BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031177
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19963|ALL1_OLEEU Major pollen allergen Ole e 1 OS=Olea europaea PE=1 SV=2
Length = 145
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 48 IHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQ--AFTNAKGMYTVAETMP 105
I G+V CD C I + GA + + C K + + +T A+G+Y++ +
Sbjct: 13 IQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSM---LV 69
Query: 106 ESD-RWDACLARPISSFHDHCSHL---GEGSAGVKFTYNHPSGYFHTVKPF-VYRHASVP 160
E D + + C ISS C+ + G +KF N +G TV P ++ ++P
Sbjct: 70 ERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALP 129
>sp|O82015|LIGV1_LIGVU Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2
Length = 145
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 13/124 (10%)
Query: 48 IHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGE----VLNYQAFTNAKGMYTVAET 103
I G+V CD C I + GA V + C K GE +T A+G+Y +
Sbjct: 13 IQGQVYCDTCRARFITELSEFIPGAGVRLQC--KDGENGKVTFTEVGYTKAEGLYNM--- 67
Query: 104 MPESD-RWDACLARPISSFHDHCSHL---GEGSAGVKFTYNHPSGYFHTVKPFVYRHASV 159
+ E D + + C ISS C + G +KF N +G T+ P + V
Sbjct: 68 LIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEV 127
Query: 160 PTYC 163
C
Sbjct: 128 LPKC 131
>sp|Q8LGR0|CHE1_CHEAL Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1
Length = 168
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 32 LTIISFASNVEAWTG--EIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLC--ITKSGEVLN 87
L ++S A A ++ G V CD C + ++EGA V + C IT +
Sbjct: 14 LCVLSLAGVANAAENHFKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFK 73
Query: 88 YQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDHCSHL-----GEGSAGVKFTYNH 141
+A T+ G Y++ D D C + S + CS + + SA V T N+
Sbjct: 74 AEAVTDKVGQYSIPVNGDFED--DICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNN 130
>sp|A7MB70|SEM3C_BOVIN Semaphorin-3C OS=Bos taurus GN=SEMA3C PE=2 SV=1
Length = 751
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 9 FFKKSIIMESQKKKLVMGFFGFLLTIIS--FASNVEAWTGEIHGRVVCDVCGDSSIGPED 66
FFK+ + S+ K + + + S V WT + R+VC V + GPE
Sbjct: 243 FFKEKLTDNSRSTKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVTDED--GPET 300
Query: 67 HVLEGAEVAVLCITKSGEVLNYQAFTNAKGMY 98
H E +V +L + L Y FT + ++
Sbjct: 301 HFDELEDVFLLEMDNPRTTLVYGIFTTSSSVF 332
>sp|B7L2K9|RIMO_METC4 Ribosomal protein S12 methylthiotransferase RimO
OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB
13688) GN=rimO PE=3 SV=1
Length = 448
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 52 VVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWD 111
++ + GD P VL AE V K E+L T+A G+ T T P DR
Sbjct: 165 IIPSLRGDLVSRPAGDVLREAEKLVKAGVK--ELLVVSQDTSAYGIDTRYATSPWQDR-- 220
Query: 112 ACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVP 160
AR F+D S LGE A V+ Y +P + V P + +P
Sbjct: 221 EVRAR----FYDLASELGELGAWVRLHYVYPYPHVDEVIPLMAEGKILP 265
>sp|B1ZEV4|RIMO_METPB Ribosomal protein S12 methylthiotransferase RimO
OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
13946 / BJ001) GN=rimO PE=3 SV=1
Length = 448
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 52 VVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWD 111
++ + GD P VL AE V K E+L T+A G+ T T P DR
Sbjct: 165 IIPSLRGDLVSRPAGDVLREAEKLVKAGVK--ELLVVSQDTSAYGIDTRYATSPWRDR-- 220
Query: 112 ACLARPISSFHDHCSHLGEGSAGVKFTYNHPSGYFHTVKPFVYRHASVP 160
AR F+D S LGE A V+ Y +P + V P + +P
Sbjct: 221 EVRAR----FYDLASELGELGAWVRLHYVYPYPHVDEVIPLMAEGKILP 265
>sp|P33050|PSC13_MAIZE Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1
Length = 170
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 48 IHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCIT-KSGEVLN-YQAFTNAKGMYTVAETMP 105
I GRV CD C + + GA+V + C +G++ T+A G YT+ +
Sbjct: 37 IQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTI--ELK 94
Query: 106 ESDRWDACLARPISSFHDHCSHLG--EGSAGVKFTYN----------HPSGYFHTV 149
+S D C ++S C + AGV T N +P GYF V
Sbjct: 95 DSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDV 150
>sp|A5FYN6|RL9_ACICJ 50S ribosomal protein L9 OS=Acidiphilium cryptum (strain JF-5)
GN=rplI PE=3 SV=1
Length = 186
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 29 GFLLTIISFASNVEAWTGEIHGRVVCDVCGDSSIG 63
G +T+I AS+ + G + R + D CG++S+G
Sbjct: 77 GLTVTLIRQASDAGSLYGSVTSRDIADACGEASLG 111
>sp|Q488Y8|RPOA_COLP3 DNA-directed RNA polymerase subunit alpha OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=rpoA PE=3
SV=1
Length = 329
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 21/81 (25%)
Query: 68 VLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDH--C 125
+LEG AVL +TKSGE G T A+ + D +A P DH C
Sbjct: 91 ILEGKNEAVLTVTKSGE-----------GPVTAADIQHDG---DVTIANP-----DHVIC 131
Query: 126 SHLGEGSAGVKFTYNHPSGYF 146
+ GEGS ++ GY
Sbjct: 132 TLTGEGSISMRIKVEMGRGYV 152
>sp|P06538|DPOL_ADE12 DNA polymerase OS=Human adenovirus A serotype 12 GN=POL PE=3 SV=2
Length = 1061
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 2 LKITSKGFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRVVCDVCGDSS 61
L +T KG +MESQ KK + + G L+ F + T + VC CG +
Sbjct: 880 LFVTEKG----RRLMESQGKKRIKKYGGKLV----FDPSCPELTWSVECETVCSYCGADA 931
Query: 62 IGPEDHVLEGAEVAVLCI 79
PE L A+ C+
Sbjct: 932 YSPESVFLAPKLYALKCL 949
>sp|Q2GC13|DXS_NOVAD 1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1
Length = 640
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 62 IGPEDHVLEGAEVAVLCI-TKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISS 120
IG + +G++VA+L + T+ E L +A+G+ T + + D L R + +
Sbjct: 496 IGKGRIIRQGSKVALLSLGTRLAEALKAADQLDARGLSTTVADLRFAKPLDVALIRQLMT 555
Query: 121 FHDHCSHLGEGSAG 134
HD + EGS G
Sbjct: 556 THDVIVTVEEGSIG 569
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,274,161
Number of Sequences: 539616
Number of extensions: 2431589
Number of successful extensions: 4654
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4652
Number of HSP's gapped (non-prelim): 18
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)