Query 031182
Match_columns 164
No_of_seqs 132 out of 182
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 16:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3skq_A Mitochondrial distribut 100.0 3.2E-34 1.1E-38 242.7 5.7 110 12-127 113-249 (249)
2 2do1_A Nuclear protein HCC-1; 95.7 0.015 5.2E-07 38.9 4.5 45 48-94 10-54 (55)
3 1zrj_A E1B-55KDA-associated pr 94.6 0.06 2.1E-06 35.3 4.9 37 47-84 9-45 (50)
4 2rnn_A E3 SUMO-protein ligase 94.6 0.21 7.3E-06 37.9 8.5 73 46-119 35-112 (114)
5 1h1j_S THO1 protein; SAP domai 93.5 0.14 4.7E-06 33.7 5.0 37 47-84 4-40 (51)
6 2kvu_A MKL/myocardin-like prot 93.3 0.12 4.2E-06 36.7 4.7 40 46-86 24-63 (75)
7 1jjr_A KU70, thyroid autoantig 87.2 0.55 1.9E-05 36.9 3.9 41 46-87 59-99 (151)
8 1jjr_A KU70, thyroid autoantig 83.1 0.23 8E-06 39.1 0.0 38 46-84 113-150 (151)
9 1jey_A KU70; double-strand DNA 47.9 3.8 0.00013 37.2 0.0 42 42-84 566-608 (609)
10 3skq_A Mitochondrial distribut 45.1 25 0.00087 29.6 4.6 46 38-84 83-130 (249)
11 1zbh_A 3'-5' exonuclease ERI1; 42.4 33 0.0011 28.0 4.8 39 45-84 23-61 (299)
12 3ajm_A Programmed cell death p 42.0 9.8 0.00034 31.6 1.6 17 111-127 100-116 (213)
13 2ahq_A Sigma-54, RNA polymeras 32.1 21 0.00071 24.8 1.7 31 49-80 36-67 (76)
14 12as_A Asparagine synthetase; 26.3 22 0.00075 31.2 1.2 30 63-94 251-290 (330)
15 3qu6_A IRF3 protein; helix-tur 26.2 31 0.0011 25.9 1.9 61 3-67 29-94 (116)
16 3uo9_A Glutaminase kidney isof 22.4 71 0.0024 29.7 3.9 80 41-121 74-164 (534)
17 1bb1_B Designed, thermostable 21.4 45 0.0015 20.3 1.6 18 145-162 2-19 (36)
18 2k27_A Paired box protein PAX- 21.0 1.3E+02 0.0044 21.5 4.4 44 50-94 101-147 (159)
19 3msx_B RHO GTPase-activating p 20.6 2.7E+02 0.0093 20.8 6.5 99 23-128 21-134 (201)
No 1
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=242.74 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=104.5
Q ss_pred ccccCCccchhhhccccccccccchhhhhhhhhhhhhhcCCHHHHHHHHHHhcCCccC-CChhHHHHHHHHHhhcccCCC
Q 031182 12 VRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKALITELLKEHYTIDAV-ANFDSLCHGLHDWLDLSLNHT 90 (164)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~EGvdsLS~~ELq~AC~ssRGmr~~-vs~e~Lr~qL~qWLdL~L~~~ 90 (164)
-|||.++|+|+.++.....|-++|.=|.+ |||++||.+||+.||++ |||++. +|+++||+||.+||+||++++
T Consensus 113 ~p~gt~~~LR~rLr~rl~~I~~DDr~I~~-----EGV~sLs~~ELr~AC~~-RGm~~~gls~e~LR~~L~~WL~Lsl~~~ 186 (249)
T 3skq_A 113 RPFGNDNMLRYQIRSKLKDIMNDDKTIDY-----EGVESLSQEELYQACVS-RGMKAYGVSKEDLVDNLKVWLELRLRQK 186 (249)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHHH-----HCGGGSCHHHHHHHHHH-TTCCCTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCChHHHHHHHHHHHHHHHHhhHHHHH-----hCcccCCHHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHHHHccCC
Confidence 48999999999999999999999998888 99999999999999996 999985 999999999999999999999
Q ss_pred CChHHHHHHhhhhcCCCC--------------------------ChHHhHHHHHhcCChhhHh
Q 031182 91 VPSSLLILSRAFYASGEA--------------------------SPEKAGQATLSFLPDKIVD 127 (164)
Q Consensus 91 IPssLLiLSrAf~~~~~~--------------------------s~~daLkatLSSLPDevv~ 127 (164)
||+|||||||||+|++.. ++||||.+|||||||+|||
T Consensus 187 vPssLLilSra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~vls~ipd~vyn 249 (249)
T 3skq_A 187 IPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQVLSSIPDPVYN 249 (249)
T ss_dssp CCHHHHHHHHGGGSSSCCCCCCEEEECHHHHTSSSCCHHHHHHHHHHHHHHHHHHHSCCTTTC
T ss_pred CCHHHHHHHHHHHccCcchhhhhhhccchhhhhhccchhhhhHHHHHHHHHHHHccCCccccC
Confidence 999999999999999852 5789999999999999996
No 2
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=95.67 E-value=0.015 Score=38.90 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=38.5
Q ss_pred hhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhhcccCCCCChH
Q 031182 48 EAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNHTVPSS 94 (164)
Q Consensus 48 vdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLdL~L~~~IPss 94 (164)
+..|+++||...|+. ||+.+.....+|-+.|.++++=. .+.+|+|
T Consensus 10 l~klkV~eLK~~L~~-rGL~~~G~KaeLieRL~~~l~~~-~~~~~~~ 54 (55)
T 2do1_A 10 LHKLKLAELKQECLA-RGLETKGIKQDLIHRLQAYLEEH-AESGPSS 54 (55)
T ss_dssp TTTSCHHHHHHHHHH-HTCCCCSCHHHHHHHHHHHHHHT-CCSCCCC
T ss_pred HHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhcC-cccccCC
Confidence 568999999999996 99998889999999999999877 3446653
No 3
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=94.63 E-value=0.06 Score=35.31 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=33.1
Q ss_pred hhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182 47 CEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD 84 (164)
Q Consensus 47 GvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd 84 (164)
.+..|++.||++.|+. ||+.+....++|-+.|.++++
T Consensus 9 ~~~klkV~eLK~eLk~-RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 9 DVRRLKVNELREELQR-RGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp CGGGSCHHHHHHHHHH-TTCCCCSCHHHHHHHHHHHHC
T ss_pred CHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHh
Confidence 4678999999999996 999988889999999999875
No 4
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.21 Score=37.87 Aligned_cols=73 Identities=8% Similarity=-0.001 Sum_probs=51.2
Q ss_pred hhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhhcccCC-CCChHHHHHHhhhh----cCCCCChHHhHHHHHh
Q 031182 46 ECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSLNH-TVPSSLLILSRAFY----ASGEASPEKAGQATLS 119 (164)
Q Consensus 46 EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLdL~L~~-~IPssLLiLSrAf~----~~~~~s~~daLkatLS 119 (164)
..+..|+++||...|++ +|+.+...+.+|-+.+.+||+-+.+. ..-+.-+.=.|++- .++..+.++.|-.+|.
T Consensus 35 ~~l~kLtVaELK~~cr~-~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alr 112 (114)
T 2rnn_A 35 TLMELLKVSELKDICRS-VSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALR 112 (114)
T ss_dssp HHHTTCCHHHHHHHHHH-TTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH-cCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 45788999999999996 99998899999999999999877753 23333333223221 2445566666655543
No 5
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=93.54 E-value=0.14 Score=33.68 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=32.4
Q ss_pred hhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182 47 CEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD 84 (164)
Q Consensus 47 GvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd 84 (164)
.+..|++.||.+.|+. ||+.+....++|-+.|.++.+
T Consensus 4 ~~~kltV~eLK~~Lk~-RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTK-RNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp SGGGCCHHHHHHHHHH-TTCCCCSSHHHHHHHHHHHHH
T ss_pred hHHHCcHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHH
Confidence 3578999999999996 999988889999999988754
No 6
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=93.32 E-value=0.12 Score=36.68 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=35.4
Q ss_pred hhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhhcc
Q 031182 46 ECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLS 86 (164)
Q Consensus 46 EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLdL~ 86 (164)
..+..|++.||++.|+. ||+.+.....+|-+.|.++++-.
T Consensus 24 ~~l~klkVaeLK~eLk~-RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 24 ANLDDMKVAELKQELKL-RSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTTTSCHHHHHHHHHH-TTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHcc
Confidence 45789999999999996 99998889999999999998653
No 7
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=87.20 E-value=0.55 Score=36.94 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=35.2
Q ss_pred hhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhhccc
Q 031182 46 ECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLDLSL 87 (164)
Q Consensus 46 EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLdL~L 87 (164)
..+..|+++||...|++ ||+.+....++|-+.|.+|++-..
T Consensus 59 g~L~kltV~eLK~~l~~-~gL~~~GkKadLI~Ri~~~l~~Kv 99 (151)
T 1jjr_A 59 GTLGKFTVPMLKEACRA-YGLKSGLKKQELLEALTKHFQDKV 99 (151)
T ss_dssp TCTTSSCHHHHHHHHHH-HTCCCCSSSHHHHHHHHHTTCC--
T ss_pred CcHHhccHHHHHHHHHH-cCCCCcccHHHHHHHHHHHHhhhc
Confidence 34789999999999996 999988999999999999987553
No 8
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=83.14 E-value=0.23 Score=39.07 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182 46 ECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD 84 (164)
Q Consensus 46 EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd 84 (164)
..+..|++.+|+..|++ ||+.+....++|-+.|.+|++
T Consensus 113 g~l~klTV~~Lk~~l~~-~gl~~~GkKaeLieRi~~~~~ 150 (151)
T 1jjr_A 113 GTLGKFTVPMLKEACRA-YGLKSGLKKQELLEALTKHFQ 150 (151)
T ss_dssp ---------------------------------------
T ss_pred CccccccHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHhc
Confidence 35788999999999996 998888899999999999986
No 9
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=47.89 E-value=3.8 Score=37.23 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhhhhh-hhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182 42 GKYSEC-EAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD 84 (164)
Q Consensus 42 ~~y~EG-vdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd 84 (164)
.++..| +.+||+++|++.|++ +|+.+....++|-+.+.+|++
T Consensus 566 ~~~~~g~l~~~tv~~Lk~~l~~-~~~~~~~kK~~li~~i~~~~~ 608 (609)
T 1jey_A 566 THISKGTLGKFTVPMLKEACRA-YGLKSGLKKQELLEALTKHFQ 608 (609)
T ss_dssp --------------------------------------------
T ss_pred HHHHCCCchhccHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHhc
Confidence 344555 889999999999996 998877889999999999875
No 10
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=45.13 E-value=25 Score=29.56 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=36.6
Q ss_pred hhhhhhhhh--hhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182 38 ILKYGKYSE--CEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD 84 (164)
Q Consensus 38 i~~~~~y~E--GvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd 84 (164)
|.+..+|.+ ++|+||.+.|...|+- .||....+..-||.+|+..+.
T Consensus 83 l~vaklF~de~tLdnLsr~qLvaLck~-m~L~p~gt~~~LR~rLr~rl~ 130 (249)
T 3skq_A 83 SAIAQMFKNDSVLDNLSRPQLAAMSKF-MSLRPFGNDNMLRYQIRSKLK 130 (249)
T ss_dssp HHHHTTSCHHHHHHHSCHHHHHHHHHH-TTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCHHHHHHHHHH-hCCCCCCChHHHHHHHHHHHH
Confidence 444444322 6899999999999996 999998899999999887653
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=42.36 E-value=33 Score=28.02 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=33.7
Q ss_pred hhhhhcCCHHHHHHHHHHhcCCccCCChhHHHHHHHHHhh
Q 031182 45 SECEAALSKALITELLKEHYTIDAVANFDSLCHGLHDWLD 84 (164)
Q Consensus 45 ~EGvdsLS~~ELq~AC~ssRGmr~~vs~e~Lr~qL~qWLd 84 (164)
+.-++.||.+||+..... .|+.+....+.|++.|++|+.
T Consensus 23 ~~~~~~m~~~~l~~~l~~-~~l~~~g~~~~l~~~l~~~~~ 61 (299)
T 1zbh_A 23 NGCINRMSKEELRAKLSE-FKLETRGVKDVLKKRLKNYYK 61 (299)
T ss_dssp HHHHHSCCHHHHHHHHHH-TTCCCCSCHHHHHHHHHHHHH
T ss_pred hchhhhccHHHHHHHHHH-cCCCCcccHHHHHHHHHHHHH
Confidence 345679999999999997 999887888999999999875
No 12
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=42.01 E-value=9.8 Score=31.56 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=14.8
Q ss_pred HHhHHHHHhcCChhhHh
Q 031182 111 EKAGQATLSFLPDKIVD 127 (164)
Q Consensus 111 ~daLkatLSSLPDevv~ 127 (164)
..+||.+||.||||+-+
T Consensus 100 A~~LK~iLSrIPdEI~d 116 (213)
T 3ajm_A 100 ARALKQILSKIPDEIND 116 (213)
T ss_dssp HHHHHHHHHTHHHHTTC
T ss_pred HHHHHHHHHhCchhhcc
Confidence 57899999999998755
No 13
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=32.12 E-value=21 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHhcCCccC-CChhHHHHHHH
Q 031182 49 AALSKALITELLKEHYTIDAV-ANFDSLCHGLH 80 (164)
Q Consensus 49 dsLS~~ELq~AC~ssRGmr~~-vs~e~Lr~qL~ 80 (164)
.-||++.|....+. .||... -|++.+|++|.
T Consensus 36 kPlSD~~I~~~L~~-~Gi~IaRRTVaKYRe~l~ 67 (76)
T 2ahq_A 36 KPYSDQEIANILKE-KGFKVARRTVAKYREMLG 67 (76)
T ss_dssp SCCCHHHHHHHHTT-TSSCCCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHH-cCCCccHHHHHHHHHHcC
Confidence 34999999999996 999975 79999999975
No 14
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=26.33 E-value=22 Score=31.19 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=26.5
Q ss_pred hcCCccCCChhHHHHHHH----------HHhhcccCCCCChH
Q 031182 63 HYTIDAVANFDSLCHGLH----------DWLDLSLNHTVPSS 94 (164)
Q Consensus 63 sRGmr~~vs~e~Lr~qL~----------qWLdL~L~~~IPss 94 (164)
|+||| |+++.|+.||. .|..+=++..+|.|
T Consensus 251 SMGIR--Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~T 290 (330)
T 12as_A 251 SMGIR--VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQT 290 (330)
T ss_dssp EEEEB--CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCE
T ss_pred cceEE--eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCcc
Confidence 79999 99999999997 68888888888876
No 15
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=26.20 E-value=31 Score=25.86 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=40.4
Q ss_pred ccccc-ccccccccCCccchhhhccccccccccchhhhhhhhhhhhhhcCCHHH----HHHHHHHhcCCc
Q 031182 3 WLASE-LAFKVRFLNNNFQPACCTWSRPYFCSFKNWILKYGKYSECEAALSKAL----ITELLKEHYTID 67 (164)
Q Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~y~EGvdsLS~~E----Lq~AC~ssRGmr 67 (164)
|+-.+ --|+||.-...-+.++ -....=|+.|-...|+|.||+|.-+.+. ++.|..++++++
T Consensus 29 W~d~~kt~FrIPWkH~~r~~~~----~~D~~IFkaWA~~~Gk~~~g~d~~dp~~WKtnfRcALn~~~~f~ 94 (116)
T 3qu6_A 29 WVNKSRTRFRIPWKHGLRQDAQ----QEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSAMNRKEGLR 94 (116)
T ss_dssp ECSTTSCEEEEECCC------------CCCSHHHHHHHHTTSCCBTTBCCCHHHHHHHHHHHHHTCTTEE
T ss_pred EEcCCCCEEEecCcCCCcCCcc----hhHHHHHHHHHHhcCcccCCCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 44333 4589998887777663 2366789999999999999999998776 667776655554
No 16
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Probab=22.43 E-value=71 Score=29.70 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=56.3
Q ss_pred hhhhhhhhhcCCHHHHHHHHHHhcCCccC-CChhHHHHHHHHHhhcc----------cCCCCChHHHHHHhhhhcCCCCC
Q 031182 41 YGKYSECEAALSKALITELLKEHYTIDAV-ANFDSLCHGLHDWLDLS----------LNHTVPSSLLILSRAFYASGEAS 109 (164)
Q Consensus 41 ~~~y~EGvdsLS~~ELq~AC~ssRGmr~~-vs~e~Lr~qL~qWLdL~----------L~~~IPssLLiLSrAf~~~~~~s 109 (164)
+.+|.||-+.++...+.+|.++ .||+.. ---.++-+.|+.+++=. .++-|.+.+.++.+||.-.=.++
T Consensus 74 f~~~~~~~~~i~~~~f~~~l~~-~Gl~~~DpRl~~~~~~l~~~~~~~~~~~~~d~~~F~~~i~~~~~li~~a~~~~~vip 152 (534)
T 3uo9_A 74 FYTIAEGQEKIPVHKFITALKS-TGLRTSDPRLKECMDMLRLTLQTTSDGVMLDKDLFKKCVQSNIVLLTQAFRRKFVIP 152 (534)
T ss_dssp HHHHHTTCSSEEHHHHHHHHHH-TTCCTTCGGGHHHHHHHHHHHHHCSSTTEECHHHHHHHHGGGHHHHHHHHHTCSSSS
T ss_pred HHHHhCCCcEeeHHHHHHHHHH-cCCCCCCchHHHHHHHHHHHhhccCccccccHHHHHHHhhccHHHHHHHHhcCCCcC
Confidence 5678999999999999999996 999964 22234455666665421 13456888999999998443456
Q ss_pred hHHhHHHHHhcC
Q 031182 110 PEKAGQATLSFL 121 (164)
Q Consensus 110 ~~daLkatLSSL 121 (164)
-.+.+++.|..+
T Consensus 153 df~~~~~~L~~i 164 (534)
T 3uo9_A 153 DFMSFTSHIDEL 164 (534)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666443
No 17
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=21.39 E-value=45 Score=20.26 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=13.5
Q ss_pred hhHHHhHhhhhhhHhhhh
Q 031182 145 RKLEFLEMQEEPIKVFDT 162 (164)
Q Consensus 145 ~KLevLkeQEElIkeE~e 162 (164)
.|+..+|+++..|++|-+
T Consensus 2 ekiaaikeeqaaieeeiq 19 (36)
T 1bb1_B 2 EKIAAIKEEQAAIEEEIQ 19 (36)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 377788888888887754
No 18
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.02 E-value=1.3e+02 Score=21.52 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHhcCCc---cCCChhHHHHHHHHHhhcccCCCCChH
Q 031182 50 ALSKALITELLKEHYTID---AVANFDSLCHGLHDWLDLSLNHTVPSS 94 (164)
Q Consensus 50 sLS~~ELq~AC~ssRGmr---~~vs~e~Lr~qL~qWLdL~L~~~IPss 94 (164)
.+|..+|...+.. +|+. ..+|...++.-|..|..--.+..||++
T Consensus 101 ~~s~~~i~~~l~~-~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~ 147 (159)
T 2k27_A 101 TMFAWEIRDRLLA-EGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSG 147 (159)
T ss_dssp SSCHHHHHHHHHH-HTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCC
T ss_pred cchHHHHHHHHHH-hcccccCCccCHHHHHHHHHHHhCCCccCcccCC
Confidence 5899999999985 7762 248999999999999998888887764
No 19
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=20.64 E-value=2.7e+02 Score=20.83 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=52.7
Q ss_pred hhcccccccc-ccchhhhhhhhhhhhhhcCC-----HHHHHHHHHHhcCCccC---CChhHHHHHHHHHhhcccCCCCCh
Q 031182 23 CCTWSRPYFC-SFKNWILKYGKYSECEAALS-----KALITELLKEHYTIDAV---ANFDSLCHGLHDWLDLSLNHTVPS 93 (164)
Q Consensus 23 ~~~~~~~~~~-~~~~~i~~~~~y~EGvdsLS-----~~ELq~AC~ssRGmr~~---vs~e~Lr~qL~qWLdL~L~~~IPs 93 (164)
|-+...|.+. +--..|..+|+..||+=-.+ ..+|+++.. +|-... .++-.+-.-|+.||. .+|.
T Consensus 21 ~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~--~~~~~~~~~~d~~~va~lLK~flr-----eLp~ 93 (201)
T 3msx_B 21 CENDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLN--SGVEVHLDCESIFVIASVLKDFLR-----NIPG 93 (201)
T ss_dssp SGGGCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHH--HTCCCCTTSSCHHHHHHHHHHHHH-----TSTT
T ss_pred hcCCCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhc--cCCCCCCCcccHHHHHHHHHHHHH-----hCCC
Confidence 4344455543 33346778888888886555 456666665 343321 344455556666663 2343
Q ss_pred HHHH------HHhhhhcCCCCChHHhHHHHHhcCChhhHhh
Q 031182 94 SLLI------LSRAFYASGEASPEKAGQATLSFLPDKIVDT 128 (164)
Q Consensus 94 sLLi------LSrAf~~~~~~s~~daLkatLSSLPDevv~e 128 (164)
.|+- +..+....+...-.++++..+.+||+.=++.
T Consensus 94 pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~LP~~n~~~ 134 (201)
T 3msx_B 94 SIFSSDLYDHWVSVMDQGNDEEKINTVQRLLDQLPRANVVL 134 (201)
T ss_dssp TTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHccccHHHHHHHHHHHHHHCCHHHHHH
Confidence 3331 1122222222233567888888999875543
Done!