BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031183
         (164 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
           Excess Crm1 Inhibitor Leptomycin B
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With
           Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548e,k579q)-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1(k579a)-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1(k548a)-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
           Complex With Crm1- Ran-ranbp1
 pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
           With Crm1- Ran-ranbp1
 pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
           Complex With Crm1-ran-ranbp1
          Length = 1023

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
           Crm1 (Xpo1p)
          Length = 1033

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 211 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 253


>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
           Crm1-ran-ranbp1
 pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
           Crm1-Ran-Ranbp1
          Length = 1060

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
           Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
          Length = 1049

 Score = 29.3 bits (64), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 119 VGSILSLLACLSWVPFRYI----LLWILGYLFMIRLESKEDPATRAKPL 163
           V ++ SLL  L W+P+RYI    +L +L   FM        P TRA  L
Sbjct: 213 VATLESLLRYLHWIPYRYIYETNILELLSTKFMT------SPDTRAITL 255


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.144    0.486 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,148,360
Number of Sequences: 62578
Number of extensions: 190331
Number of successful extensions: 328
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)