BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031182
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus
musculus GN=Letm1 PE=2 SV=1
Length = 738
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
D L L WLDL L+H +P+SLLILSRA Y SP ++TL LP+ + V
Sbjct: 391 DRLKGQLKQWLDLHLHHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 450
Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
+E + ++ KLE +QEE
Sbjct: 451 VAEVEGEKVDNKAKLEAT-LQEE 472
>sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial
OS=Gallus gallus GN=LETM1 PE=2 SV=1
Length = 752
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
+ L L WLDL LN +P+SLLILSRA Y SP + TL LP+ + V
Sbjct: 389 ERLREQLKQWLDLHLNQEIPTSLLILSRAMYLPDTLSPADQLKTTLQTLPESVAKEAQVK 448
Query: 133 TLPLEDSVLGSRRKLEFLEMQEEPIK 158
+E + ++ +LE +E I+
Sbjct: 449 VAEVEGEKVDNKARLEATLQEEAAIR 474
>sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial
OS=Rattus norvegicus GN=Letm1 PE=1 SV=1
Length = 739
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
D L L WLDL L H +P+SLLILSRA Y SP ++TL LP+ + V
Sbjct: 391 DRLKGQLKQWLDLHLYHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 450
Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
+E + ++ KLE +QEE
Sbjct: 451 AAEVEGEQVDNKAKLEAT-LQEE 472
>sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein 1, mitochondrial
OS=Homo sapiens GN=LETM1 PE=1 SV=1
Length = 739
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
D L L WLDL L+ +P+SLLILSRA Y SP ++TL LP+ + V
Sbjct: 392 DRLRGQLKQWLDLHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVK 451
Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
+E + ++ KLE +QEE
Sbjct: 452 VAEVEGEQVDNKAKLEAT-LQEE 473
>sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos
taurus GN=LETM1 PE=2 SV=1
Length = 732
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
D L L WL+L L+ +P+SLLILSRA Y SP ++TL LP+ + V
Sbjct: 378 DRLRGQLKQWLELHLHQEIPTSLLILSRAMYLPETLSPADQLKSTLQTLPEIVAKEAQVK 437
Query: 133 TLPLEDSVLGSRRKLEFLEMQEE 155
+E + ++ KLE +QEE
Sbjct: 438 VAEVEGEQVDNKAKLEAT-LQEE 459
>sp|Q1LY46|LETM1_DANRE LETM1 and EF-hand domain-containing protein 1, mitochondrial
OS=Danio rerio GN=letm1 PE=3 SV=2
Length = 757
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 79 LHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVTTLPLED 138
L WL+L LN +P+SLL+LSRA + SP + TL LP+ + V L+
Sbjct: 405 LKQWLELHLNQHIPTSLLLLSRAMFLPDTLSPADQLKTTLQNLPEIMAKEAQVKVAELDF 464
Query: 139 SVLGSRRKLEFLEMQEEPIK 158
S + ++ KLE +E I+
Sbjct: 465 SKVDNKTKLETTLQEEAAIR 484
>sp|Q7TNU7|LETM2_MOUSE LETM1 domain-containing protein LETM2, mitochondrial OS=Mus
musculus GN=Letm2 PE=2 SV=1
Length = 480
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFY 103
+ LC L WLDL L VP SLL+LSR FY
Sbjct: 358 EQLCQQLTGWLDLHLKENVPPSLLLLSRTFY 388
>sp|P91927|A60DA_DROME LETM1 and EF-hand domain-containing protein anon-60Da,
mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2
SV=2
Length = 1013
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 79 LHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKI 125
L +W+DLSLN VP +LL+LSR S ++ + T+ LPD +
Sbjct: 426 LKEWIDLSLNEQVPPTLLLLSRTMLISDDSITTDKLKETIRVLPDAV 472
>sp|Q5PQQ5|LETM2_RAT LETM1 domain-containing protein LETM2, mitochondrial OS=Rattus
norvegicus GN=Letm2 PE=2 SV=1
Length = 459
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFY 103
+ L L +WLDL L VP SLL+LSR FY
Sbjct: 362 EQLRQQLTEWLDLHLKENVPPSLLLLSRTFY 392
>sp|Q0VA06|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial
OS=Xenopus tropicalis GN=letm1 PE=2 SV=1
Length = 760
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFLPDKIVDTVGVT 132
D L L WL+L L+ +P+SLL+LSRA Y SP + TL LP+ + V
Sbjct: 394 DRLKEQLKQWLELHLDQEIPTSLLLLSRALYLPDTLSPADQLKTTLQTLPESVAKEAQVK 453
Query: 133 TLPLEDSVLGSRRKLEFLEMQEEPIK 158
+E + ++ KLE +EE I+
Sbjct: 454 VAAVECEKVDNKTKLEATLQEEEAIR 479
>sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mdm28 PE=2 SV=3
Length = 485
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 75 LCHGLHDWLDLSLNHTVPSSLLILSRAF-YASGEASPEK---AGQATLSFLPDKIVDTVG 130
L L WLD+ + H +PS +L+LS AF Y E + + A Q TL+ +PD++
Sbjct: 358 LKEELSVWLDMRIKHGIPSVILMLSNAFSYGYNEGTYDSRWDALQDTLASIPDELYHET- 416
Query: 131 VTTLPLEDSVLGSRRKLEFLE 151
V +P + + ++ +LE L
Sbjct: 417 VVDMPTKQ--VSNKERLEILR 435
>sp|Q2VYF4|LETM2_HUMAN LETM1 domain-containing protein LETM2, mitochondrial OS=Homo
sapiens GN=LETM2 PE=2 SV=2
Length = 491
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 73 DSLCHGLHDWLDLSLNHTVPSSLLILSRAFY 103
+ L L +W DL L VP SLL+LSR FY
Sbjct: 360 EQLRQQLTEWQDLHLKENVPPSLLLLSRTFY 390
>sp|P43256|HMDH2_ARATH 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Arabidopsis
thaliana GN=HMG2 PE=2 SV=1
Length = 562
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 31 FCSFK-----NWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDL 85
+CS K NWI GK+ CEA + ++ ++LK +++A+ ++L + + +
Sbjct: 368 YCSDKKASAVNWIEGRGKHVVCEAFIKAEIVEKVLKT--SVEALVELNTLKNLVGSAMAG 425
Query: 86 SLNHTVPSSLLILSRAFYASGE--ASPEKAGQATLSFLPDKIVDTVGVTTLPLEDSVLGS 143
SL S I+S F A+G+ A ++ LPD + V+ +E +G
Sbjct: 426 SLGGFNAHSSNIVSAVFIATGQDPAQNVESSHCMTMILPDGDDLHISVSMPCIEVGTVGG 485
Query: 144 RRKL 147
+L
Sbjct: 486 GTQL 489
>sp|Q7NMJ6|HIS7_GLOVI Imidazoleglycerol-phosphate dehydratase OS=Gloeobacter violaceus
(strain PCC 7421) GN=hisB PE=3 SV=1
Length = 197
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 57 TELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAG 114
T+L++E Y AV N S+ L W ++ +H + +S +RA + E P +AG
Sbjct: 133 TQLVREFYQ--AVVNNSSMTLHLRQWAGINSHHIIEASFKAFARALRLAVEIDPRRAG 188
>sp|Q606C9|CYSG_METCA Siroheme synthase OS=Methylococcus capsulatus (strain ATCC 33009 /
NCIMB 11132 / Bath) GN=cysG PE=3 SV=1
Length = 474
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 57 TELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQA 116
++L++ H T+ GL + H P S A G +K A
Sbjct: 374 SQLVQPHQTVVVYMGL----QGLPQICAELIRHGAPPSR---PAALIQQGTTRDQKVLTA 426
Query: 117 TLSFLPDKIVDT-VGVTTLPLEDSVLGSRRKLEFLEMQEE 155
TL LPDK+ D + TL + V+G R+KL + ++E
Sbjct: 427 TLETLPDKVADAGIKAPTLIIIGEVVGLRKKLAWYRSRQE 466
>sp|Q9T1Q3|DPOL_BPAPS Probable DNA polymerase OS=Acyrthosiphon pisum secondary
endosymbiont phage 1 GN=45 PE=3 SV=1
Length = 993
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 69 VANFDSLCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQATLSFL 121
V N D +HD L +L H +P +L +L F + + + +K G+A +S L
Sbjct: 84 VLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDKAKDKEGKALISLL 136
>sp|Q6MIV0|CLPB_BDEBA Chaperone protein ClpB OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=clpB PE=3 SV=1
Length = 855
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 40 KYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSSLLILS 99
+Y KY E +AAL + T +++E DA+ ++ GL + + V + I
Sbjct: 314 EYRKYIEKDAALERRFQTVMVEEPSVEDAI----TILRGLKE------KYEVHHGIRITD 363
Query: 100 RAFYASGEASPEKAGQATLSFLPDKIVDTV-------GVTTLPLEDSVLGSRRKLEFLEM 152
A ++ + S T FLPDK +D + G+ T + + V R+L L +
Sbjct: 364 AALVSAVKLSHR---YITNRFLPDKAIDLIDEAASKLGIETRSVPEEVDKIERELMQLRI 420
Query: 153 QEEPIK 158
++E +K
Sbjct: 421 EKEALK 426
>sp|Q9UTA7|YL8B_SCHPO Uncharacterized transcriptional regulatory protein C25B8.11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25B8.11 PE=4 SV=1
Length = 654
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 32 CSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTV 91
CSF N +KY S SK+ + +L Y D ++F H LHD L ++
Sbjct: 179 CSFDNMTVKYVSTS------SKSPVMYILDPAYENDRHSDFSRYDHALHDLLSTYIDEAT 232
Query: 92 PSSLLIL 98
+L+ L
Sbjct: 233 GRTLVNL 239
>sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YLH47 PE=1 SV=1
Length = 454
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 75 LCHGLHDWLDLSLNHTVPSSLLILSRAFYASGEASPEKAGQA---TLSFLPDKIVDTVGV 131
L L WL++ L +PS+LLI++ A+ S E A L +PD++ V V
Sbjct: 320 LYSNLRLWLNMRLKDKIPSTLLIMATAYNYGNVQSKESLYDALCDVLIGIPDELYHEVKV 379
Query: 132 TTLPLEDSVLGSRRKLEFLE 151
+ +++ +++KL+ L
Sbjct: 380 NVVKEDEA--SAKQKLKQLR 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,651,801
Number of Sequences: 539616
Number of extensions: 2235510
Number of successful extensions: 5291
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5273
Number of HSP's gapped (non-prelim): 25
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)