BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031177
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O3I|A Chain A, X-Ray Crystal Structure Of Protein Cv_3147 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr68.
pdb|2O3I|B Chain B, X-Ray Crystal Structure Of Protein Cv_3147 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr68
Length = 405
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 110 WDACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFV 153
WD+ L+ P+++ D S+ EG F+ SG H + P V
Sbjct: 305 WDSALSHPLATAPDAISYFVEGEGQHVFSNGDLSGNDHGLDPSV 348
>pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
pdb|2WFD|B Chain B, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
Length = 252
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 77 LCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFH 122
+C K+ +YQ FT G+ V + + + A L+ P++S+
Sbjct: 68 ICTQKAARNXSYQGFTKDNGVVPVVKELXGEEILGASLSAPLTSYK 113
>pdb|3KIF|A Chain A, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|B Chain B, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|C Chain C, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|D Chain D, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|E Chain E, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|F Chain F, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|G Chain G, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|H Chain H, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|I Chain I, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
pdb|3KIF|J Chain J, The Crystal Structures Of Two Fragments Truncated From
5-Bla Propeller Lectin, Tachylectin-2 (Lib1-B7-18 And
Lib2-D2-15)
Length = 106
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 90 AFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHLGEGS-AGVKFTYNHPSGYFHT 148
A +N K +Y + ++D W +AR + +G G +G KF + HP+GY +
Sbjct: 42 AVSNDK-LYKASPPQSDTDNW---IAR--------ATEIGSGGWSGFKFLFFHPNGYLYA 89
Query: 149 VK 150
V+
Sbjct: 90 VR 91
>pdb|3P24|A Chain A, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|B Chain B, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|C Chain C, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|D Chain D, Structure Of Profragilysin-3 From Bacteroides Fragilis
Length = 397
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 71 GAEVAVLCITKSGEVLNYQAFTNAKGMYTVAE 102
G E AVL ++GE ++Y A+ A+ M +AE
Sbjct: 106 GDEFAVLRFYRNGESISYIAYKEAQMMNEIAE 137
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 58 GDSSIGPE--DHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLA 115
G +IG + D + GA+ +L ++ NYQ+F N + YTV + + E +A
Sbjct: 64 GGQTIGGKMLDKYIYGAQGVLLVY----DITNYQSFENLEDWYTVVKKVSEESETQPLVA 119
>pdb|1MKE|A Chain A, Structure Of The N-Wasp Evh1 Domain-Wip Complex
Length = 152
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 137 FTYNHPSGYFHT 148
F YN P GYFHT
Sbjct: 100 FVYNSPRGYFHT 111
>pdb|1TL2|A Chain A, Tachylectin-2 From Tachypleus Tridentatus (Japanese
Horseshoe Crab)
Length = 236
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 105 PESDRWDACLARPISSFHDHCSHLGEGS-AGVKFTYNHPSGYFHTV 149
P+SD D +AR + +G G +G KF + HP+GY + V
Sbjct: 115 PQSDT-DNWIAR--------ATEVGSGGWSGFKFLFFHPNGYLYAV 151
>pdb|2IFS|A Chain A, Structure Of The N-Wasp Evh1 Domain In Complex With An
Extended Wip Peptide
Length = 169
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 137 FTYNHPSGYFHT 148
F YN P GYFHT
Sbjct: 117 FVYNSPRGYFHT 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,126,563
Number of Sequences: 62578
Number of extensions: 202169
Number of successful extensions: 389
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)