469999999999999999999999999999999999998887
Q ss_pred HHHHhHhh
Q 031176 128 KTVEDRIA 135 (164)
Q Consensus 128 ~~Ie~~~~ 135 (164)
..+...+.
T Consensus 163 ~~~~~~~~ 170 (198)
T 2fbn_A 163 ELCVNKLK 170 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 28
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.4e-07 Score=62.16 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+.+..++.+..+. ..++..+|++.++..+.. +| ...+.++++|.+++++|+|++|+.+++++|+++|++
T Consensus 3 ~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLF---KQGLYREAVHCYDQLITA--QP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4678889999999 778899999999999986 34 446999999999999999999999999999999998
No 29
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.66 E-value=3.7e-08 Score=67.70 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=64.2
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++.++.+.|++|.++. ..++..+|+..++..+.. +| ...+.+++||.+|.++|+|++|+.++++++++.|.+..
T Consensus 3 ~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHL---KHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 4557889999999999 677889999999999986 34 44589999999999999999999999999999876544
Q ss_pred HH
Q 031176 123 AL 124 (164)
Q Consensus 123 a~ 124 (164)
..
T Consensus 77 ~~ 78 (100)
T 3ma5_A 77 QK 78 (100)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 30
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=2.6e-07 Score=67.91 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=70.2
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHH-HHhcCChhHH--HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWA-LVHSRQAEDV--QRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~a-Li~S~~~~d~--~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
...|.+. ..++.++...+++|.+ ... .++. .+|+..++..+.. +| ...++++.+|..|+++|+|++|+.+
T Consensus 64 ~~~~~~al~~~p~~~~~~~~la~~l~~~---~~~~~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~ 137 (177)
T 2e2e_A 64 LLAYRQALQLRGENAELYAALATVLYYQ---ASQHMTAQTRAMIDKALAL--DS-NEITALMLLASDAFMQANYAQAIEL 137 (177)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHH---TTTCCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcccHHHHHHH
Confidence 3334444 3344567788888888 442 2344 7888888888875 34 4458888999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 110 LEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 110 ~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
+++++++.|++.....+...|+.....
T Consensus 138 ~~~al~~~p~~~~~~~~~~~i~~~~~~ 164 (177)
T 2e2e_A 138 WQKVMDLNSPRINRTQLVESINMAKLL 164 (177)
T ss_dssp HHHHHHTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCccHHHHHHHHHHHHHh
Confidence 999999999988887777777765443
No 31
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=1.3e-07 Score=67.38 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+.+.++.+.++.++. ..++..+|+..++..+.. +| +..+.++.||..+.++|+|++|+.+++++|+++|++
T Consensus 48 P~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l--~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 48 PEREEAWRSLGLTQA---ENEKDGLAIIALNHARML--DP-KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 334455555555555 333444555555554443 22 223455555555555555555555555555555544
No 32
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=9.6e-08 Score=71.75 Aligned_cols=81 Identities=5% Similarity=0.047 Sum_probs=69.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
+.+.++.|++|+++. +.++..+|+..++..+.. +| ...++|+.||.++.++|+|++|+.+++++++++|+|..+
T Consensus 33 p~~~~~~~~lg~~~~---~~g~~~eA~~~~~~al~~--~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFY---NKGRIEEAEVFFRFLCIY--DF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 446789999999999 678899999999999986 45 456999999999999999999999999999999999876
Q ss_pred HHHHHHH
Q 031176 124 LGLKKTV 130 (164)
Q Consensus 124 ~~L~~~I 130 (164)
.--.-.+
T Consensus 107 ~~~lg~~ 113 (151)
T 3gyz_A 107 VFHTGQC 113 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
No 33
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.65 E-value=1.3e-07 Score=65.29 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=69.0
Q ss_pred HHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 36 EVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
.|.+. ..++.++...+++|.++. ..++..+|+..++..+.. +| ...+.+|+||..|.++|+|++|+.++++++
T Consensus 7 ~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 7 RLEAMLAQGTDNMLLRFTLGKTYA---EHEQFDAALPHLRAALDF--DP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHH---HccCHHHHHHHHHHHHHH--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44554 445667899999999999 567888999999999986 34 446899999999999999999999999999
Q ss_pred hhCCCcHHHH
Q 031176 115 EIAPDWRQAL 124 (164)
Q Consensus 115 ~~eP~n~Qa~ 124 (164)
++.|++....
T Consensus 81 ~~~~~~~~~~ 90 (115)
T 2kat_A 81 AAAQSRGDQQ 90 (115)
T ss_dssp HHHHHHTCHH
T ss_pred HhccccccHH
Confidence 9999765443
No 34
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=4.8e-07 Score=61.37 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=73.3
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc------hHHHHHHHHHHHHhhcchH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ------QREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~------~rd~lY~LAlg~~kl~~Y~ 104 (164)
.+...|.+. ..++.+..+.+++|.++. ..++..+|+..++..+.. .|.. ..+++|.+|..|+++|+|+
T Consensus 22 ~A~~~~~~a~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 22 TALKHYDKAKELDPTNMTYITNQAAVYF---EKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHH---HhccHHHHHHHHHHHHhh--ccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 344445554 345557889999999998 567888999999998875 1211 1689999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 105 KSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 105 ~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
+|+.+++.++++.| +.........+...+
T Consensus 97 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 97 DAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 99999999999999 566555555554443
No 35
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=1.8e-07 Score=67.29 Aligned_cols=82 Identities=11% Similarity=-0.018 Sum_probs=69.7
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++.+.+..+++|..+. ..++..+|+..++.++.. +| ...++|+.||..++++|+|++|+.+++++++++|+|..
T Consensus 14 ~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQY---QAGKWDDAQKIFQALCML--DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp CHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred CHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 4446788999999999 667889999999999986 34 45699999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q 031176 123 ALGLKKTV 130 (164)
Q Consensus 123 a~~L~~~I 130 (164)
+.-..-.+
T Consensus 88 ~~~~lg~~ 95 (142)
T 2xcb_A 88 FPFHAAEC 95 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76544433
No 36
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=9.9e-07 Score=62.71 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=74.2
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+...|.+. ..++.+..+.+++|.++. ..++..+|++.++..+.. +| ...++++.+|..+.++|+|++|+.+++
T Consensus 32 A~~~~~~al~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 32 AIKFYSQAIELNPSNAIYYGNRSLAYL---RTECYGYALGDATRAIEL--DK-KYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34444444 345557889999999998 567889999999998886 34 445899999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHH
Q 031176 112 QCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~~I 130 (164)
+++++.|++..+.......
T Consensus 106 ~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 106 TVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHH
Confidence 9999999999877554444
No 37
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.60 E-value=3.6e-07 Score=61.05 Aligned_cols=69 Identities=20% Similarity=0.428 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHH-HHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 50 IMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQRE-KLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 50 ~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd-~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.|+.|..+. ..++..+|++.++..+.. +|.. .+ .++.+|..|+++|+|++|+.+++++|+++|++..+.
T Consensus 3 ~~~~a~~~~---~~~~~~~A~~~~~~al~~--~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELI---NQGDIENALQALEEFLQT--EPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHH---HHTCHHHHHHHHHHHHHH--CSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 467788888 667889999999999986 3544 46 999999999999999999999999999999999876
No 38
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.4e-07 Score=63.79 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+.+..++.+..+. ..++..+|++.++..+.. +| ...++++++|.+|+++|+|++|+.+++++++++|++..+.-
T Consensus 3 ~a~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYF---TKSDWPNAVKAYTEMIKR--AP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 4677889999999 677899999999999986 34 44599999999999999999999999999999999987765
Q ss_pred HHHHHHh
Q 031176 126 LKKTVED 132 (164)
Q Consensus 126 L~~~Ie~ 132 (164)
..-.+-.
T Consensus 77 ~lg~~~~ 83 (126)
T 3upv_A 77 RKATAQI 83 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 39
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=2.5e-07 Score=68.06 Aligned_cols=86 Identities=9% Similarity=-0.027 Sum_probs=71.4
Q ss_pred HHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 37 VAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 37 y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
|.+. ..++.+.++.+++|..+. ..++..+|+..++..+.. +| ...++|+.+|.++.++|+|++|+.+++++++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQY---QSGXYEDAHXVFQALCVL--DH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHH---HcCChHHHHHHHHHHHHc--Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444 334557788999999999 677889999999999886 34 4569999999999999999999999999999
Q ss_pred hCCCcHHHHHHHH
Q 031176 116 IAPDWRQALGLKK 128 (164)
Q Consensus 116 ~eP~n~Qa~~L~~ 128 (164)
++|+|..+.-..-
T Consensus 84 l~p~~~~~~~~lg 96 (148)
T 2vgx_A 84 MDIXEPRFPFHAA 96 (148)
T ss_dssp HSTTCTHHHHHHH
T ss_pred cCCCCchHHHHHH
Confidence 9999987755443
No 40
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=4.2e-07 Score=77.11 Aligned_cols=85 Identities=20% Similarity=0.249 Sum_probs=73.3
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
....+.+++|+++. ..++..+|++.++..+.. +| ...+++|.+|.+|+++|+|++|+.+++++|+++|+|..+.
T Consensus 271 ~~~~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~ 344 (370)
T 1ihg_A 271 VALSCVLNIGACKL---KMSDWQGAVDSCLEALEI--DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344 (370)
T ss_dssp HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTT--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHH---hccCHHHHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 35678899999999 567788999999999985 34 4569999999999999999999999999999999999988
Q ss_pred HHHHHHHhHhh
Q 031176 125 GLKKTVEDRIA 135 (164)
Q Consensus 125 ~L~~~Ie~~~~ 135 (164)
.....+...+.
T Consensus 345 ~~l~~~~~~~~ 355 (370)
T 1ihg_A 345 AELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777766543
No 41
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.57 E-value=3.5e-07 Score=65.64 Aligned_cols=82 Identities=7% Similarity=0.067 Sum_probs=69.2
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
...+..++.+..+. +.++..+|++.++..+.. +| ...++++++|.+|+++|+|++|+.+++++|+++|++..+.
T Consensus 11 ~~a~~~~~~G~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 11 ELAQEEKNKGNEYF---KKGDYPTAMRHYNEAVKR--DP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 35677788898998 678899999999999986 35 4569999999999999999999999999999999998876
Q ss_pred HHHHHHHh
Q 031176 125 GLKKTVED 132 (164)
Q Consensus 125 ~L~~~Ie~ 132 (164)
-.+-.+-.
T Consensus 85 ~~lg~~~~ 92 (126)
T 4gco_A 85 IRKAACLV 92 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 42
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=4.8e-07 Score=66.10 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
....+..++.+..+. ..++..+|++.++..+.. +| ...++++.+|..|+++|+|++|+.+++++|+++|+|..+
T Consensus 8 ~~~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 81 (164)
T 3sz7_A 8 TPESDKLKSEGNAAM---ARKEYSKAIDLYTQALSI--AP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA 81 (164)
T ss_dssp CHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 345778889999999 677899999999999986 34 446999999999999999999999999999999999877
Q ss_pred HHHHHHHHhH
Q 031176 124 LGLKKTVEDR 133 (164)
Q Consensus 124 ~~L~~~Ie~~ 133 (164)
....-.+-..
T Consensus 82 ~~~lg~~~~~ 91 (164)
T 3sz7_A 82 WSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655555433
No 43
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=5.4e-07 Score=69.08 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=71.8
Q ss_pred HHHHHHHH-hcCCCchHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMR----------------LSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAV 95 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~----------------yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAl 95 (164)
+...|.+. ..++.++++.|. +|.++. ..++..+|+..++..+.. +| +..++++.||.
T Consensus 23 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~ 96 (208)
T 3urz_A 23 AVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK---KNRNYDKAYLFYKELLQK--AP-NNVDCLEACAE 96 (208)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHH
Confidence 33344444 334445667777 899998 677889999999999986 34 45699999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
.++++|+|++|+.+++++|+++|+|..+....-
T Consensus 97 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 129 (208)
T 3urz_A 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999998765443
No 44
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=6.9e-07 Score=62.25 Aligned_cols=84 Identities=10% Similarity=0.018 Sum_probs=71.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
+.+++..+++|..+. ..++..+|+..++..+.. +| ...++++.+|..++++|+|++|+.+++++++++|++..+
T Consensus 6 ~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 79 (137)
T 3q49_B 6 SPSAQELKEQGNRLF---VGRKYPEAAACYGRAITR--NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 79 (137)
T ss_dssp CCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccHHHHHHHHHHHH---HhCcHHHHHHHHHHHHhh--Cc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH
Confidence 457889999999999 677889999999999886 34 446999999999999999999999999999999999887
Q ss_pred HHHHHHHHhH
Q 031176 124 LGLKKTVEDR 133 (164)
Q Consensus 124 ~~L~~~Ie~~ 133 (164)
....-.+-..
T Consensus 80 ~~~l~~~~~~ 89 (137)
T 3q49_B 80 HFFLGQCQLE 89 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555433
No 45
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=9.4e-07 Score=73.30 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
..+.+++|.++. ..++..+|+..++..+.. +| ....++|.+|.+|+++|+|++|+.+++++|+++|+|..+...
T Consensus 196 ~~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 269 (336)
T 1p5q_A 196 LASHLNLAMCHL---KLQAFSAAIESCNKALEL--DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269 (336)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 589999999999 667889999999999986 34 456999999999999999999999999999999999988877
Q ss_pred HHHHHhHhh
Q 031176 127 KKTVEDRIA 135 (164)
Q Consensus 127 ~~~Ie~~~~ 135 (164)
...+...+.
T Consensus 270 l~~~~~~~~ 278 (336)
T 1p5q_A 270 LAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
No 46
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=6.7e-07 Score=63.56 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
...|+.|..++ ..++..+|+..++..+.. +| ...+.||.||..+.++|+|++|+.+++++++++|++.++....
T Consensus 18 ~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 91 (121)
T 1hxi_A 18 ENPMEEGLSML---KLANLAEAALAFEAVCQK--EP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91 (121)
T ss_dssp SCHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHH---HcCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45789999999 567889999999999986 34 4569999999999999999999999999999999998876544
Q ss_pred HH
Q 031176 128 KT 129 (164)
Q Consensus 128 ~~ 129 (164)
-.
T Consensus 92 a~ 93 (121)
T 1hxi_A 92 AV 93 (121)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.53 E-value=1.4e-06 Score=67.90 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh----------cchHHHHHHHHHHHhhCCCc
Q 031176 51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT----------GEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl----------~~Y~~A~~~~~~lL~~eP~n 120 (164)
|++|+++. ..++..+|+..++.++....+.....+++|+++.+|+++ |+|++|+.+++.+++..|++
T Consensus 152 ~~la~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 152 YEAARLYE---RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHH---HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 99999999 677899999999999986322233668999999999988 99999999999999999999
Q ss_pred HHHHHHHHHH
Q 031176 121 RQALGLKKTV 130 (164)
Q Consensus 121 ~Qa~~L~~~I 130 (164)
..+......+
T Consensus 229 ~~~~~a~~~l 238 (261)
T 3qky_A 229 PLLRTAEELY 238 (261)
T ss_dssp THHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6554444333
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.52 E-value=1.4e-06 Score=67.17 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=74.4
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh---------
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT--------- 100 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl--------- 100 (164)
......|.+. ..++.++++.+++|.++. ..++..+|+..++..+.. +| +..++++.|+..+.++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQL---KLGLVNPALENGKTLVAR--TP-RYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3445566666 556678899999999998 566788899999998885 34 4458999999999999
Q ss_pred --cchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 101 --GEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 101 --~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
|+|++|+.+++++++++|++..+....-.+
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 999999999999999999988766544433
No 49
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=8.1e-07 Score=61.27 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
++..|+.|..+. ..++..+|+..++.++....+.....+.+|++|..++++|+|++|+.+++.+++..|++.
T Consensus 2 ~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 2 ARTAYNVAFDAL---KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp -CCHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred cHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 356789999999 667889999999999885222222238999999999999999999999999999999993
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.50 E-value=1.3e-06 Score=66.37 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcch----------------------
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEY---------------------- 103 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y---------------------- 103 (164)
.+.++++.++. ..++..+|++.++..+.. +| . ..+.++.|+..|+++|+.
T Consensus 118 ~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 191 (228)
T 4i17_A 118 IYYLKEGQKFQ---QAGNIEKAEENYKHATDV--TS-KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAK 191 (228)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHTTS--SC-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHH
T ss_pred HHHHHHhHHHH---HhccHHHHHHHHHHHHhc--CC-CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 56888888888 668899999999999986 34 5 569999999999999999
Q ss_pred -----HHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 104 -----AKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 104 -----~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
++|+.+++++++++|+|..+..+...|...+
T Consensus 192 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 192 ADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999998887654
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.50 E-value=1.5e-06 Score=67.04 Aligned_cols=93 Identities=15% Similarity=0.065 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176 29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
........|.+. ..++.++++.+++++++. ..++..+|+..++..+..+ +..++++.||..+.++|+|++|+
T Consensus 99 ~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYA---LLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---HcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555 446668899999999999 6678889999999999872 45699999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHH
Q 031176 108 QILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
.+++++|+++|+|.++....-
T Consensus 172 ~~~~~al~~~P~~~~~~~~la 192 (217)
T 2pl2_A 172 AQYAKALEQAPKDLDLRVRYA 192 (217)
T ss_dssp HHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHH
Confidence 999999999999998765443
No 52
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.7e-06 Score=60.34 Aligned_cols=83 Identities=14% Similarity=0.059 Sum_probs=70.0
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
++.+....+..|..+. ..++..++++.++..+.. +|.. ..++++.+|..|+++++|++|+.++++++++.|++
T Consensus 24 ~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 24 GASSVEQLRKEGNELF---KCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp TCCCHHHHHHHHHHHH---TTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred chHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 3457888999999999 788899999999999986 3432 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 031176 121 RQALGLKKTV 130 (164)
Q Consensus 121 ~Qa~~L~~~I 130 (164)
.++....-.+
T Consensus 99 ~~~~~~~a~~ 108 (148)
T 2dba_A 99 VKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8766544444
No 53
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=7e-07 Score=77.29 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
..+.+++|+++. ..++..+|+..++..+.. +| +...++|.+|.+|+++++|++|+.+++++|+++|+|..+...
T Consensus 317 ~~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 317 LAAFLNLAMCYL---KLREYTKAVECCDKALGL--DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred HHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 588999999999 667889999999999986 34 456999999999999999999999999999999999988887
Q ss_pred HHHHHhHhh
Q 031176 127 KKTVEDRIA 135 (164)
Q Consensus 127 ~~~Ie~~~~ 135 (164)
...+..++.
T Consensus 391 l~~~~~~~~ 399 (457)
T 1kt0_A 391 ISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765544
No 54
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.49 E-value=1.2e-06 Score=57.88 Aligned_cols=73 Identities=10% Similarity=-0.035 Sum_probs=49.3
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHhh-cchHHHHHHHHHHHhhCCCc
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL-QQREKLYLLAVGYYRT-GEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~-~~rd~lY~LAlg~~kl-~~Y~~A~~~~~~lL~~eP~n 120 (164)
++.+..+.+++|.++. ..++..+|++.++..+.. +|. ...++++.+|..+.++ |+|++|+++++.+++..|++
T Consensus 36 ~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 36 DPEESKYWLMKGKALY---NLERYEEAVDCYNYVINV--IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CcCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 4445667777777777 445566777777777764 232 0347777777777777 77777777777777777765
No 55
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=8.7e-07 Score=58.62 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC--cH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD--WR 121 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~--n~ 121 (164)
+.+.+..+.+|..+. ..++..+|+..++..+.. +| ...+.++.+|..++++|+|++|+.++++++++.|+ +.
T Consensus 3 p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 3 DQNPEEYYLEGVLQY---DAGNYTESIDLFEKAIQL--DP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp CSSTTGGGGHHHHHH---SSCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred CCcHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 345678888999998 667889999999998886 34 44689999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhHh
Q 031176 122 QALGLKKTVEDRI 134 (164)
Q Consensus 122 Qa~~L~~~Ie~~~ 134 (164)
++....-.+....
T Consensus 77 ~~~~~l~~~~~~~ 89 (112)
T 2kck_A 77 DVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 7766555554333
No 56
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=1.2e-06 Score=59.83 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=69.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
+.+..+.+++|..+. ..++..+|++.++..+.. +| ...++++.+|..+.+.|+|++|++++++++++.|++.++
T Consensus 13 ~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECF---QKGDYPQAMKHYTEAIKR--NP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHH---HTTCSHHHHHHHHHHHTT--CT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 446889999999999 677889999999999885 34 446999999999999999999999999999999999877
Q ss_pred HHHHHHHH
Q 031176 124 LGLKKTVE 131 (164)
Q Consensus 124 ~~L~~~Ie 131 (164)
....-.+-
T Consensus 87 ~~~la~~~ 94 (133)
T 2lni_A 87 YTRKAAAL 94 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554443
No 57
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=1.6e-06 Score=57.66 Aligned_cols=80 Identities=11% Similarity=0.248 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
..+..+..|..+. ..++..+|+..++..+.. +| ...++++.+|..++++|+|++|..+++++++..|++.++..
T Consensus 3 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKAL---SVGNIDDALQCYSEAIKL--DP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHH---HcccHHHHHHHHHHHHHH--CC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence 4678889999999 567889999999998885 34 44689999999999999999999999999999999987665
Q ss_pred HHHHHH
Q 031176 126 LKKTVE 131 (164)
Q Consensus 126 L~~~Ie 131 (164)
..-.+-
T Consensus 77 ~~a~~~ 82 (118)
T 1elw_A 77 RKAAAL 82 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.47 E-value=3.7e-07 Score=70.24 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=69.2
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc-----hHHHHHHHHHHHHhhcchHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ-----QREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~-----~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
...|.+. ...+.+..+.+.++.++....+..+..+|+..++..+......+. ..+++++||..|.+.|+|++|+
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3344444 445556788899999988665533355566666665543111111 2379999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 108 QILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
.+++++|+++|+|.+++.....+....
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999999999998877765543
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.42 E-value=4.5e-06 Score=63.43 Aligned_cols=85 Identities=7% Similarity=0.012 Sum_probs=69.3
Q ss_pred HHHHHHHH-hcCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 33 CEREVAEA-NDDK-QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 33 ~e~~y~~~-~~~~-~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
+...|.+. ..++ ++..+.+++|.++. ..++..+|++.++..+.. +| ...++++.+|..|+++|+|++|+.++
T Consensus 26 A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 26 AFEKYSEYLKLTNNQDSVTAYNCGVCAD---NIKKYKEAADYFDIAIKK--NY-NLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--TC-SHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHH---HhhcHHHHHHHHHHHHHh--Cc-chHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33444444 3333 57788999999999 567888999999999985 34 56799999999999999999999999
Q ss_pred HHHHhhCCCcHHH
Q 031176 111 EQCLEIAPDWRQA 123 (164)
Q Consensus 111 ~~lL~~eP~n~Qa 123 (164)
+++++++|+|...
T Consensus 100 ~~al~~~p~~~~~ 112 (228)
T 4i17_A 100 TEGIKAVPGNATI 112 (228)
T ss_dssp HHHHHHSTTCHHH
T ss_pred HHHHHHCCCcHHH
Confidence 9999999999843
No 60
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.41 E-value=3.4e-06 Score=65.73 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh--------hcchHHHHHHHHHHHhhCC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR--------TGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k--------l~~Y~~A~~~~~~lL~~eP 118 (164)
+++.|.+|.++. ..++..+|+..++.++....+.+...+.+|.+|.++++ +|+|++|+.+++++++..|
T Consensus 52 ~~a~~~lg~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 52 ADAQFYLARAYY---QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 788999999999 66788899999999888532233556889999999999 9999999999999999999
Q ss_pred CcHHHHHHH
Q 031176 119 DWRQALGLK 127 (164)
Q Consensus 119 ~n~Qa~~L~ 127 (164)
++..+....
T Consensus 129 ~~~~~~~a~ 137 (261)
T 3qky_A 129 NHELVDDAT 137 (261)
T ss_dssp TCTTHHHHH
T ss_pred CchhHHHHH
Confidence 987666444
No 61
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.41 E-value=4.1e-06 Score=65.86 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
...+.+|+++. ..++..+|++.++..+.. +| ...+.++.+|..+.++|+|++|+.+++++++++|+|.++....
T Consensus 273 ~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 273 RSKERICHCFS---KDEKPVEAIRICSEVLQM--EP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHH---HccCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 44667888888 567889999999999885 34 4458999999999999999999999999999999999998887
Q ss_pred HHHHhHhhh
Q 031176 128 KTVEDRIAK 136 (164)
Q Consensus 128 ~~Ie~~~~~ 136 (164)
..+...+.+
T Consensus 347 ~~~~~~~~~ 355 (359)
T 3ieg_A 347 EKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666543
No 62
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.40 E-value=3.8e-06 Score=56.44 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=65.4
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.+...|.+. ..++.+..+.+.++..+. ..++..+++..++..+.. .| ...+.++.++..+++.|+|++|++++
T Consensus 19 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 19 EAIEYYQKALELDPRSAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-RSAEAWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhHHHHHHHHHH---HhcCHHHHHHHHHHHHHH--CC-CchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344444444 334446777888888887 456778888888887775 23 33578888888888999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHH
Q 031176 111 EQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~~~ 129 (164)
+++++..|++..+....-.
T Consensus 93 ~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 93 QKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHH
Confidence 9988888888765544433
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.39 E-value=4.7e-06 Score=72.14 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhc-----CChhHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHh
Q 031176 28 DIIAGCEREVAEA-NDDKQKSESIMRLSWALVHS-----RQAEDVQRGIAMLEASLANSSPPL--QQREKLYLLAVGYYR 99 (164)
Q Consensus 28 ~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S-----~~~~d~~~gi~lLe~ll~~~~~~~--~~rd~lY~LAlg~~k 99 (164)
.....+...|.+. ..++.+..+.++++.++... .+.++..+|++.++..+.. +|. ...+.+++||..|++
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHH
Confidence 4555666666666 55666889999999999843 2348999999999999985 341 556999999999999
Q ss_pred hcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 100 TGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 100 l~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
+|+|++|+.+++++++++|+|..+......+...
T Consensus 271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999876655554443
No 64
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.4e-06 Score=64.47 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=57.5
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...+.+. ..++....+.+++++.+. ..++..+|+..++..+.. +| ...++++.+|..++++|+|++|+.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEARLEGKEYF---TKSDWPNAVKAYTEMIKR--AP-EDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--Cc-ccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3334433 334445667777777777 445666777777776664 23 2346777777777777777777777777
Q ss_pred HHhhCCCcHHHHHHHHHH
Q 031176 113 CLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~~~I 130 (164)
++++.|++..+....-.+
T Consensus 199 al~~~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATA 216 (258)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777776655444444
No 65
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.37 E-value=1.8e-06 Score=64.88 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.+..+.+.+|.++. ..++..+|+..++..+.. .| ...++++.+|..+++.|+|++|+.+++++++..|++..+.
T Consensus 123 ~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (243)
T 2q7f_A 123 ENGDLFYMLGTVLV---KLEQPKLALPYLQRAVEL--NE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196 (243)
T ss_dssp CSHHHHHHHHHHHH---HTSCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 34555566666655 344555566666665553 12 2235566666666666666666666666666666655443
Q ss_pred H
Q 031176 125 G 125 (164)
Q Consensus 125 ~ 125 (164)
.
T Consensus 197 ~ 197 (243)
T 2q7f_A 197 Y 197 (243)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.36 E-value=2.5e-06 Score=65.25 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=68.8
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHH----------------HHHHHHhhcchHHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYL----------------LAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~----------------LAlg~~kl~~Y~~A~~ 108 (164)
++.+..+..+..++ +.++..+|+..++..+.. +| +..+.+|+ +|..|.++|+|++|+.
T Consensus 2 ~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 2 QSVDEMLQKVSAAI---EAGQNGQAVSYFRQTIAL--NI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp -CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 36788899999999 677899999999999986 34 55689999 9999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHH
Q 031176 109 ILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+++++|+++|+|..+....-.+
T Consensus 76 ~~~~al~~~p~~~~~~~~lg~~ 97 (208)
T 3urz_A 76 FYKELLQKAPNNVDCLEACAEM 97 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999876555444
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.35 E-value=1e-05 Score=54.24 Aligned_cols=72 Identities=25% Similarity=0.450 Sum_probs=49.6
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
++.+..+.++++..+. ..++..+|+..++..+.. .| ...++++.+|..+++.|++++|+.+++.+++..|++
T Consensus 65 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 65 DPRSAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp CTTCHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCCchHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 3445666777777776 556677777777776664 22 334677777777777777777777777777777763
No 68
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=4.1e-06 Score=59.73 Aligned_cols=94 Identities=7% Similarity=-0.006 Sum_probs=70.6
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHhhcchHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS----PPLQQREKLYLLAVGYYRTGEYAK 105 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~----~~~~~rd~lY~LAlg~~kl~~Y~~ 105 (164)
..+...|.+. .-++....+.+++|.++. ..++..+|++.++..+.... +....-.+++.++..+.++++|++
T Consensus 25 ~~A~~~y~~Al~~~p~~~~~~~nlg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~ 101 (127)
T 4gcn_A 25 EKAHVHYDKAIELDPSNITFYNNKAAVYF---EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL 101 (127)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHhHHHHHH---HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455556665 446667899999999999 66788899999988776410 011223588999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHH
Q 031176 106 SRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 106 A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
|+++++++|+..|+..-...|+
T Consensus 102 A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 102 AVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCcCHHHHHHHH
Confidence 9999999999999765555544
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.34 E-value=5.4e-06 Score=61.87 Aligned_cols=79 Identities=23% Similarity=0.248 Sum_probs=63.8
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCC-------------CchHHHHHHHHHHHHhhcchHHHH
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPP-------------LQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~-------------~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
..++....+.+++|.++. ..++..+|++.++..+....+. +...+++|++|..|+++|+|++|+
T Consensus 65 ~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 65 NRDKHLAVAYFQRGMLYY---QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCccchHHHHHHHHHHH---HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 345567889999999999 5677889999999988852111 123489999999999999999999
Q ss_pred HHHHHHHhhCCCcHH
Q 031176 108 QILEQCLEIAPDWRQ 122 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Q 122 (164)
.++++++++.|++..
T Consensus 142 ~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 142 EQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHTTCCSGGG
T ss_pred HHHHHHHHcCccccc
Confidence 999999999998754
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.34 E-value=1.3e-06 Score=62.28 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=72.8
Q ss_pred HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
...+...+.+. ...+.+..+.+++|..+. ..++..+|++.++..+.. .| ...+.++.+|..+++.|+|++|..
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYV---QVQKYDLAVPLLIKVAEA--NP-INFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--Cc-HhHHHHHHHHHHHHHcCcHHHHHH
Confidence 34444555555 445557788888898888 566778899999888875 23 345888999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 109 ILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
+++.+++..|++..+....-.+-.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHH
Confidence 999999999998776655544443
No 71
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=4.7e-06 Score=72.77 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176 29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
+...+...|.+. ..++.+..+.+++|.++. ..++..+|++.++..+.. +| ...+++|.+|.+|+++|+|++|+
T Consensus 21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~l--~p-~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYL---RTECYGYALGDATRAIEL--DK-KYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHS--CT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 455666777777 456667999999999999 667889999999999986 34 44689999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHH
Q 031176 108 QILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
++++++|+++|++..+......+
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999887766555
No 72
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.33 E-value=3.1e-06 Score=65.25 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+++..|+.|..++ ..++..+|+..|+.++....+.+...+.+|.+|.+|+++|+|++|+.+++++++..|++..
T Consensus 3 ~~~~~~~~a~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 3 PPNEIYATAQQKL---QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp CHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 6788999999999 7789999999999999852222234689999999999999999999999999999999975
No 73
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=8.1e-07 Score=73.86 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
.+.+++|.++. ..++..+|+..++..+.. +| ....+||.+|.+|+++|+|++|+.+++++|+++|+|..+....
T Consensus 231 ~~~~nla~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L 304 (338)
T 2if4_A 231 PCHLNIAACLI---KLKRYDEAIGHCNIVLTE--EE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304 (338)
T ss_dssp HHHHHHHHHHH---TTTCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 37889999999 677888999999999986 34 4569999999999999999999999999999999999988877
Q ss_pred HHHHhH
Q 031176 128 KTVEDR 133 (164)
Q Consensus 128 ~~Ie~~ 133 (164)
..+..+
T Consensus 305 ~~l~~~ 310 (338)
T 2if4_A 305 RALAEQ 310 (338)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 666443
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.32 E-value=5e-06 Score=60.97 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
++...|+++.+.. ..++.++|++.++..+.. +| +..++++.||..|.++|+|++|+.+++.+++..|++..+..
T Consensus 4 ~~~iy~~lG~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKR---TKGDFDGAIRAYKKVLKA--DP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 5666777777766 566677777777777664 34 33477777777777777777777777777777777766655
Q ss_pred HHHHH
Q 031176 126 LKKTV 130 (164)
Q Consensus 126 L~~~I 130 (164)
..-.+
T Consensus 78 ~~~~~ 82 (184)
T 3vtx_A 78 ILGSA 82 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 75
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.31 E-value=8.8e-06 Score=61.28 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=71.8
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. ..++.++.+.+++|.++. ..++..+|+..++..+.. +| ...++++.+|..+.++|+|++|+.+++++
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALA---KLMSFPEAIADCNKAIEK--DP-NFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHh--CH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334443 344557889999999998 566788999999998886 34 44689999999999999999999999999
Q ss_pred HhhC------CCcHHHHHHHHH
Q 031176 114 LEIA------PDWRQALGLKKT 129 (164)
Q Consensus 114 L~~e------P~n~Qa~~L~~~ 129 (164)
+++. |+|..+..+...
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 9999 999887776553
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.29 E-value=1e-05 Score=59.62 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=49.1
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQA-EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~-~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
+...|.+. ..++.+..+.++++.++. .. ++..+|+..++..+.. ...+...+.++.+|..+.+.|+|++|+.++
T Consensus 61 A~~~~~~a~~~~~~~~~~~~~l~~~~~---~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 61 AQESFRQALSIKPDSAEINNNYGWFLC---GRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHH---HhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33334443 223345556666666666 44 5556666666665552 122334466666666666666666666666
Q ss_pred HHHHhhCCCcHHHH
Q 031176 111 EQCLEIAPDWRQAL 124 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~ 124 (164)
+.+++..|++..+.
T Consensus 137 ~~~~~~~~~~~~~~ 150 (225)
T 2vq2_A 137 KRSLAAQPQFPPAF 150 (225)
T ss_dssp HHHHHHSTTCHHHH
T ss_pred HHHHHhCCCCchHH
Confidence 66666666665443
No 77
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=4.5e-06 Score=56.25 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
.....+.+|..+. ..++..+|++.++..+.. +| ...+.++.+|..+++.|+|++|+.+++.+++..|++..+..
T Consensus 11 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQM---KVENFEAAVHFYGKAIEL--NP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHH---HccCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 5677888888888 566888999999998885 34 34689999999999999999999999999999999987655
Q ss_pred HHHHH
Q 031176 126 LKKTV 130 (164)
Q Consensus 126 L~~~I 130 (164)
..-.+
T Consensus 85 ~~~~~ 89 (131)
T 2vyi_A 85 RMGLA 89 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.28 E-value=1.8e-05 Score=56.21 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=72.5
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
..+...|.+. ...+.+..+.+.++.++. ..++..+|++.++..+.. +| ...++++.+|..+.+.|+|++|+++
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYV---KTGAVDRGTELLERSLAD--AP-DNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444455554 444557888899999998 566788999999998875 23 4468999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHH
Q 031176 110 LEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 110 ~~~lL~~eP~n~Qa~~L~~~I 130 (164)
++++++..|++..+....-.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcCcHhHHHHHHHHHH
Confidence 999999999988765544433
No 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.28 E-value=2.8e-05 Score=57.24 Aligned_cols=82 Identities=15% Similarity=0.036 Sum_probs=62.5
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC-CcHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP-DWRQA 123 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP-~n~Qa 123 (164)
....+.+++++++. ..++..+|++.++..+.. .| ...++++.+|..+.+.|+|++|+.+++++++..| ++..+
T Consensus 111 ~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 111 TPYIANLNKGICSA---KQGQFGLAEAYLKRSLAA--QP-QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp CHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred chHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 34677888888888 566778888888888775 23 3458888888888888888888888888888888 88777
Q ss_pred HHHHHHHHh
Q 031176 124 LGLKKTVED 132 (164)
Q Consensus 124 ~~L~~~Ie~ 132 (164)
..+...+..
T Consensus 185 ~~~~~~~~~ 193 (225)
T 2vq2_A 185 LLLGWKIAK 193 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544443
No 80
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.27 E-value=8.5e-06 Score=66.16 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.+...+|+.++++++.. .| ...+.++.+|+++.++|+|++|..+++++|+++|+|..+.
T Consensus 179 ~~~~~eA~~~~~~~l~~--~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK--CS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp TTHHHHHHHHHHHHHHH--SC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 35556666666665554 23 2335566666666666666666666666666666665543
No 81
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.27 E-value=1.3e-05 Score=61.31 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=56.9
Q ss_pred cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 42 DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 42 ~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.++....+.+++|.++. ..++..+|++.++..+.. +| ...++++.+|..++++|+|++|+.++++++++.|++.
T Consensus 72 ~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 72 IRPDMPEVFNYLGIYLT---QAGNFDAAYEAFDSVLEL--DP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCCCcHHHHHHHHHHHH---HccCHHHHHHHHHHHHhc--Cc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 34456777888888877 456777888888887775 23 3357888888888888888888888888888888887
Q ss_pred HH
Q 031176 122 QA 123 (164)
Q Consensus 122 Qa 123 (164)
.+
T Consensus 146 ~~ 147 (275)
T 1xnf_A 146 FR 147 (275)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.27 E-value=2.1e-05 Score=60.56 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh------------------hcchHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR------------------TGEYAKSR 107 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k------------------l~~Y~~A~ 107 (164)
..++.|++|+++. ..++..+|+..++.++....+.....+++|+++.++++ .|++++|+
T Consensus 40 ~~~a~~~lg~~~~---~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 116 (225)
T 2yhc_A 40 SQQVQLDLIYAYY---KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF 116 (225)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence 4689999999999 66789999999999998632222334799999999997 57999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHH
Q 031176 108 QILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
.+++++++..|++..+...+..
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~ 138 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKR 138 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHH
T ss_pred HHHHHHHHHCcCChhHHHHHHH
Confidence 9999999999999977654443
No 83
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.27 E-value=1.4e-05 Score=61.28 Aligned_cols=77 Identities=5% Similarity=-0.009 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.+..+.+.+|.++. ..++..+|++.++..+....++.....+++.+|..+.++|+|++|+.+++++++++|++..+.
T Consensus 35 ~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 111 (272)
T 3u4t_A 35 NSPYIYNRRAVCYY---ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111 (272)
T ss_dssp CCSTTHHHHHHHHH---HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence 34455555555555 344455566666555553222222234455666666666666666666666666666555443
No 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.26 E-value=9.7e-06 Score=54.12 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+..+.+.++.++. ..++..+|+++++..+.. .| ...+.++.+|..+++.|+|++|+.+++++++..|++..+..
T Consensus 8 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 8 SAEAWYNLGNAYY---KQGDYDEAIEYYQKALEL--DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--Cc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 3678888999988 567888999999998885 23 44689999999999999999999999999999999986654
Q ss_pred HH
Q 031176 126 LK 127 (164)
Q Consensus 126 L~ 127 (164)
..
T Consensus 82 ~l 83 (125)
T 1na0_A 82 NL 83 (125)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 85
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.21 E-value=2.2e-05 Score=63.27 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHH-hcCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176 27 RDIIAGCEREVAEA-NDDKQ--KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY 103 (164)
Q Consensus 27 ~~~l~~~e~~y~~~-~~~~~--s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y 103 (164)
......+...|.+. ..++. .+.+.++++..+. ..++..+|++.++..+.. +| ...++++.++..|.++|+|
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH---LSGEFNRAIDAFNAALTV--RP-EDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCH
Confidence 44566666677776 33333 6889999999998 677889999999998886 34 4458999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 104 AKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
++|+.++++++++.|++..+....-.+
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~ 290 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 999999999999999997665544333
No 86
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.21 E-value=2.1e-06 Score=61.35 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
...+..+++..+. ..++..+|++.++..+.. +| ...++++++|.+|+++|+|++|+.+++++|+++|++..
T Consensus 7 ~A~a~~~lG~~~~---~~~~~~~A~~~y~~Al~~--~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 7 AAIAEKDLGNAAY---KQKDFEKAHVHYDKAIEL--DP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 3556678888888 677899999999999986 45 44599999999999999999999999999999998764
No 87
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.20 E-value=3e-05 Score=58.90 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=62.7
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. ..++.+..+.++++.++. ..++..+|++.++..+.. ...+...+.++.+|..+++.|+|++|+.+++++
T Consensus 92 ~~~~~a~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 92 EEYRKALASDSRNARVLNNYGGFLY---EQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCcHHHHHHHHHHHH---HHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334433 334456778888888887 456777888888887762 123455678888888888888888888888888
Q ss_pred HhhCCCcHHHHHHH
Q 031176 114 LEIAPDWRQALGLK 127 (164)
Q Consensus 114 L~~eP~n~Qa~~L~ 127 (164)
++..|++..+....
T Consensus 168 ~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 168 LRLNRNQPSVALEM 181 (252)
T ss_dssp HHHCSCCHHHHHHH
T ss_pred HhcCcccHHHHHHH
Confidence 88888876655443
No 88
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.20 E-value=1.7e-05 Score=60.24 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=64.5
Q ss_pred HHHHHHHHHHH-h--cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176 30 IAGCEREVAEA-N--DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS 106 (164)
Q Consensus 30 l~~~e~~y~~~-~--~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A 106 (164)
...+.+.|.+. . ..+....+.+++|.++. ..++..+|++.++..+.. .| ...++++.+|..++++|+|++|
T Consensus 121 ~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSL---QMKKPAQAKEYFEKSLRL--NR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCccCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--Cc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555 3 33345667777777777 456677778888777764 23 3357778888888888888888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 107 RQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 107 ~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
+.+++++++..|++..+..+...+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAK 220 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 88888888888877776655554433
No 89
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.20 E-value=7.5e-06 Score=59.92 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHhhcch-
Q 031176 27 RDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG-YYRTGEY- 103 (164)
Q Consensus 27 ~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg-~~kl~~Y- 103 (164)
......+...|.+. ..++.+..+.+.+|.++. ..++..+|+..++..+.. +| ...+.++.+|.. +++.|+|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYL---WQNDYSNSLLAYRQALQL--RG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--HC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhcCCcc
Confidence 33444455555555 445567899999999999 567889999999998885 34 346899999999 8899999
Q ss_pred -HHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 104 -AKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 104 -~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
++|+.+++.+++.+|++..+....-.+-
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~ 125 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDA 125 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9999999999999999988766554443
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.19 E-value=1.2e-05 Score=74.45 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=50.7
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|++. .-++...++.++++.++. ..++.++|++.++..+.. +| +.-+++++||..|.++|+|++|+.++++
T Consensus 63 ~~~~~~Al~l~P~~~~a~~nLg~~l~---~~g~~~~A~~~~~kAl~l--~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 63 LMHYKEAIRISPTFADAYSNMGNTLK---EMQDVQGALQCYTRAIQI--NP-AFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444 334445666666666666 445566666666666664 23 3346666666666666666666666666
Q ss_pred HHhhCCCcHHHHH
Q 031176 113 CLEIAPDWRQALG 125 (164)
Q Consensus 113 lL~~eP~n~Qa~~ 125 (164)
+|+++|++..+..
T Consensus 137 Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 137 ALKLKPDFPDAYC 149 (723)
T ss_dssp HHHHCSCCHHHHH
T ss_pred HHHhCCCChHHHh
Confidence 6666666665543
No 91
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.19 E-value=2.5e-05 Score=58.53 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=69.1
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
..+...|.+. ..++....+.+.+|.++. ..++..+|++.++..+.. .| ...+.++.+|..+.+.|+|++|+.+
T Consensus 74 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 74 ERALAFYDKALELDSSAATAYYGAGNVYV---VKEMYKEAKDMFEKALRA--GM-ENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TC-CSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhccHHHHHHH
Confidence 3444455555 334556788888888888 566778888888888775 23 3457888899999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHH
Q 031176 110 LEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 110 ~~~lL~~eP~n~Qa~~L~~~I 130 (164)
++++++..|++..+....-.+
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 148 LQRAVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHH
Confidence 999999999887765544433
No 92
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.19 E-value=1.5e-05 Score=56.44 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
..+..++.|..+. ..++..+|+..++..+.. +| ...++++.+|..++++|+|++|+.++++++++.|++.++..
T Consensus 12 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 85 (166)
T 1a17_A 12 RAEELKTQANDYF---KAKDYENAIKFYSQAIEL--NP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 4577788888888 567889999999998886 34 44699999999999999999999999999999999987655
Q ss_pred HHHHH
Q 031176 126 LKKTV 130 (164)
Q Consensus 126 L~~~I 130 (164)
..-.+
T Consensus 86 ~~a~~ 90 (166)
T 1a17_A 86 RRAAS 90 (166)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.18 E-value=1.9e-05 Score=68.85 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=69.5
Q ss_pred HHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 33 CEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 33 ~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
+...|++. ..++.+.++.+++|.++. ..++..+|++.++..+.. +| +..++++.||..|.++|+|++|+++++
T Consensus 42 A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 42 GEMAVQRGLALHPGHPEAVARLGRVRW---TQQRHAEAAVLLQQASDA--AP-EHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HHHHHHHHHTTSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhc--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444 445557788888888888 556778888888888875 34 345888888888888888888888888
Q ss_pred HHHhhCCCcHHHHHHHHHHHhH
Q 031176 112 QCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
++++++|++..+....-.+...
T Consensus 116 ~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 116 RAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHH
Confidence 8888888887766555444433
No 94
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.18 E-value=1.3e-05 Score=74.21 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=78.7
Q ss_pred HHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 30 IAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 30 l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
...+...|++. .-++...++.+++|.++. +.++..+|++.++..++. +| +.-+++++||..+.++|+|++|++
T Consensus 25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~---~~g~~~eA~~~~~~Al~l--~P-~~~~a~~nLg~~l~~~g~~~~A~~ 98 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQ---QQGKLQEALMHYKEAIRI--SP-TFADAYSNMGNTLKEMQDVQGALQ 98 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34556667776 556668899999999999 677888999999999986 34 556999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHH
Q 031176 109 ILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+++++|+++|++..+..-.-.+
T Consensus 99 ~~~kAl~l~P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 99 CYTRAIQINPAFADAHSNLASI 120 (723)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999998776554444
No 95
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=2.4e-05 Score=63.66 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=53.5
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
..+...|.+. ..++.++++.++++.++. ..++..+|++.++..+.. .| ...+.++.++..+.+.|+|++|+.+
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALK---EKGSVAEAEDCYNTALRL--CP-THADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--Cc-ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444445554 334445666666666666 445566666666666664 23 3346666677777777777777777
Q ss_pred HHHHHhhCCCcHHHHH
Q 031176 110 LEQCLEIAPDWRQALG 125 (164)
Q Consensus 110 ~~~lL~~eP~n~Qa~~ 125 (164)
+++++++.|++..+..
T Consensus 328 ~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHS 343 (388)
T ss_dssp HHHHTTSCTTCHHHHH
T ss_pred HHHHHhcCCCcHHHHH
Confidence 7777776666654433
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.17 E-value=1.1e-05 Score=70.30 Aligned_cols=96 Identities=17% Similarity=0.064 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176 29 IIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
+...+...|++. ..++.+.++.+++|.++. ..++..+|++.++..+.. +| +..++++.||..|+++|+|++|+
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAEL---GMGDTTAGEMAVQRGLAL--HP-GHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -----------------CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHTT--ST-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 344555566666 445567899999999999 677899999999999986 34 44699999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHH
Q 031176 108 QILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 108 ~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
++++++++++|++.++....-.+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~ 100 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999998766544433
No 97
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=1.8e-05 Score=63.64 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=70.7
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
..+...|.+. ..++.+....+++|.++. ..++..+|+..++..+.. +| ....++|++|.+|.++|+|++|+.+
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYL---KMQQPEQALADCRRALEL--DG-QSVKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTS--CT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555555 445668899999999999 567889999999998885 34 4459999999999999999999999
Q ss_pred HHHHHhhCCCcH
Q 031176 110 LEQCLEIAPDWR 121 (164)
Q Consensus 110 ~~~lL~~eP~n~ 121 (164)
++++++++|++.
T Consensus 95 ~~~al~l~p~~~ 106 (281)
T 2c2l_A 95 LQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHhCccch
Confidence 999999999873
No 98
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=1e-05 Score=58.80 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=64.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC------CC---------CCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS------SP---------PLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~------~~---------~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.....++.+..+. ..++..+|+..++..+... .+ .+....+++++|.+|+++|+|++|+.++
T Consensus 10 ~a~~~~~~G~~~~---~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELF---VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4566778888888 5567777777777766530 01 1234589999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHh
Q 031176 111 EQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
+++|+++|+|..+.-.+-.+-.
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~ 108 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARI 108 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHH
Confidence 9999999999987665555443
No 99
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.15 E-value=1.8e-05 Score=60.50 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHH-hc----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh
Q 031176 25 CDRDIIAGCEREVAEA-ND----DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR 99 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~----~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k 99 (164)
....+.......|.+. .. ++....+.+.+|.++. ..++..+|++.++..+.. +| ...++++.+|..+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD---SLGLRALARNDFSQALAI--RP-DMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH---HcccHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHH
Confidence 3345666666677766 22 2235788889999998 667888999999999986 34 456899999999999
Q ss_pred hcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176 100 TGEYAKSRQILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 100 l~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
.|+|++|+++++++++++|++..+....-.
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 999999999999999999998866544433
No 100
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.15 E-value=3.5e-05 Score=63.37 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
....+++++++. ..++..+|++.++..+.. +| ...+.++.+|.++.++|+|++|..+++++++++|++..+...
T Consensus 295 ~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~--~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 295 VRSKERICHCFS---KDEKPVEAIRVCSEVLQM--EP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp HHHHHHHHHHHH---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 457888899998 667889999999998875 34 445999999999999999999999999999999999998877
Q ss_pred HHHHHhHh
Q 031176 127 KKTVEDRI 134 (164)
Q Consensus 127 ~~~Ie~~~ 134 (164)
...+....
T Consensus 369 l~~~~~~~ 376 (450)
T 2y4t_A 369 LEKAQRLL 376 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77665443
No 101
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.15 E-value=4.7e-05 Score=59.26 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176 25 CDRDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY 103 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y 103 (164)
........+.+.|.+. ...+.+..+.+.+++.+. ..++..+|++.++..+.. +| ...++++.+|..+.+.|+|
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN---LSNNYDSAAANLRRAVEL--RP-DDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcCCH
Confidence 3444555666666666 445557899999999998 567788999999998886 34 4458999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176 104 AKSRQILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
++|+.+++++++..|++..+....-.
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999998876554433
No 102
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.14 E-value=2.3e-05 Score=63.60 Aligned_cols=93 Identities=11% Similarity=0.002 Sum_probs=76.0
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHH-HHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAK-SRQI 109 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~-A~~~ 109 (164)
.....|.+. ...+.++.+.+++|.++. ..++..+|++.|+..+.. +| +.-+.++++++.+..+|++++ +.++
T Consensus 184 eA~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~eA~~~l~~al~~--~p-~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPTLLLLNGQAACHM---AQGRWEAAEGVLQEALDK--DS-GHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344445544 446668899999999999 677889999999999986 35 445999999999999999986 6799
Q ss_pred HHHHHhhCCCcHHHHHHHHHH
Q 031176 110 LEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 110 ~~~lL~~eP~n~Qa~~L~~~I 130 (164)
++++++++|+|+.+..+.+.-
T Consensus 258 ~~~~~~~~P~~~~~~d~~~~~ 278 (291)
T 3mkr_A 258 LSQLKDAHRSHPFIKEYRAKE 278 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHH
Confidence 999999999999998876543
No 103
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.13 E-value=2.4e-05 Score=61.42 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=74.2
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
..+...|.+. ..++.++++.+++|+++. ..++..+|+..++..+.. +| ...++++.+|..+.+.|+|++|+.+
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFL---AMGKSKAALPDLTKVIAL--KM-DFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--CC-CcchHHHHHHHHHHHcCChHHHHHH
Confidence 3444455555 445567899999999999 677889999999999885 34 4459999999999999999999999
Q ss_pred HHHHHhhCC---CcHHHHHHH
Q 031176 110 LEQCLEIAP---DWRQALGLK 127 (164)
Q Consensus 110 ~~~lL~~eP---~n~Qa~~L~ 127 (164)
+++++++.| ++..+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccChHHHHHHH
Confidence 999999999 777776544
No 104
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=5.6e-06 Score=57.44 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
.++..+|+..++..+....+.+...++++.||..|+++|+|++|+.+++++++++|+|..+....-.+-
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 456778999999988852113466799999999999999999999999999999999987766554443
No 105
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.10 E-value=4.7e-05 Score=60.75 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=73.3
Q ss_pred HHHHHHHHHHH-hcCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176 30 IAGCEREVAEA-NDDKQ--KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS 106 (164)
Q Consensus 30 l~~~e~~y~~~-~~~~~--s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A 106 (164)
...+...|.+. ..++. ...+.++++.++. ..++..+|+..++..+.. +| ...++++.+|..+.++|+|++|
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN---LSGEYDKAVDCFTAALSV--RP-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHcCCHHHH
Confidence 33444445544 33333 6788999999998 567888999999998885 34 4458999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 107 RQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 107 ~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+.++++++++.|++..+....-.+
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999999998765544433
No 106
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=3.3e-05 Score=57.85 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch---------------HHHHHHHHHHHHhhcchHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ---------------REKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~---------------rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
..+..++.|..+. ..++..+|+..++..+.. .|... .++++.+|..|+++|+|++|+.++
T Consensus 37 ~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 37 SAFDIKEEGNEFF---KKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3566778888888 677889999999998874 23222 389999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHH
Q 031176 111 EQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~~~I 130 (164)
+++|+++|++..+.-..-.+
T Consensus 112 ~~al~~~p~~~~~~~~lg~~ 131 (198)
T 2fbn_A 112 SKVLKIDKNNVKALYKLGVA 131 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHH
Confidence 99999999998776554444
No 107
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=1.1e-05 Score=54.44 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
..++.+.+|..+. ..++..+|+..++..+.. +| ...++++.+|..+++.|+|++|..+++.+++..|++
T Consensus 3 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 3 QALKEKELGNDAY---KKKDFDTALKHYDKAKEL--DP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--CC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 4567788888888 567889999999998886 34 345899999999999999999999999999999876
No 108
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.09 E-value=8.2e-06 Score=69.76 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=45.0
Q ss_pred CCCchHHHHHHHHHHHhcCChh-HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 43 DKQKSESIMRLSWALVHSRQAE-DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~-d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
++...++.++.+.++. ..+ +..+|+..++..+.. +| ..-++||+++..+.++|+|++|+.+++++|+++|+|.
T Consensus 127 ~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l--~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEE--QP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp CTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred CccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence 3445566666666666 233 256666666666664 23 3345666666666666666666666666666666665
Q ss_pred HHHHHH
Q 031176 122 QALGLK 127 (164)
Q Consensus 122 Qa~~L~ 127 (164)
.+-.-+
T Consensus 201 ~a~~~l 206 (382)
T 2h6f_A 201 HAWQHR 206 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 109
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=1.3e-05 Score=61.89 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhC-----CCCCCchHHHH----HHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLAN-----SSPPLQQREKL----YLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~-----~~~~~~~rd~l----Y~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
+..|.+.+|. ..+...+|+..++..+.. .-+| +....| |.+++++.++|+|++|+.+++++|+++|+
T Consensus 59 a~~n~g~al~---~Lgr~~eAl~~~~kAL~l~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 59 CHAGLAEALA---GLRSFDEALHSADKALHYFNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHHHhhhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 8889999999 556677788777777762 0034 566899 99999999999999999999999999999
Q ss_pred cH----HHHHHHHHHHhHhhh
Q 031176 120 WR----QALGLKKTVEDRIAK 136 (164)
Q Consensus 120 n~----Qa~~L~~~Ie~~~~~ 136 (164)
+. +-..+++.|+.+..+
T Consensus 135 d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 135 RKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp CCSCCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 85 666777777777655
No 110
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.09 E-value=3.5e-05 Score=60.02 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=65.9
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. ..++.+..+.+++++++. ..++..+|+..++..+.. +| ...++++.+|..+.++|+|++|+++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 193 ANLRRAVELRPDDAQLWNKLGATLA---NGNRPQEALDAYNRALDI--NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334433 345557889999999999 567888999999998886 34 45689999999999999999999999999
Q ss_pred HhhCCC
Q 031176 114 LEIAPD 119 (164)
Q Consensus 114 L~~eP~ 119 (164)
+++.|+
T Consensus 267 ~~~~~~ 272 (327)
T 3cv0_A 267 IYMQVG 272 (327)
T ss_dssp HHHHTT
T ss_pred HHhCCc
Confidence 999999
No 111
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.08 E-value=5.1e-05 Score=59.14 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=44.5
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++....+.+.++.++. ..++..+|++.++..+.. .| ...+.++++|..|.+.|+|++|+.+++++++..|++..
T Consensus 121 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 121 EKTYGPAWIAYGHSFA---VESEHDQAMAAYFTAAQL--MK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp CTTCTHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--TT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 3334556666666666 445556666666665554 12 23355666666666666666666666666666666654
Q ss_pred HH
Q 031176 123 AL 124 (164)
Q Consensus 123 a~ 124 (164)
+.
T Consensus 195 ~~ 196 (330)
T 3hym_B 195 VM 196 (330)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.08 E-value=2.7e-05 Score=58.01 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+++.+.++++.++. ..++..+|++.++..+.. +| ...++++.+|..|+++|+|++|+.+++++++..|+|.
T Consensus 35 ~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 35 PHSRICFNIGCMYT---ILKNMTEAEKAFTRSINR--DK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp CCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred CChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--Cc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 37789999999999 667889999999998886 34 4469999999999999999999999999999999877
No 113
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.07 E-value=2.4e-05 Score=66.82 Aligned_cols=87 Identities=7% Similarity=-0.033 Sum_probs=71.6
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
..++.+.++.+++++++. ..++..+|+..++..+.. +| +.-++|++++.++.++|+|++|+.+++++|+++|+|
T Consensus 160 ~l~P~~~~a~~~~g~~~~---~~g~~~eAl~~~~kal~l--dP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 160 EEQPKNYQVWHHRRVLVE---WLRDPSQELEFIADILNQ--DA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHCTTCHHHHHHHHHHHH---HHTCCTTHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--Cc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 335557889999999998 556778899999998886 34 445899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q 031176 121 RQALGLKKTVEDR 133 (164)
Q Consensus 121 ~Qa~~L~~~Ie~~ 133 (164)
..+-.-+-.+-..
T Consensus 234 ~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 234 NSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9888777666555
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.05 E-value=2.4e-05 Score=62.92 Aligned_cols=79 Identities=10% Similarity=0.027 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+.+..++.|..+. ..++..+|+..++..+.. +| ...++++++|..|+++|+|++|+.+++++++++|+|..+..
T Consensus 3 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (281)
T 2c2l_A 3 SAQELKEQGNRLF---VGRKYPEAAACYGRAITR--NP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76 (281)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5678889999998 667889999999999986 34 45699999999999999999999999999999999987765
Q ss_pred HHHHH
Q 031176 126 LKKTV 130 (164)
Q Consensus 126 L~~~I 130 (164)
..-.+
T Consensus 77 ~lg~~ 81 (281)
T 2c2l_A 77 FLGQC 81 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 115
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.03 E-value=0.0001 Score=60.62 Aligned_cols=81 Identities=9% Similarity=0.072 Sum_probs=63.7
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. ..++.+..+.+.++.++. ..++..+|+..++..+.. +| ...++++.+|..|.++|+|++|+++++++
T Consensus 47 ~~~~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 47 SQFHAAVDGDPDNYIAYYRRATVFL---AMGKSKAALPDLTKVIQL--KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhc--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333 334557888888888888 556788899999988885 34 44688999999999999999999999999
Q ss_pred HhhCCCcH
Q 031176 114 LEIAPDWR 121 (164)
Q Consensus 114 L~~eP~n~ 121 (164)
+++.|++.
T Consensus 121 ~~~~~~~~ 128 (450)
T 2y4t_A 121 LKSNPSEN 128 (450)
T ss_dssp HTSCCCHH
T ss_pred HhcCCCCh
Confidence 99999887
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.02 E-value=3.3e-05 Score=63.90 Aligned_cols=80 Identities=8% Similarity=0.080 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch--------------HHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ--------------REKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~--------------rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
...+.++++..+. ..++..+|+..++..+.. .|... ..++++||..|.++|+|++|+.+++
T Consensus 146 ~a~~~~~~g~~~~---~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 146 QSTIVKERGTVYF---KEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5678889999998 678899999999998885 34332 5899999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHH
Q 031176 112 QCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~~I 130 (164)
++|+++|+|..+.-.+-.+
T Consensus 221 ~al~~~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEA 239 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHH
Confidence 9999999998766544433
No 117
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.02 E-value=5.1e-05 Score=61.76 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=67.7
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.+...|.+. ..++.+..+.++++.++. ..++..+|++.++..+.. +| ...+.++.++..+.+.|+|++|+.++
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYY---EQGLIDLAIDTYRRAIEL--QP-HFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHT--CS-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344455555 334556788888888888 566778888998888875 34 44588889999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHH
Q 031176 111 EQCLEIAPDWRQALGLK 127 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~ 127 (164)
++++++.|++..+....
T Consensus 295 ~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHhhCcccHHHHHHH
Confidence 99999999887665433
No 118
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.02 E-value=5.4e-05 Score=62.84 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
..+.+++++++.+....++..+|++.++..+.. +| ...++++.+|..+.+.|+|++|+.++++++++.|++.++...
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--Cc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 348899999998211178899999999998886 34 446899999999999999999999999999999999988877
Q ss_pred HHHHHh
Q 031176 127 KKTVED 132 (164)
Q Consensus 127 ~~~Ie~ 132 (164)
....+.
T Consensus 489 ~~~~~~ 494 (514)
T 2gw1_A 489 ITFAEA 494 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.00 E-value=4.9e-05 Score=60.61 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=66.8
Q ss_pred HHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 35 REVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 35 ~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..|.+. ..++.++.+.++++.++. ..++..+|++.++..+.. +| ...++++.+|..|.++|+|++|+.+++++
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLA---NGNQSEEAVAAYRRALEL--QP-GYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333333 335557889999999999 567889999999998886 34 44599999999999999999999999999
Q ss_pred HhhCCCc
Q 031176 114 LEIAPDW 120 (164)
Q Consensus 114 L~~eP~n 120 (164)
+++.|++
T Consensus 312 l~~~~~~ 318 (368)
T 1fch_A 312 LNMQRKS 318 (368)
T ss_dssp HHHHHTC
T ss_pred HHhCCCC
Confidence 9999998
No 120
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.00 E-value=5.2e-05 Score=59.05 Aligned_cols=74 Identities=4% Similarity=-0.037 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
++.+.+.++..+.+.. .+..+|++.++..+.. +| ...++++.+|..+.+.|+|++|+.+++++++..|++..+.
T Consensus 89 ~~~~~~~l~~~~~~~~--~~~~~A~~~~~~a~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 162 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVG--HKNEHARRYLSKATTL--EK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162 (330)
T ss_dssp STHHHHHHHHHHHHSC--SCHHHHHHHHHHHHTT--CT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred CHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence 4444455554444221 1344455555554443 12 2234555555555555555555555555555555544443
No 121
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.98 E-value=3.4e-05 Score=62.15 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+.+..|+.|..+. ..++..+|+++++..+.. +| ...++++.++..|+++|+|++|+.+++++++++|++..+..
T Consensus 64 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 137 (365)
T 4eqf_A 64 DWPGAFEEGLKRL---KEGDLPVTILFMEAAILQ--DP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM 137 (365)
T ss_dssp TCTTHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chhHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--Cc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4567899999999 667888999999998885 34 44689999999999999999999999999999999876544
Q ss_pred HH
Q 031176 126 LK 127 (164)
Q Consensus 126 L~ 127 (164)
..
T Consensus 138 ~l 139 (365)
T 4eqf_A 138 AL 139 (365)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 122
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.97 E-value=4.6e-05 Score=69.08 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=69.7
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 43 DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++.+.++.+++|.++. ..++..+|++.++..+.. +| +..+++|++|..++++|+|++|+.+++++|+++|++..
T Consensus 429 ~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 502 (681)
T 2pzi_A 429 FSESVELPLMEVRALL---DLGDVAKATRKLDDLAER--VG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA 502 (681)
T ss_dssp CTTCSHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred cccchhHHHHHHHHHH---hcCCHHHHHHHHHHHhcc--Cc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 3557899999999999 678899999999999985 34 44699999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 031176 123 ALGLKKT 129 (164)
Q Consensus 123 a~~L~~~ 129 (164)
+....-.
T Consensus 503 ~~~~lg~ 509 (681)
T 2pzi_A 503 PKLALAA 509 (681)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7654433
No 123
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.95 E-value=8.3e-05 Score=63.55 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
..+.+.+++++. ..++.++|++.++..+.. +| ...+.++.|+.+|.+.|++++|+++++++++++|+|..+..+
T Consensus 516 ~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 516 AATWANLGHAYR---KLKMYDAAIDALNQGLLL--ST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--SS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHH---HhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 678999999999 567889999999998886 34 345999999999999999999999999999999999988776
Q ss_pred HHH
Q 031176 127 KKT 129 (164)
Q Consensus 127 ~~~ 129 (164)
...
T Consensus 590 l~~ 592 (597)
T 2xpi_A 590 LKR 592 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 124
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.93 E-value=8.2e-05 Score=64.30 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=52.1
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDV-QRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~-~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
...+......+++|.++. ..++. .+|++.++..+.. +| ...++++.||..|+++|+|++|+.+++++|+++|+
T Consensus 96 ~~~~~~a~~~~~lg~~~~---~~g~~~~~A~~~~~~al~~--~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALN---VTPDYSPEAEVLLSKAVKL--EP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp TTCCCCHHHHHHHHHHHT---SSSSCCHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred ccCchhHHHHHHHHHHHH---hccccHHHHHHHHHHHHhh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 334456777777777777 45566 7777877777775 23 34477788888888888888888888888888777
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.90 E-value=0.00029 Score=56.55 Aligned_cols=91 Identities=19% Similarity=0.136 Sum_probs=63.2
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHH-------------------------------HHHHHHHHHHhhCCC
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDV-------------------------------QRGIAMLEASLANSS 81 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~-------------------------------~~gi~lLe~ll~~~~ 81 (164)
+..|.+. ..++.++++.+++|.+++...+.++- ..+++.|+..+..
T Consensus 137 ~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-- 214 (287)
T 3qou_A 137 LPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-- 214 (287)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--
Confidence 4455555 45666789999999998854432211 1134444454553
Q ss_pred CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc--HHHHHHH
Q 031176 82 PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW--RQALGLK 127 (164)
Q Consensus 82 ~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n--~Qa~~L~ 127 (164)
+| +..+.+|.||..+...|+|++|+..++++|+.+|++ .++....
T Consensus 215 ~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 215 NP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred CC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 34 455899999999999999999999999999999998 4444433
No 126
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=4.7e-05 Score=65.75 Aligned_cols=80 Identities=10% Similarity=0.126 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch--------------HHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ--------------REKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~--------------rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
.....+++++.+. ..+++.+|+..++..+.. +|... ..+++++|.+|+++++|++|+.+++
T Consensus 267 ~a~~~~~~G~~~~---~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 267 QAAIVKEKGTVYF---KGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3567888899998 577899999999998884 24332 5899999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHH
Q 031176 112 QCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 112 ~lL~~eP~n~Qa~~L~~~I 130 (164)
++|+++|+|..+.-.+-.+
T Consensus 342 ~al~~~p~~~~a~~~~g~a 360 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEA 360 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHH
Confidence 9999999998775544333
No 127
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.87 E-value=0.00019 Score=61.25 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=69.2
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN----SSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~----~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
.+.|.+. ...+.++.+.+.+++.+. ..++.++|++++++.+.. ..+|....+.++.++.+|++.|+|++|++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAF---NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4444444 334457788888899888 456778888888887664 12343346889999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHH
Q 031176 109 ILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+++++++++|+|..+....-.+
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999988665554444
No 128
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=5.9e-05 Score=63.80 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-------------CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-------------SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-------------~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
.+..++.|..+. ..++..+|++.++..+... ...+....+++++|..|+++++|++|+.+++++
T Consensus 223 a~~~~~~g~~~~---~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 223 SEDLKNIGNTFF---KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 355777788888 5667788888888877610 012355689999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHh
Q 031176 114 LEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~Ie~ 132 (164)
|+++|+|.++.-.+-.+-.
T Consensus 300 l~~~p~~~~a~~~lg~~~~ 318 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQ 318 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHH
Confidence 9999999887665555443
No 129
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.86 E-value=8.1e-06 Score=60.41 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGL 126 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L 126 (164)
.+..+..|..++ ..++..+++..++..+.. +| +..+.++.+|..+.+.|+|++|+.+++++++.+| +..+..+
T Consensus 6 ~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~ 78 (176)
T 2r5s_A 6 DEQLLKQVSELL---QQGEHAQALNVIQTLSDE--LQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSL 78 (176)
T ss_dssp CTTHHHHHHHHH---HTTCHHHHHHHHHTSCHH--HH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH--CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHH
Confidence 466788888888 556677888888887774 23 4458888888888888888888888888888888 7766555
Q ss_pred HH
Q 031176 127 KK 128 (164)
Q Consensus 127 ~~ 128 (164)
..
T Consensus 79 ~~ 80 (176)
T 2r5s_A 79 IA 80 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 130
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.82 E-value=5.1e-05 Score=58.62 Aligned_cols=73 Identities=8% Similarity=-0.037 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc------hHH-----HHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ------QRE-----KLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~------~rd-----~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
....++.+..+. ..+++++|++..+..+.- +|.. ..+ ||+++|.++.++|+|++|+.+++++|+
T Consensus 11 a~~~~~~G~~l~---~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 11 AYLALSDAQRQL---VAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455677788887 677889999999998885 3431 223 999999999999999999999999999
Q ss_pred h-------CCCcHHHH
Q 031176 116 I-------APDWRQAL 124 (164)
Q Consensus 116 ~-------eP~n~Qa~ 124 (164)
+ +|++..+-
T Consensus 86 l~n~~~e~~pd~~~A~ 101 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLW 101 (159)
T ss_dssp HHHHHCCTTSTHHHHH
T ss_pred hhhccccCCCchHHHH
Confidence 9 99987765
No 131
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=0.00014 Score=49.73 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 68 RGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 68 ~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
.+++.++..+.. +| ...+.++.+|..+++.|+|++|+.+++++++++|++..+....-.+
T Consensus 3 ~a~~~~~~al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 62 (115)
T 2kat_A 3 AITERLEAMLAQ--GT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62 (115)
T ss_dssp CHHHHHHHHHTT--TC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 467888888885 34 4458999999999999999999999999999999998766544433
No 132
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.80 E-value=0.00018 Score=60.26 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
.++.+.+.++.++. ..++..+|++.++..+.. +| ...+.++.+|..+++.|+|++|+.+++++++..|++..+.
T Consensus 308 ~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 381 (537)
T 3fp2_A 308 EYPPTYYHRGQMYF---ILQDYKNAKEDFQKAQSL--NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381 (537)
T ss_dssp TCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 34555666666665 344555666666665553 22 2235666666666666666666666666666666665443
Q ss_pred HH
Q 031176 125 GL 126 (164)
Q Consensus 125 ~L 126 (164)
..
T Consensus 382 ~~ 383 (537)
T 3fp2_A 382 TF 383 (537)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 133
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.79 E-value=5.2e-05 Score=63.62 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
..+..++.|..+. ..++..+|++.++..+.. +| ...++++.+|..|+++|+|++|+++++++++++|+|..+..
T Consensus 24 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 97 (537)
T 3fp2_A 24 YAVQLKNRGNHFF---TAKNFNEAIKYYQYAIEL--DP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHH---HTTCCC-CHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHH---HhccHHHHHHHHHHHHhh--CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHH
Confidence 4556666777777 455566777777776664 23 33477777777777777777777777777777777766554
Q ss_pred HHHHH
Q 031176 126 LKKTV 130 (164)
Q Consensus 126 L~~~I 130 (164)
..-.+
T Consensus 98 ~la~~ 102 (537)
T 3fp2_A 98 RRASA 102 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 134
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=7.3e-05 Score=61.94 Aligned_cols=79 Identities=11% Similarity=0.009 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch----------------HHHHHHHHHHHHhhcchHHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ----------------REKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~----------------rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
....++.++.+. ..++..+|+..++..+.. .|... ..+++++|.+|+++++|++|+.++
T Consensus 179 a~~~~~~g~~~~---~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 179 ADRRKMDGNSLF---KEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHTC---SSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455667777777 566778888888887764 23222 149999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHH
Q 031176 111 EQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 111 ~~lL~~eP~n~Qa~~L~~~I 130 (164)
+++|+++|+|..+.-.+-.+
T Consensus 254 ~~al~~~p~~~~a~~~lg~a 273 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKA 273 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 99999999998776544433
No 135
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.71 E-value=0.00033 Score=51.58 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=42.6
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 69 GIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 69 gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
++..++..+.. +| +..+.+|.||..+.+.|+|++|+.+++++|+.+|++..
T Consensus 93 a~~~~~~al~~--~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 93 ELKRLEQELAA--NP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHHHHHHHHH--ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred HHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 57777777775 34 44599999999999999999999999999999998643
No 136
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.67 E-value=0.00024 Score=53.69 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHH-h-cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhc
Q 031176 29 IIAGCEREVAEA-N-DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTG 101 (164)
Q Consensus 29 ~l~~~e~~y~~~-~-~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~ 101 (164)
...++-+.+.+. . ..+....+.+++|+++. ..++..+|+..++..+... .+++..-.+++.+|..|+.+|
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYR---DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 334444444443 2 22346788999999999 5667778888888876531 234566789999999999999
Q ss_pred chHHHHHHHHHHHhh
Q 031176 102 EYAKSRQILEQCLEI 116 (164)
Q Consensus 102 ~Y~~A~~~~~~lL~~ 116 (164)
+|++|+.++++++++
T Consensus 100 ~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 100 KYKEAEPLCKRALEI 114 (283)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999999998
No 137
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00021 Score=59.22 Aligned_cols=84 Identities=15% Similarity=0.013 Sum_probs=68.4
Q ss_pred HHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHH
Q 031176 32 GCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQIL 110 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~ 110 (164)
.+.+.|.+. ..+ +++.+.+++|.+++ ..++..+|++.++..+.. +| ...++++.+|.+++++|+|++|+.++
T Consensus 24 ~A~~~~~~al~~~-p~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 24 DAIKYYNWALELK-EDPVFYSNLSACYV---SVGDLKKVVEMSTKALEL--KP-DYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccHHHHHhHHHHHH---HHhhHHHHHHHHHHHhcc--Ch-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444555555 223 46889999999999 677899999999998886 34 44599999999999999999999999
Q ss_pred HHHHhhCCCcHH
Q 031176 111 EQCLEIAPDWRQ 122 (164)
Q Consensus 111 ~~lL~~eP~n~Q 122 (164)
+++++..|.+..
T Consensus 97 ~~~~~~~~~~~~ 108 (514)
T 2gw1_A 97 SVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHSSSCCGG
T ss_pred HHHHhcCCCccc
Confidence 999999997654
No 138
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.65 E-value=0.00012 Score=66.46 Aligned_cols=89 Identities=10% Similarity=-0.016 Sum_probs=67.5
Q ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 34 EREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 34 e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
...|.+. ..++.+.++.++++.++. ..++..+|++.++..+.. +| +.-+++++||..+.++|+|++ +.++++
T Consensus 453 ~~~~~~al~~~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l--~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 453 TRKLDDLAERVGWRWRLVWYRAVAEL---LTGDYDSATKHFTEVLDT--FP-GELAPKLALAATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--ST-TCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 3334444 345567889999999998 677888999999998885 34 345888888888888888888 888888
Q ss_pred HHhhCCCcHHHHHHHHH
Q 031176 113 CLEIAPDWRQALGLKKT 129 (164)
Q Consensus 113 lL~~eP~n~Qa~~L~~~ 129 (164)
+|+++|++..+..-+-.
T Consensus 526 al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 526 VWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHCTTCHHHHHHHHH
T ss_pred HHHhCCchHHHHHHHHH
Confidence 88888888776544333
No 139
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.62 E-value=0.00053 Score=56.89 Aligned_cols=89 Identities=9% Similarity=0.075 Sum_probs=65.9
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHH-HHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLA-VGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LA-lg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
..++....+.+++|.... ..++.++|++.++..+....++......++.++ +..+.+|+|++|+.+++++|++.|+
T Consensus 328 ~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 328 EANDNLFRVCSILASLHA---LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHCTTTCCCHHHHHHHHH---HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred hcCCchhhhhhhHHHHHH---HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 335557788899999988 667888999999999986322222233444444 6678999999999999999999999
Q ss_pred cHHHHHHHHHHHh
Q 031176 120 WRQALGLKKTVED 132 (164)
Q Consensus 120 n~Qa~~L~~~Ie~ 132 (164)
+..........++
T Consensus 405 ~~~~~~~~~~l~~ 417 (472)
T 4g1t_A 405 SREKEKMKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9876655544443
No 140
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00021 Score=48.51 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~ 133 (164)
+..+.+|.||..++++|+|++|+.+++++++++|++..+....-.+-..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 53 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER 53 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4458999999999999999999999999999999999877666555443
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.51 E-value=0.0007 Score=51.07 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
...+.+++|.++. ..++..+|++.++..+... .+.+....+++.+|..++++|+|++|+.++++++++
T Consensus 84 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 84 VAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678889999998 6677888888888876531 123466789999999999999999999999999999
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.50 E-value=0.00021 Score=57.43 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=63.0
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+.+.+..+..|..+. ..++..+|+..++..+.. +| +..+.++.||..+.+.|++++|+.+++++++.+|++.
T Consensus 114 p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~--~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLM---QESNYTDALPLLXDAWQL--SN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred CCchhhHHHHHHHHH---hCCCHHHHHHHHHHHHHh--CC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 346788999999999 677889999999999986 45 4459999999999999999999999999999999654
No 143
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.49 E-value=0.00089 Score=53.66 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=70.4
Q ss_pred HHHHHHHHHH-hcCCCchHHHHHHHHHHHhcC----ChhH-------HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSESIMRLSWALVHSR----QAED-------VQRGIAMLEASLANSSPPLQQREKLYLLAVGYY 98 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~----~~~d-------~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~ 98 (164)
.++...|++. ...+.+++..++|+..+..+. ..++ ..+++..++..+.. -+| +..+.|+.++..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHH
Confidence 5666778877 556668899999998887431 1223 48899999998882 123 55688999999999
Q ss_pred hhcchHHHHHHHHHHHhhCCCcHH
Q 031176 99 RTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 99 kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+.|++++|+..++++|++.|++..
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~ 134 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPT 134 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTH
T ss_pred hcCCHHHHHHHHHHHHhccccCcc
Confidence 999999999999999999998865
No 144
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.48 E-value=5.5e-05 Score=65.96 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
+.+++|..+. ..++..+|++.+++.+.. +| ...++++++|..|+++|+|++|+.+++++|+++|++.++...+-
T Consensus 8 ~~~~lg~~~~---~~g~~~~A~~~~~~Al~~--~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 8 ELKTQANDYF---KAKDYENAIKFYSQAIEL--NP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp TSSSSSSSTT---TTTCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCHHHHHHHHHHHHHh--CC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3344455555 677899999999999986 34 44699999999999999999999999999999999987655444
Q ss_pred HH
Q 031176 129 TV 130 (164)
Q Consensus 129 ~I 130 (164)
.+
T Consensus 82 ~~ 83 (477)
T 1wao_1 82 AS 83 (477)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 145
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.48 E-value=0.00031 Score=56.21 Aligned_cols=74 Identities=4% Similarity=0.038 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC----chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL----QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~----~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
..+..+++..+. ..++..+|++.++..+....+.. ...++++.++++|.++|+|++|+.+++++++++|++..
T Consensus 158 ~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 158 NKCFIKCADLKA---LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 456788899998 56788999999999988522111 12357899999999999999999999999999999765
Q ss_pred H
Q 031176 123 A 123 (164)
Q Consensus 123 a 123 (164)
.
T Consensus 235 ~ 235 (292)
T 1qqe_A 235 S 235 (292)
T ss_dssp -
T ss_pred c
Confidence 4
No 146
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.42 E-value=0.00058 Score=43.65 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 83 PLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 83 ~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
|+...+.++.+|..+++.|+|++|+.+++++++.+|++.++....-.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 52 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 52 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 555678999999999999999999999999999999998765544433
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.37 E-value=0.0012 Score=54.98 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
++.|.++.++. ..++..+|+..|++.+....+|....|.+|++++++.++|+.++|+..+++++..+|+ .++..
T Consensus 172 ~a~~~LG~al~---~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 172 AAGVAHGVAAA---NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 46666677766 5566677777777766431114335577777777777777777777777777777777 55443
No 148
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.36 E-value=0.0019 Score=49.28 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHH
Q 031176 31 AGCEREVAEANDDKQKSESIMRLSWALVHSRQ-AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAK 105 (164)
Q Consensus 31 ~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~-~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~ 105 (164)
.+..+-|++.. +...+.+.++++..+..... +.+..+|++.++..+.. +++....+++|.|+..|.+ .+|+++
T Consensus 70 ~~A~~~~~~A~-~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 70 PQARQLAEKAV-EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33444444441 12367889999998884222 67889999999998875 2211346899999999999 889999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHH
Q 031176 106 SRQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 106 A~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
|+.+++++++. |++..+..-.
T Consensus 148 A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 148 ASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHH
Confidence 99999999998 6666654433
No 149
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.0019 Score=53.55 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 44 KQKSESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+..+.+..++++.+..- ...++..+++..++..+.. +| ...+.++++|..|.+.|+|++|..++++++++.|++..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--AP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--Cc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 34556666666665543 2345677899999988875 34 45689999999999999999999999999999999987
Q ss_pred HHH
Q 031176 123 ALG 125 (164)
Q Consensus 123 a~~ 125 (164)
+..
T Consensus 283 ~~~ 285 (472)
T 4g1t_A 283 LHC 285 (472)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 150
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.30 E-value=0.0016 Score=50.00 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
...+.+++++++. ..++..+|++.++..+... .+++....+++.+|..+++.|+|++|+.++++++++
T Consensus 110 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 110 VAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678888899988 6677888888888877641 234566788999999999999999999999999998
No 151
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.29 E-value=0.002 Score=51.54 Aligned_cols=86 Identities=10% Similarity=-0.072 Sum_probs=50.0
Q ss_pred HHHHHHHHH-h-cCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHH
Q 031176 32 GCEREVAEA-N-DDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQI 109 (164)
Q Consensus 32 ~~e~~y~~~-~-~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~ 109 (164)
.+...|.+. . -++.+....++|+..+. ..++..+++++++..+.. +|.+....|+.++..+.+.|++++|+.+
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEE---SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 344445554 3 24445566666666666 344566667777666664 2322222666666666667777777777
Q ss_pred HHHHHhhCCCcHH
Q 031176 110 LEQCLEIAPDWRQ 122 (164)
Q Consensus 110 ~~~lL~~eP~n~Q 122 (164)
++++++..|.+.+
T Consensus 157 ~~~a~~~~p~~~~ 169 (308)
T 2ond_A 157 FKKAREDARTRHH 169 (308)
T ss_dssp HHHHHTSTTCCTH
T ss_pred HHHHHhcCCCCHH
Confidence 7777776666543
No 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.27 E-value=0.002 Score=52.68 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh-----CCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLA-----NSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~-----~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
...+.+++|++.. ..++..+|++.+++.+. . +|.. ..+++.||..|+++|+|++|+.++++++++.+.
T Consensus 221 ~~~~~~~lg~~y~---~~~~~~~A~~~~~~al~~~~~~~--~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 221 IAISLLNIANSYD---RSGDDQMAVEHFQKAAKVSREKV--PDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHC--GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhhC--ChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3567889999998 67788899999998887 4 3434 799999999999999999999999999999654
No 153
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.24 E-value=0.00052 Score=53.22 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhCC
Q 031176 46 KSESIMRLSWALVHSR-QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~-~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~eP 118 (164)
++.+.++++..+.... ..++..+|++.++..+.. + ..++++.|+..|.+ .++|++|+.+++++++..|
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 5667777777776421 155677777777776664 1 24777777777777 7777777777777777766
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.24 E-value=0.0016 Score=51.63 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHh---hCCCCCCchH-HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASL---ANSSPPLQQR-EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll---~~~~~~~~~r-d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
..+.+++++.+. ..++..+|++.++..+ ....+..... .+++++|..|+++|+|++|+.+++++|++.|+
T Consensus 155 ~~~~~~lg~~y~---~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 155 LYIENAIANIYA---ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 457788888888 6778889999998877 3311121222 69999999999999999999999999988643
No 155
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.23 E-value=0.002 Score=49.45 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=57.5
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
....+.+.++..+. ..++..+|+.+++..+... .+++....+++.+|..|++.|+|++|+.++++++++.
T Consensus 25 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYA---SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35688889999998 5667888888888877620 0245677999999999999999999999999999984
No 156
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.19 E-value=0.0024 Score=43.70 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
..+.+++|+++. ..++..+|++.++..+.. .+++...-.+++.+|..|+++|+|++|++++++++++-+.
T Consensus 89 ~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYT---LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 556777888888 455666777777765542 1333445678888999999999999999999998887654
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.14 E-value=0.0037 Score=45.41 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=58.5
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh---CC
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLA---NSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI---AP 118 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~---~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~---eP 118 (164)
....+.+.+++.+. ..++..+|+..+++.+. ..+++...-.+++.+|..|..+|+|++|+.++++++++ .|
T Consensus 24 ~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 100 (203)
T 3gw4_A 24 TASGARFMLGYVYA---FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100 (203)
T ss_dssp THHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 46788888999998 45677788888877665 22335566789999999999999999999999999999 55
Q ss_pred Cc
Q 031176 119 DW 120 (164)
Q Consensus 119 ~n 120 (164)
++
T Consensus 101 ~~ 102 (203)
T 3gw4_A 101 ED 102 (203)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 158
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.0018 Score=56.59 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh----
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI---- 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~---- 116 (164)
...+.-++|..+. +.+++++|+.+++..+... .+.++.--.+++||..|..+|+|++|..+++++|++
T Consensus 339 ~a~~~~nLa~~y~---~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 339 MLHMMYQAMGVCL---YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 4567778888887 6778888888887766421 223455677899999999999999999999999986
Q ss_pred -CCCcHHHHHHHHHHHh
Q 031176 117 -APDWRQALGLKKTVED 132 (164)
Q Consensus 117 -eP~n~Qa~~L~~~Ie~ 132 (164)
-|+++..+.|++.+++
T Consensus 416 lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 416 HGKDHPYISEIKQEIES 432 (433)
T ss_dssp TCTTCHHHHHHHHHHHC
T ss_pred cCCCChHHHHHHHHHhc
Confidence 6999999999987764
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0017 Score=42.78 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
-+.++.+|..+++.|+|++|..+++++++++|++..+....-
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 45 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKA 45 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 478999999999999999999999999999999987654433
No 160
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.07 E-value=0.0022 Score=51.54 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH--
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR-- 121 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~-- 121 (164)
..+.++++..+. ..++..+|++.++..+... ..+.....+++.++..|..+|+|++|+.+++++| ++|++.
T Consensus 155 ~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 155 AELIGKASRLLV---RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence 577888899988 5678889999998877631 1111223467777888888899999999999999 999654
Q ss_pred -HHHHHHHHH
Q 031176 122 -QALGLKKTV 130 (164)
Q Consensus 122 -Qa~~L~~~I 130 (164)
++..+...+
T Consensus 231 ~e~~~l~~l~ 240 (307)
T 2ifu_A 231 EDCAALEDLL 240 (307)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 444444444
No 161
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.05 E-value=0.0015 Score=51.80 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLAN----SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~----~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+..+++.+.. ..++..+|++.++..+.. ..++...-.++|++|..|+++|+|++|+.+++++|++.|.+
T Consensus 157 ~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 157 IENAIANIYA---ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 5677777777 566788999999887731 01234455689999999999999999999999999987654
No 162
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.01 E-value=0.016 Score=44.07 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHH-hcCC--CchHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc---
Q 031176 29 IIAGCEREVAEA-NDDK--QKSESIMRLSWALVHSRQ-AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG--- 101 (164)
Q Consensus 29 ~l~~~e~~y~~~-~~~~--~s~~~~F~yA~aLi~S~~-~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~--- 101 (164)
+..+...-|.+. ..++ ..+.+.++++..+..... +.+..+|++.++..+.. + ...+++|.|+..|.+..
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~-~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---S-RTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---S-CTTHHHHHHHHHHHHCBTTT
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---C-CCHHHHHHHHHHHHcCCCCC
Confidence 445556666666 3333 238999999999996433 77899999999998885 1 22469999999998753
Q ss_pred ---chHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 031176 102 ---EYAKSRQILEQCLEIAPDWRQALGLKKTVE 131 (164)
Q Consensus 102 ---~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie 131 (164)
|+++|+.+++++.+. .+..+......++
T Consensus 180 ~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~ 210 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLE--GFDTGCEEFDRIS 210 (212)
T ss_dssp BCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence 999999999999987 4666666665554
No 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.97 E-value=0.0036 Score=51.05 Aligned_cols=70 Identities=10% Similarity=0.188 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
..+.+++|+++. ..++..+|++.++..+.. ..+++....+++.||..|+++|+|++|..++++++++.|.
T Consensus 224 ~~~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 224 GRTLYNIGLCKN---SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 468889999998 667888999999887771 0132456789999999999999999999999999998543
No 164
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.97 E-value=0.0027 Score=54.05 Aligned_cols=91 Identities=11% Similarity=0.065 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcch
Q 031176 29 IIAGCEREVAEANDDKQKSESIMRLSWALVHSR-QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEY 103 (164)
Q Consensus 29 ~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~-~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y 103 (164)
+.....+-|.+.... .++++.+++++.+.... ...+..+|++.++..+.. + ..+++|.|+..|++ .+|+
T Consensus 346 ~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~----~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G----LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C----CHHHHHHHHHHHHcCCCCCCCH
Confidence 444444444444111 35677777777777421 146777788887777664 2 24778888888887 7888
Q ss_pred HHHHHHHHHHHhhCCC---cHHHHH
Q 031176 104 AKSRQILEQCLEIAPD---WRQALG 125 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~---n~Qa~~ 125 (164)
++|..+++++++..|+ |..+..
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 8888888888888844 665544
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.94 E-value=0.0017 Score=51.44 Aligned_cols=84 Identities=6% Similarity=-0.035 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHH-HHHHHHHHhhCCCcHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKS-RQILEQCLEIAPDWRQA 123 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A-~~~~~~lL~~eP~n~Qa 123 (164)
.+.+++|+++. ..++..+|++.++..+.. ..++...-.++|++|..|.++|+|++| ..++++++.+..... -
T Consensus 197 ~~~~nlg~~y~---~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~-~ 272 (293)
T 2qfc_A 197 KVRYNHAKALY---LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE-M 272 (293)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHhHHHHHH---HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC-c
Confidence 68899999999 777888999999887653 123334578999999999999999999 888998886642211 1
Q ss_pred HHHHHHHHhHhh
Q 031176 124 LGLKKTVEDRIA 135 (164)
Q Consensus 124 ~~L~~~Ie~~~~ 135 (164)
..+.+.|+..+.
T Consensus 273 ~~~~~~~~~~~~ 284 (293)
T 2qfc_A 273 HAYKEALVNKIS 284 (293)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhHHHHHHHHH
Confidence 223555555444
No 166
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.94 E-value=0.0058 Score=47.17 Aligned_cols=81 Identities=9% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhCC
Q 031176 44 KQKSESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~eP 118 (164)
..++++.++++..+... ...++..+|++.++..+.. + ..+++|+|+..|.+ .++|++|+.+++++++..
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 108 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK- 108 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence 45778888888888831 1156778888888888875 1 35888889998888 899999999988888873
Q ss_pred CcHHHHHHHHHHH
Q 031176 119 DWRQALGLKKTVE 131 (164)
Q Consensus 119 ~n~Qa~~L~~~Ie 131 (164)
+..+....-.+-
T Consensus 109 -~~~a~~~lg~~~ 120 (273)
T 1ouv_A 109 -YAEGCASLGGIY 120 (273)
T ss_dssp -CHHHHHHHHHHH
T ss_pred -CccHHHHHHHHH
Confidence 555554444443
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.93 E-value=0.0022 Score=50.82 Aligned_cols=68 Identities=7% Similarity=-0.047 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIA 117 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~e 117 (164)
..+.+++++++. ..++..+|++.++..+.. .++....-++++++|..|+++| +|++|+++++++|++-
T Consensus 196 ~~~~~nlg~~y~---~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 196 VKVRYNHAKALY---LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 467899999999 667888999988877652 1334455799999999999999 5799999999999764
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.92 E-value=0.0076 Score=41.13 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
..+.+++++.+. ..++..+|++.++..+.. ..++.....+++++|..++.+|+|++|..++++++++.+.
T Consensus 49 ~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 49 RIAYSNLGNAYI---FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 357888899998 556777888888876552 1333445678999999999999999999999999987543
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.91 E-value=0.0029 Score=46.00 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CC-CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SS-PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~-~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP 118 (164)
...+.+++++.+. ..++..+|++.+++.+.. .+ ++...-.+++.+|..+..+|+|++|+.++++++++.+
T Consensus 65 ~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 65 EHRALHQVGMVER---MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4677888888888 455677777777775552 22 2224567899999999999999999999999997743
No 170
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.84 E-value=0.0037 Score=45.08 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=51.9
Q ss_pred CchHHHHHHHHHHHhc-CChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhC
Q 031176 45 QKSESIMRLSWALVHS-RQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S-~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~e 117 (164)
.++.+.++++..+.+. ..+.|..+|++.++..... + ..++.|+|+..|.+ .+|+++|+++++++.+..
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 3678888888888742 1266888888888887775 2 24788888888888 888888888888888774
No 171
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.83 E-value=0.0027 Score=50.62 Aligned_cols=73 Identities=14% Similarity=0.041 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH
Q 031176 47 SESIMRLSWALVHSRQA-EDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~-~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
..+..+++..+. .. ++..+|++.+++.+... +++....++++.++..+.++|+|++|+.++++++++.|++..
T Consensus 117 a~~~~~lg~~~~---~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 117 ANFKFELGEILE---NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHH---HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 346667777766 33 67888888888877631 111122578999999999999999999999999999999764
No 172
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.80 E-value=0.0094 Score=52.76 Aligned_cols=86 Identities=8% Similarity=0.003 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh----
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI---- 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~---- 116 (164)
...+.-++|..+. +.+++.+|+.+++..+... .+.+..-..+++||..|..+|+|++|..+++++|++
T Consensus 350 ~a~~~~nLa~~y~---~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 350 VLRLLSIASEVLS---YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4677888888888 6677888888777765421 223355678899999999999999999999999974
Q ss_pred -CCCcHHHHHHHHHHHhHh
Q 031176 117 -APDWRQALGLKKTVEDRI 134 (164)
Q Consensus 117 -eP~n~Qa~~L~~~Ie~~~ 134 (164)
-|+++...+++..+....
T Consensus 427 lG~~Hp~~~~~~~~l~~~~ 445 (490)
T 3n71_A 427 HGPSHPITKDLEAMRMQTE 445 (490)
T ss_dssp TCTTSHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHH
Confidence 799999998887776544
No 173
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.76 E-value=0.0031 Score=48.28 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
..+.+++|..+. ..++..+|+..++..+... .++.....+++.||..|.++|+|++|+.++++++++.|+
T Consensus 263 ~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 263 AQSCYSLGNTYT---LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 455566666666 3445566666666554420 122233456777777777777777777777777777664
No 174
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.74 E-value=0.0034 Score=48.06 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
.+.+.+++.+. ..++..++++.++..+.. .++++....+++.+|..|+.+|+|++|+.++++++++.|...
T Consensus 44 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 44 AIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 56677788777 455677888888776542 133445567888888888888888888888888888877543
No 175
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.72 E-value=0.0056 Score=48.79 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.+.+.++.++. ..++..+|+..++..+.. .++++...++++.+|..|+.+|+|++|+.++++++++.|..
T Consensus 48 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 48 AIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 45666777776 455666777777765432 23334455677777778888888888888888887777654
No 176
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.72 E-value=0.0032 Score=51.03 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
+.+.++.++. ..++..+|++.++..+.. ..++.....+++.+|..|+.+|+|++|+.++++++++
T Consensus 88 ~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 88 IYSQLGNAYF---YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444444444 334444444444443331 1112233344555555555555555555555555554
No 177
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.69 E-value=0.0096 Score=48.13 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=58.4
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQ---REKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~---rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.......+..+..+. ..++..+|+..++..+.. +|.+. ..+++.+|..|+.+|+|++|+.++++++++
T Consensus 45 ~~~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 45 SSMCLELALEGERLC---NAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346778889999999 667889999999998885 34443 499999999999999999999999999998
No 178
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.012 Score=51.09 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=67.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh----
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI---- 116 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~---- 116 (164)
...+.-++|..+. +.++.++|+.+.+..+... .+.+..--.++.||..|..+|+|++|+.+++++|++
T Consensus 328 ~~~~~~~L~~~y~---~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 328 QLKVLDCAMDACI---NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 4567778888877 6778888888888766421 223355677899999999999999999999999975
Q ss_pred -CCCcHHHHHHHHHHHhH
Q 031176 117 -APDWRQALGLKKTVEDR 133 (164)
Q Consensus 117 -eP~n~Qa~~L~~~Ie~~ 133 (164)
-|+++..+.++..++..
T Consensus 405 lG~~Hp~~~~~~~~l~~~ 422 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEEC 422 (429)
T ss_dssp TCTTSHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 79999999988776654
No 179
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.65 E-value=0.0061 Score=49.83 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh-----hC
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE-----IA 117 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~-----~e 117 (164)
...+.+++|.+.. ..++..+|++.++..+.. .+++...-.++++||..|.++|+|++|+.+++++++ .+
T Consensus 181 ~~~~~~~lg~~y~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 181 TIQSLFVIAGNYD---DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 3667888899888 566778888888876652 123344567899999999999999999999999999 67
Q ss_pred CCcHHH
Q 031176 118 PDWRQA 123 (164)
Q Consensus 118 P~n~Qa 123 (164)
|....+
T Consensus 258 ~~~~~~ 263 (378)
T 3q15_A 258 DLLPKV 263 (378)
T ss_dssp GGHHHH
T ss_pred hhHHHH
Confidence 766433
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.64 E-value=0.0042 Score=49.86 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
..+..+++..+. . ++..+|++.++..+... +++....++++.+|..|.++|+|++|+.++++++++.|++.
T Consensus 116 a~~~~~lg~~~~---~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 116 AMALDRAGKLME---P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHT---T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 456677777775 3 78889999998876531 12223358999999999999999999999999999988764
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.64 E-value=0.0053 Score=51.13 Aligned_cols=94 Identities=10% Similarity=-0.067 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHH-------HHHHHHH-------hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc
Q 031176 20 DQIPWCDRDIIAGC-------EREVAEA-------NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ 85 (164)
Q Consensus 20 ~~lp~~~~~~l~~~-------e~~y~~~-------~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~ 85 (164)
-++|-++++++.-. ..+|.+. ....+.....|..+.... ..++..+++..|+..... .+|..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~---~~~r~~dA~~~l~~a~~~-~d~~~ 169 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYG---AAERWTDVIDQVKSAGKW-PDKFL 169 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHH---HTTCHHHHHHHHTTGGGC-SCHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HcCCHHHHHHHHHHhhcc-CCccc
Confidence 56777888887642 2333333 112222226777776666 567788888888876653 22322
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
..+.+|+|+.++.++|++++|+.++++++.-.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 36799999999999999999999999998544
No 182
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.52 E-value=0.042 Score=39.34 Aligned_cols=88 Identities=10% Similarity=-0.000 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hc
Q 031176 27 RDIIAGCEREVAEA-NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TG 101 (164)
Q Consensus 27 ~~~l~~~e~~y~~~-~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~ 101 (164)
+.+..+..+-|.+. ..+.+ .+. ++..+. +...+.+|++.++..... + ..+++|+|+..|.+ .+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~---~g~~~~~A~~~~~~Aa~~-g----~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSN---SQINKQKLFQYLSKACEL-N----SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTC---TTSCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHCSSSCC
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHH---cCCCHHHHHHHHHHHHcC-C----CHHHHHHHHHHHHcCCCCCc
Confidence 34566666677776 44433 333 666555 445667799999998885 3 35999999999999 99
Q ss_pred chHHHHHHHHHHHhhCCCcHHHHHHHH
Q 031176 102 EYAKSRQILEQCLEIAPDWRQALGLKK 128 (164)
Q Consensus 102 ~Y~~A~~~~~~lL~~eP~n~Qa~~L~~ 128 (164)
|+++|+++++++.+. .+..+..-.-
T Consensus 76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg 100 (138)
T 1klx_A 76 DLRKAAQYYSKACGL--NDQDGCLILG 100 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence 999999999999886 5565554433
No 183
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.51 E-value=0.0081 Score=47.87 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANS-SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~-~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
+.+....+..+..+. ..++..+|+..++..+... .++....++++.+|..|+..|+|++|+.++++++++
T Consensus 6 ~~~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 6 EASCLELALEGERLC---KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp CCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 346677899999999 6678889999999988852 122235899999999999999999999999999887
No 184
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.51 E-value=0.0052 Score=47.21 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch----------HHHHHHHHHHHhhCCCcHHHHH
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY----------AKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y----------~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
-...++++..++..+.. +| ..-+.|++++.++.++++| ++|+.+++++|+++|++.++.-
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~ 84 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence 34567888899888885 35 4569999999999999875 5999999999999999986543
No 185
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.50 E-value=0.0042 Score=50.65 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=52.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 53 LSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 53 yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.+..+. ..++..+|++.++..+.. ..++...-++++++|..|+.+|+|++|+.+++++|++.|.+
T Consensus 109 ~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 109 RGMYEL---DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH---HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 556555 567889999999997763 13344567899999999999999999999999999996654
No 186
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.003 Score=41.40 Aligned_cols=77 Identities=6% Similarity=-0.002 Sum_probs=58.5
Q ss_pred HHHHHHHHHH-hcCCCchH-HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHH
Q 031176 31 AGCEREVAEA-NDDKQKSE-SIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQ 108 (164)
Q Consensus 31 ~~~e~~y~~~-~~~~~s~~-~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~ 108 (164)
..+...|.+. ..++.+.. +.+++|.++. ..++..+|++.++..+.. +|. ..+.+++ +.+.+|..
T Consensus 17 ~~A~~~~~~al~~~p~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--~p~-~~~~~~~--------~~~~~a~~ 82 (99)
T 2kc7_A 17 ENALQALEEFLQTEPVGKDEAYYLMGNAYR---KLGDWQKALNNYQSAIEL--NPD-SPALQAR--------KMVMDILN 82 (99)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CTT-STHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CCC-cHHHHHH--------HHHHHHHH
Confidence 3444555555 44555777 9999999999 677889999999999986 343 3355544 88999999
Q ss_pred HHHHHHhhCCCcH
Q 031176 109 ILEQCLEIAPDWR 121 (164)
Q Consensus 109 ~~~~lL~~eP~n~ 121 (164)
++++++..+|++.
T Consensus 83 ~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 83 FYNKDMYNQLEHH 95 (99)
T ss_dssp HHCCTTHHHHCCS
T ss_pred HHHHHhccCcccc
Confidence 9999999999874
No 187
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.48 E-value=0.025 Score=48.50 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=45.7
Q ss_pred HHHHHHHHH-hcCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHhhcchHHHHH
Q 031176 32 GCEREVAEA-NDDKQK-SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVG-YYRTGEYAKSRQ 108 (164)
Q Consensus 32 ~~e~~y~~~-~~~~~s-~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg-~~kl~~Y~~A~~ 108 (164)
.++..|++. ..++.+ ..+..+|+..+. ..++..+++++++..+.. .| .....++..+.. +...|++++|+.
T Consensus 339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~Al~~--~~-~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFAR---RAEGIKSGRMIFKKARED--AR-TRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp HHHHHHHHHHHSSSSCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC--TT-CCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHhCccccCchHHHHHHHHHHH---HhcCHHHHHHHHHHHHhc--cC-CchHHHHHHHHHHHHHcCChhHHHH
Confidence 344455555 222222 235555665555 355666777777776664 22 222222222222 235677777777
Q ss_pred HHHHHHhhCCCcHHH
Q 031176 109 ILEQCLEIAPDWRQA 123 (164)
Q Consensus 109 ~~~~lL~~eP~n~Qa 123 (164)
+++++|+..|++..+
T Consensus 413 ~~e~al~~~p~~~~~ 427 (530)
T 2ooe_A 413 IFELGLKKYGDIPEY 427 (530)
T ss_dssp HHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCCHHH
Confidence 777777777776543
No 188
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.28 E-value=0.014 Score=49.91 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-----chHHH
Q 031176 32 GCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-----EYAKS 106 (164)
Q Consensus 32 ~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-----~Y~~A 106 (164)
+..+-|.+.. ..++.+.|+++..+......++..+|++.++..+.. + ..+++|+|+..|. .| |+++|
T Consensus 235 ~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g----~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D----QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 3333444434 446677777777755344477778888888777764 2 3477888887777 44 88888
Q ss_pred HHHHHHHHhhCCCcHHHHHHH
Q 031176 107 RQILEQCLEIAPDWRQALGLK 127 (164)
Q Consensus 107 ~~~~~~lL~~eP~n~Qa~~L~ 127 (164)
+++++++. |++..+.--.
T Consensus 307 ~~~~~~Aa---~g~~~A~~~L 324 (452)
T 3e4b_A 307 EAHFEKAV---GREVAADYYL 324 (452)
T ss_dssp HHHHHTTT---TTCHHHHHHH
T ss_pred HHHHHHHh---CCCHHHHHHH
Confidence 88887777 6666655443
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.016 Score=47.32 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCC--------------chHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPL--------------QQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~--------------~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
.|.++++-|-.++ +.+++.+|++.+.++++...... ....+++.|+..|++.|+|++|.+++.
T Consensus 3 ~p~~~l~~a~~l~---~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 3 LPGSKLEEARRLV---NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp STTHHHHHHHHHH---HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4677889999999 66789999999999998632211 123579999999999999999999999
Q ss_pred HHHhhCCCcHHH
Q 031176 112 QCLEIAPDWRQA 123 (164)
Q Consensus 112 ~lL~~eP~n~Qa 123 (164)
.+++..|...++
T Consensus 80 ~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 80 HSTEYMMQFAKS 91 (434)
T ss_dssp HTHHHHHTSCHH
T ss_pred HHHHHHHHccch
Confidence 999987775554
No 190
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.23 E-value=0.032 Score=47.33 Aligned_cols=67 Identities=7% Similarity=0.135 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHh----hcchHHHHHHHHHHHhhC
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYR----TGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~k----l~~Y~~A~~~~~~lL~~e 117 (164)
++++.+++++.+.+...+.+.++|++.++..+.. + ..+++|+|+..|++ .+++++|.++++++++..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 5678899999888765577899999999998875 2 25899999999999 899999999999998864
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.21 E-value=0.015 Score=49.96 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=65.0
Q ss_pred HHHHH-hcCCCchHHHHHHHHHHHhcC----ChhHHH-------HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcch
Q 031176 36 EVAEA-NDDKQKSESIMRLSWALVHSR----QAEDVQ-------RGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEY 103 (164)
Q Consensus 36 ~y~~~-~~~~~s~~~~F~yA~aLi~S~----~~~d~~-------~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y 103 (164)
.|++. ...+.+++.-++|+..+.++. ..+++. +++.+++..+.. ..| +..+.|+.++..+.+.|++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p-~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLK-KNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCS-SCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCc-ccHHHHHHHHHHHHhcCCH
Confidence 45555 334457889999998888531 134443 899999998862 134 4568999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcH
Q 031176 104 AKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 104 ~~A~~~~~~lL~~eP~n~ 121 (164)
++|+..++++|++.|.+.
T Consensus 338 ~~A~~~~~~al~~~p~~~ 355 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHSSSSCH
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999985
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.01 E-value=0.058 Score=46.01 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh----cchHHHHHHHHHHHhhCCCcHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT----GEYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl----~~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
+++.++++..+.....+.+..++++.++..+.. + + ..-..+|+|+..|.+. +++++|+++++++. |+|..
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~ 249 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-T-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA 249 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-C-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-C-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH
Confidence 348888888888766666888888888887775 2 2 2234557888888766 78888888888876 77776
Q ss_pred HHHHHHHH
Q 031176 123 ALGLKKTV 130 (164)
Q Consensus 123 a~~L~~~I 130 (164)
+..-.-.+
T Consensus 250 a~~~Lg~~ 257 (452)
T 3e4b_A 250 SWVSLAQL 257 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555444
No 193
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.87 E-value=0.034 Score=44.65 Aligned_cols=70 Identities=10% Similarity=-0.002 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCC--CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANS---SPP--LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~--~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.+.+++++.+. ..++..++++.+++.+... +++ +....++++||..++..|+|++|+.+++++|++.|..
T Consensus 94 ~~~~~la~~~~---~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 94 WSLIQQSEILF---AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 44677788877 5667788888888876531 122 3445678889999999999999999999999998863
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.63 E-value=0.11 Score=44.97 Aligned_cols=91 Identities=9% Similarity=0.028 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHH---hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH
Q 031176 28 DIIAGCEREVAEA---NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 28 ~~l~~~e~~y~~~---~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~ 104 (164)
..+..+++..... ..+..++.+..-+|..++ ..++...|+..++..+.. +| . -..+..++..+.-.|+++
T Consensus 255 ~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l---~~gd~d~A~~~l~rAl~L--n~-s-~~a~~llG~~~~~~G~~~ 327 (372)
T 3ly7_A 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSAL---VKGKTDESYQAINTGIDL--EM-S-WLNYVLLGKVYEMKGMNR 327 (372)
T ss_dssp HHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH--CC-C-HHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHhc--CC-C-HHHHHHHHHHHHHCCCHH
Confidence 4455555555543 445567777777777776 568999999999999986 23 2 356678899999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHH
Q 031176 105 KSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 105 ~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+|...++++++++|..+...-
T Consensus 328 eA~e~~~~AlrL~P~~~t~~~ 348 (372)
T 3ly7_A 328 EAADAYLTAFNLRPGANTLYW 348 (372)
T ss_dssp HHHHHHHHHHHHSCSHHHHHH
T ss_pred HHHHHHHHHHhcCCCcChHHH
Confidence 999999999999999976543
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.58 E-value=0.044 Score=37.51 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHhhcc---hHHHHHHHHHHHhhCCCcHHHHHHHHHHHh
Q 031176 86 QREKLYLLAVGYYRTGE---YAKSRQILEQCLEIAPDWRQALGLKKTVED 132 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~---Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~ 132 (164)
.-+.++-+|.+.|..++ .++|+..++++|+++|+|..+.-+.-.+.-
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~ 54 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF 54 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH
Confidence 34999999999987776 899999999999999999999998855533
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.52 E-value=0.053 Score=48.46 Aligned_cols=90 Identities=6% Similarity=-0.011 Sum_probs=73.3
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhCCC
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~eP~ 119 (164)
..++.+.++-+.-+|++-+-.. .+.+++++.++..+.. +| +.-.||+|-.....+++ .|++|++|++++++.+|+
T Consensus 101 ~~~pK~y~aW~hR~w~l~~l~~-~~~~~el~~~~k~l~~--d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 101 RVNPKSYGTWHHRCWLLSRLPE-PNWARELELCARFLEA--DE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp HHCTTCHHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HhCCCCHHHHHHHHHHHHHccc-ccHHHHHHHHHHHHhh--cc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 4456688999999999985432 2578999999999996 44 44599999999999999 999999999999999999
Q ss_pred cHHHHHHHHHHHhHh
Q 031176 120 WRQALGLKKTVEDRI 134 (164)
Q Consensus 120 n~Qa~~L~~~Ie~~~ 134 (164)
|..|=.-+..+-.++
T Consensus 177 n~saW~~r~~ll~~l 191 (567)
T 1dce_A 177 NYSSWHYRSCLLPQL 191 (567)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhh
Confidence 998766666654443
No 197
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.38 E-value=0.2 Score=42.04 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP 118 (164)
..++++|.+++..|+|++|++.+.+.|...|
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~ 131 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDE 131 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 3345555555555555555555555555554
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.046 Score=44.53 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN---SSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~---~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP 118 (164)
...+..++|..+. +.+++.+|+.++++++.. ..+....-+++..++..|..+|+|++|+.++++++.+.|
T Consensus 134 ~~~~~~~la~~~~---~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 134 KHSLSIKLATLHY---QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 4677888888888 778899999999887653 233456678999999999999999999999999998754
No 199
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.98 E-value=0.081 Score=44.52 Aligned_cols=71 Identities=17% Similarity=0.055 Sum_probs=52.6
Q ss_pred hHHHHHH--HHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHhhcchHHHHHHHHHHHhh------
Q 031176 47 SESIMRL--SWALVHSRQAEDVQRGIAMLEASLANSSPPLQ--QREKLYLLAVGYYRTGEYAKSRQILEQCLEI------ 116 (164)
Q Consensus 47 ~~~~F~y--A~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~--~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~------ 116 (164)
..+..++ ||..+... .+.++.++.+++++... ++. ....+|. ++.++|+|++|.+.++.+++.
T Consensus 174 d~~l~~Laea~v~l~~g-~~~~q~A~~~f~El~~~---~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 174 NEMILNLAESYIKFATN-KETATSNFYYYEELSQT---FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHHHHHHHHHHHT-CSTTTHHHHHHHHHHTT---SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh---CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 3445555 56677554 34688999999998775 333 3355566 899999999999999999987
Q ss_pred ----CCCcHHHH
Q 031176 117 ----APDWRQAL 124 (164)
Q Consensus 117 ----eP~n~Qa~ 124 (164)
+|+|..+.
T Consensus 247 k~~~~p~~~~~L 258 (310)
T 3mv2_B 247 KENAVLYKPTFL 258 (310)
T ss_dssp CHHHHSSHHHHH
T ss_pred cccCCCCCHHHH
Confidence 47787665
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.68 E-value=0.18 Score=42.61 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHH-hcCCC--chHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh
Q 031176 26 DRDIIAGCEREVAEA-NDDKQ--KSESIMRLSWALVHSR--QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT 100 (164)
Q Consensus 26 ~~~~l~~~e~~y~~~-~~~~~--s~~~~F~yA~aLi~S~--~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl 100 (164)
-...+...+...++. .-++. ...+..-++-..-+-. -.++.++|.++|+..+.- +|...-+.+|+.|-.+++.
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTT
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHh
Confidence 345666666666666 33433 1223333332222111 136899999999999986 4544469999999999885
Q ss_pred -cchHHHHHHHHHHHhhCCC
Q 031176 101 -GEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 101 -~~Y~~A~~~~~~lL~~eP~ 119 (164)
++|+.|+++++++|+..|.
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGG
T ss_pred cCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999998877
No 201
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.66 E-value=0.16 Score=42.13 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc--chHHHHHHHHHHHhhCCCcHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG--EYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~--~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
...+.|..+++++...+ ++++++.+.++.. +| ..-..|+|-......++ +|++++++++.+|+.+|.|.++=.
T Consensus 33 ~~~~~~~~a~~~~~e~s--~~aL~~t~~~L~~--nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~ 107 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYS--ERALHITELGINE--LA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWN 107 (306)
T ss_dssp HHHHHHHHHHHHTTCCS--HHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHHcCCCC--HHHHHHHHHHHHH--Cc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHH
Confidence 44566777777654333 5799999999986 34 55589999999999999 999999999999999999999877
Q ss_pred HHHHHH
Q 031176 126 LKKTVE 131 (164)
Q Consensus 126 L~~~Ie 131 (164)
-+..|-
T Consensus 108 ~R~~iL 113 (306)
T 3dra_A 108 YRQLII 113 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.45 E-value=0.3 Score=40.45 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=65.5
Q ss_pred CCCchHHHHHHHHHH----HhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchH--HHHHHHHHHHhh
Q 031176 43 DKQKSESIMRLSWAL----VHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYA--KSRQILEQCLEI 116 (164)
Q Consensus 43 ~~~s~~~~F~yA~aL----i~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~--~A~~~~~~lL~~ 116 (164)
++.+.++-..-.|.| -+.....+..+.+++++..+.. +| ..-.+|+|-.....+++.|+ +++.+++++++.
T Consensus 99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 444666666667888 4322125678999999999986 45 44589999999999999999 999999999999
Q ss_pred CCCcHHHHHHHHHH
Q 031176 117 APDWRQALGLKKTV 130 (164)
Q Consensus 117 eP~n~Qa~~L~~~I 130 (164)
+|.|-.|=.=+..+
T Consensus 176 d~~N~sAW~~R~~l 189 (306)
T 3dra_A 176 DLKNNSAWSHRFFL 189 (306)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99998776544443
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.42 E-value=0.39 Score=42.82 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc--chHHHHHHHHHH
Q 031176 43 DKQKSESIMRLSWALVHSRQ-------AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG--EYAKSRQILEQC 113 (164)
Q Consensus 43 ~~~s~~~~F~yA~aLi~S~~-------~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~--~Y~~A~~~~~~l 113 (164)
++...++-..-.++|.+-.. ...++++++.++..+.. +| ..-.+||+-+....+++ +|++|+.+++++
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~ 135 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NP-KSYGTWHHRCWLLSRLPEPNWARELELCARF 135 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 33455666666777764322 12389999999999986 44 55699999999999999 669999999999
Q ss_pred HhhCCCcHHHHHHHHHHHhH
Q 031176 114 LEIAPDWRQALGLKKTVEDR 133 (164)
Q Consensus 114 L~~eP~n~Qa~~L~~~Ie~~ 133 (164)
|+++|.|-.|=.-+..+-..
T Consensus 136 l~~d~~N~~aW~~R~~~l~~ 155 (567)
T 1dce_A 136 LEADERNFHCWDYRRFVAAQ 155 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHH
Confidence 99999998877665555443
No 204
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.36 E-value=0.085 Score=42.30 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ----QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~----~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
+..+..++..+ ..++..+++..+++.+... |.. .-.+++.++..+...|+|++|+.++++++++.|..
T Consensus 15 ~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (373)
T 1hz4_A 15 EFNALRAQVAI---NDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 86 (373)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 44455555555 4556777777777766642 211 12366777788888888888888888887776543
No 205
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=94.00 E-value=0.57 Score=39.44 Aligned_cols=89 Identities=6% Similarity=-0.029 Sum_probs=70.7
Q ss_pred hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcc-hHHHHHHHHHHHhhCCC
Q 031176 41 NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGE-YAKSRQILEQCLEIAPD 119 (164)
Q Consensus 41 ~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~-Y~~A~~~~~~lL~~eP~ 119 (164)
..++.+.++-..-.|+|-+-.. .+..+.++.++.++.. +| ..-.+|+|-.....+++. +++++.|++.+++.+|.
T Consensus 102 ~~~PKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~l~~--dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 102 RVNPKSYGTWHHRCWLLSRLPE-PNWARELELCARFLEA--DE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred HhCCCCHHHHHHHHHHHhccCc-ccHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 4456688888888999986543 2578899999999986 45 445899999999999999 59999999999999999
Q ss_pred cHHHHHHHHHHHhH
Q 031176 120 WRQALGLKKTVEDR 133 (164)
Q Consensus 120 n~Qa~~L~~~Ie~~ 133 (164)
|..|=.=+..+-..
T Consensus 178 N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 178 NYSSWHYRSCLLPQ 191 (331)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99876554444333
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.98 E-value=0.25 Score=41.70 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHhh-----cchHHHHHHHHHHHhhCCCc
Q 031176 63 AEDVQRGIAMLEASLANSSPPL-QQREKLYLLAVGYYRT-----GEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~-~~rd~lY~LAlg~~kl-----~~Y~~A~~~~~~lL~~eP~n 120 (164)
...+..+..+|+..+.- ||. ...-++-+|++.|++. |+.++|+++.+++|++.|++
T Consensus 176 l~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 176 PDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 45788999999999996 343 2456999999999996 99999999999999999976
No 207
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.75 E-value=0.58 Score=39.82 Aligned_cols=60 Identities=7% Similarity=-0.033 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 68 RGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 68 ~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+++++.+.++.. +| ..-.+|+|-......++ +|++++.+++.+|+.+|.|-++=.-+..+
T Consensus 72 ~AL~lt~~~L~~--nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl 132 (349)
T 3q7a_A 72 RALELTEIIVRM--NP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHH--CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--Cc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 355555555543 22 22345555555555555 35555555555555555555544433333
No 208
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.62 E-value=0.88 Score=38.26 Aligned_cols=90 Identities=8% Similarity=0.033 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh-------
Q 031176 28 DIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT------- 100 (164)
Q Consensus 28 ~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl------- 100 (164)
++|.-+++... .++.+..+=..-.|.+-+... ..++.++.....+.. +| ....+|+|.+....++
T Consensus 128 ~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~--~p-~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 128 RELELCARFLE---ADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITR--NF-SNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHH--CS-CCHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHhhhccccc
Confidence 45555544443 344455555555777765443 257888999998886 34 5569999999999998
Q ss_pred -------cchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 101 -------GEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 101 -------~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
+.|++++.+++.++.++|+|+-+=.
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6799999999999999999998875
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.60 E-value=0.086 Score=45.85 Aligned_cols=68 Identities=4% Similarity=-0.064 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Q 031176 63 AEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI-----APDWRQALGLKKTV 130 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~-----eP~n~Qa~~L~~~I 130 (164)
.+++.+|+.+++..+... .+.+..-..+.+||..|..+|+|++|+.+++++|++ -|+++.......-+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 345677788877766531 122345578899999999999999999999999975 57777665544444
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.47 E-value=0.19 Score=44.34 Aligned_cols=69 Identities=7% Similarity=-0.056 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI-----APDWRQALGLKKTV 130 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~-----eP~n~Qa~~L~~~I 130 (164)
..+++.+|+.+++..+... .+.+..-..+.+||..|..+|+|++|..+++++|++ -|+++.......-+
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5667788888888776532 122345678899999999999999999999999976 57777655544433
No 211
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.55 E-value=2.2 Score=36.20 Aligned_cols=85 Identities=5% Similarity=-0.070 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhh-c-chHHHHHHHHHHHhhCCCcHHH
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRT-G-EYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl-~-~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
...+-..-.+.|.+-. ...+++++.++.++.. +| ..-..|++-.....++ + ++++++.+++.+|+.+|.|-.+
T Consensus 87 ~ytaWn~R~~iL~~l~--~~l~eEL~~~~~~L~~--nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A 161 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLN--KSLEDELRLMNEFAVQ--NL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT 161 (349)
T ss_dssp CHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHT--TC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH
T ss_pred hHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH
Confidence 3444444455665322 2588999999999986 45 4559999999999998 8 9999999999999999999988
Q ss_pred HHHHHHHHhHhh
Q 031176 124 LGLKKTVEDRIA 135 (164)
Q Consensus 124 ~~L~~~Ie~~~~ 135 (164)
=.-+.-+-..+.
T Consensus 162 W~~R~wvl~~l~ 173 (349)
T 3q7a_A 162 WAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 776665554443
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.58 E-value=0.29 Score=42.18 Aligned_cols=69 Identities=12% Similarity=-0.059 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANS-----SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI-----APDWRQALGLKKTV 130 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~-----eP~n~Qa~~L~~~I 130 (164)
+.+++.+++++++..+... .+.+..-..+.+||..|..+|+|++|+.+++++|++ -|+++........+
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3457788999999988642 112344578899999999999999999999999976 46777665544444
No 213
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.32 E-value=1.4 Score=44.54 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.++.+-++||.++. +.+.+++||+-++.. +..+.++.++-.+.++|+|++|.+|+.++.+.+|+.
T Consensus 1103 n~p~vWsqLAKAql---~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQL---QKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred CCHHHHHHHHHHHH---hCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence 46899999999999 888999999987541 235889999999999999999999999999999775
No 214
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.23 E-value=1.8 Score=36.57 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH-------HhhCCCcHHH
Q 031176 51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC-------LEIAPDWRQA 123 (164)
Q Consensus 51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l-------L~~eP~n~Qa 123 (164)
-.++-+++ ..++..+++..++.++.. +| -.-+.+..|-.++++.|++.+|++.++++ |-++|. +.-
T Consensus 175 ~~~~~~~l---~~g~~~~a~~~l~~~~~~--~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~-~~l 247 (388)
T 2ff4_A 175 TAKAEAEI---ACGRASAVIAELEALTFE--HP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTL 247 (388)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHHH--ST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHH
T ss_pred HHHHHHHH---HCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC-HHH
Confidence 34555556 456677888899998885 45 34468999999999999999999987765 346774 555
Q ss_pred HHHHHHHHh
Q 031176 124 LGLKKTVED 132 (164)
Q Consensus 124 ~~L~~~Ie~ 132 (164)
++|.+.|-.
T Consensus 248 ~~l~~~il~ 256 (388)
T 2ff4_A 248 RALNERILR 256 (388)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 666666544
No 215
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=90.14 E-value=0.66 Score=31.66 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=41.7
Q ss_pred cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 60 SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 60 S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|++.+-..+|++++...+..+. ..+..++ +- -|.+|++++..+++.+|+...-..+++.|.+.+.|
T Consensus 10 ~~~~~~~~~Ai~lv~~Ave~D~-~g~y~eA-----l~-----lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~R 75 (83)
T 2w2u_A 10 SAQVMLEEMARKYAINAVKADK-EGNAEEA-----IT-----NYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRR 75 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-TTCHHHH-----HH-----HHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH-hccHHHH-----HH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4455667788888777665311 1111122 11 14456666777888899988877888888887766
No 216
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.73 E-value=1.3 Score=34.31 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC---CCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 49 SIMRLSWALVHSRQAEDVQRGIAMLEASLANSS---PPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 49 ~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~---~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
+.|.-.-.|+-...-+.+.---.+|-.+...+. .|...-+.++|+|-++|..++|.+|..+++++|+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 445555566633333444433444444333211 12334568999999999999999999999998764
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.92 E-value=4.2 Score=34.96 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=23.1
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 92 LLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 92 ~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
-+|+.+.-.|++++|+.+++++|+++|+.
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln~s~ 310 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLEMSW 310 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Confidence 35555666799999999999999999864
No 218
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.71 E-value=0.46 Score=44.52 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
++++.+-|+++=...+.- .|..+ ++||+||.+|.++|+|++|+-.++.+
T Consensus 349 ~K~~~elAL~~Ak~AV~~--aPseF-~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTEL--ALDSF-ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSSCH-HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhc--Cchhh-HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 356778899988888874 57777 99999999999999999999876665
No 219
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.33 E-value=0.93 Score=36.28 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHH--hhC
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCL--EIA 117 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL--~~e 117 (164)
+-+..+...|- ..+++.++.-+|.. .+.--..||=+++|+++++|.+|..+++.+| +++
T Consensus 34 eY~lL~~I~Ly---yngEY~R~Lf~L~~--------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 34 EYRMLMSIVLY---LNGEYTRALFHLHK--------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp CTHHHHHHHHH---HTTCHHHHHHHHHT--------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHHhhhhhhhh---hcchHhHHHHHHHh--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55566666666 66777777777643 2336789999999999999999999999999 444
No 220
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.20 E-value=4.5 Score=33.53 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=59.6
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH-HHHHHHHhHhhhhhH
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL-GLKKTVEDRIAKDGV 139 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~-~L~~~Ie~~~~~dGl 139 (164)
+.+....+++.+++-++. .|.+. +.--.|---++=.|++++|.+=++.+.+++|+..... .++++|...+.|..+
T Consensus 9 ~~g~L~~al~~~~~~VR~--~P~da-~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKA--SPKDA-SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp TTTCHHHHHHHHHHHHHT--CTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHh--CCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999996 45443 5555566667889999999999999999999987665 559999888887443
No 221
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=87.15 E-value=2.3 Score=29.35 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=42.7
Q ss_pred cCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 60 SRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 60 S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|.+.....+|++++...+..+. ..+ |--|+-+ |.+|..++-.+++.+|+...-..|+..+.+.+.|
T Consensus 6 ~~~~~~l~~Ai~lv~~Ave~D~-~g~-----y~eAl~~-----Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~R 71 (93)
T 1wfd_A 6 SGQDSDSTAAVAVLKRAVELDA-ESR-----YQQALVC-----YQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDR 71 (93)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH-TTC-----HHHHHHH-----HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHH-hCC-----HHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4566677788888877666411 111 2222222 4566677888888899888777788888777666
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.19 E-value=1.7 Score=32.95 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc---chHHHHHHHHHHHhhC-CC
Q 031176 62 QAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG---EYAKSRQILEQCLEIA-PD 119 (164)
Q Consensus 62 ~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~---~Y~~A~~~~~~lL~~e-P~ 119 (164)
.++++....+-+++-+.. ++ ...+..|.+|++..+.+ ++.++...++.+++.+ |+
T Consensus 10 ~~~~l~~~~~~y~~e~~~--~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~ 68 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAA--GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE 68 (152)
T ss_dssp CHHHHHHHHHHHHHHHHT--TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHHHcc--CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 566777777777776664 23 45699999999999988 8889999999999999 73
No 223
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=84.60 E-value=17 Score=30.71 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
..||.++|..|-.+++++|++.|....+..-++.+
T Consensus 216 ~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil 250 (325)
T 3mv2_A 216 QHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIK 250 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 47999999999999999999999876555544444
No 224
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=83.01 E-value=2.1 Score=23.42 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=3.4
Q ss_pred HHHHhh
Q 031176 157 AAALAR 162 (164)
Q Consensus 157 ~~a~~r 162 (164)
+.+|||
T Consensus 22 g~~ms~ 27 (27)
T 2lbg_A 22 GSAMSR 27 (27)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 446764
No 225
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=82.85 E-value=1.6 Score=34.02 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCc
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDW 120 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n 120 (164)
.+.-.|+||++.-+.-.++|.+|.++...+++.-|..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4667899999999999999999999999999999865
No 226
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=82.44 E-value=18 Score=30.58 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 031176 96 GYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKT 129 (164)
Q Consensus 96 g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~ 129 (164)
..||.++|..|-.+++++|++.|....+..-++.
T Consensus 207 ~a~K~KNy~tAa~fArrLLel~p~~~~~~qArki 240 (320)
T 3mkr_B 207 LFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKI 240 (320)
T ss_dssp HHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4799999999999999999999976644443333
No 227
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=81.81 E-value=3.3 Score=37.78 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIA 135 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~ 135 (164)
.|.+.-.|-.++..|+|.-|.+.++.++..+|+|++|+.|+...-+++.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999999999987755543
No 228
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=81.58 E-value=3.3 Score=27.92 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
..+||+++...+..+. .-+..+ |+- -|.+|++++..+++.+|+...-..+++.|.+.+.|
T Consensus 8 ~~~Ai~lv~~Ave~D~-~g~y~e-----Al~-----lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~R 67 (83)
T 2v6y_A 8 EDMARKYAILAVKADK-EGKVED-----AIT-----YYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKR 67 (83)
T ss_dssp HHHHHHHHHHHHHHHH-TTCHHH-----HHH-----HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-hccHHH-----HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5577777776655311 111111 221 13456666777888899888877888888887766
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.87 E-value=3.1 Score=32.10 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCC------C----------------CCCchHHHHHHHHHHHHhhcchH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANS------S----------------PPLQQREKLYLLAVGYYRTGEYA 104 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~------~----------------~~~~~rd~lY~LAlg~~kl~~Y~ 104 (164)
.++.+.+|-++. ..++.++|...+++.+... . +-...-|+-|-+|.+|.+++++.
T Consensus 63 ~~~l~~ladalf---~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 63 YQLLVYHADSLF---HDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 357788888888 6778888888888854311 0 00112389999999999999999
Q ss_pred HHHHHHHH
Q 031176 105 KSRQILEQ 112 (164)
Q Consensus 105 ~A~~~~~~ 112 (164)
.|+...+.
T Consensus 140 ~Ai~~Le~ 147 (167)
T 3ffl_A 140 DAIAILDG 147 (167)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988554
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=80.43 E-value=1.3 Score=29.90 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
..|| |.|+..+|+.++|..|....+.+|+..
T Consensus 5 a~dc-~~lG~~~~~~~~y~~A~~W~~~Al~~~ 35 (104)
T 2v5f_A 5 AEDC-FELGKVAYTEADYYHTELWMEQALRQL 35 (104)
T ss_dssp HHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHccchHHHHHHHHHHHHhh
Confidence 3566 689999999999999999999999975
No 231
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=79.32 E-value=14 Score=33.85 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH-hc-CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHH
Q 031176 30 IAGCEREVAEA-ND-DKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSR 107 (164)
Q Consensus 30 l~~~e~~y~~~-~~-~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~ 107 (164)
+.+++..+.+. .. +..+......+|....+. .++.++|..+++..++. -| +..+.|--.+--....|+.++||
T Consensus 450 l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~--~~d~e~Ar~ife~~Lk~--~p-~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI--SKDTKTACKVLELGLKY--FA-TDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHH--HT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH--CC-CchHHHHHHHHHHHhCCCHHHHH
Confidence 45566666665 22 222334444333333322 23355666666666654 12 22233322222234456666666
Q ss_pred HHHHHHHhhCCC
Q 031176 108 QILEQCLEIAPD 119 (164)
Q Consensus 108 ~~~~~lL~~eP~ 119 (164)
...+++++..|+
T Consensus 525 ~lferal~~~~~ 536 (679)
T 4e6h_A 525 SLFESSIDKISD 536 (679)
T ss_dssp HHHHHHTTTSSS
T ss_pred HHHHHHHHhcCC
Confidence 666666666664
No 232
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=78.45 E-value=19 Score=28.79 Aligned_cols=88 Identities=15% Similarity=0.032 Sum_probs=62.6
Q ss_pred HHHHHH---hcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCC--CC------------CchHHHHHH-HHHH
Q 031176 35 REVAEA---NDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSS--PP------------LQQREKLYL-LAVG 96 (164)
Q Consensus 35 ~~y~~~---~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~--~~------------~~~rd~lY~-LAlg 96 (164)
.+|.+. -..-.+..+.+--+.|+- ...|+++|+.-|+.++.... || +...|++|. +|..
T Consensus 47 gEY~R~Lf~L~~lNT~Ts~YYk~LCy~---klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l 123 (242)
T 3kae_A 47 GEYTRALFHLHKLNTCTSKYYESLCYK---KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL 123 (242)
T ss_dssp TCHHHHHHHHHTCCBHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred chHhHHHHHHHhcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH
Confidence 345555 222235566666677777 78899999999999995432 21 234567664 6899
Q ss_pred HHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 97 YYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 97 ~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
....|+-++|.+|+.+-..+.|-...+..
T Consensus 124 ltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 124 CTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 99999999999998888888886665553
No 233
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=79.59 E-value=0.44 Score=29.07 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 031176 135 AKDGVIGIGITATAVGLIAGGIAAALARKK 164 (164)
Q Consensus 135 ~~dGliG~~i~~~a~~~~~g~~~~a~~r~~ 164 (164)
.+..++|+.++|.+++.++ .++..+.|||
T Consensus 15 srga~iGL~v~gVai~~vI-Vvsl~mlRrr 43 (43)
T 2llm_A 15 NKGAIIGLMVGGVVIATVI-VITLVMLKKK 43 (43)
Confidence 6677999988776655444 3455777775
No 234
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=77.46 E-value=15 Score=33.60 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 51 MRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 51 F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
..|+--++ ..+++.++..+++..+....++....+.|-...---.+.|+.+.+++..+++++..|++.+...
T Consensus 508 ~~y~~fe~---~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 508 NKYLDFLI---YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHHHHH---HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 34444444 2456666777777766642112234444444444444567777777777777777777654443
No 235
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.46 E-value=2 Score=38.70 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
+.-.|+||++..+.-.++|.+|.+++..+++.-|.+.
T Consensus 268 q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 268 LEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 4467899999999999999999999999999998764
No 236
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=74.66 E-value=8.3 Score=26.15 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh
Q 031176 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK 136 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~ 136 (164)
|.+|.+++-.+++.+|+...-..|++.+.+.+.|
T Consensus 39 Y~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~R 72 (86)
T 4a5x_A 39 YQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDR 72 (86)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 4456666777788898877777788888887776
No 237
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=73.57 E-value=18 Score=36.73 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHH
Q 031176 88 EKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQAL 124 (164)
Q Consensus 88 d~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~ 124 (164)
|++..++--|.+.|.|++|.++++..|.++|.+...-
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 5566666677788888888888888888888876554
No 238
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=69.97 E-value=54 Score=28.34 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHH-hcC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHH
Q 031176 28 DIIAGCEREVAEA-NDD-KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAK 105 (164)
Q Consensus 28 ~~l~~~e~~y~~~-~~~-~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~ 105 (164)
..+..+.+.+.+- ..+ .|+..+.-.+.-++. +.++.++|.++|++.... +-.++. ..+--|=-+|.+.|+.++
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~---~~g~~~~A~~l~~~M~~~-g~~Pd~-~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV---AKDDPEMAFDMVKQMKAF-GIQPRL-RSYGPALFGFCRKGDADK 158 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHT-TCCCCH-HHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHc-CCCCcc-ceehHHHHHHHHCCCHHH
Confidence 3455555555554 333 233333333444555 345666777777775554 222222 223333346677777777
Q ss_pred HHHHHHHHHh--hCCCcHHHHHHHH
Q 031176 106 SRQILEQCLE--IAPDWRQALGLKK 128 (164)
Q Consensus 106 A~~~~~~lL~--~eP~n~Qa~~L~~ 128 (164)
|.+.++.+.+ +.|+..-+..|-.
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 7777777765 3565554444433
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=69.94 E-value=32 Score=28.75 Aligned_cols=38 Identities=13% Similarity=-0.135 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 86 QREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 86 ~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
..+++.-++-.+...|+|.+|...++.++..+|-++.+
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~ 207 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPL 207 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34677788889999999999999999999999999854
No 240
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=63.21 E-value=12 Score=24.79 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHhhh-hhHH
Q 031176 103 YAKSRQILEQCLEIAPDWRQALGLKKTVEDRIAK-DGVI 140 (164)
Q Consensus 103 Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~~~-dGli 140 (164)
|.+|.+++-.+++.+|+...-..|++.+.+.+.| +-+.
T Consensus 36 Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk 74 (85)
T 2v6x_A 36 YYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLK 74 (85)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667778898877777888888887776 4433
No 241
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=61.88 E-value=10 Score=33.24 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHhhcchHHHHHHHHHHHhh-CCCc
Q 031176 85 QQREKLYLLAVGYYRTGEYAKSRQILEQCLEI-APDW 120 (164)
Q Consensus 85 ~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~-eP~n 120 (164)
++-.|+||++.-|.-.++|.+|.++...+++. -|.+
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 56789999999999999999999999999999 7764
No 242
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.89 E-value=5.3 Score=34.09 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 46 KSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 46 s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
...+...+|--.. +.+|...|++.+..+......+.+.-|.+..+.-.+...+|+..+..+++++-.
T Consensus 130 ~~~~~~~la~~~~---~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 130 QAQAWINLGEYYA---QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CSSCCHHHHHHHH---HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555666666666 455555555555554443334455556666666666666666666666666543
No 243
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=59.50 E-value=13 Score=32.72 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEAS 76 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~l 76 (164)
.....+|-+|+ +-++++.|++..+..
T Consensus 149 ~n~~~LA~~L~---~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 149 SNFGRLASTLV---HLGEYQAAVDGARKA 174 (449)
T ss_dssp TCHHHHHHHHH---TTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHH---HhccHHHHHHHHHHc
Confidence 45567788888 667777888887764
No 244
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=59.48 E-value=8.2 Score=26.05 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhh---------CCC-cHHHHHHHHHHHhH
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEI---------APD-WRQALGLKKTVEDR 133 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~---------eP~-n~Qa~~L~~~Ie~~ 133 (164)
+|-=|..+|+|+.|+.|++.+++. +|. ..+=+.+++.|.+.
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E 68 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVE 68 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHH
Confidence 445578899999999998877653 222 33455556655543
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.46 E-value=25 Score=33.95 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH---HHhhCCCcHHHHHHH-HHHHh
Q 031176 65 DVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ---CLEIAPDWRQALGLK-KTVED 132 (164)
Q Consensus 65 d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~---lL~~eP~n~Qa~~L~-~~Ie~ 132 (164)
++...|..+|.|.+. ..-+.+.=+-.-.+..||.+|+|++|++|.=. +..++-..+=+.+|- +.|+.
T Consensus 49 eia~~i~~ie~l~ed-~~f~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~ 119 (963)
T 4ady_A 49 EISNELPDIEALYDD-DTFSDREMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEM 119 (963)
T ss_dssp HHHTTHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHcC-CCcchHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHH
Confidence 334567788887765 33445545666778999999999999999655 455555444445554 34443
No 246
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=58.98 E-value=19 Score=27.64 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHH--HHHhhcchHHHHHHHHHHHh
Q 031176 69 GIAMLEASLANSSPPLQQREKLYLLAV--GYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 69 gi~lLe~ll~~~~~~~~~rd~lY~LAl--g~~kl~~Y~~A~~~~~~lL~ 115 (164)
++.-+-+.++. .+||++..|-+ |+..+|+|++|++|++.+..
T Consensus 17 ~~~~~~~~LR~-----qrHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 17 LTNELIHLLGH-----SRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334455653 67899987775 78999999999999988764
No 247
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=56.74 E-value=19 Score=25.81 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHH-HHHHHHHHHhHhhh
Q 031176 64 EDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQ-ALGLKKTVEDRIAK 136 (164)
Q Consensus 64 ~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Q-a~~L~~~Ie~~~~~ 136 (164)
....+|+.++...+..+ . .--|--|+-+ |.+|.+++-.+++.+|.|.. -..|++.+.+.+.|
T Consensus 13 ~~l~kAi~lv~~Ave~D--~----ag~y~eAl~l-----Y~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~R 75 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQED--K----AGNYEEALQL-----YQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--H----HTCHHHHHHH-----HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--H----ccCHHHHHHH-----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 35667777776655431 0 0112222222 44566667777888876665 55677777777666
No 248
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=55.85 E-value=99 Score=26.61 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=62.2
Q ss_pred HHHHHHH-hcC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHH
Q 031176 34 EREVAEA-NDD-KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILE 111 (164)
Q Consensus 34 e~~y~~~-~~~-~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~ 111 (164)
.+.+.+- ..+ .|+..+.-.+-.++. ..++.++|.+++++.....-.| +. ..+--|=-+|.+.|+.++|.+.++
T Consensus 125 ~~l~~~M~~~g~~Pd~~tyn~lI~~~~---~~g~~~~A~~l~~~M~~~G~~P-d~-~ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 125 FDMVKQMKAFGIQPRLRSYGPALFGFC---RKGDADKAYEVDAHMVESEVVP-EE-PELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTCCC-CH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccceehHHHHHHH---HCCCHHHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHhhCCCHHHHHHHHH
Confidence 4444443 334 334444444445555 4567889999999987763333 33 444555668999999999999999
Q ss_pred HHHh--hCCCcHHHHHHHHHHHh
Q 031176 112 QCLE--IAPDWRQALGLKKTVED 132 (164)
Q Consensus 112 ~lL~--~eP~n~Qa~~L~~~Ie~ 132 (164)
++-+ ..|+...+..|......
T Consensus 200 ~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 200 RLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhCCCcCHHHHHHHHHHHhc
Confidence 9865 67888888777665543
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=55.23 E-value=32 Score=26.39 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 031176 45 QKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQC 113 (164)
Q Consensus 45 ~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~l 113 (164)
..++++|++|.. -+++..|.++.+++ . ...+|-.|+-...+.|+++-|.+|+.++
T Consensus 6 ~D~~~rF~LAL~------lg~l~~A~e~a~~l-~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLALE------YGNLDAALDEAKKL-N-------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHHHH------TTCHHHHHHHHHHH-C-------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHHHHHh------cCCHHHHHHHHHHh-C-------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 357899999864 56888999998774 2 2589999999999999999999997754
No 250
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=59.16 E-value=2.7 Score=38.67 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHHHHHHHHhHh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALGLKKTVEDRI 134 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~Ie~~~ 134 (164)
.|.+.-.|-.++..|||.-|.+.++.++..+|+|++|+.|+...-+++
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l 508 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQL 508 (668)
Confidence 466677788889999999999999999999999999999987765443
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.80 E-value=49 Score=28.00 Aligned_cols=72 Identities=4% Similarity=0.075 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
+..|...-.-+...+...+..-+.-...+....+++..+--+-.|-++.+.-.++|.+|-++.-.++..-..
T Consensus 169 d~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 169 DVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 334444333333445555555555555566664555444456678888888888888888877777766443
No 252
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=53.40 E-value=19 Score=24.44 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHhh-----------CCCcHHHHHHHHHHHhHhhhhhH
Q 031176 101 GEYAKSRQILEQCLEI-----------APDWRQALGLKKTVEDRIAKDGV 139 (164)
Q Consensus 101 ~~Y~~A~~~~~~lL~~-----------eP~n~Qa~~L~~~Ie~~~~~dGl 139 (164)
++.++|++-.+.+|.. ..+++|+++|.++|.+-+++=|+
T Consensus 29 keleralqelekalaragarnvqitisaendeqakelleliarllqklgy 78 (96)
T 2jvf_A 29 KELERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKLGY 78 (96)
T ss_dssp SHHHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHhCC
Confidence 3556777777777653 34678999999999998887665
No 253
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=52.97 E-value=61 Score=29.26 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=65.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHH------------HHHHHHHHHHhhcchHHHHHHHHHHHhhCCC
Q 031176 52 RLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQRE------------KLYLLAVGYYRTGEYAKSRQILEQCLEIAPD 119 (164)
Q Consensus 52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd------------~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~ 119 (164)
.|.-.|+.+....-+.+|+++++.++..-.+..-..+ ++-.+.+.+=.......|.+.+...+...|+
T Consensus 320 ~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~ 399 (596)
T 4f52_E 320 GHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDS 399 (596)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCH
T ss_pred HHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCCh
Confidence 3777888888889999999999998876322211111 1122223333445678899999999999998
Q ss_pred cHHHHHHHHHHHhHhhhhhHHHHHHH
Q 031176 120 WRQALGLKKTVEDRIAKDGVIGIGIT 145 (164)
Q Consensus 120 n~Qa~~L~~~Ie~~~~~dGliG~~i~ 145 (164)
.....=|+.+++ .....|+.|.+|.
T Consensus 400 e~R~~iL~~LL~-~~~~~~v~~~lI~ 424 (596)
T 4f52_E 400 QGKYTLFRCLLN-TSNHSGVEAFIIQ 424 (596)
T ss_dssp HHHHHHHHHHHH-HHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 878878888776 4567888887764
No 254
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=44.55 E-value=54 Score=28.12 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcH
Q 031176 66 VQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWR 121 (164)
Q Consensus 66 ~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~ 121 (164)
..+...+++..+.. .| ...+.|+..|.-+.+.|+.++|+..++++++. |.+.
T Consensus 195 ~~Rv~~~ye~al~~--~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 195 ESRMHFIHNYILDS--FY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHHHHHHH--TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHHHHHHc--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 45566788887774 23 33688888888888999999999999999999 9986
No 255
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=43.65 E-value=1.1e+02 Score=23.38 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHHHH-hcCCCc--------hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHH
Q 031176 22 IPWCDRDIIAGCEREVAEA-NDDKQK--------SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYL 92 (164)
Q Consensus 22 lp~~~~~~l~~~e~~y~~~-~~~~~s--------~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~ 92 (164)
-|.+| .-|.+..+-|++. ++-+++ ...-.+||.-. .-+|+.++.++....+.. ...+.-.|..
T Consensus 28 ~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~----ei~D~d~aR~vy~~a~~~---hKkFAKiwi~ 99 (161)
T 4h7y_A 28 VPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK----AIQEPDDARDYFQMARAN---CKKFAFVHIS 99 (161)
T ss_dssp CSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH----HHHCGGGCHHHHHHHHHH---CTTBHHHHHH
T ss_pred CCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHH---hHHHHHHHHH
Confidence 37788 8889999999998 332222 11222333221 225666677777666553 1233333444
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhCCCcHHH
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.|-=-.+.|+.++|++...+++-+-|...|.
T Consensus 100 ~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 100 FAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 4444457899999999999999999987654
No 256
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=43.05 E-value=26 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
-..+++=|+-..|.|||++|.+.++.+=+
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46678999999999999999999876543
No 257
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=41.96 E-value=28 Score=24.52 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCLE 115 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~ 115 (164)
-..+++=|+-..|.|||++|.+.++.+=+
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678999999999999999999776533
No 258
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=41.90 E-value=94 Score=26.57 Aligned_cols=68 Identities=12% Similarity=-0.053 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhc-chHHHHHHHHHHHhhCCCcHH
Q 031176 48 ESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTG-EYAKSRQILEQCLEIAPDWRQ 122 (164)
Q Consensus 48 ~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~-~Y~~A~~~~~~lL~~eP~n~Q 122 (164)
..-..|+..+.+ .+++.++..+++.. .. |......+-..|.--++.+ +++.|+..++.+++.-|+++.
T Consensus 287 ~lw~~y~~~~~r---~~~~~~AR~i~~~A-~~---~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 287 LLRINHLNYVLK---KRGLELFRKLFIEL-GN---EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp HHHHHHHHHHHH---HHCHHHHHHHHHHH-TT---SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHh-hC---CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 344455555553 45688899999887 42 3212222323344455556 699999999999999998763
No 259
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=40.89 E-value=38 Score=20.35 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhc
Q 031176 152 IAGGIAAALARK 163 (164)
Q Consensus 152 ~~g~~~~a~~r~ 163 (164)
.++|++..|.||
T Consensus 34 ~VAGLiysm~RK 45 (46)
T 1pfi_A 34 AVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 334567778775
No 260
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=38.20 E-value=52 Score=19.74 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHH
Q 031176 138 GVIGIGITATAV 149 (164)
Q Consensus 138 GliG~~i~~~a~ 149 (164)
+.|..|++++.+
T Consensus 10 ~aIA~gVVgGv~ 21 (44)
T 2l2t_A 10 PLIAAGVIGGLF 21 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred ceEEEeehHHHH
Confidence 445455554443
No 261
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=37.26 E-value=36 Score=24.20 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
-..+++=|+-..|.|||++|.+.++.+=
T Consensus 22 Ars~~~eAl~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 22 ARSFAMEALQFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567889999999999999999987653
No 262
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=36.42 E-value=41 Score=20.27 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 031176 140 IGIGITA 146 (164)
Q Consensus 140 iG~~i~~ 146 (164)
|..++++
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 263
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=41.00 E-value=8.2 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031176 135 AKDGVIGIGITATAVGLIAGGIAAALARK 163 (164)
Q Consensus 135 ~~dGliG~~i~~~a~~~~~g~~~~a~~r~ 163 (164)
.+..++|+.++|.+++.++ .++.++.|+
T Consensus 28 ~~~a~igL~v~~vai~~vi-Vv~l~v~rr 55 (122)
T 2lp1_A 28 NKGAIIGLMVGGVVIATVI-VITLVMLKK 55 (122)
Confidence 4456888888766654443 344555554
No 264
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=34.62 E-value=41 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 87 REKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 87 rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
-..+++=|+-..|.|||++|.+.++.+=
T Consensus 37 ARS~~~eAl~~Ak~gdfe~A~~~l~eA~ 64 (120)
T 3l8r_A 37 ARSIVHEAFDAMREKNYILAEQKLQEAN 64 (120)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567889999999999999999987653
No 265
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=34.44 E-value=67 Score=18.48 Aligned_cols=6 Identities=17% Similarity=0.202 Sum_probs=2.8
Q ss_pred HHhhcC
Q 031176 159 ALARKK 164 (164)
Q Consensus 159 a~~r~~ 164 (164)
-+.|||
T Consensus 33 ~~~rrr 38 (38)
T 2k1k_A 33 FRSRRA 38 (38)
T ss_dssp HHHCCC
T ss_pred HHeecC
Confidence 344544
No 266
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=33.80 E-value=37 Score=22.67 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 91 YLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 91 Y~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
---|+-.-+.|+|++|+.++...++.
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45678899999999999999988874
No 267
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=32.70 E-value=2.4e+02 Score=26.18 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhCC-----CCCCchHHH----------HHHHHHHHHhhcchHHHHHHHHHHHhhCC
Q 031176 54 SWALVHSRQAEDVQRGIAMLEASLANS-----SPPLQQREK----------LYLLAVGYYRTGEYAKSRQILEQCLEIAP 118 (164)
Q Consensus 54 A~aLi~S~~~~d~~~gi~lLe~ll~~~-----~~~~~~rd~----------lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP 118 (164)
+...+......+--++|.+|.+.+..- ..+....+. |..=|-=....|+|+-|+++++++...-|
T Consensus 289 ~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP 368 (754)
T 4gns_B 289 AMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL 368 (754)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc
Confidence 333333444455667888888776410 001111111 11112223357899999999999999999
Q ss_pred CcHH
Q 031176 119 DWRQ 122 (164)
Q Consensus 119 ~n~Q 122 (164)
++=.
T Consensus 369 seF~ 372 (754)
T 4gns_B 369 DSFE 372 (754)
T ss_dssp SCHH
T ss_pred hhhH
Confidence 8754
No 268
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.12 E-value=42 Score=28.80 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 52 RLSWALVHSRQAEDVQRGIAMLEASLANS---SPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 52 ~yA~aLi~S~~~~d~~~gi~lLe~ll~~~---~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.--|..| .+|.++|+.+|...-..+ .....+-=+.-+||-.|.-.++|++|..+++.++..
T Consensus 157 ~evy~~I----~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 157 AQVYQQI----FDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHH----HHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHH----HHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444555 567788888773211100 112345678889999999999999999999999864
No 269
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=32.03 E-value=38 Score=22.43 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHH
Q 031176 72 MLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKS 106 (164)
Q Consensus 72 lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A 106 (164)
+.++|++. ..-....-|||=+.|||.|+|+-|
T Consensus 7 lVk~L~~n---~YLiTPsAYyLL~~~ykkg~FsL~ 38 (75)
T 2kxe_A 7 FVKGLMKN---GYLITPSAYYLLVGHFNEGKFSLI 38 (75)
T ss_dssp HHHHHHTT---TCEECHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHC---CceeCchHHHHHHHHhhcccccHH
Confidence 55666765 456667789999999999999755
No 270
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.02 E-value=20 Score=20.63 Aligned_cols=7 Identities=14% Similarity=0.059 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 031176 140 IGIGITA 146 (164)
Q Consensus 140 iG~~i~~ 146 (164)
|+.++++
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 4444444
No 271
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.43 E-value=1.1e+02 Score=25.74 Aligned_cols=51 Identities=12% Similarity=0.309 Sum_probs=33.0
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHhHhhhhhHHHHHH
Q 031176 92 LLAVGYYRTGEYAKSRQILEQCLEIAP-----DWRQALGLKKTVEDRIAKDGVIGIGI 144 (164)
Q Consensus 92 ~LAlg~~kl~~Y~~A~~~~~~lL~~eP-----~n~Qa~~L~~~Ie~~~~~dGliG~~i 144 (164)
-.+.-+++.|.+++|+...+.+|..-| ++++..++++.|+ +.++-++||-+
T Consensus 107 k~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~--icreYilal~i 162 (320)
T 3mkr_B 107 QLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIT--ICREYIVGLSM 162 (320)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 345566778888888888888887775 3456666666664 34455555533
No 272
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=29.35 E-value=1.1e+02 Score=19.13 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHhhC
Q 031176 63 AEDVQRGIAMLEASLAN 79 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~ 79 (164)
..|+.++|++||.+-+.
T Consensus 6 ~RDv~RaiELle~lq~s 22 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKT 22 (53)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 46899999999997665
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.69 E-value=2.3e+02 Score=22.80 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=34.0
Q ss_pred HHHHHHHHH-HHHhhcchHHHHHHHHHHHhhCCCcHHH-HHHHHHHHhH
Q 031176 87 REKLYLLAV-GYYRTGEYAKSRQILEQCLEIAPDWRQA-LGLKKTVEDR 133 (164)
Q Consensus 87 rd~lY~LAl-g~~kl~~Y~~A~~~~~~lL~~eP~n~Qa-~~L~~~Ie~~ 133 (164)
|+.+---|| .+.+.|+|++|.+..++.+.-.|.|+-- ..|...|.++
T Consensus 113 ~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 113 RKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 445544555 4589999999999999999988888744 4455555544
No 274
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=28.52 E-value=68 Score=27.23 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=28.8
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
..+-=++-+||-.|.-.++|++|..+++.++..
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 455678889999999999999999999999863
No 275
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=28.00 E-value=64 Score=27.84 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhhC
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEIA 117 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~e 117 (164)
..+-=++-+||-.|.-.++|++|..+++.++..-
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3455688899999999999999999999999753
No 276
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=27.59 E-value=1.3e+02 Score=22.86 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHH
Q 031176 44 KQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQ 112 (164)
Q Consensus 44 ~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~ 112 (164)
.-+...++.+|++.|++.+-.+-++.. +|.. +.- ..|-.|++=..|.-.|++++|+.....
T Consensus 38 ~Lp~~~kY~LA~SYI~~e~Ls~eQKen-Iln~-itl------kSde~yL~YWIyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 38 DMPYVIQYELASSYVMTESLTEEQRQT-VSNN-ITL------KTDEQYMLYWIYIGRSQSEEALELART 98 (161)
T ss_dssp GSCHHHHHHHHHHHHHTSSSCHHHHHH-HHHT-CCT------TSCHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCChhHHHHHHHHHHHccCCCHHHHHH-HHhh-CCc------cCCHHHHHHHHHHcCCchHHHHHHHHh
Confidence 347899999999999998777544322 2222 221 123333444455567999999987544
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.01 E-value=2.9e+02 Score=23.36 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhCCCCCCc---hHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 031176 47 SESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSPPLQ---QREKLYLLAVGYYRTGEYAKSRQILEQCL 114 (164)
Q Consensus 47 ~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~~~~~~~---~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL 114 (164)
......+|-..- ..+++.+|..+|.++........+ .-|++....-.|...+||.+|..+..++.
T Consensus 137 arl~~~La~i~e---~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 137 ARVTKDLVEIKK---EEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556666665 678999999999998764333333 34666777788999999999999998863
No 278
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=25.31 E-value=73 Score=19.28 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=22.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 53 LSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 53 yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
+-.-|++|.+|.|.+.|=.+....+..
T Consensus 12 ~L~~Ll~s~~P~Dlq~AN~LiK~mv~e 38 (45)
T 1j2j_B 12 MLARLLKSSHPEDLRAANKLIKEMVQE 38 (45)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHHHHHHHhhH
Confidence 445688999999999999998887764
No 279
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.83 E-value=46 Score=19.95 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.7
Q ss_pred hHHHHHHHHHH
Q 031176 138 GVIGIGITATA 148 (164)
Q Consensus 138 GliG~~i~~~a 148 (164)
+.|..+++++.
T Consensus 11 ~~IA~gVVgGv 21 (44)
T 2ks1_B 11 PSIATGMVGAL 21 (44)
T ss_dssp SSSTHHHHHHH
T ss_pred ceEEeehhHHH
Confidence 33444444433
No 280
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=24.69 E-value=78 Score=24.87 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 031176 102 EYAKSRQILEQCLEIAPDWRQALGLKKTV 130 (164)
Q Consensus 102 ~Y~~A~~~~~~lL~~eP~n~Qa~~L~~~I 130 (164)
+|++|+..++.+....-..++.+.|++.+
T Consensus 18 ~YE~A~~~Ye~a~~ng~~pQ~~Kql~KA~ 46 (199)
T 3ub0_A 18 AYEKARADLEEAKKNDVSPQLLKQLTKAC 46 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 68999999999999887777888888776
No 281
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.05 E-value=94 Score=26.41 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 63 AEDVQRGIAMLEASLANSSPPLQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 63 ~~d~~~gi~lLe~ll~~~~~~~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
.+|.++|+.+|... .. .....+-=++-+||-.|.-.++|++|..+++.++..
T Consensus 174 ~~DL~~A~~~L~~~-~~-~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 174 ISDLKNSTELLSGD-FN-KGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHSCCS-CC-TTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccc-cC-CCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34555565554321 11 123455667889999999999999999999999863
No 282
>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}
Probab=23.02 E-value=2.2e+02 Score=20.68 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHh-----hcchHHHHHHHHHHHhhCCCcHHH
Q 031176 65 DVQRGIAMLEASLANS----SPPLQQREKLYLLAVGYYR-----TGEYAKSRQILEQCLEIAPDWRQA 123 (164)
Q Consensus 65 d~~~gi~lLe~ll~~~----~~~~~~rd~lY~LAlg~~k-----l~~Y~~A~~~~~~lL~~eP~n~Qa 123 (164)
.+.++...|+..+..+ ++....-|+..+-.+.+.. +.+|.+=.++++++-+..|.-+++
T Consensus 131 ~~~~~l~~le~~L~~~~~l~G~~~t~ADi~~~~~l~~~~~~~~~~~~~P~l~~w~~r~~a~~P~~~~a 198 (216)
T 3vk9_A 131 KVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEA 198 (216)
T ss_dssp HHHHHHHHHHHHTTTCSBTTBSSCCHHHHHHHHHHHHGGGTTCCGGGSHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCchhCHHHHHHHHHHHccCHHHHHH
Confidence 4667888888887753 4455667887766666654 356677778888888888987765
No 283
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.61 E-value=1e+02 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhCCCcHHHHH
Q 031176 89 KLYLLAVGYYRTGEYAKSRQILEQCLEIAPDWRQALG 125 (164)
Q Consensus 89 ~lY~LAlg~~kl~~Y~~A~~~~~~lL~~eP~n~Qa~~ 125 (164)
|+-+|+-.+--...++.|+.|+.+++.+.|++-....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~n 190 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYN 190 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHH
Confidence 5555555444445566677777777777766654433
No 284
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.06 E-value=2.4e+02 Score=20.68 Aligned_cols=60 Identities=7% Similarity=0.085 Sum_probs=40.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhC
Q 031176 18 GGDQIPWCDRDIIAGCEREVAEANDDKQKSESIMRLSWALVHSRQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 18 ~~~~lp~~~~~~l~~~e~~y~~~~~~~~s~~~~F~yA~aLi~S~~~~d~~~gi~lLe~ll~~ 79 (164)
|++.++.+|++-+..+=+..+.. .....++.--..--|-++.++..+..|+.+|+.++++
T Consensus 25 Ts~~l~~~Dw~~ileicD~In~~--~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkN 84 (152)
T 3rru_A 25 TFAGVQTEDWGQFMHICDIINTT--QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQN 84 (152)
T ss_dssp TCSSCCSCCHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHh
Confidence 57888889998887765555542 2224455555555554456777788899999998886
No 285
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=21.63 E-value=1.2e+02 Score=22.14 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHH---hcCCCchHHHHHHHHHHHhc-----CChhHHHHHHHHHHHHhhC
Q 031176 25 CDRDIIAGCEREVAEA---NDDKQKSESIMRLSWALVHS-----RQAEDVQRGIAMLEASLAN 79 (164)
Q Consensus 25 ~~~~~l~~~e~~y~~~---~~~~~s~~~~F~yA~aLi~S-----~~~~d~~~gi~lLe~ll~~ 79 (164)
.|++.-.+..++..+. ..+..-+...|.| |.||++ .....+...+...|+++..
T Consensus 50 Ld~~~W~kVG~~L~~~~~~~~~~~iP~~~~~~-W~LI~~~Le~~~~~~~i~~~~~~~e~il~~ 111 (124)
T 2lpy_A 50 IDIKRWRRVGDCFQDYYNTFGPEKVPVTAFSY-WNLIKELIDKKEVNPQVMAAVAQTEEILKS 111 (124)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCSSCCTHHHHH-HHHHHHHHHCSCSCTHHHHTHHHHSCTTCS
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcCChhHHHH-HHHHHHHHcccccCHHHHHHHHHHHHHHHH
Confidence 4555555555444333 2334456666665 888876 3345677777777776654
No 286
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=21.48 E-value=1.2e+02 Score=23.42 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 031176 117 APDWRQALGLKKTVEDRIAKDGVIGIGITATAVGLIAGGIA 157 (164)
Q Consensus 117 eP~n~Qa~~L~~~Ie~~~~~dGliG~~i~~~a~~~~~g~~~ 157 (164)
+|..+....+.+...+-+.|-.++-||++. ++|+..|.|.
T Consensus 15 ~~~~~~~~~mlkeFKeFi~RGNViDLAVgV-IIGaAF~~IV 54 (174)
T 2oar_A 15 GHIDDDDKHMLKGFKEFLARGNIVDLAVAV-VIGTAFTALV 54 (174)
T ss_dssp ---------CHHHHHHHHHSCHHHHHHHHH-HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHH
Confidence 344455566677777888888888887763 2344444433
No 287
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.06 E-value=77 Score=27.01 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=28.9
Q ss_pred CchHHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 031176 84 LQQREKLYLLAVGYYRTGEYAKSRQILEQCLEI 116 (164)
Q Consensus 84 ~~~rd~lY~LAlg~~kl~~Y~~A~~~~~~lL~~ 116 (164)
..+-=++-+||-.|.-.++|++|..+++.++..
T Consensus 199 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 199 INYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 355568889999999999999999999999975
No 288
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=21.00 E-value=1.5e+02 Score=17.92 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 031176 144 ITATAVGLIAGGIAAALARK 163 (164)
Q Consensus 144 i~~~a~~~~~g~~~~a~~r~ 163 (164)
|++.++|+.++.-..-..||
T Consensus 25 IG~aVLgV~v~i~v~k~IRr 44 (46)
T 2ifo_A 25 IGGAVLTVMVGIKVYKWVRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334455554334444443
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.84 E-value=1.6e+02 Score=24.73 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHhHhhhhhHHHHHH
Q 031176 93 LAVGYYRTGEYAKSRQILEQCLEIAP-----DWRQALGLKKTVEDRIAKDGVIGIGI 144 (164)
Q Consensus 93 LAlg~~kl~~Y~~A~~~~~~lL~~eP-----~n~Qa~~L~~~Ie~~~~~dGliG~~i 144 (164)
.|.-+++.|.+++|+...+.+|..-| ++++..++++.|+ +.++-++||-+
T Consensus 120 ~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~--icrEYilal~i 174 (325)
T 3mv2_A 120 EGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILE--TAREYILGLSI 174 (325)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 45566888889999888888887754 4566777777664 44555666544
No 290
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=20.12 E-value=1.1e+02 Score=20.47 Aligned_cols=14 Identities=7% Similarity=0.375 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhc
Q 031176 150 GLIAGGIAAALARK 163 (164)
Q Consensus 150 ~~~~g~~~~a~~r~ 163 (164)
|.+.|....+++|+
T Consensus 27 G~vfg~~i~~~aRn 40 (76)
T 4f4s_A 27 AIVFAALINGVSRN 40 (76)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 33444444456653
Done!