Query 031181
Match_columns 164
No_of_seqs 138 out of 192
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 1.4E-43 3.1E-48 286.1 11.3 138 23-164 24-167 (167)
2 PF14159 CAAD: CAAD domains of 100.0 6.4E-32 1.4E-36 198.9 8.3 85 78-162 2-90 (90)
3 PF01810 LysE: LysE type trans 76.8 6 0.00013 30.8 5.0 38 110-147 47-85 (191)
4 PRK09304 arginine exporter pro 72.6 6.5 0.00014 31.8 4.3 34 108-141 56-89 (207)
5 PF11364 DUF3165: Protein of u 72.3 6 0.00013 29.4 3.7 56 92-147 25-80 (81)
6 PRK10958 leucine export protei 68.7 8.6 0.00019 31.3 4.3 34 108-141 63-96 (212)
7 PRK10323 cysteine/O-acetylseri 67.3 9.6 0.00021 30.6 4.2 50 93-142 43-93 (195)
8 PF01616 Orbi_NS3: Orbivirus N 67.1 32 0.00068 29.2 7.4 86 75-161 74-167 (195)
9 PF11351 DUF3154: Protein of u 65.8 24 0.00052 27.2 6.0 20 121-140 97-116 (123)
10 PRK10229 threonine efflux syst 65.0 12 0.00025 30.0 4.3 34 108-141 58-91 (206)
11 PRK10520 rhtB homoserine/homos 64.7 12 0.00026 30.0 4.3 37 107-143 58-94 (205)
12 PF05251 UPF0197: Uncharacteri 62.9 5.1 0.00011 29.4 1.7 36 117-152 16-51 (77)
13 TIGR00949 2A76 The Resistance 60.8 16 0.00035 28.4 4.3 35 107-141 40-74 (185)
14 PF11190 DUF2976: Protein of u 57.3 27 0.00059 26.0 4.7 75 66-143 5-83 (87)
15 PF10864 DUF2663: Protein of u 57.2 52 0.0011 26.3 6.6 13 81-93 10-22 (130)
16 TIGR00948 2a75 L-lysine export 55.6 25 0.00054 27.4 4.6 36 107-142 41-76 (177)
17 COG4956 Integral membrane prot 48.1 58 0.0013 30.0 6.2 60 92-153 80-141 (356)
18 PF10031 DUF2273: Small integr 45.5 38 0.00081 22.7 3.6 33 81-115 1-34 (51)
19 PF07787 DUF1625: Protein of u 43.9 58 0.0013 27.3 5.3 54 69-123 164-218 (248)
20 PF10958 DUF2759: Protein of u 43.1 40 0.00086 23.2 3.4 42 100-141 3-44 (52)
21 KOG4452 Predicted membrane pro 42.7 27 0.0006 25.6 2.7 42 116-157 17-59 (79)
22 COG1280 RhtB Putative threonin 42.0 34 0.00073 28.0 3.5 37 107-143 58-94 (208)
23 PRK07193 fliF flagellar MS-rin 38.9 46 0.001 31.9 4.4 17 72-88 4-20 (552)
24 TIGR03745 conj_TIGR03745 integ 38.9 81 0.0018 24.4 4.9 49 66-117 21-69 (104)
25 PF06716 DUF1201: Protein of u 38.6 48 0.001 22.7 3.2 17 129-145 24-40 (54)
26 PF13779 DUF4175: Domain of un 37.3 93 0.002 31.4 6.3 60 95-155 7-70 (820)
27 PF12597 DUF3767: Protein of u 36.8 1.3E+02 0.0027 23.3 5.7 74 68-145 14-95 (118)
28 PF04418 DUF543: Domain of unk 35.8 52 0.0011 23.8 3.3 29 79-107 17-48 (75)
29 PF08711 Med26: TFIIS helical 34.8 1.2E+02 0.0026 19.4 4.7 50 110-160 2-51 (53)
30 PF12911 OppC_N: N-terminal TM 34.2 74 0.0016 20.3 3.6 19 79-97 4-23 (56)
31 PF11833 DUF3353: Protein of u 34.2 1.1E+02 0.0023 25.6 5.3 50 90-139 139-193 (194)
32 PF06072 Herpes_US9: Alphaherp 34.0 1.7E+02 0.0037 20.7 5.5 48 67-114 5-55 (60)
33 PF08606 Prp19: Prp19/Pso4-lik 33.8 41 0.00088 24.4 2.4 19 69-87 2-20 (70)
34 PF05552 TM_helix: Conserved T 33.4 60 0.0013 21.1 3.0 38 79-116 3-41 (53)
35 PF07332 DUF1469: Protein of u 32.9 2E+02 0.0042 21.0 6.7 27 133-159 90-121 (121)
36 COG4280 Predicted membrane pro 32.2 82 0.0018 27.5 4.4 53 88-142 32-84 (236)
37 PF06522 B12D: NADH-ubiquinone 30.5 25 0.00055 24.8 0.9 19 127-145 15-33 (73)
38 PF14012 DUF4229: Protein of u 30.0 2E+02 0.0043 20.2 6.3 30 129-158 38-67 (69)
39 PF08285 DPM3: Dolichol-phosph 29.9 2.3E+02 0.0051 21.0 6.0 64 96-160 9-84 (91)
40 PF03904 DUF334: Domain of unk 29.1 1E+02 0.0022 27.0 4.5 43 72-114 128-170 (230)
41 PRK09848 glucuronide transport 28.5 1.3E+02 0.0029 26.0 5.2 34 125-158 413-446 (448)
42 PF10192 GpcrRhopsn4: Rhodopsi 26.7 79 0.0017 26.6 3.4 68 89-156 172-248 (257)
43 PRK06007 fliF flagellar MS-rin 25.3 1E+02 0.0022 29.3 4.2 22 72-93 4-25 (542)
44 TIGR02849 spore_III_AD stage I 25.3 1.8E+02 0.0039 22.2 4.8 60 94-154 5-75 (101)
45 PF06686 SpoIIIAC: Stage III s 24.6 65 0.0014 21.4 2.0 30 123-153 2-31 (58)
46 PRK00888 ftsB cell division pr 24.1 72 0.0016 24.0 2.4 31 126-156 12-46 (105)
47 TIGR00766 ribonuclease, putati 23.5 1.6E+02 0.0035 24.5 4.6 42 75-117 65-110 (263)
48 PF06295 DUF1043: Protein of u 22.2 1.2E+02 0.0026 23.3 3.4 28 132-159 12-40 (128)
49 PF11833 DUF3353: Protein of u 21.5 1.9E+02 0.0041 24.1 4.6 59 75-139 77-135 (194)
50 KOG2927 Membrane component of 21.4 66 0.0014 29.9 2.1 44 97-140 224-279 (372)
51 PF14242 DUF4342: Domain of un 21.3 2.7E+02 0.0058 20.4 4.9 22 66-87 8-29 (84)
52 PRK06012 flhA flagellar biosyn 21.2 1.9E+02 0.0041 28.8 5.3 67 55-139 263-329 (697)
53 PF10003 DUF2244: Integral mem 20.4 1.9E+02 0.0042 22.3 4.3 19 123-141 43-61 (140)
54 PF04612 T2SM: Type II secreti 20.2 34 0.00074 26.1 0.0 12 78-89 2-13 (160)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=1.4e-43 Score=286.09 Aligned_cols=138 Identities=35% Similarity=0.667 Sum_probs=119.9
Q ss_pred ccccccccccCCCCCC----CCCCCCccccccccCcccceeeeccCC--CCCCccchhHHHHHHHHHHHhccchhhhHHH
Q 031181 23 KSSHCFALPCLPPRSS----TPPFSSSIKQVSESRRFPLLQVRASSS--EETSTVDADELFSDLKEKWDAVENKSTVLLY 96 (164)
Q Consensus 23 ~~~~~~~~p~lp~r~~----~~~~~~~~~~~~~~~~~~~~~~~ass~--~e~ss~~~~Ei~~~lqe~Wd~~e~k~~v~~~ 96 (164)
++.+|..||.|||..- ++++++.||+...++-+ ++|+++ ++.++.+.+|+++++||+||++|||++++++
T Consensus 24 ~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv----~~a~ge~s~~~~~~~~~ei~k~~~e~Wd~~EdK~av~~l 99 (167)
T PLN02777 24 ASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVV----TMATGEAPAEVETTELPEIVKTVQEAWDKVEDKYAVSSL 99 (167)
T ss_pred cCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHH----HHhccCCCcccccccHHHHHHHHHHHHhhhcchhHHHHH
Confidence 4689999999996332 45668888877666543 346552 3334567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHHHHHHHhhcCCC
Q 031181 97 GGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 164 (164)
Q Consensus 97 g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i~~lk~~I~G~~ 164 (164)
++++||++|++.+||+|||+|||+|++||||||||++||+||||+|++|||||+++|+++|++|+|+.
T Consensus 100 ~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~IlG~s 167 (167)
T PLN02777 100 AFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIGSS 167 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999973
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.97 E-value=6.4e-32 Score=198.93 Aligned_cols=85 Identities=54% Similarity=0.905 Sum_probs=74.5
Q ss_pred HHHHHHHHhccchhhhH----HHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHH
Q 031181 78 SDLKEKWDAVENKSTVL----LYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDI 153 (164)
Q Consensus 78 ~~lqe~Wd~~e~k~~v~----~~g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i 153 (164)
+++++.|++.++++... ++++++++++|++.++++|||+||++|++|||||+||++||+||||+|+++||||.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 35566666666655444 44455699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC
Q 031181 154 EALKKKIAG 162 (164)
Q Consensus 154 ~~lk~~I~G 162 (164)
+++|++|+|
T Consensus 82 ~~~k~~i~G 90 (90)
T PF14159_consen 82 QSLKKEILG 90 (90)
T ss_pred HHHHHHhcC
Confidence 999999998
No 3
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=76.81 E-value=6 Score=30.84 Aligned_cols=38 Identities=34% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHhhh-hcCCChhHHHHHhhhhhhhhhhhhhhccchhHH
Q 031181 110 IVGAI-NSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRK 147 (164)
Q Consensus 110 vl~AI-d~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~ 147 (164)
-+.++ +..|.+-..++++|..|..|+.|+.+..+.+.+
T Consensus 47 g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~ 85 (191)
T PF01810_consen 47 GLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSK 85 (191)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 34444 669999999999999999999999987554443
No 4
>PRK09304 arginine exporter protein; Provisional
Probab=72.62 E-value=6.5 Score=31.80 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhc
Q 031181 108 STIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (164)
Q Consensus 108 ~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLL 141 (164)
.++-.-++..|.+=.++.++|..|..|..|+-+-
T Consensus 56 ~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 56 FGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344447899999999999999999999998764
No 5
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=72.34 E-value=6 Score=29.40 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccchhHH
Q 031181 92 TVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRK 147 (164)
Q Consensus 92 ~v~~~g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~ 147 (164)
++=.++..+++++.+..++++.+.-.-+-|-+|=-+|....++|.+|.+.+=++|+
T Consensus 25 Tln~i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 25 TLNMIGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 34455677788888888999999999999999999999999999999988766654
No 6
>PRK10958 leucine export protein LeuE; Provisional
Probab=68.69 E-value=8.6 Score=31.35 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=28.4
Q ss_pred HHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhc
Q 031181 108 STIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (164)
Q Consensus 108 ~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLL 141 (164)
.++-.-++..|.+-..++++|.+|..|+.||-+-
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788999999999999999999998663
No 7
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=67.27 E-value=9.6 Score=30.60 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHH-hhhhcCCChhHHHHHhhhhhhhhhhhhhhcc
Q 031181 93 VLLYGGGAIVAVWLSSTIV-GAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142 (164)
Q Consensus 93 v~~~g~gaival~~~~~vl-~AId~IPLlp~llELVGlgyt~WFvyRyLLf 142 (164)
++|...|-++...+..+.+ .-++..|.+=.++.++|..|..|..||-+..
T Consensus 43 ~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 43 LAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444 3456889999999999999999999997753
No 8
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=67.13 E-value=32 Score=29.18 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhccchhhhHHHHH--HHHHHHHHHHHHHhhhhcCCChhHHHHHh-----hh-hhhhhhhhhhhccchhH
Q 031181 75 ELFSDLKEKWDAVENKSTVLLYGG--GAIVAVWLSSTIVGAINSVPLLPKLLELI-----GL-GYTGWFVYRYLLFKSSR 146 (164)
Q Consensus 75 Ei~~~lqe~Wd~~e~k~~v~~~g~--gaival~~~~~vl~AId~IPLlp~llELV-----Gl-gyt~WFvyRyLLf~~~R 146 (164)
.++.+++......+.|+.++-++. .+++++- .+.+....|-.+-++..++-. ++ +.+.-+..-.+.-+..|
T Consensus 74 ~~L~~L~~el~~~kRk~~il~~~~li~a~v~l~-ts~~~~~~~~~~~~~~~l~~~~~~~~~~~~inL~~T~~~~~~~r~~ 152 (195)
T PF01616_consen 74 QILPKLKHELRKLKRKRRILHIVELIAAIVALL-TSVVMAISDMSPELKSNLKEKNWISITLHVINLIATTAMMFCARIE 152 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888888888776552 3333322 222222222222333333310 01 11122223333446678
Q ss_pred HHHHHHHHHHHHhhc
Q 031181 147 KELATDIEALKKKIA 161 (164)
Q Consensus 147 ~eL~~~i~~lk~~I~ 161 (164)
+.|-++++.+|++|.
T Consensus 153 ~~l~~~i~r~kkeI~ 167 (195)
T PF01616_consen 153 RSLQEQIKRLKKEIM 167 (195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999985
No 9
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=65.85 E-value=24 Score=27.17 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.7
Q ss_pred hHHHHHhhhhhhhhhhhhhh
Q 031181 121 PKLLELIGLGYTGWFVYRYL 140 (164)
Q Consensus 121 p~llELVGlgyt~WFvyRyL 140 (164)
..+..|.|+|++++|+.|..
T Consensus 97 e~lw~Llg~~vlgy~~~Rs~ 116 (123)
T PF11351_consen 97 EPLWWLLGAGVLGYFGARSQ 116 (123)
T ss_pred HHHHHHHHHHHhhhHHHhhH
Confidence 47889999999999999964
No 10
>PRK10229 threonine efflux system; Provisional
Probab=65.01 E-value=12 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhc
Q 031181 108 STIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (164)
Q Consensus 108 ~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLL 141 (164)
.++-.-+...|.+-.++.++|..|..|+.|+-+-
T Consensus 58 ~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 58 LGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566888999999999999999999998775
No 11
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=64.71 E-value=12 Score=29.96 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=30.8
Q ss_pred HHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccc
Q 031181 107 SSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFK 143 (164)
Q Consensus 107 ~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~ 143 (164)
..++-.-++..|.+=.+++++|.+|..|+.+|-+..+
T Consensus 58 ~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 58 GVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555566788999999999999999999999977543
No 12
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=62.95 E-value=5.1 Score=29.40 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=26.6
Q ss_pred CCChhHHHHHhhhhhhhhhhhhhhccchhHHHHHHH
Q 031181 117 VPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATD 152 (164)
Q Consensus 117 IPLlp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~ 152 (164)
.|.+.-+|=.+|+.+++||........+.++.+.++
T Consensus 16 ~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kE 51 (77)
T PF05251_consen 16 YPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKE 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Confidence 356667788899999999998888865555444443
No 13
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=60.79 E-value=16 Score=28.41 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhc
Q 031181 107 SSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (164)
Q Consensus 107 ~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLL 141 (164)
..++-.-++..|.+-..+.++|-.|..|+.||-+.
T Consensus 40 ~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 40 LLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788999999999999999999998664
No 14
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=57.29 E-value=27 Score=26.00 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=50.7
Q ss_pred CCCCccchhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhhhhcCC----ChhHHHHHhhhhhhhhhhhhhhc
Q 031181 66 EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVP----LLPKLLELIGLGYTGWFVYRYLL 141 (164)
Q Consensus 66 ~e~ss~~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~vl~AId~IP----Llp~llELVGlgyt~WFvyRyLL 141 (164)
|.+|+.+.+++++.++..-. |-..++++.++++.++++..+.+++-|.+- =-..+-..+.+|...-++.=||+
T Consensus 5 e~Ps~g~~~~~~~~i~~y~~---d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 5 EPPSSGGGGGIMETIKGYAK---DGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred CCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 34445566778888776655 466778888999999999999999888763 33445555555555555555555
Q ss_pred cc
Q 031181 142 FK 143 (164)
Q Consensus 142 f~ 143 (164)
.+
T Consensus 82 ~~ 83 (87)
T PF11190_consen 82 TK 83 (87)
T ss_pred HH
Confidence 43
No 15
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=57.24 E-value=52 Score=26.31 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=9.5
Q ss_pred HHHHHhccchhhh
Q 031181 81 KEKWDAVENKSTV 93 (164)
Q Consensus 81 qe~Wd~~e~k~~v 93 (164)
+++||+++-+-..
T Consensus 10 K~K~e~l~k~~~~ 22 (130)
T PF10864_consen 10 KEKWERLKKQHLF 22 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 7899999865433
No 16
>TIGR00948 2a75 L-lysine exporter.
Probab=55.63 E-value=25 Score=27.45 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhcc
Q 031181 107 SSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142 (164)
Q Consensus 107 ~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf 142 (164)
..++-.-++..|.+=..+.++|-.|..|..||-+..
T Consensus 41 ~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 41 VFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667899999999999999999999988754
No 17
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=48.09 E-value=58 Score=30.00 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh--hcCCChhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHH
Q 031181 92 TVLLYGGGAIVAVWLSSTIVGAI--NSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDI 153 (164)
Q Consensus 92 ~v~~~g~gaival~~~~~vl~AI--d~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i 153 (164)
.++.-.+|.++++.++.-+...+ -.+|++..++-.++-...++|.+++=.+ +|+|+..-+
T Consensus 80 ~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k--~~de~~~l~ 141 (356)
T COG4956 80 TILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADK--KRDEFLRLL 141 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhh--hhHHHHHhc
Confidence 44455577777777766666633 4578899999999999999999987554 455655433
No 18
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=45.52 E-value=38 Score=22.73 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=22.7
Q ss_pred HHHHHhccchhhhHHHHHHHHHHH-HHHHHHHhhhh
Q 031181 81 KEKWDAVENKSTVLLYGGGAIVAV-WLSSTIVGAIN 115 (164)
Q Consensus 81 qe~Wd~~e~k~~v~~~g~gaival-~~~~~vl~AId 115 (164)
+|.|++ +++++++..+|.++++ ++..+.-.++-
T Consensus 1 ~e~~~~--~~~~iiG~~~G~ila~l~l~~GF~~tl~ 34 (51)
T PF10031_consen 1 MEFWKN--HRGKIIGGLIGLILALLILTFGFWKTLF 34 (51)
T ss_pred ChHHHH--CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466775 6667788788888875 56666666653
No 19
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=43.89 E-value=58 Score=27.31 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=28.4
Q ss_pred CccchhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhh-hhcCCChhHH
Q 031181 69 STVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGA-INSVPLLPKL 123 (164)
Q Consensus 69 ss~~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~vl~A-Id~IPLlp~l 123 (164)
-..+.+|+++..++.=...-....++++ +..++++.+....+.. +|-+|++..+
T Consensus 164 G~~s~~e~f~~~~~~n~~~tW~lR~~G~-llmf~G~~~~~~~l~~l~~~~P~lg~l 218 (248)
T PF07787_consen 164 GKVSAEEMFAKEHSANNTLTWILRFIGW-LLMFIGFFLLFSPLYTLVDWIPLLGNL 218 (248)
T ss_pred CCcCHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhceeech
Confidence 3457788888654321111112222322 3334455666666655 5889998863
No 20
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=43.05 E-value=40 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhc
Q 031181 100 AIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (164)
Q Consensus 100 aival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLL 141 (164)
++|++...-+++.++.+=-+++-+|-++-+..-|||...-++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777888888888899999999999999999876554
No 21
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=42.71 E-value=27 Score=25.61 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=28.1
Q ss_pred cCCChhHHHHHhhhhhhhhhhhhhhc-cchhHHHHHHHHHHHH
Q 031181 116 SVPLLPKLLELIGLGYTGWFVYRYLL-FKSSRKELATDIEALK 157 (164)
Q Consensus 116 ~IPLlp~llELVGlgyt~WFvyRyLL-f~~~R~eL~~~i~~lk 157 (164)
..|.+..++--||+.++.||..--.. .|.+|.-+.+-+-++.
T Consensus 17 vfPhLttvLl~iG~fftAwFf~~~VtStKy~r~l~KELlIsl~ 59 (79)
T KOG4452|consen 17 VFPHLTTVLLGIGLFFTAWFFMIQVTSTKYNRNLLKELLISLT 59 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHheeEecchhhHHHHHHHHHHHH
Confidence 36888888899999999998654333 5566654444444433
No 22
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=41.97 E-value=34 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccc
Q 031181 107 SSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFK 143 (164)
Q Consensus 107 ~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~ 143 (164)
..++-.-+..-|.+-.++.++|-.|..|..|+-+..+
T Consensus 58 ~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 58 ALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444567888999999999999999999999977744
No 23
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=38.89 E-value=46 Score=31.87 Aligned_cols=17 Identities=24% Similarity=0.685 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHhcc
Q 031181 72 DADELFSDLKEKWDAVE 88 (164)
Q Consensus 72 ~~~Ei~~~lqe~Wd~~e 88 (164)
..+++++++++.|.++.
T Consensus 4 ~~~~~~~~l~~~w~~l~ 20 (552)
T PRK07193 4 LMNDMLDKLKQKWSPFQ 20 (552)
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 34689999999999884
No 24
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=38.85 E-value=81 Score=24.44 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCCccchhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhhhhcC
Q 031181 66 EETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117 (164)
Q Consensus 66 ~e~ss~~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~vl~AId~I 117 (164)
|.+|+-....+++.+|+.-. |-..++++.++++.++++..+.+.+-+.+
T Consensus 21 e~PS~G~g~g~~~tik~Y~~---dg~~llgL~i~a~aFi~Va~~a~~ty~Ei 69 (104)
T TIGR03745 21 EAPSRGGGSGIMQTIKNYGY---DGGILLGLLIAAIAFIGVAYHALGTYHEI 69 (104)
T ss_pred CCCCCCCCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555679999988766 46778888889999999988888877665
No 25
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=38.62 E-value=48 Score=22.72 Aligned_cols=17 Identities=41% Similarity=0.874 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhhccchh
Q 031181 129 LGYTGWFVYRYLLFKSS 145 (164)
Q Consensus 129 lgyt~WFvyRyLLf~~~ 145 (164)
+.|-.||+|+.++|..+
T Consensus 24 ~~~F~~F~~Kqilfr~~ 40 (54)
T PF06716_consen 24 LVVFIWFVYKQILFRNN 40 (54)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 45788999999998654
No 26
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=37.33 E-value=93 Score=31.44 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCChhHHH----HHhhhhhhhhhhhhhhccchhHHHHHHHHHH
Q 031181 95 LYGGGAIVAVWLSSTIVGAINSVPLLPKLL----ELIGLGYTGWFVYRYLLFKSSRKELATDIEA 155 (164)
Q Consensus 95 ~~g~gaival~~~~~vl~AId~IPLlp~ll----ELVGlgyt~WFvyRyLLf~~~R~eL~~~i~~ 155 (164)
.+-+..+++++++..+++.-+.+|...-.. =++|++++.||-.|.+ +.++|+|....|+.
T Consensus 7 ~~p~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrrf-r~Pt~~ea~~RLe~ 70 (820)
T PF13779_consen 7 LWPLLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRRF-RWPTRAEALRRLER 70 (820)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHhh
Confidence 344566777777777788888887754333 3456666666666664 88999999998875
No 27
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=36.75 E-value=1.3e+02 Score=23.33 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=35.1
Q ss_pred CCccchhHHHHHHHHHHHhccchh------hhHHHHHHHHHHHHHHHHHHhhhhcCCChh--HHHHHhhhhhhhhhhhhh
Q 031181 68 TSTVDADELFSDLKEKWDAVENKS------TVLLYGGGAIVAVWLSSTIVGAINSVPLLP--KLLELIGLGYTGWFVYRY 139 (164)
Q Consensus 68 ~ss~~~~Ei~~~lqe~Wd~~e~k~------~v~~~g~gaival~~~~~vl~AId~IPLlp--~llELVGlgyt~WFvyRy 139 (164)
....+..|.++.++ |++.++-. --+++|+++-+++-+...+... .++.-. ++.=+++.....|+..||
T Consensus 14 ~~~~t~~~A~ksi~--~~df~~~~~iPCfR~slL~Gi~~G~~vG~~~fl~~~--~~~~A~nwavgsF~l~s~~~we~Cr~ 89 (118)
T PF12597_consen 14 QERPTLSDAVKSIK--LSDFRNVHKIPCFRDSLLYGIAGGFGVGGLRFLFTS--NPRKAANWAVGSFFLGSLGSWEYCRY 89 (118)
T ss_pred CCCCcHHHHHHhcC--HHHHhHHhcCCcHHHHHHHHHHHHHHHHhhhhcccC--CCccchhhhhHHHHHHHHHHHHHHHH
Confidence 44556778888876 77765411 1233443333333322222222 111111 233344555566888888
Q ss_pred hccchh
Q 031181 140 LLFKSS 145 (164)
Q Consensus 140 LLf~~~ 145 (164)
--.++.
T Consensus 90 ~r~~~~ 95 (118)
T PF12597_consen 90 NRRKER 95 (118)
T ss_pred HHHHHH
Confidence 754443
No 28
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=35.76 E-value=52 Score=23.79 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=20.3
Q ss_pred HHHHHHHhc-cc--hhhhHHHHHHHHHHHHHH
Q 031181 79 DLKEKWDAV-EN--KSTVLLYGGGAIVAVWLS 107 (164)
Q Consensus 79 ~lqe~Wd~~-e~--k~~v~~~g~gaival~~~ 107 (164)
.+.++||.- +| +....+.++|+++.+++.
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~f 48 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFF 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 789999986 44 335566667777777654
No 29
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=34.82 E-value=1.2e+02 Score=19.36 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHhhhhcCCChhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHHHHHHHhh
Q 031181 110 IVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKI 160 (164)
Q Consensus 110 vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i~~lk~~I 160 (164)
+|+.++++|+=-..|+=-|||-++-+..++ -..++=+++...+-.-|+++
T Consensus 2 iL~~L~~l~it~~~L~~T~IGk~V~~l~k~-~~~~~i~~~A~~Li~~Wk~~ 51 (53)
T PF08711_consen 2 ILKVLEKLPITVELLKSTGIGKAVNKLRKH-SENPEIRKLAKELIKKWKRI 51 (53)
T ss_dssp HHHHHHCSS-SHHHHHHHSHHHHHHHHHHC-TS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHhCChhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHh
Confidence 578899999989999999999999999999 33333345555555555544
No 30
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=34.24 E-value=74 Score=20.33 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=11.3
Q ss_pred HHHHHHHhc-cchhhhHHHH
Q 031181 79 DLKEKWDAV-ENKSTVLLYG 97 (164)
Q Consensus 79 ~lqe~Wd~~-e~k~~v~~~g 97 (164)
..++.|.+. +||.++++.+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~ 23 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLI 23 (56)
T ss_pred HHHHHHHHHHhCchHHHHHH
Confidence 346667666 5676666533
No 31
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=34.20 E-value=1.1e+02 Score=25.56 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhcCCChh-----HHHHHhhhhhhhhhhhhh
Q 031181 90 KSTVLLYGGGAIVAVWLSSTIVGAINSVPLLP-----KLLELIGLGYTGWFVYRY 139 (164)
Q Consensus 90 k~~v~~~g~gaival~~~~~vl~AId~IPLlp-----~llELVGlgyt~WFvyRy 139 (164)
....++++++++++-|+.++++...-..+.+| ..+.-+=.....|++.-+
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~f 193 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLVSLF 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33778889999999999999888766665554 333333333344555443
No 32
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=34.02 E-value=1.7e+02 Score=20.69 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCccchhHHHHHHHHHHHhccc--hhhh-HHHHHHHHHHHHHHHHHHhhh
Q 031181 67 ETSTVDADELFSDLKEKWDAVEN--KSTV-LLYGGGAIVAVWLSSTIVGAI 114 (164)
Q Consensus 67 e~ss~~~~Ei~~~lqe~Wd~~e~--k~~v-~~~g~gaival~~~~~vl~AI 114 (164)
||...+++|++..+..+=.+... +... ...++.+++++-+.++.++++
T Consensus 5 ESDnETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 5 ESDNETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred ccccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555788999888655433333 2222 223344444566677777765
No 33
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=33.76 E-value=41 Score=24.37 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=16.3
Q ss_pred CccchhHHHHHHHHHHHhc
Q 031181 69 STVDADELFSDLKEKWDAV 87 (164)
Q Consensus 69 ss~~~~Ei~~~lqe~Wd~~ 87 (164)
+..+.+.+++.+|+.||.+
T Consensus 2 ~~~SIP~lL~~lQnEWDa~ 20 (70)
T PF08606_consen 2 TATSIPSLLSTLQNEWDAL 20 (70)
T ss_pred CcCcHHHHHHHHHHHHHHH
Confidence 4557789999999999987
No 34
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=33.42 E-value=60 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=16.3
Q ss_pred HHHHHHHhc-cchhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 031181 79 DLKEKWDAV-ENKSTVLLYGGGAIVAVWLSSTIVGAINS 116 (164)
Q Consensus 79 ~lqe~Wd~~-e~k~~v~~~g~gaival~~~~~vl~AId~ 116 (164)
.+++.|+++ +.-+.+++.++-.+++.|+...+-+.+++
T Consensus 3 ~~~~~~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~~ 41 (53)
T PF05552_consen 3 PLSGMLDQIIAYLPNIVGAILILIVGWWVAKFVRKLVRR 41 (53)
T ss_dssp ----------GGHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 33445566556666666666655555443
No 35
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=32.93 E-value=2e+02 Score=21.04 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=18.2
Q ss_pred hhhhhhhh-----ccchhHHHHHHHHHHHHHh
Q 031181 133 GWFVYRYL-----LFKSSRKELATDIEALKKK 159 (164)
Q Consensus 133 ~WFvyRyL-----Lf~~~R~eL~~~i~~lk~~ 159 (164)
.|+..|++ .+.+.++|+.++++.+|++
T Consensus 90 ~~~~~~~l~~~~~~~~~t~~~l~~d~~~lk~~ 121 (121)
T PF07332_consen 90 LLIGRRRLRRAPPPFEETIAELKEDIAALKER 121 (121)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcC
Confidence 34555544 4567788888888888763
No 36
>COG4280 Predicted membrane protein [Function unknown]
Probab=32.19 E-value=82 Score=27.52 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=37.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhcc
Q 031181 88 ENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142 (164)
Q Consensus 88 e~k~~v~~~g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf 142 (164)
.++.++.+-+.|..+.+.++..+-.-+--+|+= .+++|-=+-..||.||++-+
T Consensus 32 ~wr~al~ga~lglalvl~l~lvlGk~L~lvPln--~lqiv~gvLLllFG~rw~Rs 84 (236)
T COG4280 32 KWRLALIGAVLGLALVLILTLVLGKLLYLVPLN--YLQIVSGVLLLLFGYRWIRS 84 (236)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHccceeeeech--HHHHHHHHHHHHHHHHHHHH
Confidence 456677776677666666666666667777764 56777667788999998743
No 37
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=30.55 E-value=25 Score=24.77 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=13.7
Q ss_pred hhhhhhhhhhhhhhccchh
Q 031181 127 IGLGYTGWFVYRYLLFKSS 145 (164)
Q Consensus 127 VGlgyt~WFvyRyLLf~~~ 145 (164)
+|++..++|.+|+|+..++
T Consensus 15 ~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 15 VAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4555677999999976543
No 38
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=30.02 E-value=2e+02 Score=20.16 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=23.3
Q ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHH
Q 031181 129 LGYTGWFVYRYLLFKSSRKELATDIEALKK 158 (164)
Q Consensus 129 lgyt~WFvyRyLLf~~~R~eL~~~i~~lk~ 158 (164)
++..+=+..-|++++.-|++..+++.+..+
T Consensus 38 ~A~vis~~lS~~ll~~~R~~~~~~ia~~~~ 67 (69)
T PF14012_consen 38 LALVISMPLSYVLLRRLRDRASADIAARDE 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455677889999999999999987654
No 39
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=29.89 E-value=2.3e+02 Score=20.98 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHH--HHh-----hhhcCCChhHHHHHhhhh-hhh-hhhhhhhc---cchhHHHHHHHHHHHHHhh
Q 031181 96 YGGGAIVAVWLSST--IVG-----AINSVPLLPKLLELIGLG-YTG-WFVYRYLL---FKSSRKELATDIEALKKKI 160 (164)
Q Consensus 96 ~g~gaival~~~~~--vl~-----AId~IPLlp~llELVGlg-yt~-WFvyRyLL---f~~~R~eL~~~i~~lk~~I 160 (164)
.++.++.++|++.- .+. .=.-+|++|-.+ ||-+| |+. --.||=.. ..+..+||.++|++-|++.
T Consensus 9 ~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP~~~-Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dL 84 (91)
T PF08285_consen 9 SALLLLSALWLALLLGLLPLPPEPQQEIIPYLPFYA-LVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADL 84 (91)
T ss_pred HHHHHHHHHHHHHHHccCCCCchhHHHHHHHhhHHH-HHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 34566777886532 222 111355555332 22221 222 22333334 4577899999999998875
No 40
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=29.12 E-value=1e+02 Score=26.96 Aligned_cols=43 Identities=16% Similarity=0.382 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhhh
Q 031181 72 DADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAI 114 (164)
Q Consensus 72 ~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~vl~AI 114 (164)
+.....+.+++.-|+++..+..+..|+++++++.+..+++-.+
T Consensus 128 e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 128 ENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVMTI 170 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445666677777777888888899999999888877777654
No 41
>PRK09848 glucuronide transporter; Provisional
Probab=28.52 E-value=1.3e+02 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=25.9
Q ss_pred HHhhhhhhhhhhhhhhccchhHHHHHHHHHHHHH
Q 031181 125 ELIGLGYTGWFVYRYLLFKSSRKELATDIEALKK 158 (164)
Q Consensus 125 ELVGlgyt~WFvyRyLLf~~~R~eL~~~i~~lk~ 158 (164)
-.+++.....+.++|=+.+++.+|+.+++++.++
T Consensus 413 p~~~~~~~~~~~~~y~l~~~~~~~~~~~l~~~~~ 446 (448)
T PRK09848 413 PCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKK 446 (448)
T ss_pred HHHHHHHHHHHHHHeeCCHHHHHHHHHHHHHhhh
Confidence 3345555666778899999999999999987654
No 42
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=26.73 E-value=79 Score=26.56 Aligned_cols=68 Identities=18% Similarity=0.262 Sum_probs=49.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhh--hcCCChhHHHHHhhhhhhhhhhhh-------hhccchhHHHHHHHHHHH
Q 031181 89 NKSTVLLYGGGAIVAVWLSSTIVGAI--NSVPLLPKLLELIGLGYTGWFVYR-------YLLFKSSRKELATDIEAL 156 (164)
Q Consensus 89 ~k~~v~~~g~gaival~~~~~vl~AI--d~IPLlp~llELVGlgyt~WFvyR-------yLLf~~~R~eL~~~i~~l 156 (164)
..+....+++=.++++|...+.-.++ .+=|.--.++-.-|++++.||.+- +.+.+=-|++++..++.+
T Consensus 172 s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~ia~~v~~~~R~kvv~~~~~~ 248 (257)
T PF10192_consen 172 SWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFGIIFSLWFLSLPVIVIIAHFVDPWVREKVVTGGNLL 248 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34444444555667788888888888 888888899999999999999853 446666777777765544
No 43
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=25.34 E-value=1e+02 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHhccchhhh
Q 031181 72 DADELFSDLKEKWDAVENKSTV 93 (164)
Q Consensus 72 ~~~Ei~~~lqe~Wd~~e~k~~v 93 (164)
...++++++++.|.++..+..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~~qk~ 25 (542)
T PRK06007 4 KLKELMEKLKEFLQKLSKKRKI 25 (542)
T ss_pred hHHHHHHHHHHHHHhcChhhHH
Confidence 3567899999999988654433
No 44
>TIGR02849 spore_III_AD stage III sporulation protein AD. Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment has been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream.
Probab=25.28 E-value=1.8e+02 Score=22.21 Aligned_cols=60 Identities=25% Similarity=0.442 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHH---HHHHHhhhhc------CCC--hhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHHH
Q 031181 94 LLYGGGAIVAVWL---SSTIVGAINS------VPL--LPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIE 154 (164)
Q Consensus 94 ~~~g~gaival~~---~~~vl~AId~------IPL--lp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i~ 154 (164)
+..+.|.++.+.+ ...+++.+++ ++- +..++..+|+.|..-|... +-+...-+.+..+|+
T Consensus 5 lsl~agi~If~~~i~kl~~ii~~l~~l~~~a~i~~~Yi~~llKiiGIaYIaef~s~-iCkDAG~~aiAskIE 75 (101)
T TIGR02849 5 LSLIAGIVIFLFVMPKINAVVEVIQSLARKAGLDSLYLATVLKIIGIAYIAEFGSQ-ICKDAGEKAIASKIE 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHcChHHHHHHHH
Confidence 4455666666555 3445565554 343 7789999999999999753 444445555555554
No 45
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=24.58 E-value=65 Score=21.38 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=18.0
Q ss_pred HHHHhhhhhhhhhhhhhhccchhHHHHHHHH
Q 031181 123 LLELIGLGYTGWFVYRYLLFKSSRKELATDI 153 (164)
Q Consensus 123 llELVGlgyt~WFvyRyLLf~~~R~eL~~~i 153 (164)
+++.+|+||.+-|..- ++++.+|+|+...+
T Consensus 2 I~ki~gigii~~~l~~-vlk~~~~~e~a~~i 31 (58)
T PF06686_consen 2 ILKIVGIGIIAAFLAL-VLKQAGEPEYASLI 31 (58)
T ss_pred hHHHHHHHHHHHHHHH-HHHHcCChHHHHHH
Confidence 5677888888776643 33333347765544
No 46
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.09 E-value=72 Score=23.95 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=15.0
Q ss_pred Hhhhhhhhhhhhh----hhccchhHHHHHHHHHHH
Q 031181 126 LIGLGYTGWFVYR----YLLFKSSRKELATDIEAL 156 (164)
Q Consensus 126 LVGlgyt~WFvyR----yLLf~~~R~eL~~~i~~l 156 (164)
++.++|..||.-. |.-...+.+++-++++.+
T Consensus 12 l~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l 46 (105)
T PRK00888 12 LVWLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKL 46 (105)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777433 333334444444444333
No 47
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=23.53 E-value=1.6e+02 Score=24.46 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHH----HHHhhhhcC
Q 031181 75 ELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSS----TIVGAINSV 117 (164)
Q Consensus 75 Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~----~vl~AId~I 117 (164)
|+.+.+.+..++.-++... ..++|.++++|.++ ++-.++|++
T Consensus 65 ~~~~~v~~~l~~~~~~~~~-l~~ig~~~ll~tas~~~~~l~~aln~i 110 (263)
T TIGR00766 65 ALAQTLKNTMNTAVDARTT-VGLIGLATALYSGLNWMGNLREAISDV 110 (263)
T ss_pred HHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445444222222 23466677777544 444455554
No 48
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.17 E-value=1.2e+02 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=13.0
Q ss_pred hhhhhhhhhccc-hhHHHHHHHHHHHHHh
Q 031181 132 TGWFVYRYLLFK-SSRKELATDIEALKKK 159 (164)
Q Consensus 132 t~WFvyRyLLf~-~~R~eL~~~i~~lk~~ 159 (164)
.|||+.|+.-.+ .+..+|-+.++..+.+
T Consensus 12 iG~~~~r~~~~~~~~q~~l~~eL~~~k~e 40 (128)
T PF06295_consen 12 IGFLIGRLTSSNQQKQAKLEQELEQAKQE 40 (128)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 345555554433 2224555555555544
No 49
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.48 E-value=1.9e+02 Score=24.07 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhh
Q 031181 75 ELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRY 139 (164)
Q Consensus 75 Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~WFvyRy 139 (164)
..++.+...+|..+..--..-.++-+++++|.... . -+=.|.+.=-+|++.++||.+|.
T Consensus 77 ~wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~---~---~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 77 PWLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLF---P---AASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred hHHHhcccceeCCCcchHHHHHHHHHHHHHHHHHH---c---CCCCcchHHHHHHHHHHHHHHHh
Confidence 34444433477665443333333334555554433 1 22233444558999999999986
No 50
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.44 E-value=66 Score=29.89 Aligned_cols=44 Identities=32% Similarity=0.390 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhh------------hcCCChhHHHHHhhhhhhhhhhhhhh
Q 031181 97 GGGAIVAVWLSSTIVGAI------------NSVPLLPKLLELIGLGYTGWFVYRYL 140 (164)
Q Consensus 97 g~gaival~~~~~vl~AI------------d~IPLlp~llELVGlgyt~WFvyRyL 140 (164)
|+|+|++..++.+++..| -++=++|-|+|=||+.=+-|=.|-|=
T Consensus 224 g~~gfl~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~PLy~~~ 279 (372)
T KOG2927|consen 224 GAGGFLAFILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFKPLYEYH 279 (372)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhccccccc
Confidence 344455555444444444 34557888888888877765444443
No 51
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=21.27 E-value=2.7e+02 Score=20.37 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=18.0
Q ss_pred CCCCccchhHHHHHHHHHHHhc
Q 031181 66 EETSTVDADELFSDLKEKWDAV 87 (164)
Q Consensus 66 ~e~ss~~~~Ei~~~lqe~Wd~~ 87 (164)
.|.-..+.+|+++++++.|.+-
T Consensus 8 ~e~~~~~g~~~~~~iK~li~kG 29 (84)
T PF14242_consen 8 TEEFQVKGEELVDKIKELIKKG 29 (84)
T ss_pred cceeeecHHHHHHHHHHHHHhc
Confidence 4456667899999999999985
No 52
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=21.22 E-value=1.9e+02 Score=28.78 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=39.1
Q ss_pred ccceeeeccCCCCCCccchhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCChhHHHHHhhhhhhhh
Q 031181 55 FPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGW 134 (164)
Q Consensus 55 ~~~~~~~ass~~e~ss~~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~vl~AId~IPLlp~llELVGlgyt~W 134 (164)
...+.+|+++ ++ +=..|+.+++-. ++.+ +. ..|++ ..+++-|-.+|.+|=++=-+++++.+|
T Consensus 263 agiiVTR~~~-~~---~lg~~i~~Ql~~------~p~~-l~-~~a~~------l~~~~liPG~P~~~fl~la~~~~~~~~ 324 (697)
T PRK06012 263 AGIIVTRVSS-DG---DVGEQIVGQLFA------NPKA-LY-IAAGV------LFLLGLVPGMPHLPFLLLAGLLGFLAY 324 (697)
T ss_pred HheEEEecCC-cc---cHHHHHHHHHHc------CChH-HH-HHHHH------HHHHhhcCCChHHHHHHHHHHHHHHHH
Confidence 3456778766 33 345567776642 2222 22 22222 223455667777777776667788999
Q ss_pred hhhhh
Q 031181 135 FVYRY 139 (164)
Q Consensus 135 FvyRy 139 (164)
+.+|.
T Consensus 325 ~~~~~ 329 (697)
T PRK06012 325 RLRKR 329 (697)
T ss_pred HHHhh
Confidence 98775
No 53
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.39 E-value=1.9e+02 Score=22.34 Aligned_cols=19 Identities=32% Similarity=0.202 Sum_probs=15.1
Q ss_pred HHHHhhhhhhhhhhhhhhc
Q 031181 123 LLELIGLGYTGWFVYRYLL 141 (164)
Q Consensus 123 llELVGlgyt~WFvyRyLL 141 (164)
.+|+.+++|..+-.||.--
T Consensus 43 glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 43 GLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred HHHHHHHHHHHHHHHhhCc
Confidence 4599999999888887543
No 54
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=20.21 E-value=34 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.662 Sum_probs=0.0
Q ss_pred HHHHHHHHhccc
Q 031181 78 SDLKEKWDAVEN 89 (164)
Q Consensus 78 ~~lqe~Wd~~e~ 89 (164)
+.++++|+....
T Consensus 2 ~~l~~~w~~ls~ 13 (160)
T PF04612_consen 2 QQLKQWWQSLSP 13 (160)
T ss_dssp ------------
T ss_pred hHHHHHHHhCCH
Confidence 578899999843
Done!