Query 031183
Match_columns 164
No_of_seqs 108 out of 163
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02797 phosphatidyl-N-dimeth 100.0 4.5E-76 9.7E-81 472.2 11.9 164 1-164 1-164 (164)
2 KOG4142 Phospholipid methyltra 100.0 8.5E-40 1.8E-44 267.8 7.7 133 24-160 48-194 (208)
3 PF04191 PEMT: Phospholipid me 99.6 9.4E-17 2E-21 115.7 3.6 95 66-161 3-101 (106)
4 COG2020 STE14 Putative protein 98.5 2.1E-07 4.6E-12 75.3 5.9 91 67-161 71-166 (187)
5 PF04140 ICMT: Isoprenylcystei 98.1 4.6E-06 1E-10 61.3 4.3 62 71-135 3-66 (94)
6 COG1755 Uncharacterized protei 95.3 0.11 2.5E-06 43.1 8.1 110 28-142 35-147 (172)
7 KOG2628 Farnesyl cysteine-carb 94.9 0.077 1.7E-06 45.0 6.1 108 42-152 53-170 (201)
8 PF07298 NnrU: NnrU protein; 91.0 1.5 3.3E-05 36.1 8.0 94 24-136 23-123 (191)
9 PF02544 Steroid_dh: 3-oxo-5-a 90.3 0.46 9.9E-06 37.2 4.1 67 66-136 42-108 (150)
10 PLN02392 probable steroid redu 88.7 0.57 1.2E-05 40.9 4.0 69 63-136 149-217 (260)
11 PLN02560 enoyl-CoA reductase 76.6 4.9 0.00011 35.5 4.9 67 67-136 195-261 (308)
12 PLN03164 3-oxo-5-alpha-steroid 72.7 6.9 0.00015 35.4 4.9 64 67-135 212-278 (323)
13 PF06966 DUF1295: Protein of u 72.7 6.1 0.00013 33.1 4.3 65 66-135 121-186 (235)
14 PHA00739 V3 structural protein 51.3 4 8.7E-05 30.8 -0.5 11 112-122 51-61 (92)
15 KOG1638 Steroid reductase [Lip 50.6 51 0.0011 29.2 6.1 63 67-136 150-215 (257)
16 PF06281 DUF1035: Protein of u 48.3 5.6 0.00012 29.0 -0.1 10 112-121 32-41 (73)
17 KOG0301 Phospholipase A2-activ 21.6 59 0.0013 32.6 1.9 53 104-161 399-460 (745)
No 1
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=100.00 E-value=4.5e-76 Score=472.19 Aligned_cols=164 Identities=80% Similarity=1.540 Sum_probs=162.6
Q ss_pred CccchhhhhccchhHHHHHhhCchhHHHHhcCCCCchhHHHHHHHHHHHHhHhHhhhccCCCCCCcccccchhccccchh
Q 031183 1 MGLVAAIGILLPFPFYYWLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLN 80 (164)
Q Consensus 1 ~~~~~~~~~l~pf~~y~~l~t~p~~w~~~~g~~~~~~~~~a~~~~~~~ll~~l~~~~v~~~~~p~~~~g~~l~~~G~~L~ 80 (164)
||++|++|||+|||+|+|+|||||+|+|+|||++||+++|+++|||+|++||+++++|++|+|||++++++|+++||+||
T Consensus 1 ~~~~~~~~vL~Pfp~Y~~lwt~P~~w~~~c~~~~dp~~~ma~~sh~lk~lqfi~l~sva~f~~pppl~~~~L~aiGq~Lv 80 (164)
T PLN02797 1 MGLLAAVGVLLPFPFYWWLWTNPQSWVNLCGGGRDPSHVMAQVSHALKALQFLSLFSVASFSWPPPLYFWPLFAFGQFLN 80 (164)
T ss_pred CchhHhhhhccchHHHHHHHhCHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHhhHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhccCCccccc
Q 031183 81 FRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMIRLESKEDPATRA 160 (164)
Q Consensus 81 ~~s~~~LG~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~V~~~ial~~EePfT~a 160 (164)
++||++||++|||+||||||+|||||+|||||++||||+||||+++|+++|++++++++|+.+||++|+.|+.|||-|||
T Consensus 81 ~ss~~~LG~tGTYlGdyFGilm~~VT~FPFnv~~nPmY~GStl~fLg~al~~p~~~~~lW~lgYvfmm~iEs~edp~tra 160 (164)
T PLN02797 81 FRVYQLLGEAGTYYGVRFGKNIPWVTEFPFGVIRDPQYVGSILSLLACLSWVPFQYILLWCLGYVFMMFVESKEDPATRA 160 (164)
T ss_pred HHHHHHhCCceeeehhhhcccccccccCCCCCCCCcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHheeeccCCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 031183 161 KPLS 164 (164)
Q Consensus 161 ~~~~ 164 (164)
|++|
T Consensus 161 ~~~~ 164 (164)
T PLN02797 161 KSIS 164 (164)
T ss_pred ccCC
Confidence 9986
No 2
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=8.5e-40 Score=267.78 Aligned_cols=133 Identities=26% Similarity=0.278 Sum_probs=117.5
Q ss_pred hhHHHHhcCCCCchhHHHHHHHHHHHHhHhH-hhhc----cCCCCCCc------ccccchhccccchhhHHHHHhcccce
Q 031183 24 QTWVNLCGKGKDPSKIMAYVSHFLKLLQFIS-LYSV----SSLSWPPP------FYFYPLFGFGQFLNFRVYQLLGESGT 92 (164)
Q Consensus 24 ~~w~~~~g~~~~~~~~~a~~~~~~~ll~~l~-~~~v----~~~~~p~~------~~g~~l~~~G~~L~~~s~~~LG~~GT 92 (164)
++..|.||. |.++|..++.-|-++.+++ .+|. +|.+.... -+|.+++..|++||+|||++||+.||
T Consensus 48 ~~Ltk~~gg---~~kaCYmLaatIf~lgivRd~~y~~Al~~QPt~~~~~~p~~~~lg~alfglG~VLVLSSmykLG~~GT 124 (208)
T KOG4142|consen 48 RKLTKAFGG---PYKACYMLAATIFLLGIVRDHCYTQALLSQPTMESLDTPAAYSLGLALFGLGVVLVLSSMYKLGFAGT 124 (208)
T ss_pred HHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhccChHHHHHHHHHHhhhHHHHHHHHHHhccchh
Confidence 456788983 7899999999998888888 3332 33332221 26899999999999999999999999
Q ss_pred eecccccccCC-ceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHHHHHH--HhhccCCccccc
Q 031183 93 YYGVRFGTNIP-WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMI--RLESKEDPATRA 160 (164)
Q Consensus 93 Y~Gd~fGilm~-~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~V~~~--ial~~EePfT~a 160 (164)
|+||||||++| ||||||||+.|||||+|||++|||+|+++++|+ |++++..|+.+ ||++||||||++
T Consensus 125 yLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~gkpa-GLllt~~V~f~Y~iAL~~EEPFTA~ 194 (208)
T KOG4142|consen 125 YLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWALMHGKPA-GLLLTVLVAFTYIIALLYEEPFTAE 194 (208)
T ss_pred hhhhhhhhhhhhhcccccccccCCcccccchHHHHHHHHHcCCcc-hhHHHHHHHHHHHHHHHhcCchHHH
Confidence 99999999999 999999999999999999999999999999999 99999999999 999999999975
No 3
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.64 E-value=9.4e-17 Score=115.66 Aligned_cols=95 Identities=26% Similarity=0.336 Sum_probs=79.5
Q ss_pred cccccchhccccchhhHHHHHhcccceeecccccccCC-ceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHH
Q 031183 66 PFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP-WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGY 144 (164)
Q Consensus 66 ~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~-~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~ 144 (164)
..+|+.++++|..+.+++.+.+|..+++.|+.++...+ .||++||+++|||||.|.++..+|.++..+++. ++++++.
T Consensus 3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~-~l~~~~~ 81 (106)
T PF04191_consen 3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWL-GLLLAVL 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHH-HHHHHHH
Confidence 35799999999999999999999999999999998777 999999999999999999999999999999997 4444432
Q ss_pred HHH--H-HhhccCCcccccC
Q 031183 145 LFM--I-RLESKEDPATRAK 161 (164)
Q Consensus 145 V~~--~-ial~~EePfT~a~ 161 (164)
... . .+...||+..+++
T Consensus 82 ~~~~~~~~~~~~EE~~L~~~ 101 (106)
T PF04191_consen 82 AFLLYYIFIIRFEERFLERR 101 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 222 2 3444688877653
No 4
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.1e-07 Score=75.28 Aligned_cols=91 Identities=24% Similarity=0.239 Sum_probs=67.3
Q ss_pred ccccchhccccchhhHHHHHhcccceeecccccccCC--ceeeccCccCCCCchhHHHHHHHHHHhhccchhHHHHHHHH
Q 031183 67 FYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP--WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRYILLWILGY 144 (164)
Q Consensus 67 ~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~--~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~ 144 (164)
..|..++.+|..+-.++...+|-. .. +.--...+ .||+.||.++|||||.|.++..+|+.++.++.. ++.....
T Consensus 71 ~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~-~l~~~~~ 146 (187)
T COG2020 71 GLGLLLVGLGLALRLWAMRTLGRS-WT--VSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLW-ALLIFVV 146 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CC--cccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence 468888899999999999999876 21 11111223 899999999999999999999999999998887 3333333
Q ss_pred HHH-H--HhhccCCcccccC
Q 031183 145 LFM-I--RLESKEDPATRAK 161 (164)
Q Consensus 145 V~~-~--ial~~EePfT~a~ 161 (164)
+.. + +..+.||.+.+++
T Consensus 147 ~~~~~~~~~i~~EEr~L~~~ 166 (187)
T COG2020 147 LVALLFLFRIREEERYLRAE 166 (187)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 332 2 4666788887765
No 5
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=98.08 E-value=4.6e-06 Score=61.29 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=40.0
Q ss_pred chhccccchhhHHHHHhcccceeecccccccCC--ceeeccCccCCCCchhHHHHHHHHHHhhccch
Q 031183 71 PLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP--WVTEFPFGYIKDPQYVGSILSLLACLSWVPFR 135 (164)
Q Consensus 71 ~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~--~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~ 135 (164)
+++++|+.+-.+++..||- ++..+..+..| .||+.||.++|||+|.|-.+..+|......++
T Consensus 3 ~~~i~g~~lr~~a~~~LG~---~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~ 66 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGR---YFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNA 66 (94)
T ss_dssp --HHHHHHHHHHHHHHHGG---G--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHHccc---cCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHhH
Confidence 5678899999999999864 44455555665 99999999999999999666666655444333
No 6
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.30 E-value=0.11 Score=43.06 Aligned_cols=110 Identities=20% Similarity=0.179 Sum_probs=74.9
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHhHhHhhhccCCCCCCcccccchhccccchhhHHHHHhcccceeecccccccCC--ce
Q 031183 28 NLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP--WV 105 (164)
Q Consensus 28 ~~~g~~~~~~~~~a~~~~~~~ll~~l~~~~v~~~~~p~~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~--~V 105 (164)
+..||...+...+......++++.=- +.....|+|.+ .+|.+++.+-|.+-.++++.||.-=| .+-=++.| .|
T Consensus 35 ~E~G~~n~~~l~ilH~~~yls~ivE~-~~~~~~f~~~~-~~gl~~~l~s~~ll~~vi~~LG~iWt---tki~ilP~h~~v 109 (172)
T COG1755 35 KEYGKTNYKLLVILHTAFYLSCIVEA-WLNNTFFNWLS-IIGLALLLFSQILLYWVIKSLGEIWT---TKIMILPNHQIV 109 (172)
T ss_pred hhhCccccchHHHHHHHHHHHHHHHH-HHhCCcccccc-HHHHHHHHHHHHHHHHHHHHHhhhhe---eeEEEeCCceee
Confidence 35666666655544443333322111 23334677764 45789999999999999999987655 33334445 99
Q ss_pred eeccCccCCCCchhH-HHHHHHHHHhhccchhHHHHHH
Q 031183 106 TEFPFGYIKDPQYVG-SILSLLACLSWVPFRYILLWIL 142 (164)
Q Consensus 106 TgFPFnv~~~PmY~G-stl~~lG~al~~~s~~vgl~l~ 142 (164)
+++||..++||-|.= -+....|..+..+--.+.++.+
T Consensus 110 ~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~ 147 (172)
T COG1755 110 RSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFS 147 (172)
T ss_pred ccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8889999998885554344444
No 7
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.077 Score=44.99 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=70.8
Q ss_pred HHHHHHHHHhHhHhh-hccCCCCCCc-c----cccchhccccchhhHHHHHhcccceee-cccccccCC--ceeeccCcc
Q 031183 42 YVSHFLKLLQFISLY-SVSSLSWPPP-F----YFYPLFGFGQFLNFRVYQLLGESGTYY-GVRFGTNIP--WVTEFPFGY 112 (164)
Q Consensus 42 ~~~~~~~ll~~l~~~-~v~~~~~p~~-~----~g~~l~~~G~~L~~~s~~~LG~~GTY~-Gd~fGilm~--~VTgFPFnv 112 (164)
-+++.++.+-++--. .-+++.-..+ + .|..++..|+.+.-..+-..|-.=|=+ -+ -+..| .||+.||.+
T Consensus 53 ~la~~~s~lef~~e~~~fP~lk~~~~l~~~~~~gl~~~~~Ge~~r~~amitag~~f~H~va~--~k~~~h~lv~~GvY~y 130 (201)
T KOG2628|consen 53 WLAFLLSWLEFLLEILLFPSLKQNSWLWSRIGLGLLMLILGEALRKIAMITAGTSFTHYVAT--KKVSDHKLVTSGVYAY 130 (201)
T ss_pred HHHHHHHHHHHHHHHHhCcchheeeeeeeeccCceeeeehHHHHHHHHHHHHHHHHHHHHhh--ccccCceeEeccchhh
Confidence 345566666665522 2233322222 1 578888899988888887776432211 11 23334 899999999
Q ss_pred CCCCchhHHHHHHHHHHhhccchhHHHHHHHHHHHH-Hhhc
Q 031183 113 IKDPQYVGSILSLLACLSWVPFRYILLWILGYLFMI-RLES 152 (164)
Q Consensus 113 ~~~PmY~Gstl~~lG~al~~~s~~vgl~l~~~V~~~-ial~ 152 (164)
+|||-|.|-.+-.+|+-.+--.|. .++.-++|.+. ++.+
T Consensus 131 ~RHPsY~g~flw~~gtq~~L~npi-s~v~f~~V~w~ff~~R 170 (201)
T KOG2628|consen 131 VRHPSYVGFFLWAAGTQTMLCNPI-SLVAFLLVVWRFFADR 170 (201)
T ss_pred eeCchHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHhhh
Confidence 999999999999999988888887 55555555554 5544
No 8
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=90.98 E-value=1.5 Score=36.13 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=54.2
Q ss_pred hhHHHHhcCCCCchhHHHHHHHHHHHHhHhHhhhccC---CCCCCc----ccccchhccccchhhHHHHHhcccceeecc
Q 031183 24 QTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSS---LSWPPP----FYFYPLFGFGQFLNFRVYQLLGESGTYYGV 96 (164)
Q Consensus 24 ~~w~~~~g~~~~~~~~~a~~~~~~~ll~~l~~~~v~~---~~~p~~----~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd 96 (164)
+++.+..|+ +..+...++.-...+.-.+.-.-.++ .-|+++ .+...+..++.++..+++..-.
T Consensus 23 ~~l~~~lG~--~~y~~~ysllSl~~l~lii~~~~~a~~~~~lw~~~~~~~~l~~~lm~~a~il~~~a~~~~~-------- 92 (191)
T PF07298_consen 23 ARLIARLGE--RGYRGLYSLLSLAGLVLIIWGYRSAPFVPPLWDPPPWLRHLANLLMLLAFILLVAALFPPN-------- 92 (191)
T ss_pred HHHHHHcCc--hhhHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHHHHHHHHHHHHHHHhccCc--------
Confidence 455667775 33344444444444333333222222 346555 3456666777777777665444
Q ss_pred cccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183 97 RFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY 136 (164)
Q Consensus 97 ~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~ 136 (164)
.|. =+..+||||++|..+--++..+..+..+
T Consensus 93 ~~~---------i~r~~RHP~l~g~~lWA~aHLl~nGd~~ 123 (191)
T PF07298_consen 93 PFS---------IYRITRHPMLLGVLLWALAHLLANGDLA 123 (191)
T ss_pred chH---------HHHHhcCchHHHHHHHHHHHhhhcCcHH
Confidence 111 3556999999998886666667777765
No 9
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=90.26 E-value=0.46 Score=37.18 Aligned_cols=67 Identities=19% Similarity=0.084 Sum_probs=51.8
Q ss_pred cccccchhccccchhhHHHHHhcccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183 66 PFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY 136 (164)
Q Consensus 66 ~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~ 136 (164)
..+|++++++|...+..+=..|---+. -|+ -+. ..-+|+-|++++-|.|.+-++..+|+++..++..
T Consensus 42 ~~~g~~lf~~g~~~n~~~h~~L~~lr~-~~~-~~y--~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~ 108 (150)
T PF02544_consen 42 FIIGLALFLIGSIGNFYSHLILANLRK-PGS-KKY--KIPKGGLFEYVSCPHYFFEILIWIGFALLTGSWP 108 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-ccC-Cce--eCCCCCCcceeeehhhHHHHHHHHHHHHHHhhhh
Confidence 467999999999999999888862221 011 011 1456999999999999999999999999988654
No 10
>PLN02392 probable steroid reductase DET2
Probab=88.74 E-value=0.57 Score=40.85 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=52.5
Q ss_pred CCCcccccchhccccchhhHHHHHhcccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183 63 WPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY 136 (164)
Q Consensus 63 ~p~~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~ 136 (164)
|+...+|++++++|...|+.|=..|--=+. .|+ +...| +|+=|++++.|-|.|-++..+|+++...+..
T Consensus 149 ~~~~~iG~~lF~~g~~~N~~sh~~L~~LRk-~g~--~Y~iP--~GGlF~~VscPnYf~EileW~gfal~t~s~~ 217 (260)
T PLN02392 149 WWRFFGGLVVFLWGMRINVWSDRVLVGLKR-EGG--GYKVP--RGGWFELVSCPNYFGEIVEWLGWAVMTWSWA 217 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCC--eeECC--CCCCcCeEcCCcHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999998777643221 011 22223 6778999999999999999999999987665
No 11
>PLN02560 enoyl-CoA reductase
Probab=76.61 E-value=4.9 Score=35.54 Aligned_cols=67 Identities=18% Similarity=0.078 Sum_probs=49.7
Q ss_pred ccccchhccccchhhHHHHHhcccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183 67 FYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY 136 (164)
Q Consensus 67 ~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~ 136 (164)
.+|++++++|+..|+.+=..|--=+.=.|+. +.. .=.|+-|++++-|-|.+-+++-+|+++..++..
T Consensus 195 ~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~-~y~--IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~ 261 (308)
T PLN02560 195 KVGFGFGLVCQLANFYCHIILRNLRKPDGKG-GYQ--IPRGFLFNYVTCANYTTEIYQWLGFNIATQTVA 261 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-Cee--CCCCCCcCeecCCcHHHHHHHHHHHHHHHccHH
Confidence 6799999999999988877774322100110 111 225677999999999999999999999998765
No 12
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=72.73 E-value=6.9 Score=35.40 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=49.6
Q ss_pred ccccchhccccchhhHHHHHhcc-c--ceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccch
Q 031183 67 FYFYPLFGFGQFLNFRVYQLLGE-S--GTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFR 135 (164)
Q Consensus 67 ~~g~~l~~~G~~L~~~s~~~LG~-~--GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~ 135 (164)
++|++++++|...|..+=..|.- . .. |+ -+.. .=+|+-|++++-|-|.+-++..+|+++..++.
T Consensus 212 ~iGl~lFlig~~~n~~~H~iLa~LR~~k~--~~-~~Y~--IP~GglF~~VSCPHYf~EIliw~gfal~t~~~ 278 (323)
T PLN03164 212 WIGAAIFLWGWIHQYRCHAILGSLREHKK--QA-DEYV--IPYGDWFEMVSCPHYLAEIVIYAGLLIASGGT 278 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCCC--CC-ceEE--CCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCc
Confidence 57999999999999999888743 2 11 11 1122 23788999999999999999999999998643
No 13
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=72.68 E-value=6.1 Score=33.06 Aligned_cols=65 Identities=20% Similarity=0.095 Sum_probs=47.2
Q ss_pred cccccchhccccchhhHHHHHhcccceeecccccccCC-ceeeccCccCCCCchhHHHHHHHHHHhhccch
Q 031183 66 PFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP-WVTEFPFGYIKDPQYVGSILSLLACLSWVPFR 135 (164)
Q Consensus 66 ~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~-~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~ 135 (164)
+.+|.+++.+|.++-..+=+++=.-. -| ..... ..|..-|.++|||-|-|-++.-.|.++...+.
T Consensus 121 ~~~g~~l~~~g~~~E~~AD~Q~~~fk---~~--~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 121 DILGIALFLIGFLLETVADQQKYRFK---KD--PANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hC--cccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 36788899999888777765554210 00 01112 78999999999999999999999988887443
No 14
>PHA00739 V3 structural protein VP3
Probab=51.29 E-value=4 Score=30.83 Aligned_cols=11 Identities=55% Similarity=1.180 Sum_probs=9.4
Q ss_pred cCCCCchhHHH
Q 031183 112 YIKDPQYVGSI 122 (164)
Q Consensus 112 v~~~PmY~Gst 122 (164)
..+||||+||.
T Consensus 51 fv~np~Yvgss 61 (92)
T PHA00739 51 FVSNPQYVGSS 61 (92)
T ss_pred cccCcceecCC
Confidence 37999999985
No 15
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=50.57 E-value=51 Score=29.17 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=49.1
Q ss_pred ccccchhccccchhhHHHHHh---cccceeecccccccCCceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183 67 FYFYPLFGFGQFLNFRVYQLL---GESGTYYGVRFGTNIPWVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY 136 (164)
Q Consensus 67 ~~g~~l~~~G~~L~~~s~~~L---G~~GTY~Gd~fGilm~~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~ 136 (164)
.+|..|+..|.+.|+-|=.-| --+|- =|- ..=+|+-|.+++-|-|.|.++..+|+|+...+-.
T Consensus 150 liG~~lfv~Gm~iN~~sD~iL~~LRk~~~-----~~Y--kIP~GglFeyVsCPNYfgEiieW~Gyal~~ws~p 215 (257)
T KOG1638|consen 150 LIGVVLFVTGMLINIYSDNILRTLRKPGG-----KGY--KIPRGGLFEYVSCPNYFGEIIEWIGYALASWSLP 215 (257)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHhhcCCC-----Cce--ecCCCceEEEeecchHHHHHHHHHHHHHHhhhHH
Confidence 689999999999999886544 22221 111 2447999999999999999999999999986654
No 16
>PF06281 DUF1035: Protein of unknown function (DUF1035); InterPro: IPR009379 Sulfolobus virus-like particle SSV1 and its fusellovirus homologues can be found in many acidic (pH less than 4.0) hot springs (greater than 70 degrees C) around the world. SSV1 contains a 15.5-kb double-stranded DNA genome that encodes 34 proteins with greater than 50 amino acids []. A site-specific integrase and a DnaA-like protein have been previously identified by sequence homology, and three structural proteins have been isolated from purified virus and identified by N-terminal sequencing (VP1, VP2, and VP3).; GO: 0005198 structural molecule activity, 0016021 integral to membrane
Probab=48.32 E-value=5.6 Score=28.97 Aligned_cols=10 Identities=60% Similarity=1.358 Sum_probs=8.8
Q ss_pred cCCCCchhHH
Q 031183 112 YIKDPQYVGS 121 (164)
Q Consensus 112 v~~~PmY~Gs 121 (164)
..+||||+||
T Consensus 32 fv~nP~yvGS 41 (73)
T PF06281_consen 32 FVSNPQYVGS 41 (73)
T ss_pred ccCCcceecC
Confidence 4689999999
No 17
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=21.60 E-value=59 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=29.0
Q ss_pred ceeeccCccCCCCchhHHHHHHHHHHhhccchh------HHHHHHHHHHHH---HhhccCCcccccC
Q 031183 104 WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY------ILLWILGYLFMI---RLESKEDPATRAK 161 (164)
Q Consensus 104 ~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~------vgl~l~~~V~~~---ial~~EePfT~a~ 161 (164)
+--.-|||+.+||.-.--. +.-..+-|. +..++==...++ ...+||||||.+.
T Consensus 399 p~~kLPyN~sdnPy~AA~~-----FL~k~~Lp~sy~dqvv~FI~kNt~g~~l~~~~~~~~dpftg~~ 460 (745)
T KOG0301|consen 399 PPYKLPYNVSDNPYQAAQK-----FLEKNQLPVSYRDQVVKFILKNTDGLSLFAANPSYEDPFTGGG 460 (745)
T ss_pred CceecCcCCCCCHHHHHHH-----HHHHccCCHHHHHHHHHHHHHhcccccccccCCcccCccCCCc
Confidence 5556899999999754432 122233332 122222122222 3446999999765
Done!