BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031183
MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS
LSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG
SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS

High Scoring Gene Products

Symbol, full name Information P value
PLMT
phospholipid N-methyltransferase 		protein from Arabidopsis thaliana 2.7e-61

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031183
        (164 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025707 - symbol:PLMT "phospholipid N-methyltr...   627  2.7e-61   1


>TAIR|locus:2025707 [details] [associations]
            symbol:PLMT "phospholipid N-methyltransferase"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000773 "phosphatidyl-N-methylethanolamine
            N-methyltransferase activity" evidence=IDA] [GO:0008654
            "phospholipid biosynthetic process" evidence=IMP] [GO:0043231
            "intracellular membrane-bounded organelle" evidence=IDA]
            [GO:0080101 "phosphatidyl-N-dimethylethanolamine
            N-methyltransferase activity" evidence=IDA] InterPro:IPR024960
            InterPro:IPR007318 GO:GO:0043231 EMBL:CP002684 GO:GO:0008654
            EMBL:AC011713 GO:GO:0080101 GO:GO:0000773 PANTHER:PTHR15458
            Pfam:PF04191 EMBL:BT043493 IPI:IPI00524647 PIR:C96841
            RefSeq:NP_565246.1 RefSeq:NP_849916.2 UniGene:At.33872
            ProteinModelPortal:Q9SAH5 PRIDE:Q9SAH5 EnsemblPlants:AT1G80860.1
            EnsemblPlants:AT1G80860.2 GeneID:844425 KEGG:ath:AT1G80860
            TAIR:At1g80860 InParanoid:Q9SAH5 OMA:PWVTEFP PhylomeDB:Q9SAH5
            ProtClustDB:PLN02797 Genevestigator:Q9SAH5 Uniprot:Q9SAH5
        Length = 164

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 115/164 (70%), Positives = 132/164 (80%)

Query:     1 MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS 60
             MGL+AAIG+LLPFPFY+WLWT  Q+WVNLCG+ +DPS +MA VSH LK  Q +SL+SV+S
Sbjct:     1 MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query:    61 LSWXXXXXXXXXXXXXXXXNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVG 120
             LSW                NFRVYQLLGE+GTYYGVRFG NIPWVTEFPFG I+DPQYVG
Sbjct:    61 LSWPPPLYFWPLMAFGQFLNFRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVG 120

Query:   121 SILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRAKPLS 164
             SI+SLLACLSWVPF+YILLW LGY+FM+ LESKEDP  RAK +S
Sbjct:   121 SIMSLLACLSWVPFQYILLWSLGYVFMMFLESKEDPNARAKSIS 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.144   0.486    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       148   0.00068  104 3  11 22  0.40    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  165 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.53u 0.15s 12.68t   Elapsed:  00:00:01
  Total cpu time:  12.53u 0.15s 12.68t   Elapsed:  00:00:01
  Start:  Fri May 10 14:48:22 2013   End:  Fri May 10 14:48:23 2013

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