BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031180
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
Length = 255
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 16 LISHAFSQSVIQIFPGRIEFAGDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFV 75
L SH F + +I +P ++++R DEL C +WRF VETN+ W ++P C ++V
Sbjct: 19 LNSHVFPRPLIIEYP-------EKQLR--DELKCTTWRFVVETNNLSPWKTIPEECADYV 69
Query: 76 QKYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGY 135
++YM G Y + + VS + ++AKS ++ DG+D W+FD+DETLLSNLPYY+ H +G
Sbjct: 70 KEYMVGPGYKMEIDRVSDEAGEYAKSVDL-GDDGRDVWIFDVDETLLSNLPYYSDHRYGL 128
Query: 136 FVF 138
VF
Sbjct: 129 EVF 131
>sp|P10742|S25K_SOYBN Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2
SV=2
Length = 291
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 9/122 (7%)
Query: 28 IFPGRIEFA-GDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLS 86
+FP R+ G R E+ C SWR +VE ++ ++++P CVE ++Y+ GE Y S
Sbjct: 21 MFPLRMNTGYGART----PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRS 76
Query: 87 DSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGYFVFFSEPLD-W 145
DS+ V+ + +A+ V KD +VF ID T+LSN+PYY HG+G F S D W
Sbjct: 77 DSKTVNQQAYFYARDLEVHP---KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEW 133
Query: 146 IS 147
++
Sbjct: 134 VN 135
>sp|P15490|VSPA_SOYBN Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1
Length = 254
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 46 ELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYLSDSEIVSGYSLKHAKSANVS 105
E+ C SWR +VE ++ ++++P CVE ++Y+ GE Y SDS+ V+ + +A+ V
Sbjct: 39 EVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEVH 98
Query: 106 AGDGKDAWVFDIDETLLSNLPYYAAHGFGYFVFFSEPLD-WIS 147
KD +VF ID T+LSN+PYY HG+G F S D W++
Sbjct: 99 P---KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVN 138
>sp|P10743|VSPB_SOYBN Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1
Length = 254
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Query: 27 QIFPGRIEFA-GDRKIRAGDELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEHYL 85
Q FP R++ G+R E+ C S+R +VE ++ + ++P CVE + Y+ GE +
Sbjct: 24 QRFPLRMKTGYGER----SSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFR 79
Query: 86 SDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFG 134
SDS+ V+ + +A V D ++F ID T+LSN+PYY HG+G
Sbjct: 80 SDSKTVNQQAFFYASEREVHHN---DIFIFGIDNTVLSNIPYYEKHGYG 125
>sp|O82122|VSP2_ARATH Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1
SV=1
Length = 265
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 49 CDSWRFSVETNDAGEWDSVPSRCVEFVQKYM-TGEHYLSDSEIVSGYSLKHAKSANVSAG 107
C SW VET++ ++D+VP+ C ++V+ Y+ T + Y DS+ V + +AK +
Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALK-N 110
Query: 108 DGKDAWVFDIDETLLSNLPYYAAHGFG 134
D + W+FD+D+TLLS++PYYA +G+G
Sbjct: 111 DTVNVWIFDLDDTLLSSIPYYAKYGYG 137
>sp|O49195|VSP1_ARATH Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2
SV=2
Length = 270
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 49 CDSWRFSVETNDAGEWDSVPSRCVEFVQKYM-TGEHYLSDSEIVSGYSLKHAKSANVSAG 107
C SW VET++ +D+VP+ C +V+ Y+ T + Y DS+ V+ + +AK +
Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALK-N 115
Query: 108 DGKDAWVFDIDETLLSNLPYYAAHGFG 134
D + W+FD+D+TLLS++PYYA +G+G
Sbjct: 116 DTVNVWIFDLDDTLLSSIPYYAKYGYG 142
>sp|Q0BU78|YIDC_GRABC Membrane protein insertase YidC OS=Granulibacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1) GN=yidC PE=3 SV=1
Length = 578
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 127 YYAAHGFGYFVFFSEP----LDWISLFVGSYGVVIL 158
++ A FG+F F + P LDW+ VG++GV IL
Sbjct: 336 FWEAVDFGWFWFITRPFFYALDWLYHLVGNFGVAIL 371
>sp|Q82446|CAPSD_HASV2 Capsid polyprotein VP90 OS=Human astrovirus-2 GN=ORF2 PE=2 SV=1
Length = 796
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 77 KYMTGEHYLSDSEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYYAAHGFGYF 136
++ GE YL S + K N+ G WV+D E L S+ PYYA YF
Sbjct: 583 RFQVGEWYLLTSTTL--------KENNLPEG-----WVWDRVE-LKSDTPYYADQALTYF 628
Query: 137 VFFSEPLDWISLFVGSYGVVILPRV 161
+ P+D LF G+ LPR+
Sbjct: 629 I-TPPPVDSQILFEGN---TTLPRI 649
>sp|Q8FV29|YIDC_BRUSU Membrane protein insertase YidC OS=Brucella suis biovar 1 (strain
1330) GN=yidC PE=3 SV=1
Length = 610
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 133 FGYFVFFSEPL----DWISLFVGSYGVVIL 158
+G+F F ++P+ DWI F G++GV IL
Sbjct: 364 WGWFYFITKPMFYLIDWIYKFTGNFGVAIL 393
>sp|Q8YDA3|YIDC_BRUME Membrane protein insertase YidC OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=yidC PE=3 SV=2
Length = 610
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 133 FGYFVFFSEPL----DWISLFVGSYGVVIL 158
+G+F F ++P+ DWI F G++GV IL
Sbjct: 364 WGWFYFITKPMFYLIDWIYKFTGNFGVAIL 393
>sp|Q2W2B0|TOLB_MAGSA Protein TolB OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
700264) GN=tolB PE=3 SV=1
Length = 447
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 31 GRIEFAGDRKIRAG-------DELYCDSWRFSVETNDAGEWDSVPSRCVEFVQKYMTGEH 83
G+IE D ++R +E Y W S D W + + + + K +TGE
Sbjct: 113 GKIESGADGRVRVEFRLWDVFNEAYMTGWTLSASPQD---WRRLSHKVADAIYKRVTGED 169
Query: 84 YLSDSEIV----SGYSLKHAKSANVSAGDGKD-AWVFDIDETLLSNLPYYAAHGFGYFVF 138
D++IV SG K ++ DG++ ++ D E +L+ +A Y +
Sbjct: 170 GYFDTQIVYIAESGPKNDRKKRLSIMDQDGENHRFLTDGSELVLTPRFSPSAREITYLSY 229
Query: 139 F 139
F
Sbjct: 230 F 230
>sp|Q9RNL5|YIDC_ZYMMO Membrane protein insertase YidC OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=yidC PE=3 SV=2
Length = 579
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 80 TGEHYLSD---SEIVSGYSLKHAKSANVSAGDGKDAWVFDIDETLLSNLPYY-AAHGFGY 135
+ HY +D + +V + S +V AG K+ V D L +LP++ A +G+
Sbjct: 281 SNHHYQADFTVAPVVVAAGKTASTSVDVFAG-AKEVRVLDRYRDQL-HLPHFDKAIDWGW 338
Query: 136 F-----VFFSEPLDWISLFVGSYGVVIL 158
F VFF LDW+ L VG+YG+ I+
Sbjct: 339 FAIIEKVFFYY-LDWLFLHVGNYGLAII 365
>sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11
PE=2 SV=1
Length = 711
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 24/78 (30%)
Query: 65 DSVPSR-----CVEFVQKYMTGE-----HYLSDSEIVSGYSLKHAKSANVSAGDGKDAWV 114
D+ PSR C+E ++KY G+ LSD + GYS K WV
Sbjct: 65 DNKPSRRTLHICLEQLRKYCMGDRPIEFEVLSDQSVNFGYS--------------KFPWV 110
Query: 115 FDIDETLLSNLPYYAAHG 132
D L +LP ++ HG
Sbjct: 111 NYQDNNLNISLPVFSVHG 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,580,553
Number of Sequences: 539616
Number of extensions: 2645967
Number of successful extensions: 6768
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6754
Number of HSP's gapped (non-prelim): 19
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)