Query 031177
Match_columns 164
No_of_seqs 106 out of 232
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01190 Pollen_Ole_e_I: Polle 99.9 1.1E-24 2.5E-29 158.1 10.3 85 48-133 1-90 (97)
2 PF13620 CarboxypepD_reg: Carb 96.0 0.0088 1.9E-07 40.7 3.6 46 47-104 1-47 (82)
3 PF01060 DUF290: Transthyretin 94.9 0.086 1.9E-06 36.9 5.5 45 49-103 1-46 (80)
4 PF13715 DUF4480: Domain of un 94.2 0.061 1.3E-06 37.2 3.3 32 66-104 12-43 (88)
5 PF11974 MG1: Alpha-2-macroglo 93.9 0.087 1.9E-06 38.4 3.9 36 65-103 24-60 (97)
6 PF10670 DUF4198: Domain of un 93.3 0.14 3E-06 40.5 4.5 42 65-106 160-203 (215)
7 KOG1948 Metalloproteinase-rela 91.7 0.72 1.6E-05 45.9 7.8 72 45-124 897-968 (1165)
8 PF05738 Cna_B: Cna protein B- 90.7 0.4 8.6E-06 31.7 3.6 32 69-101 1-32 (70)
9 cd03866 M14_CPM Peptidase M14 87.8 2.1 4.5E-05 38.3 7.0 44 46-103 295-338 (376)
10 PF08400 phage_tail_N: Prophag 86.1 1.6 3.5E-05 34.0 4.8 41 64-104 12-55 (134)
11 cd03858 M14_CP_N-E_like Carbox 85.4 1.7 3.7E-05 38.3 5.2 42 46-103 298-339 (374)
12 COG5266 CbiK ABC-type Co2+ tra 85.4 1.2 2.6E-05 38.3 4.1 39 66-104 182-230 (264)
13 PRK15036 hydroxyisourate hydro 82.8 2.2 4.8E-05 33.2 4.2 49 47-103 28-76 (137)
14 TIGR02962 hdxy_isourate hydrox 80.9 3.1 6.6E-05 31.3 4.3 39 65-103 12-50 (112)
15 KOG1948 Metalloproteinase-rela 78.9 2.5 5.4E-05 42.3 4.0 41 46-102 316-356 (1165)
16 PF07210 DUF1416: Protein of u 76.3 8.8 0.00019 27.8 5.2 45 45-102 7-51 (85)
17 PF02369 Big_1: Bacterial Ig-l 73.4 4.4 9.5E-05 29.2 3.2 39 65-104 35-76 (100)
18 PF07172 GRP: Glycine rich pro 70.8 3 6.5E-05 30.5 1.8 13 16-28 1-13 (95)
19 cd03863 M14_CPD_II The second 69.7 4.3 9.3E-05 36.4 2.9 44 46-104 297-340 (375)
20 cd03868 M14_CPD_I The first ca 67.5 5.6 0.00012 35.2 3.2 42 46-103 296-337 (372)
21 cd03865 M14_CPE_H Peptidase M1 63.8 13 0.00028 33.8 4.8 40 48-103 328-367 (402)
22 cd03461 1,2-HQD Hydroxyquinol 63.6 14 0.00031 32.0 4.9 47 46-101 121-178 (277)
23 PF08194 DIM: DIM protein; In 63.1 8.5 0.00018 23.7 2.4 19 37-57 17-35 (36)
24 COG3485 PcaH Protocatechuate 3 59.2 34 0.00073 28.9 6.2 48 45-101 72-134 (226)
25 cd06245 M14_CPD_III The third 59.1 9.8 0.00021 33.9 3.2 42 46-104 287-328 (363)
26 PF13115 YtkA: YtkA-like 58.9 33 0.00071 23.3 5.2 43 64-106 30-77 (86)
27 TIGR02465 chlorocat_1_2 chloro 55.6 34 0.00073 29.2 5.7 47 46-101 99-156 (246)
28 cd00421 intradiol_dioxygenase 50.8 60 0.0013 24.9 6.0 48 45-101 11-71 (146)
29 PF03785 Peptidase_C25_C: Pept 48.9 42 0.00092 24.1 4.4 40 64-104 9-55 (81)
30 COG4850 Uncharacterized conser 48.7 1.2E+02 0.0026 27.5 8.2 39 65-107 92-130 (373)
31 cd03867 M14_CPZ Peptidase M14- 47.3 20 0.00043 32.2 3.2 42 46-103 318-359 (395)
32 TIGR02438 catachol_actin catec 45.8 63 0.0014 28.1 5.9 47 46-101 133-190 (281)
33 PF00775 Dioxygenase_C: Dioxyg 45.5 44 0.00095 27.0 4.6 47 45-100 29-88 (183)
34 cd03864 M14_CPN Peptidase M14 45.3 61 0.0013 29.3 6.0 41 46-102 316-356 (392)
35 PF00576 Transthyretin: HIUase 44.8 49 0.0011 24.8 4.5 35 65-99 12-47 (112)
36 TIGR03361 VI_Rhs_Vgr type VI s 44.4 56 0.0012 29.8 5.7 48 69-121 358-408 (513)
37 PF13717 zinc_ribbon_4: zinc-r 44.1 16 0.00034 21.9 1.4 29 51-80 2-30 (36)
38 cd03460 1,2-CTD Catechol 1,2 d 43.4 61 0.0013 28.2 5.5 47 46-101 125-182 (282)
39 cd03459 3,4-PCD Protocatechuat 43.0 67 0.0015 25.3 5.3 48 45-101 15-78 (158)
40 cd05822 TLP_HIUase HIUase (5-h 40.6 63 0.0014 24.2 4.6 38 66-103 13-50 (112)
41 PF14289 DUF4369: Domain of un 40.1 1.2E+02 0.0026 20.7 6.8 60 38-117 4-64 (106)
42 cd03463 3,4-PCD_alpha Protocat 38.8 1E+02 0.0023 25.0 5.9 48 45-101 36-98 (185)
43 PRK15296 putative fimbrial pro 33.3 53 0.0012 25.7 3.3 18 42-59 22-39 (181)
44 TIGR01646 vgr_GE Rhs element V 31.8 56 0.0012 29.6 3.6 32 89-120 362-396 (483)
45 TIGR02422 protocat_beta protoc 31.7 1.3E+02 0.0029 25.1 5.5 48 45-101 60-123 (220)
46 PF14686 fn3_3: Polysaccharide 31.6 37 0.0008 24.5 2.0 16 86-101 40-55 (95)
47 cd03464 3,4-PCD_beta Protocate 31.1 1.8E+02 0.0039 24.3 6.2 48 45-101 65-128 (220)
48 smart00634 BID_1 Bacterial Ig- 30.8 88 0.0019 21.7 3.8 42 64-105 29-71 (92)
49 PF01835 A2M_N: MG2 domain; I 30.8 1.8E+02 0.0039 20.0 5.4 54 66-119 30-85 (99)
50 cd05469 Transthyretin_like Tra 29.9 1.2E+02 0.0027 22.8 4.6 50 66-118 13-63 (113)
51 COG2351 Transthyretin-like pro 29.9 99 0.0021 23.9 4.1 34 66-99 21-54 (124)
52 TIGR02513 type_III_yscB type I 29.7 50 0.0011 26.0 2.5 14 91-104 17-30 (139)
53 TIGR02439 catechol_proteo cate 29.7 1.7E+02 0.0037 25.5 6.0 47 46-101 129-186 (285)
54 TIGR02423 protocat_alph protoc 28.4 1.7E+02 0.0036 24.0 5.5 48 45-101 39-102 (193)
55 smart00095 TR_THY Transthyreti 28.2 1.4E+02 0.003 22.9 4.7 35 65-99 15-50 (121)
56 cd03458 Catechol_intradiol_dio 28.0 1.3E+02 0.0029 25.8 5.0 47 46-101 105-162 (256)
57 cd05821 TLP_Transthyretin Tran 27.3 1.4E+02 0.0031 22.8 4.6 35 66-100 19-54 (121)
58 cd03462 1,2-CCD chlorocatechol 26.9 1.9E+02 0.0042 24.6 5.8 47 46-101 100-157 (247)
59 PRK02693 apocytochrome f; Revi 26.8 44 0.00095 29.4 1.9 36 25-60 10-55 (312)
60 smart00557 IG_FLMN Filamin-typ 25.9 2.1E+02 0.0046 19.8 5.1 30 74-103 46-75 (93)
61 COG5341 Uncharacterized protei 25.6 69 0.0015 25.0 2.6 15 23-37 16-30 (132)
62 PRK15209 long polar fimbrial p 24.4 1.3E+02 0.0028 23.3 4.1 24 37-60 19-42 (174)
63 PF12171 zf-C2H2_jaz: Zinc-fin 23.9 38 0.00082 18.4 0.7 12 53-64 3-14 (27)
64 PF12973 Cupin_7: ChrR Cupin-l 21.7 1.2E+02 0.0026 20.9 3.1 34 66-99 29-63 (91)
65 PF03983 SHD1: SLA1 homology d 21.1 45 0.00097 23.3 0.7 29 89-120 13-41 (70)
66 PRK15289 lpfA fimbrial protein 20.7 1.7E+02 0.0036 23.1 4.1 21 40-60 22-42 (190)
67 KOG4309 Transcription mediator 20.2 60 0.0013 26.9 1.4 71 3-79 75-147 (217)
No 1
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=99.92 E-value=1.1e-24 Score=158.14 Aligned_cols=85 Identities=24% Similarity=0.431 Sum_probs=74.4
Q ss_pred EEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc-eEEEEEEEcCCCeeEEEEccCC----CCCCcCceEEEEeeCCC
Q 031177 48 IHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG-EVLNYQAFTNAKGMYTVAETMP----ESDRWDACLARPISSFH 122 (164)
Q Consensus 48 V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~-~~~~~ea~TD~~G~F~I~vp~~----~~d~~~~C~V~LvsSp~ 122 (164)
|+|.||||+|+. +++..++||+||+|+|+|+++++ ..+..+++||++|+|+|++|++ +....+.|.|+|++||+
T Consensus 1 V~G~V~C~~C~~-~~~~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~sp~ 79 (97)
T PF01190_consen 1 VEGVVYCDDCSS-GFSRAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSSPD 79 (97)
T ss_pred CEEEEEeCCCCC-CccccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCCCc
Confidence 799999999999 44488999999999999999854 5678899999999999999984 23456899999999999
Q ss_pred CCCCCCCCCCc
Q 031177 123 DHCSHLGEGSA 133 (164)
Q Consensus 123 ~~Cn~~~~~~~ 133 (164)
+.|+++++.++
T Consensus 80 ~~C~~~~~~~~ 90 (97)
T PF01190_consen 80 PSCNVPTNSNG 90 (97)
T ss_pred CcCCCCcCCCC
Confidence 99999998643
No 2
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=96.02 E-value=0.0088 Score=40.66 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=29.1
Q ss_pred eEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEE-ccC
Q 031177 47 EIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVA-ETM 104 (164)
Q Consensus 47 ~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~-vp~ 104 (164)
.|.|+|.= ....||+||.|.|.=.+... ...+.||++|.|.++ +|.
T Consensus 1 tI~G~V~d---------~~g~pv~~a~V~l~~~~~~~---~~~~~Td~~G~f~~~~l~~ 47 (82)
T PF13620_consen 1 TISGTVTD---------ATGQPVPGATVTLTDQDGGT---VYTTTTDSDGRFSFEGLPP 47 (82)
T ss_dssp -EEEEEEE---------TTSCBHTT-EEEET--TTTE---CCEEE--TTSEEEEEEE-S
T ss_pred CEEEEEEc---------CCCCCcCCEEEEEEEeeCCC---EEEEEECCCceEEEEccCC
Confidence 36777763 13569999999998765422 356899999999998 764
No 3
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=94.91 E-value=0.086 Score=36.87 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=35.3
Q ss_pred EEEEEcccCCCCCCCCCceecCCCeEEEEeecC-CceEEEEEEEcCCCeeEEEEcc
Q 031177 49 HGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITK-SGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 49 ~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~-~~~~~~~ea~TD~~G~F~I~vp 103 (164)
.|+..| +..|.+|++|.|-=+|. .....-.+..||++|.|.|.=-
T Consensus 1 ~G~L~C----------~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~ 46 (80)
T PF01060_consen 1 KGQLMC----------GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGS 46 (80)
T ss_pred CeEEEe----------CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEE
Confidence 377778 57889999999988886 3344455789999999999744
No 4
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=94.16 E-value=0.061 Score=37.17 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=25.6
Q ss_pred ceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccC
Q 031177 66 DHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETM 104 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~ 104 (164)
..||+||.|.+.=.+ ..+.||++|.|.|.+|.
T Consensus 12 ~~pl~~a~V~~~~~~-------~~~~Td~~G~F~i~~~~ 43 (88)
T PF13715_consen 12 GEPLPGATVYLKNTK-------KGTVTDENGRFSIKLPE 43 (88)
T ss_pred CCCccCeEEEEeCCc-------ceEEECCCeEEEEEEcC
Confidence 579999999987222 34689999999999874
No 5
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=93.94 E-value=0.087 Score=38.36 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=27.6
Q ss_pred CceecCCCeEEEEeec-CCceEEEEEEEcCCCeeEEEEcc
Q 031177 65 EDHVLEGAEVAVLCIT-KSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 65 ~s~~I~GA~V~V~Ck~-~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
-..|++||+|.| .+ .++.+ -.+++||++|...++..
T Consensus 24 tg~Pv~ga~V~l--~~~~~~~~-l~~g~TD~~G~a~~~~~ 60 (97)
T PF11974_consen 24 TGKPVAGAEVEL--YDSRNGQV-LASGKTDADGFASFDST 60 (97)
T ss_pred CCCccCCCEEEE--EECCCCcE-eeeeeeCCCceEEecCC
Confidence 477999999999 44 33333 35789999999999765
No 6
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=93.33 E-value=0.14 Score=40.54 Aligned_cols=42 Identities=26% Similarity=0.195 Sum_probs=33.7
Q ss_pred CceecCCCeEEEEeecCCceE--EEEEEEcCCCeeEEEEccCCC
Q 031177 65 EDHVLEGAEVAVLCITKSGEV--LNYQAFTNAKGMYTVAETMPE 106 (164)
Q Consensus 65 ~s~~I~GA~V~V~Ck~~~~~~--~~~ea~TD~~G~F~I~vp~~~ 106 (164)
...|++||+|.+.-.+..... ...+.+||++|.+.|.++..+
T Consensus 160 ~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G 203 (215)
T PF10670_consen 160 DGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPG 203 (215)
T ss_pred CCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCE
Confidence 478999999999999873322 256789999999999988644
No 7
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=0.72 Score=45.86 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=51.0
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccCCCCCCcCceEEEEeeCCCCC
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPISSFHDH 124 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~~~~d~~~~C~V~LvsSp~~~ 124 (164)
.++.+|+-.=-+|.-.-.+....|..| |.||=...+-..+..|++||++|.|+|. +.+++ |.-.+.-++..+
T Consensus 897 ~vvl~gkRvAySayGtvssLsGdp~~g--VaieA~sdn~~~y~eeattdenG~yRiR--GL~Pd----c~Y~V~vk~~~~ 968 (1165)
T KOG1948|consen 897 NVVLKGKRVAYSAYGTVSSLSGDPMKG--VAIEALSDNCDLYQEEATTDENGTYRIR--GLLPD----CEYQVHVKSYAD 968 (1165)
T ss_pred EEEEEEEEEEEEeeeehhhccCCcccC--eEEEEecCCCCccccccccccCCcEEEe--ccCCC----ceEEEEEeeccC
Confidence 347788877777765544566777777 5666666544556678999999999995 44444 888877777655
No 8
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=90.68 E-value=0.4 Score=31.71 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=23.8
Q ss_pred cCCCeEEEEeecCCceEEEEEEEcCCCeeEEEE
Q 031177 69 LEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVA 101 (164)
Q Consensus 69 I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~ 101 (164)
|+||++.|.-.+... ....+.+||++|.|.++
T Consensus 1 L~Ga~f~L~~~~~~~-~~~~~~~Td~~G~~~f~ 32 (70)
T PF05738_consen 1 LAGATFELYDEDGNE-VIEVTVTTDENGKYTFK 32 (70)
T ss_dssp -STEEEEEEETTSEE-EEEEEEEGGTTSEEEEE
T ss_pred CCCeEEEEEECCCCE-EEEEEEEECCCCEEEEe
Confidence 689999998777522 22226899999999987
No 9
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=87.80 E-value=2.1 Score=38.31 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=31.9
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
.-|.|.|. |. . ..||+||+|.|+ +.+ .....+||++|.|...++
T Consensus 295 ~gI~G~V~-D~--~------g~pi~~A~V~v~--g~~---~~~~~~T~~~G~y~~~l~ 338 (376)
T cd03866 295 LGVKGQVF-DS--N------GNPIPNAIVEVK--GRK---HICPYRTNVNGEYFLLLL 338 (376)
T ss_pred CceEEEEE-CC--C------CCccCCeEEEEE--cCC---ceeEEEECCCceEEEecC
Confidence 46999998 53 1 259999999997 211 123458999999987665
No 10
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=86.13 E-value=1.6 Score=34.05 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=32.3
Q ss_pred CCceecCCCeEEEEeecCCceE-E--EEEEEcCCCeeEEEEccC
Q 031177 64 PEDHVLEGAEVAVLCITKSGEV-L--NYQAFTNAKGMYTVAETM 104 (164)
Q Consensus 64 ~~s~~I~GA~V~V~Ck~~~~~~-~--~~ea~TD~~G~F~I~vp~ 104 (164)
....|++|+.+.|.=+.....+ + .....||++|.|.+++..
T Consensus 12 g~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~ep 55 (134)
T PF08400_consen 12 GAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEP 55 (134)
T ss_pred CCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecC
Confidence 4578999999999988874433 3 346699999999999863
No 11
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=85.44 E-value=1.7 Score=38.33 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=32.0
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
..|.|+|.-. ...||+||+|.|+ . ......||++|.|.+.+|
T Consensus 298 ~~i~G~V~d~---------~g~pl~~A~V~i~--~-----~~~~~~Td~~G~f~~~l~ 339 (374)
T cd03858 298 RGIKGFVRDA---------NGNPIANATISVE--G-----INHDVTTAEDGDYWRLLL 339 (374)
T ss_pred CceEEEEECC---------CCCccCCeEEEEe--c-----ceeeeEECCCceEEEecC
Confidence 3799999763 1359999999993 1 124568999999999886
No 12
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=85.41 E-value=1.2 Score=38.35 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=28.8
Q ss_pred ceecCCCeEEEEeec----------CCceEEEEEEEcCCCeeEEEEccC
Q 031177 66 DHVLEGAEVAVLCIT----------KSGEVLNYQAFTNAKGMYTVAETM 104 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~----------~~~~~~~~ea~TD~~G~F~I~vp~ 104 (164)
.+|||||+|.++=-+ .+++.......||.+|+|.+..+-
T Consensus 182 GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r 230 (264)
T COG5266 182 GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLR 230 (264)
T ss_pred CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEcc
Confidence 789999999999433 122333456799999999997554
No 13
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=82.79 E-value=2.2 Score=33.16 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=35.3
Q ss_pred eEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 47 EIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 47 ~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
.|.|.|. -+....|.+|.+|+|+=.+.++...-.++.||++|.|+..++
T Consensus 28 ~Is~HVL--------Dt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~ 76 (137)
T PRK15036 28 ILSVHIL--------NQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWP 76 (137)
T ss_pred CeEEEEE--------eCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccC
Confidence 5888876 234578999999999754433334456889999999986444
No 14
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=80.86 E-value=3.1 Score=31.32 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=29.8
Q ss_pred CceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 65 EDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 65 ~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
.-.|-+|..|.|...+.++...-.+++||++|...-.++
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~ 50 (112)
T TIGR02962 12 SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLP 50 (112)
T ss_pred CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCccc
Confidence 456889999999988765545556899999999874343
No 15
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=78.95 E-value=2.5 Score=42.26 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=30.1
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEc
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAE 102 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~v 102 (164)
|.|.|+|. .+.++.+++||+|.|.=+- .++||+.|+|++|=
T Consensus 316 fSvtGRVl--------~g~~g~~l~gvvvlvngk~--------~~kTdaqGyykLen 356 (1165)
T KOG1948|consen 316 FSVTGRVL--------VGSKGLPLSGVVVLVNGKS--------GGKTDAQGYYKLEN 356 (1165)
T ss_pred EEeeeeEE--------eCCCCCCccceEEEEcCcc--------cceEcccceEEeee
Confidence 47788885 2457889999999985433 46788888887764
No 16
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=76.25 E-value=8.8 Score=27.85 Aligned_cols=45 Identities=29% Similarity=0.395 Sum_probs=34.4
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEc
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAE 102 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~v 102 (164)
..+|+|+|- ....|++||.|+|- |..+ .|..|..|+++|.|+.-.
T Consensus 7 e~VItG~V~----------~~G~Pv~gAyVRLL--D~sg-EFtaEvvts~~G~FRFfa 51 (85)
T PF07210_consen 7 ETVITGRVT----------RDGEPVGGAYVRLL--DSSG-EFTAEVVTSATGDFRFFA 51 (85)
T ss_pred eEEEEEEEe----------cCCcCCCCeEEEEE--cCCC-CeEEEEEecCCccEEEEe
Confidence 457899986 23679999999995 4433 457889999999999653
No 17
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=73.38 E-value=4.4 Score=29.22 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=23.3
Q ss_pred CceecCCCeEEEEeecCCceEEE-E--EEEcCCCeeEEEEccC
Q 031177 65 EDHVLEGAEVAVLCITKSGEVLN-Y--QAFTNAKGMYTVAETM 104 (164)
Q Consensus 65 ~s~~I~GA~V~V~Ck~~~~~~~~-~--ea~TD~~G~F~I~vp~ 104 (164)
+..||+|..|...=.. .+..+. . .+.||++|.+.+.+.+
T Consensus 35 ~gnpv~g~~V~f~~~~-~~~~l~~~~~~~~Td~~G~a~~tlts 76 (100)
T PF02369_consen 35 NGNPVPGQPVTFSSSS-SGGTLSPTNTSATTDSNGIATVTLTS 76 (100)
T ss_dssp TSEB-TS-EEEE--EE-SSSEES-CEE-EEE-TTSEEEEEEE-
T ss_pred CCCCCCCCEEEEEEcC-CCcEEecCccccEECCCEEEEEEEEe
Confidence 4689999999991111 222332 2 5799999999999876
No 18
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.82 E-value=3 Score=30.53 Aligned_cols=13 Identities=23% Similarity=0.107 Sum_probs=8.7
Q ss_pred eecchhhHHHHHH
Q 031177 16 MESQKKKLVMGFF 28 (164)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (164)
|+||.+.||-+||
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8988866655544
No 19
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=69.75 E-value=4.3 Score=36.36 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=32.4
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccC
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETM 104 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~ 104 (164)
..|.|.|.=. ..-.||+||+|.|.=.+ .-.+||.+|.|.+.||.
T Consensus 297 ~gI~G~V~D~--------~~g~pl~~AtV~V~g~~-------~~~~Td~~G~f~~~l~p 340 (375)
T cd03863 297 RGVRGFVLDA--------TDGRGILNATISVADIN-------HPVTTYKDGDYWRLLVP 340 (375)
T ss_pred CeEEEEEEeC--------CCCCCCCCeEEEEecCc-------CceEECCCccEEEccCC
Confidence 6899999631 12469999999996211 24589999999998774
No 20
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=67.47 E-value=5.6 Score=35.22 Aligned_cols=42 Identities=21% Similarity=0.089 Sum_probs=30.7
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
..|.|.|.= ....||+||+|.|+-.+ ...+||++|.|...||
T Consensus 296 ~~i~G~V~d---------~~g~pv~~A~V~v~~~~-------~~~~td~~G~y~~~l~ 337 (372)
T cd03868 296 IGVKGFVRD---------ASGNPIEDATIMVAGID-------HNVTTAKFGDYWRLLL 337 (372)
T ss_pred CceEEEEEc---------CCCCcCCCcEEEEEecc-------cceEeCCCceEEecCC
Confidence 568888852 12369999999997433 2469999999986665
No 21
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=63.77 E-value=13 Score=33.79 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=29.4
Q ss_pred EEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 48 IHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 48 V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
|.|.|.-. ...||+||+|.|+=.+ ...+||++|.|...+|
T Consensus 328 I~G~V~D~---------~g~pI~~AtV~V~g~~-------~~~~T~~~G~Y~~~L~ 367 (402)
T cd03865 328 VKGFVKDL---------QGNPIANATISVEGID-------HDITSAKDGDYWRLLA 367 (402)
T ss_pred eEEEEECC---------CCCcCCCeEEEEEcCc-------cccEECCCeeEEECCC
Confidence 89999652 1258999999998211 2348999999998655
No 22
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=63.56 E-value=14 Score=31.95 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=32.2
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc---------eEE--EEEEEcCCCeeEEEE
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG---------EVL--NYQAFTNAKGMYTVA 101 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~---------~~~--~~ea~TD~~G~F~I~ 101 (164)
+.|.|+|. |. ...||+||.|-|=--|..+ ..+ +....||++|.|...
T Consensus 121 l~v~G~V~-D~--------~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~ 178 (277)
T cd03461 121 CFVHGRVT-DT--------DGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFR 178 (277)
T ss_pred EEEEEEEE-cC--------CCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence 47788887 42 2369999999997766522 122 335589999998764
No 23
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=63.10 E-value=8.5 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=13.0
Q ss_pred hccccccccceEEEEEEcccC
Q 031177 37 FASNVEAWTGEIHGRVVCDVC 57 (164)
Q Consensus 37 ~~~~~~a~~~~V~G~VyCD~C 57 (164)
.|..+.+.+++|.|. |..|
T Consensus 17 ~a~~~~pG~ViING~--C~dC 35 (36)
T PF08194_consen 17 AAVPATPGNVIINGK--CIDC 35 (36)
T ss_pred hcccCCCCeEEECce--eeeC
Confidence 444466778888885 6666
No 24
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.22 E-value=34 Score=28.87 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=34.1
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEE-EeecCCceE------------E--EEEEEcCCCeeEEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAV-LCITKSGEV------------L--NYQAFTNAKGMYTVA 101 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V-~Ck~~~~~~------------~--~~ea~TD~~G~F~I~ 101 (164)
.+.|+|+|+=.. -.|++||.|.| +|...+.-. + +....||++|.|...
T Consensus 72 ~i~l~G~VlD~~---------G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~ 134 (226)
T COG3485 72 RILLEGRVLDGN---------GRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFR 134 (226)
T ss_pred eEEEEEEEECCC---------CCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEE
Confidence 569999998433 56899999998 666542111 2 234589999999864
No 25
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=59.09 E-value=9.8 Score=33.88 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=31.6
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccC
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETM 104 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~ 104 (164)
..|.|.|. |. . ..||+||+|.|. . . . ...||++|.|.+.+|.
T Consensus 287 ~gI~G~V~-d~--~------g~pi~~A~V~v~--g--~---~-~~~T~~~G~y~~~L~p 328 (363)
T cd06245 287 KGVHGVVT-DK--A------GKPISGATIVLN--G--G---H-RVYTKEGGYFHVLLAP 328 (363)
T ss_pred cEEEEEEE-cC--C------CCCccceEEEEe--C--C---C-ceEeCCCcEEEEecCC
Confidence 57999996 32 1 368999999997 1 1 1 3579999999998763
No 26
>PF13115 YtkA: YtkA-like
Probab=58.85 E-value=33 Score=23.32 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCceecCCCeEEEEeecCC--ce---EEEEEEEcCCCeeEEEEccCCC
Q 031177 64 PEDHVLEGAEVAVLCITKS--GE---VLNYQAFTNAKGMYTVAETMPE 106 (164)
Q Consensus 64 ~~s~~I~GA~V~V~Ck~~~--~~---~~~~ea~TD~~G~F~I~vp~~~ 106 (164)
....|+.||.|.++-.-.. ++ ....+....+.|.|.+++...+
T Consensus 30 ~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m 77 (86)
T PF13115_consen 30 QGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSM 77 (86)
T ss_pred CCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCC
Confidence 4578999999999998863 22 2344555579999999977643
No 27
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=55.62 E-value=34 Score=29.17 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=32.4
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc---------e--EEEEEEEcCCCeeEEEE
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG---------E--VLNYQAFTNAKGMYTVA 101 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~---------~--~~~~ea~TD~~G~F~I~ 101 (164)
+.|.|+|. |. ...||+||.|-|=--|.++ . -++....||++|.|...
T Consensus 99 l~v~G~V~-D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~ 156 (246)
T TIGR02465 99 LLIRGTVR-DL--------SGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVR 156 (246)
T ss_pred EEEEEEEE-cC--------CCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEE
Confidence 57778887 42 2369999999997766522 1 12345589999999864
No 28
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=50.79 E-value=60 Score=24.94 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=34.1
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc-----------e--EEEEEEEcCCCeeEEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG-----------E--VLNYQAFTNAKGMYTVA 101 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~-----------~--~~~~ea~TD~~G~F~I~ 101 (164)
.+.|.|+|. |. ...|++||.|.|---|..+ . -.+....||++|.|.+.
T Consensus 11 ~l~l~G~V~-D~--------~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ 71 (146)
T cd00421 11 PLTLTGTVL-DG--------DGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFR 71 (146)
T ss_pred EEEEEEEEE-CC--------CCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEE
Confidence 468899998 32 3468999999998777621 0 12345699999999865
No 29
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=48.94 E-value=42 Score=24.12 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCceecCCCeEEEEee-cCC------ceEEEEEEEcCCCeeEEEEccC
Q 031177 64 PEDHVLEGAEVAVLCI-TKS------GEVLNYQAFTNAKGMYTVAETM 104 (164)
Q Consensus 64 ~~s~~I~GA~V~V~Ck-~~~------~~~~~~ea~TD~~G~F~I~vp~ 104 (164)
+++.++.=+.+.|+|- ++. +..+...+.+| .|.+.|.++.
T Consensus 9 Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~-sG~ati~l~~ 55 (81)
T PF03785_consen 9 PASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVN-SGNATINLTN 55 (81)
T ss_dssp -SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-B-TTEEEEE-SS
T ss_pred cccccccccEEEEEecCCCcEEEEecCCEEEEEEEec-CceEEEECCc
Confidence 5667777788888888 552 23445578999 9999999994
No 30
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=48.72 E-value=1.2e+02 Score=27.46 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=27.7
Q ss_pred CceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccCCCC
Q 031177 65 EDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPES 107 (164)
Q Consensus 65 ~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~~~~ 107 (164)
.+..++|..|.++=++ +. +..+.||.+|+|.|..-.++.
T Consensus 92 ls~ev~~vpV~~T~~~--~~--tv~~~Td~~Gyf~i~~~~~~~ 130 (373)
T COG4850 92 LSDEVPNVPVYVTLKN--GA--TVNVATDDEGYFIIHAVIPFP 130 (373)
T ss_pred ccccCCCceEEEecCC--Cc--eEEeEecCCCceEEEEecccC
Confidence 3556888877776554 22 346799999999998766553
No 31
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=47.27 E-value=20 Score=32.19 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=30.7
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
..|.|.|.=. ...||+||+|.|+ +. ....+||++|.|...+|
T Consensus 318 ~~i~G~V~D~---------~g~pi~~A~V~v~--g~-----~~~~~Td~~G~y~~~l~ 359 (395)
T cd03867 318 RGIKGFVKDK---------DGNPIKGARISVR--GI-----RHDITTAEDGDYWRLLP 359 (395)
T ss_pred ceeEEEEEcC---------CCCccCCeEEEEe--cc-----ccceEECCCceEEEecC
Confidence 3689999631 2379999999996 21 23468999999986655
No 32
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=45.85 E-value=63 Score=28.12 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=31.2
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCce---------E--EEEEEEcCCCeeEEEE
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGE---------V--LNYQAFTNAKGMYTVA 101 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~---------~--~~~ea~TD~~G~F~I~ 101 (164)
+.|.|+|. |. ...||+||.|-|=.-|..+. . ++....||++|.|...
T Consensus 133 l~v~G~V~-D~--------~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~ 190 (281)
T TIGR02438 133 LVFSGQVT-DL--------DGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEIT 190 (281)
T ss_pred EEEEEEEE-cC--------CCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence 47778887 31 13699999999955554221 1 2345689999998754
No 33
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=45.47 E-value=44 Score=27.00 Aligned_cols=47 Identities=30% Similarity=0.398 Sum_probs=31.8
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEE-EeecCC---c---------eEEEEEEEcCCCeeEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAV-LCITKS---G---------EVLNYQAFTNAKGMYTV 100 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V-~Ck~~~---~---------~~~~~ea~TD~~G~F~I 100 (164)
.+.|.|+|+ |. .-.||+||.|-| +|-..+ . ..++....||++|.|..
T Consensus 29 ~l~l~G~V~-D~--------~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f 88 (183)
T PF00775_consen 29 PLVLHGRVI-DT--------DGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSF 88 (183)
T ss_dssp EEEEEEEEE-ET--------TSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEE
T ss_pred EEEEEEEEE-CC--------CCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEE
Confidence 569999999 41 136999999999 887651 1 12455668999999974
No 34
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=45.28 E-value=61 Score=29.27 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=28.8
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEc
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAE 102 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~v 102 (164)
..|.|.|.-. ...||+||+|.|+ .. ....+||++|.|.-.+
T Consensus 316 ~gI~G~V~D~---------~g~pi~~A~V~v~--g~-----~~~~~T~~~G~y~r~l 356 (392)
T cd03864 316 QGIKGMVTDE---------NNNGIANAVISVS--GI-----SHDVTSGTLGDYFRLL 356 (392)
T ss_pred CeEEEEEECC---------CCCccCCeEEEEE--CC-----ccceEECCCCcEEecC
Confidence 4799999752 1369999999995 21 1246899999994333
No 35
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=44.82 E-value=49 Score=24.80 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=25.7
Q ss_pred CceecCCCeEEEEeec-CCceEEEEEEEcCCCeeEE
Q 031177 65 EDHVLEGAEVAVLCIT-KSGEVLNYQAFTNAKGMYT 99 (164)
Q Consensus 65 ~s~~I~GA~V~V~Ck~-~~~~~~~~ea~TD~~G~F~ 99 (164)
.-.|-+|..|+|.=.+ ..+...-.+++||++|...
T Consensus 12 ~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~ 47 (112)
T PF00576_consen 12 TGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIK 47 (112)
T ss_dssp TTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEES
T ss_pred CCCCccCCEEEEEEecCCCCcEEEEEEEECCCCccc
Confidence 4578899999998777 3455556789999999885
No 36
>TIGR03361 VI_Rhs_Vgr type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
Probab=44.44 E-value=56 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=35.4
Q ss_pred cCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccCCC---CCCcCceEEEEeeCC
Q 031177 69 LEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPE---SDRWDACLARPISSF 121 (164)
Q Consensus 69 I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~~~---~d~~~~C~V~LvsSp 121 (164)
|+|...++.....+. +..||+.|.++|.+|-+. .++.++|.+++...-
T Consensus 358 i~G~q~A~V~g~~~~-----~i~~D~~GRvkV~f~wd~~~~~~~~~S~wvRvaqp~ 408 (513)
T TIGR03361 358 IDGPQTATVVGPAGE-----EIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQPW 408 (513)
T ss_pred CCCCeEEEEECCCCC-----EEeECCCCCEEEEecccCCCCCCCCCceEEEecccc
Confidence 778777777765432 456999999999999852 234578999998643
No 37
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=44.06 E-value=16 Score=21.92 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=22.2
Q ss_pred EEEcccCCCCCCCCCceecCCCeEEEEeec
Q 031177 51 RVVCDVCGDSSIGPEDHVLEGAEVAVLCIT 80 (164)
Q Consensus 51 ~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~ 80 (164)
.+-|+.|...+.-. ..-||+..+.|+|..
T Consensus 2 ~i~Cp~C~~~y~i~-d~~ip~~g~~v~C~~ 30 (36)
T PF13717_consen 2 IITCPNCQAKYEID-DEKIPPKGRKVRCSK 30 (36)
T ss_pred EEECCCCCCEEeCC-HHHCCCCCcEEECCC
Confidence 47899999987644 334888888999975
No 38
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=43.43 E-value=61 Score=28.22 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=32.1
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc---------eEE--EEEEEcCCCeeEEEE
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG---------EVL--NYQAFTNAKGMYTVA 101 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~---------~~~--~~ea~TD~~G~F~I~ 101 (164)
+.|.|+|. |. ...||+||.|-|=.-|..+ ..+ +....||++|.|...
T Consensus 125 l~l~G~V~-D~--------~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~ 182 (282)
T cd03460 125 LVMHGTVT-DT--------DGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFR 182 (282)
T ss_pred EEEEEEEE-CC--------CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEE
Confidence 47778887 42 2359999999998777622 122 234589999998753
No 39
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=43.00 E-value=67 Score=25.33 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=33.8
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc--------------eEEE--EEEEcCCCeeEEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG--------------EVLN--YQAFTNAKGMYTVA 101 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~--------------~~~~--~ea~TD~~G~F~I~ 101 (164)
.+.|+|+|. |. .-.||+||.|.|=--|..+ ..+. ....||++|.|.+.
T Consensus 15 ~l~l~g~V~-D~--------~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~ 78 (158)
T cd03459 15 RIILEGRVL-DG--------DGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFR 78 (158)
T ss_pred EEEEEEEEE-CC--------CCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEE
Confidence 468999998 21 2359999999997776521 1222 24589999999865
No 40
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=40.64 E-value=63 Score=24.21 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=27.7
Q ss_pred ceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 66 DHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
..|-+|..|.|.=.+..+...-.+++||++|...--++
T Consensus 13 G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~ 50 (112)
T cd05822 13 GKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLP 50 (112)
T ss_pred CcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCccc
Confidence 45778888888766654445556899999999875444
No 41
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=40.13 E-value=1.2e+02 Score=20.74 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=37.6
Q ss_pred cccccc-ccceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCceEEEEEEEcCCCeeEEEEccCCCCCCcCceEEE
Q 031177 38 ASNVEA-WTGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYTVAETMPESDRWDACLAR 116 (164)
Q Consensus 38 ~~~~~a-~~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp~~~~d~~~~C~V~ 116 (164)
++++.+ ..++|+|.+ ...-.|.+|-|.=.+.+. ........+ +|.|.+..+-++. ..+.
T Consensus 4 ~sc~q~~~~~~I~G~i-------------~~~~~~~~vyL~~~~~~~-~~~ds~~v~-nG~F~f~~~~~~p-----~~~~ 63 (106)
T PF14289_consen 4 SSCAQQAKQFTIEGKI-------------KGLPDGDKVYLYYYDNGK-VVIDSVVVK-NGKFSFKGPLDEP-----GFYY 63 (106)
T ss_pred EEeCCCCCcEEEEEEE-------------cCCCCCCEEEEEEeCCCC-EEEEEEEEe-CCEEEEEEeCCCC-----EEEE
Confidence 343333 678888876 112378899998886533 333344555 9999988775442 5555
Q ss_pred E
Q 031177 117 P 117 (164)
Q Consensus 117 L 117 (164)
|
T Consensus 64 l 64 (106)
T PF14289_consen 64 L 64 (106)
T ss_pred E
Confidence 6
No 42
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=38.77 E-value=1e+02 Score=24.96 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=33.8
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc-------------eEEE--EEEEcCCCeeEEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG-------------EVLN--YQAFTNAKGMYTVA 101 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~-------------~~~~--~ea~TD~~G~F~I~ 101 (164)
.+.|.|+|. |. .-.||+||.|-|=.-|..+ ..+. ....||++|.|...
T Consensus 36 ~l~l~G~V~-D~--------~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~ 98 (185)
T cd03463 36 RITLEGRVY-DG--------DGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFT 98 (185)
T ss_pred EEEEEEEEE-CC--------CCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEE
Confidence 468999998 32 1369999999997777521 1222 23579999999865
No 43
>PRK15296 putative fimbrial protein SthA; Provisional
Probab=33.34 E-value=53 Score=25.72 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=14.7
Q ss_pred ccccceEEEEEEcccCCC
Q 031177 42 EAWTGEIHGRVVCDVCGD 59 (164)
Q Consensus 42 ~a~~~~V~G~VyCD~C~~ 59 (164)
.+.++.+.|.|.=.+|.-
T Consensus 22 a~~~I~f~G~I~~~tC~v 39 (181)
T PRK15296 22 AQNTITFNGKIYDQACTV 39 (181)
T ss_pred cCCeEEEEEEEecCccEE
Confidence 334899999999889985
No 44
>TIGR01646 vgr_GE Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.
Probab=31.76 E-value=56 Score=29.59 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEcCCCeeEEEEccCCCC---CCcCceEEEEeeC
Q 031177 89 QAFTNAKGMYTVAETMPES---DRWDACLARPISS 120 (164)
Q Consensus 89 ea~TD~~G~F~I~vp~~~~---d~~~~C~V~LvsS 120 (164)
+..+|+.|.++|.+|-+.. ++.++|.+++...
T Consensus 362 ~~~~d~~GRvkV~f~wd~~~~~~~~~S~W~Rvaqp 396 (483)
T TIGR01646 362 EIHTDKYGRIRVHFHWDRYGQSNDYSSCWIRVAQP 396 (483)
T ss_pred eeccCCCCcEEEEeecCCCCCCCCCCceEEEEecc
Confidence 4459999999999998542 3346899999864
No 45
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.69 E-value=1.3e+02 Score=25.13 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=33.0
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc--------------eEE--EEEEEcCCCeeEEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG--------------EVL--NYQAFTNAKGMYTVA 101 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~--------------~~~--~~ea~TD~~G~F~I~ 101 (164)
.+.|+|+|. |. .-.||+||.|.|=--|..+ ..+ +....||++|.|.+.
T Consensus 60 ~i~l~G~V~-D~--------~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~ 123 (220)
T TIGR02422 60 RIIVHGRVL-DE--------DGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFR 123 (220)
T ss_pred EEEEEEEEE-CC--------CCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEE
Confidence 378999998 42 1369999999996655421 012 234579999998864
No 46
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=31.55 E-value=37 Score=24.54 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=9.7
Q ss_pred EEEEEEcCCCeeEEEE
Q 031177 86 LNYQAFTNAKGMYTVA 101 (164)
Q Consensus 86 ~~~ea~TD~~G~F~I~ 101 (164)
+.+.+.||++|.|.|+
T Consensus 40 yqYwt~td~~G~Fti~ 55 (95)
T PF14686_consen 40 YQYWTRTDSDGNFTIP 55 (95)
T ss_dssp -EEEEE--TTSEEE--
T ss_pred CcEEEEeCCCCcEEeC
Confidence 4567899999999995
No 47
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.11 E-value=1.8e+02 Score=24.35 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=33.2
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc--------------eEE--EEEEEcCCCeeEEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG--------------EVL--NYQAFTNAKGMYTVA 101 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~--------------~~~--~~ea~TD~~G~F~I~ 101 (164)
.+.|.|+|+ |. .-.||+||.|.|=--|..+ ..+ +....||++|.|.+.
T Consensus 65 ~i~l~G~V~-D~--------~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~ 128 (220)
T cd03464 65 RIIVHGRVL-DE--------DGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFR 128 (220)
T ss_pred EEEEEEEEE-CC--------CCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEE
Confidence 378999998 41 2359999999997666522 012 234489999998864
No 48
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=30.83 E-value=88 Score=21.73 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCceecCCCeEEEEeecCCceEE-EEEEEcCCCeeEEEEccCC
Q 031177 64 PEDHVLEGAEVAVLCITKSGEVL-NYQAFTNAKGMYTVAETMP 105 (164)
Q Consensus 64 ~~s~~I~GA~V~V~Ck~~~~~~~-~~ea~TD~~G~F~I~vp~~ 105 (164)
....|+||++|.++=.......+ .....||++|...+.+.+.
T Consensus 29 ~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~ 71 (92)
T smart00634 29 ANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTST 71 (92)
T ss_pred CCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECC
Confidence 34678999887766543321111 2356899999999988753
No 49
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=30.76 E-value=1.8e+02 Score=20.02 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=33.5
Q ss_pred ceecCCCeEEEEeecCCc-eEEEEEE-EcCCCeeEEEEccCCCCCCcCceEEEEee
Q 031177 66 DHVLEGAEVAVLCITKSG-EVLNYQA-FTNAKGMYTVAETMPESDRWDACLARPIS 119 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~~~~-~~~~~ea-~TD~~G~F~I~vp~~~~d~~~~C~V~Lvs 119 (164)
..+.++..|.|+=.|.++ .+..... .+|++|.|..+++-+.......-.+++-.
T Consensus 30 ~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 30 FKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp CSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 456677888888888844 4456667 78999999987765333222344444443
No 50
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=29.93 E-value=1.2e+02 Score=22.81 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=30.7
Q ss_pred ceecCCCeEEEEeecC-CceEEEEEEEcCCCeeEEEEccCCCCCCcCceEEEEe
Q 031177 66 DHVLEGAEVAVLCITK-SGEVLNYQAFTNAKGMYTVAETMPESDRWDACLARPI 118 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~~-~~~~~~~ea~TD~~G~F~I~vp~~~~d~~~~C~V~Lv 118 (164)
-.|-+|.+|+|.=.+. .....-.+++||++|.-.-.++. +......-+|+
T Consensus 13 G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~---~~~~~G~Y~l~ 63 (113)
T cd05469 13 GSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITE---EEFXAGVYRVE 63 (113)
T ss_pred CccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCcccc---ccccceEEEEE
Confidence 4577889999975443 23344468999999988643342 12234455554
No 51
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=29.88 E-value=99 Score=23.92 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=25.0
Q ss_pred ceecCCCeEEEEeecCCceEEEEEEEcCCCeeEE
Q 031177 66 DHVLEGAEVAVLCITKSGEVLNYQAFTNAKGMYT 99 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~~~~~~~~~ea~TD~~G~F~ 99 (164)
.+|-+|.+|.|.=.+.++...-.+..||++|.=.
T Consensus 21 GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d 54 (124)
T COG2351 21 GKPAAGVKVELYRLEGNQWELLKTVVTNADGRID 54 (124)
T ss_pred CCcCCCCEEEEEEecCCcceeeeEEEecCCCccc
Confidence 4566788888877776666666688999999655
No 52
>TIGR02513 type_III_yscB type III secretion system chaperone, YscB family. Members of this family include YscB of Yersinia and functionally equivalent (but differently named) proteins from type III secretion systems of other pathogens that affect animal cells. YscB acts, along with SycN (TIGR02503), as a chaperone for YopN, a key part of a complex that regulates type III secretion so it responds to contact with the eukaryotic target cell.
Probab=29.68 E-value=50 Score=26.00 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=13.2
Q ss_pred EcCCCeeEEEEccC
Q 031177 91 FTNAKGMYTVAETM 104 (164)
Q Consensus 91 ~TD~~G~F~I~vp~ 104 (164)
+.|++|.|.|++++
T Consensus 17 VAd~qG~Yhl~iD~ 30 (139)
T TIGR02513 17 VADRQGVYHLTIDQ 30 (139)
T ss_pred ccCCCCceEEEEcC
Confidence 78999999999998
No 53
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=29.68 E-value=1.7e+02 Score=25.54 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=32.0
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc---------eEE--EEEEEcCCCeeEEEE
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG---------EVL--NYQAFTNAKGMYTVA 101 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~---------~~~--~~ea~TD~~G~F~I~ 101 (164)
+.|.|+|. |. ...||+||.|-|=.-|..+ ..+ +....||++|.|...
T Consensus 129 l~v~G~V~-D~--------~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~ 186 (285)
T TIGR02439 129 LFLHGQVT-DA--------DGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRAR 186 (285)
T ss_pred EEEEEEEE-CC--------CCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEE
Confidence 47778887 41 1359999999997777622 112 334589999998764
No 54
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=28.44 E-value=1.7e+02 Score=23.95 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=33.5
Q ss_pred cceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc--------------eEEE--EEEEcCCCeeEEEE
Q 031177 45 TGEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG--------------EVLN--YQAFTNAKGMYTVA 101 (164)
Q Consensus 45 ~~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~--------------~~~~--~ea~TD~~G~F~I~ 101 (164)
.+.|.|+|. |. .-.||+||.|-|=--|..+ ..+. ....||++|.|.+.
T Consensus 39 ~l~l~G~V~-D~--------~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~ 102 (193)
T TIGR02423 39 RIRLEGRVL-DG--------DGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFE 102 (193)
T ss_pred EEEEEEEEE-CC--------CCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEE
Confidence 479999999 42 1479999999997666411 0122 24589999999754
No 55
>smart00095 TR_THY Transthyretin.
Probab=28.20 E-value=1.4e+02 Score=22.85 Aligned_cols=35 Identities=17% Similarity=-0.035 Sum_probs=24.0
Q ss_pred CceecCCCeEEEEeec-CCceEEEEEEEcCCCeeEE
Q 031177 65 EDHVLEGAEVAVLCIT-KSGEVLNYQAFTNAKGMYT 99 (164)
Q Consensus 65 ~s~~I~GA~V~V~Ck~-~~~~~~~~ea~TD~~G~F~ 99 (164)
...|-+|.+|+|.=.+ ......-.++.||++|.-.
T Consensus 15 ~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~ 50 (121)
T smart00095 15 RGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIH 50 (121)
T ss_pred CCccCCCCEEEEEEeCCCCceEEEEEEecCCCcccc
Confidence 3457789999995433 2333445678999999875
No 56
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=28.00 E-value=1.3e+02 Score=25.76 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=32.1
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc---------eEE--EEEEEcCCCeeEEEE
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG---------EVL--NYQAFTNAKGMYTVA 101 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~---------~~~--~~ea~TD~~G~F~I~ 101 (164)
+.|.|+|. |. ...||+||.|-|=--|..+ ..+ +....||++|.|...
T Consensus 105 l~l~G~V~-D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~ 162 (256)
T cd03458 105 LFVHGTVT-DT--------DGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFR 162 (256)
T ss_pred EEEEEEEE-cC--------CCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEE
Confidence 47778887 42 2369999999997766522 122 335589999998764
No 57
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=27.26 E-value=1.4e+02 Score=22.79 Aligned_cols=35 Identities=14% Similarity=-0.076 Sum_probs=23.7
Q ss_pred ceecCCCeEEEEeec-CCceEEEEEEEcCCCeeEEE
Q 031177 66 DHVLEGAEVAVLCIT-KSGEVLNYQAFTNAKGMYTV 100 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~-~~~~~~~~ea~TD~~G~F~I 100 (164)
-.|=+|.+|+|.=.+ ......-.+++||++|.-.-
T Consensus 19 G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ 54 (121)
T cd05821 19 GSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHG 54 (121)
T ss_pred CccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCC
Confidence 456788889886443 23334445899999998853
No 58
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=26.94 E-value=1.9e+02 Score=24.65 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=32.0
Q ss_pred ceEEEEEEcccCCCCCCCCCceecCCCeEEEEeecCCc---------eE--EEEEEEcCCCeeEEEE
Q 031177 46 GEIHGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSG---------EV--LNYQAFTNAKGMYTVA 101 (164)
Q Consensus 46 ~~V~G~VyCD~C~~~~~t~~s~~I~GA~V~V~Ck~~~~---------~~--~~~ea~TD~~G~F~I~ 101 (164)
+.|.|+|. |. . ..||+||.|-|=--|..+ .. ++....||++|.|...
T Consensus 100 l~l~G~V~-D~--~------G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~ 157 (247)
T cd03462 100 LLFRGTVK-DL--A------GAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVR 157 (247)
T ss_pred EEEEEEEE-cC--C------CCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEE
Confidence 47888887 42 2 359999999997766522 11 2335589999998754
No 59
>PRK02693 apocytochrome f; Reviewed
Probab=26.75 E-value=44 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhccccccccc----------eEEEEEEcccCCCC
Q 031177 25 MGFFGFLLTIISFASNVEAWTG----------EIHGRVVCDVCGDS 60 (164)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~a~~~----------~V~G~VyCD~C~~~ 60 (164)
.+++.+++.++.++..+.|+.+ .-+|++.|..|.=.
T Consensus 10 ~~~~~~~~~~~~~~~~s~AYPi~AQQ~YenPREAtGrIVCANCHLA 55 (312)
T PRK02693 10 AGSLLLLASDLILPQSAAAYPFWAQQNYESPREATGKIVCANCHLA 55 (312)
T ss_pred HHHHHHHHHHhcccchhhccchhHhhccCChhhhcCcEEeeccccc
Confidence 3334444444444454555444 78999999999854
No 60
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=25.92 E-value=2.1e+02 Score=19.76 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=13.8
Q ss_pred EEEEeecCCceEEEEEEEcCCCeeEEEEcc
Q 031177 74 VAVLCITKSGEVLNYQAFTNAKGMYTVAET 103 (164)
Q Consensus 74 V~V~Ck~~~~~~~~~ea~TD~~G~F~I~vp 103 (164)
+.++.++.+...+...=+-.+.|.|+|.+.
T Consensus 46 ~~~~v~d~~dGty~v~y~P~~~G~~~i~V~ 75 (93)
T smart00557 46 VPVEVKDNGDGTYTVSYTPTEPGDYTVTVK 75 (93)
T ss_pred eEeEEEeCCCCEEEEEEEeCCCEeEEEEEE
Confidence 444444443333333334455555555554
No 61
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.64 E-value=69 Score=24.97 Aligned_cols=15 Identities=33% Similarity=0.416 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhh
Q 031177 23 LVMGFFGFLLTIISF 37 (164)
Q Consensus 23 ~~~~~~~~~~~~~~~ 37 (164)
++|+.+++.++|++|
T Consensus 16 iv~LiI~sf~~i~~f 30 (132)
T COG5341 16 IVMLIILSFLPILLF 30 (132)
T ss_pred ehHHHHHHHHHHHhh
Confidence 477777777765433
No 62
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=24.38 E-value=1.3e+02 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=18.1
Q ss_pred hccccccccceEEEEEEcccCCCC
Q 031177 37 FASNVEAWTGEIHGRVVCDVCGDS 60 (164)
Q Consensus 37 ~~~~~~a~~~~V~G~VyCD~C~~~ 60 (164)
|++.+...++.+.|.|.=.+|.-.
T Consensus 19 ~aa~~~~g~I~f~G~I~~~tC~v~ 42 (174)
T PRK15209 19 FAAESGDGTVKFTGEIVDAPCVVS 42 (174)
T ss_pred cccccCCcEEEEEEEEEcCcceEe
Confidence 444444578899999998899854
No 63
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=23.95 E-value=38 Score=18.41 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.7
Q ss_pred EcccCCCCCCCC
Q 031177 53 VCDVCGDSSIGP 64 (164)
Q Consensus 53 yCD~C~~~~~t~ 64 (164)
||+.|...+.+.
T Consensus 3 ~C~~C~k~f~~~ 14 (27)
T PF12171_consen 3 YCDACDKYFSSE 14 (27)
T ss_dssp BBTTTTBBBSSH
T ss_pred CcccCCCCcCCH
Confidence 899999887653
No 64
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=21.72 E-value=1.2e+02 Score=20.92 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=25.2
Q ss_pred ceecCCCeEEEEeecCCceEEEEEE-EcCCCeeEE
Q 031177 66 DHVLEGAEVAVLCITKSGEVLNYQA-FTNAKGMYT 99 (164)
Q Consensus 66 s~~I~GA~V~V~Ck~~~~~~~~~ea-~TD~~G~F~ 99 (164)
-..=||+++....+....+++..+| -.|++|.|.
T Consensus 29 ~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~~~~~~ 63 (91)
T PF12973_consen 29 LRLEPGASLPRHRHPGGEEILVLEGELSDGDGRYG 63 (91)
T ss_dssp EEE-TTEEEEEEEESS-EEEEEEECEEEETTCEEE
T ss_pred EEECCCCCcCccCCCCcEEEEEEEEEEEECCccCC
Confidence 3445999999999987777777776 678888874
No 65
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=21.10 E-value=45 Score=23.25 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=15.8
Q ss_pred EEEcCCCeeEEEEccCCCCCCcCceEEEEeeC
Q 031177 89 QAFTNAKGMYTVAETMPESDRWDACLARPISS 120 (164)
Q Consensus 89 ea~TD~~G~F~I~vp~~~~d~~~~C~V~LvsS 120 (164)
.--||.+|.|+|+-..-... .=.|+|++.
T Consensus 13 RtWtD~tG~f~VeA~fv~~~---dgkV~L~k~ 41 (70)
T PF03983_consen 13 RTWTDRTGKFKVEAEFVGVN---DGKVHLHKT 41 (70)
T ss_dssp EEEEBSSS--EEEEEEEEEE---TTEEEEE-T
T ss_pred eEEEeCCCCEEEEEEEEEee---CCEEEEEec
Confidence 34799999999986652211 124666654
No 66
>PRK15289 lpfA fimbrial protein; Provisional
Probab=20.68 E-value=1.7e+02 Score=23.14 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=16.8
Q ss_pred ccccccceEEEEEEcccCCCC
Q 031177 40 NVEAWTGEIHGRVVCDVCGDS 60 (164)
Q Consensus 40 ~~~a~~~~V~G~VyCD~C~~~ 60 (164)
.+...++.+.|.|.=.+|.-.
T Consensus 22 ~a~~G~I~f~G~I~~~tC~I~ 42 (190)
T PRK15289 22 LAEDGVVHFVGEIVDTTCEVT 42 (190)
T ss_pred cccCCEEEEEEEEecceeEEe
Confidence 344578899999999999854
No 67
>KOG4309 consensus Transcription mediator-related factor [Transcription]
Probab=20.23 E-value=60 Score=26.90 Aligned_cols=71 Identities=23% Similarity=0.175 Sum_probs=42.3
Q ss_pred eecccccceeeeeeecchhhHHHHHHHHHHHHhhhccccccccceEEEEE--EcccCCCCCCCCCceecCCCeEEEEee
Q 031177 3 KITSKGFFKKSIIMESQKKKLVMGFFGFLLTIISFASNVEAWTGEIHGRV--VCDVCGDSSIGPEDHVLEGAEVAVLCI 79 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~V~G~V--yCD~C~~~~~t~~s~~I~GA~V~V~Ck 79 (164)
.|-.+|-||||-+.+.+++-|||.=+ .=.++ + ..+.-+...|.- |||-=-.=+.-.--..+.|..|.||=+
T Consensus 75 SI~~ngTfKks~~VaD~~FDLlm~Kl--~~~f~---s-~ka~KIE~rG~ry~Y~Df~IkvGtvTmg~tvKGi~vEIEY~ 147 (217)
T KOG4309|consen 75 SIFENGTFKKSCLVADTNFDLLMVKL--KGFFQ---S-AKASKIETRGTRYQYCDFLIKVGTVTMGPTVKGISVEIEYG 147 (217)
T ss_pred EEecCCCcceeEEEecCCcceeehhh--cccee---e-ccccceeeccceeeecceEEEEcceEeccccceEEEEEeeC
Confidence 46789999999999999999988765 11122 2 233334555544 455433322212233467777777643
Done!