Query 031183
Match_columns 164
No_of_seqs 108 out of 163
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 98.5 3.3E-08 1.1E-12 79.2 1.4 67 67-136 79-147 (194)
2 1xrd_A LH-1, light-harvesting 9.0 1.4E+02 0.0049 19.5 1.5 37 18-64 5-41 (52)
3 2dh2_A 4F2 cell-surface antige 8.7 1.1E+02 0.0038 25.9 1.1 16 88-103 256-271 (424)
4 4hps_A Pyrrolidone-carboxylate 6.5 1.3E+02 0.0046 24.3 0.6 31 82-116 8-41 (228)
5 1g5a_A Amylosucrase; glycosylt 5.8 1.9E+02 0.0064 26.2 1.2 16 88-103 480-495 (628)
6 3pct_A Class C acid phosphatas 5.6 1.5E+02 0.0051 24.3 0.4 15 22-36 87-101 (260)
7 1iu8_A Pyrrolidone-carboxylate 5.5 2E+02 0.0068 22.7 1.1 13 104-116 4-18 (206)
8 3ocu_A Lipoprotein E; hydrolas 5.4 1.6E+02 0.0054 24.2 0.4 13 107-119 210-222 (262)
9 3ix3_A Transcriptional activat 5.3 2.4E+02 0.0082 20.3 1.3 20 19-38 53-76 (173)
10 1jb0_K Photosystem 1 reaction 4.9 2.5E+02 0.0086 19.9 1.1 60 56-123 4-64 (83)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=98.46 E-value=3.3e-08 Score=79.23 Aligned_cols=67 Identities=13% Similarity=0.017 Sum_probs=54.1
Q ss_pred ccccchhccccchhhHHHHHhcccceeecccccccC-C-ceeeccCccCCCCchhHHHHHHHHHHhhccchh
Q 031183 67 FYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNI-P-WVTEFPFGYIKDPQYVGSILSLLACLSWVPFRY 136 (164)
Q Consensus 67 ~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm-~-~VTgFPFnv~~~PmY~Gstl~~lG~al~~~s~~ 136 (164)
.+|.++.++|..+...+...||-.-+- .-.... + .||++||+++|||||.|.++..+|.++..++..
T Consensus 79 ~~G~~l~l~G~~l~~~a~~~Lg~~f~~---~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~ 147 (194)
T 4a2n_B 79 LFALIVTFLNIGLFTKIHKDLGNNWSA---ILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWV 147 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGCCS---SCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc---CCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHH
Confidence 478889999999999999998754220 011122 3 999999999999999999999999999998886
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=9.05 E-value=1.4e+02 Score=19.53 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=21.2
Q ss_pred HHhhCchhHHHHhcCCCCchhHHHHHHHHHHHHhHhHhhhccCCCCC
Q 031183 18 WLWTQPQTWVNLCGKGKDPSKIMAYVSHFLKLLQFISLYSVSSLSWP 64 (164)
Q Consensus 18 ~l~t~p~~w~~~~g~~~~~~~~~a~~~~~~~ll~~l~~~~v~~~~~p 64 (164)
|+..+|++|.-. ...+--.+.++-|+.+.+.+.|||-
T Consensus 5 Wl~fDPrr~Lva----------~~~fl~vlAl~IHfilLSt~~fNWl 41 (52)
T 1xrd_A 5 WQLFDPRQALVG----------LATFLFVLALLIHFILLSTERFNWL 41 (52)
T ss_dssp GGTSSHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEchhHHHHH----------HHHHHHHHHHHHHHHhhccCCcccc
Confidence 555666666432 2233334555666667777777773
No 3
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=8.65 E-value=1.1e+02 Score=25.94 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.2
Q ss_pred cccceeecccccccCC
Q 031183 88 GESGTYYGVRFGTNIP 103 (164)
Q Consensus 88 G~~GTY~Gd~fGilm~ 103 (164)
|+.-.|+|+|+|...+
T Consensus 256 G~P~iY~GeE~G~~~~ 271 (424)
T 2dh2_A 256 GTPVFSYGDEIGLDAA 271 (424)
T ss_dssp SEEEEETTGGGTCCGG
T ss_pred CCeEEEeceecCCcCC
Confidence 6777899999998763
No 4
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=6.48 E-value=1.3e+02 Score=24.31 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=13.1
Q ss_pred HHHHHhcccceeecccccccCC-ceeec-cCc-cCCCC
Q 031183 82 RVYQLLGESGTYYGVRFGTNIP-WVTEF-PFG-YIKDP 116 (164)
Q Consensus 82 ~s~~~LG~~GTY~Gd~fGilm~-~VTgF-PFn-v~~~P 116 (164)
||-..||..--|+-. .+. .|||| ||. .-.||
T Consensus 8 ~~~~~~~~~~~~~~~----mk~VLvTGF~PF~g~~~NP 41 (228)
T 4hps_A 8 SSGVDLGTENLYFQS----MKTILVTAFDPFGGEAINP 41 (228)
T ss_dssp ----------CCSCC----CEEEEEEEECCCTTCSCCH
T ss_pred ccccccCcccccCCC----CCEEEEEeccCCCCCCCCh
Confidence 455667777776655 224 89998 775 34455
No 5
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*
Probab=5.79 E-value=1.9e+02 Score=26.16 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=13.9
Q ss_pred cccceeecccccccCC
Q 031183 88 GESGTYYGVRFGTNIP 103 (164)
Q Consensus 88 G~~GTY~Gd~fGilm~ 103 (164)
|+.-.|+|||+|...+
T Consensus 480 G~P~IY~G~EiG~~~~ 495 (628)
T 1g5a_A 480 GLPLIYLGDEVGTLND 495 (628)
T ss_dssp SEEEEETTGGGTCCCC
T ss_pred CCcEEEecccccCCCC
Confidence 7777899999999875
No 6
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=5.60 E-value=1.5e+02 Score=24.33 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=10.3
Q ss_pred CchhHHHHhcCCCCc
Q 031183 22 QPQTWVNLCGKGKDP 36 (164)
Q Consensus 22 ~p~~w~~~~g~~~~~ 36 (164)
+|..|.+...++..|
T Consensus 87 ~~~~w~~wv~~g~~~ 101 (260)
T 3pct_A 87 SPKTWTKWVDARQSA 101 (260)
T ss_dssp CHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHcCCCC
Confidence 467788887766653
No 7
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=5.55 E-value=2e+02 Score=22.71 Aligned_cols=13 Identities=54% Similarity=0.958 Sum_probs=7.4
Q ss_pred ceeec-cCc-cCCCC
Q 031183 104 WVTEF-PFG-YIKDP 116 (164)
Q Consensus 104 ~VTgF-PFn-v~~~P 116 (164)
.|||| ||. .-.||
T Consensus 4 LvTGF~PF~~~~~NP 18 (206)
T 1iu8_A 4 LLTGFEPFGGDDKNP 18 (206)
T ss_dssp EEEEECCCTTCSCCH
T ss_pred EEEeecCCCCCCCCc
Confidence 56666 555 44455
No 8
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=5.43 E-value=1.6e+02 Score=24.23 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=9.8
Q ss_pred eccCccCCCCchh
Q 031183 107 EFPFGYIKDPQYV 119 (164)
Q Consensus 107 gFPFnv~~~PmY~ 119 (164)
|.=|=+++||||=
T Consensus 210 G~~~ivlPNp~YG 222 (262)
T 3ocu_A 210 GKTFIMLPNANYG 222 (262)
T ss_dssp TTTEEECCCSSCS
T ss_pred CCCEEEeCCCCcc
Confidence 4446689999993
No 9
>3ix3_A Transcriptional activator protein LASR; quorum sensing receptor, triphenyl mimics, DNA- binding, quorum sensing; HET: OHN; 1.40A {Pseudomonas aeruginosa} PDB: 3ix4_A* 3ix8_A* 3jpu_A* 2uv0_E*
Probab=5.25 E-value=2.4e+02 Score=20.26 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=14.9
Q ss_pred HhhCchhHHHHhcCCC----Cchh
Q 031183 19 LWTQPQTWVNLCGKGK----DPSK 38 (164)
Q Consensus 19 l~t~p~~w~~~~g~~~----~~~~ 38 (164)
+=++|+.|.+..-+++ ||.+
T Consensus 53 ~~nyP~~W~~~Y~~~~y~~~DPvv 76 (173)
T 3ix3_A 53 VGNYPAAWREHYDRAGYARVDPTV 76 (173)
T ss_dssp EECSCHHHHHHHHHTTGGGTCHHH
T ss_pred ecCCCHHHHHHHHHCcCeecCchh
Confidence 3478999999987655 6554
No 10
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=4.94 E-value=2.5e+02 Score=19.90 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=17.2
Q ss_pred hhccCCCCCCcccccchhccccchhhHHHHHhcccceeecccccccCC-ceeeccCccCCCCchhHHHH
Q 031183 56 YSVSSLSWPPPFYFYPLFGFGQFLNFRVYQLLGESGTYYGVRFGTNIP-WVTEFPFGYIKDPQYVGSIL 123 (164)
Q Consensus 56 ~~v~~~~~p~~~~g~~l~~~G~~L~~~s~~~LG~~GTY~Gd~fGilm~-~VTgFPFnv~~~PmY~Gstl 123 (164)
.+++.+.|. +-.+++++++=.+-.....+.....+. |-.+| +..++ |+-++.|-..+++-
T Consensus 4 ~t~~t~~Ws-p~v~iIMI~cN~lai~igk~~I~~~~~------Gp~lP~~~~~~-f~g~~~~~lLat~S 64 (83)
T 1jb0_K 4 ATLPDTTWT-PSVGLVVILCNLFAIALGRYAIQSRGK------GPGLPIALPAL-FEGFGLPELLATTS 64 (83)
T ss_dssp -----------------CHHHHHHHHHHHC-CCCSSC------CSCC------------CCTTGGGHHH
T ss_pred eecCCCCCC-CccceeehhHHHHHHHHHHHHHcCCCC------CCCCCccchhc-cCCCCHHHHHHHhh
Confidence 455677885 445555554433322223333344433 55566 55666 78899998888763
Done!