Query 031181
Match_columns 164
No_of_seqs 138 out of 192
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpp_A IWS1, ECU08_0440; trans 32.9 1.6E+02 0.0056 22.4 8.6 91 72-162 36-140 (145)
2 2kyh_A KVAP, voltage-gated pot 29.6 1.1E+02 0.0037 22.8 5.6 67 82-150 13-83 (147)
3 2amj_A Modulator of drug activ 25.9 19 0.00065 27.7 0.7 43 120-162 162-204 (204)
4 2knc_B Integrin beta-3; transm 25.6 55 0.0019 22.6 3.0 30 128-157 23-52 (79)
5 1ors_C Potassium channel; volt 24.4 1.5E+02 0.005 21.3 5.3 48 95-142 9-57 (132)
6 3qmv_A Thioesterase, REDJ; alp 23.9 93 0.0032 23.1 4.2 48 68-115 95-144 (280)
7 3r0v_A Alpha/beta hydrolase fo 22.4 71 0.0024 22.6 3.2 40 70-109 68-107 (262)
8 3nfq_A Transcription factor IW 20.7 3.1E+02 0.011 21.5 8.0 82 76-157 55-149 (170)
9 3rpe_A MDAB, modulator of drug 20.5 50 0.0017 26.3 2.2 42 121-162 176-217 (218)
10 3bdv_A Uncharacterized protein 19.7 60 0.002 22.7 2.3 40 70-109 55-94 (191)
No 1
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=32.89 E-value=1.6e+02 Score=22.39 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=65.7
Q ss_pred chhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH-------------HHHHHhhhhcCCChhHHHHHhhhhhhhhhhhh
Q 031181 72 DADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWL-------------SSTIVGAINSVPLLPKLLELIGLGYTGWFVYR 138 (164)
Q Consensus 72 ~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~-------------~~~vl~AId~IPLlp~llELVGlgyt~WFvyR 138 (164)
.--.++..+.....+.+-..+++--|+--++..|+ =..+++++.++|+=..-|.=-|||-++-|.++
T Consensus 36 ~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 36 GKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhc
Confidence 33456666666666666667777777888888896 57799999999988888888999999999997
Q ss_pred hhc-cchhHHHHHHHHHHHHHhhcC
Q 031181 139 YLL-FKSSRKELATDIEALKKKIAG 162 (164)
Q Consensus 139 yLL-f~~~R~eL~~~i~~lk~~I~G 162 (164)
+=- ..++|+-.-+-|+....-|+|
T Consensus 116 ~~~et~~nk~la~~Li~~WsRpi~~ 140 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKWTNEVFK 140 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHHHHHHHHHHHHhC
Confidence 654 344555444445555555555
No 2
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=29.57 E-value=1.1e+02 Score=22.80 Aligned_cols=67 Identities=12% Similarity=-0.033 Sum_probs=40.9
Q ss_pred HHHHhccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCC-hhHHHHHhhhhhhhhhhhhhhc---cchhHHHHH
Q 031181 82 EKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPL-LPKLLELIGLGYTGWFVYRYLL---FKSSRKELA 150 (164)
Q Consensus 82 e~Wd~~e~k~~v~~~g~gaival~~~~~vl~AId~IPL-lp~llELVGlgyt~WFvyRyLL---f~~~R~eL~ 150 (164)
.-|+-+|++. .-+...+++.+.+...++++...++- ....++.+-....+||+.-|++ .+++|.+.+
T Consensus 13 ~~~~~~e~~~--f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~k~~f~ 83 (147)
T 2kyh_A 13 NIGDVMEHPL--VELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYV 83 (147)
T ss_dssp HHHHHHTCHH--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCch--HHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 3366677764 23333444445555566666665542 3457888888888899887766 355555544
No 3
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=25.89 E-value=19 Score=27.68 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=35.7
Q ss_pred hhHHHHHhhhhhhhhhhhhhhccchhHHHHHHHHHHHHHhhcC
Q 031181 120 LPKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAG 162 (164)
Q Consensus 120 lp~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i~~lk~~I~G 162 (164)
+-.+|+.+|+-+..+|....+-..++|++.+++.++.-++++|
T Consensus 162 l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (204)
T 2amj_A 162 FHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG 204 (204)
T ss_dssp HHHHHHHTTCEECCCEEECSTTTSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCeecceEEEeCCCCcHHHHHHHHHHHHHHHHhhC
Confidence 4678999999999999888877777999999998887766653
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.58 E-value=55 Score=22.63 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=20.5
Q ss_pred hhhhhhhhhhhhhccchhHHHHHHHHHHHH
Q 031181 128 GLGYTGWFVYRYLLFKSSRKELATDIEALK 157 (164)
Q Consensus 128 Glgyt~WFvyRyLLf~~~R~eL~~~i~~lk 157 (164)
.+|-..+++||.++.-.||+|...--++..
T Consensus 23 liGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 23 LIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888999998899988654444433
No 5
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=24.38 E-value=1.5e+02 Score=21.25 Aligned_cols=48 Identities=13% Similarity=-0.075 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCC-hhHHHHHhhhhhhhhhhhhhhcc
Q 031181 95 LYGGGAIVAVWLSSTIVGAINSVPL-LPKLLELIGLGYTGWFVYRYLLF 142 (164)
Q Consensus 95 ~~g~gaival~~~~~vl~AId~IPL-lp~llELVGlgyt~WFvyRyLLf 142 (164)
-+...+++.+-+...++++.+.++- ....++.+-...++||+.-|+++
T Consensus 9 ~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lR 57 (132)
T 1ors_C 9 ELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYR 57 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666677665543 56788899999999999988774
No 6
>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A*
Probab=23.91 E-value=93 Score=23.07 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=36.6
Q ss_pred CCccchhHHHHHHHHHHHhc--cchhhhHHHHHHHHHHHHHHHHHHhhhh
Q 031181 68 TSTVDADELFSDLKEKWDAV--ENKSTVLLYGGGAIVAVWLSSTIVGAIN 115 (164)
Q Consensus 68 ~ss~~~~Ei~~~lqe~Wd~~--e~k~~v~~~g~gaival~~~~~vl~AId 115 (164)
....+..+..+++.+..+.. .++..++|.-.|+.+++.+..-.-+-+.
T Consensus 95 ~~~~~~~~~a~~~~~~l~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~~~ 144 (280)
T 3qmv_A 95 RPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGA 144 (280)
T ss_dssp CCCCSHHHHHHHHHHHHHHTTCSSSEEEEEETHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHHcCC
Confidence 34456788999999988887 4567888888999999988776554444
No 7
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Probab=22.37 E-value=71 Score=22.64 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=32.3
Q ss_pred ccchhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Q 031181 70 TVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSST 109 (164)
Q Consensus 70 s~~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~ 109 (164)
..+.++..+++.+..+.++++..++|.-.|+.+++.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~l~G~S~Gg~ia~~~a~~ 107 (262)
T 3r0v_A 68 PYAVEREIEDLAAIIDAAGGAAFVFGMSSGAGLSLLAAAS 107 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCEEEEEETHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHHHHh
Confidence 4567888999998888888777888888999999887543
No 8
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=20.74 E-value=3.1e+02 Score=21.51 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHHHHH-------------HHHHHhhhhcCCChhHHHHHhhhhhhhhhhhhhhcc
Q 031181 76 LFSDLKEKWDAVENKSTVLLYGGGAIVAVWL-------------SSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142 (164)
Q Consensus 76 i~~~lqe~Wd~~e~k~~v~~~g~gaival~~-------------~~~vl~AId~IPLlp~llELVGlgyt~WFvyRyLLf 142 (164)
++..+.....+.+-...++--|+--++..|+ =..+++++.++|+=..-|.=-|||-.+-|.+++=--
T Consensus 55 mL~~V~~~L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~e 134 (170)
T 3nfq_A 55 LLPKVVSVLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRV 134 (170)
T ss_dssp HHHHHHHHHTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTS
T ss_pred hHHHHHHHHhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcc
Confidence 4444444444444444555556666788886 467999999999888999999999999998877543
Q ss_pred chhHHHHHHHHHHHH
Q 031181 143 KSSRKELATDIEALK 157 (164)
Q Consensus 143 ~~~R~eL~~~i~~lk 157 (164)
.++=+++..++=+-|
T Consensus 135 t~~nkrla~~Li~~W 149 (170)
T 3nfq_A 135 EAQLARLAEKLIAEW 149 (170)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 333334444444434
No 9
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=20.49 E-value=50 Score=26.33 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=36.5
Q ss_pred hHHHHHhhhhhhhhhhhhhhccchhHHHHHHHHHHHHHhhcC
Q 031181 121 PKLLELIGLGYTGWFVYRYLLFKSSRKELATDIEALKKKIAG 162 (164)
Q Consensus 121 p~llELVGlgyt~WFvyRyLLf~~~R~eL~~~i~~lk~~I~G 162 (164)
-.+|+.+|+-+.-+|+.-.....++|++.++++++.-++++.
T Consensus 176 ~~~l~f~G~~~l~~~~~~g~~~~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 176 HKANQFLGMKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp HHHHHHTTCEECCCEEECSTTTSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCEEeceEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 678999999999999988888899999999999887777654
No 10
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043}
Probab=19.72 E-value=60 Score=22.69 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=32.4
Q ss_pred ccchhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Q 031181 70 TVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSST 109 (164)
Q Consensus 70 s~~~~Ei~~~lqe~Wd~~e~k~~v~~~g~gaival~~~~~ 109 (164)
..+.++..+++.+..+..+++..++|.-.|+.+++.+..-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~ 94 (191)
T 3bdv_A 55 QADLDRWVLAIRRELSVCTQPVILIGHSFGALAACHVVQQ 94 (191)
T ss_dssp SCCHHHHHHHHHHHHHTCSSCEEEEEETHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHh
Confidence 3467888999999998888788888888999998877543
Done!