BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031185
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
G L+V V++ L+ DF SDP+ +L+LGN +T + LNP WN+ + + +
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 72
Query: 65 GVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
VL + VFD+D K D +GK + L I
Sbjct: 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 4 PFGQLKVTVVQGKRLVIRDF-KSSDPYVVLKLGNQMAKTKVINSC-LNPVWNEEHSLSLT 61
P G L+V +V K L DF + DPYV L Q K+ V P WNE +++
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 62 EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94
E L ++FDKD DD +G+A + L+P+
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVF 100
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMA--KTKVINSCLNPVWNEEHSLS 59
L+V VV G L +D F +SDPYV L L ++A +TK I LNP WNEE
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 60 LTEPVGVLSLEVFDKDRFKADDKMGK 85
+ L EVFD++R DD +G+
Sbjct: 83 VNPSNHRLLFEVFDENRLTRDDFLGQ 108
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 7 QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
+L VTV K L+ D SDPYV LKL KTK I S LNP WNE + L
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 61 --TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIIS--AARLRHLVHVSSGE 109
++ LS+E++D DR +D MG + ++ A+ L++ GE
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 129
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 7 QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
+L VTV K L+ D SDPYV LKL KTK I S LNP WNE + L
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 61 --TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIIS--AARLRHLVHVSSGE 109
++ LS+E++D DR +D MG + ++ A+ L++ GE
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQEEGE 130
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM------AKTKVINSCLNPVWNEEHSLSL 60
++V V+ G L +D +SDPYV + L + M +TK I LNP WNEE +
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 61 TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
L EVFD++R DD +G+ + L P+
Sbjct: 82 HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMA------KTKVINSCLNPVWNEEHSLSL 60
++V V+ G L +D +SDPYV + L + M+ +TK I LNP WNEE +
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 61 TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
+ EVFD++R DD +G+ + L P+
Sbjct: 70 LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 7 QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
++ VTV + + L+ D SDPYV LKL KT+ + + LNPVWNE +L
Sbjct: 21 EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 61 TEPVGV---LSLEVFDKDRFKADDKMGKAYLNLQPIISA 96
+P V LS+EV+D DR +D MG + ++ A
Sbjct: 81 -KPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELLKA 118
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 7 QLKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSL 60
+L VTV K L+ D SDPYV LKL KTK I S LNP WNE + L
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 61 --TEPVGVLSLEVFDKDRFKADDKMG 84
++ LS+E++D DR +D G
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXG 104
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 6 GQLKVTVVQGKRL-VIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
G+L V V++ L + S+PY + +G+Q T+ I LNP WN + +
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY 446
Query: 65 -GVLSLEVFDKDRFKADDKMGKA 86
VL L +FD+D+F DD +G+
Sbjct: 447 QDVLCLTLFDRDQFSPDDFLGRT 469
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
++ +TVV + L +D SSDPYV +++G +TK I LNPVW E
Sbjct: 17 AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS 76
Query: 65 GVLSLEVFDKD---------RFK--ADDKMGKAYLNLQPI 93
+ + V D+D RFK +DD +G+ + ++ +
Sbjct: 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 8 LKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLT 61
L V V K LV D SDPYV LKL KTK I S LNP WNE L
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 62 EPVG--VLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97
E LS+E++D D +D MG + + A
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 271
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 19/105 (18%)
Query: 5 FGQLKVTVVQGKRLVIRDFKS-SDPYV----------VLKLGNQMA----KTKVINSCLN 49
G L + ++Q + LV RD SDP+V V+ + N A +TK + LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 50 PVWNEE---HSLSLTEPVG-VLSLEVFDKDRFKADDKMGKAYLNL 90
P WN+ S+S+ + + L + V+D DRF ++D +G+ ++L
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 8 LKVTVVQGKRLVIRDFKS-SDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLT 61
L V V K LV D SDPYV LKL KTK I LNP WNE L
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 62 EPVG--VLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97
E LS+E++D D +D MG + + A
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7 QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
QL V ++Q L D +SDPYV V L ++ K TKV LNPV+NE+ + +
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79
Query: 61 TEPVG-VLSLEVFDKDRFKADDKMGK 85
+E G L + V+D DRF D +G+
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGE 105
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQ-----MAKTKVINSCLNPVWNEEHSLS 59
G+L V +++ K L D SDPYV + L KT + + LNP +NE S
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 60 L----TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
+ + V V+ + V D D+ +D +GK ++ + A LRH
Sbjct: 210 VPFEQIQKVQVV-VTVLDYDKIGKNDAIGKVFVGYNS--TGAELRH 252
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7 QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
QL V ++Q L D +SDPYV V L ++ K TKV LNPV+NE+ + +
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102
Query: 61 TEPVG-VLSLEVFDKDRFKADDKMGK 85
+E G L + V+D DRF D +G+
Sbjct: 103 SELGGKTLVMAVYDFDRFSKHDIIGE 128
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7 QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
QL V ++Q L D +SDPYV V L ++ K TKV LNPV+NE+ + +
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 61 TEPVG-VLSLEVFDKDRFKADDKMGK 85
+E G L + V+D DRF D +G+
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGE 120
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7 QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
QL V ++Q L D +SDPYV V L ++ K TKV LNPV+NE+ + +
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 61 TEPVG-VLSLEVFDKDRFKADDKMGK 85
+E G L + V+D DRF D +G+
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGE 120
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 7 QLKVTVVQGKRLVIRDFK-SSDPYV-VLKLGNQMAK--TKVINSCLNPVWNEEHSLSL-- 60
QL V ++Q L D +SDPYV V L ++ K TKV LNPV+NE+ + +
Sbjct: 18 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 77
Query: 61 TEPVG-VLSLEVFDKDRFKADDKMGK 85
+E G L + V+D DRF D +G+
Sbjct: 78 SELGGKTLVMAVYDFDRFSKHDIIGE 103
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 1 MRQPFG--QLKVTVVQGKRLVIRDFKS-SDPYVVLKL---GNQMAKTKVINSCLNPVWNE 54
+R +G QL V ++Q L +D SDPYV + L + +TKV LNP++NE
Sbjct: 13 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 55 EHSLSLTEPVGVLS-----LEVFDKDRFKADDKMGKAYLN 89
S+ P+ L+ V+D DRF D +G+ L+
Sbjct: 73 TFQFSV--PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 1 MRQPFG--QLKVTVVQGKRLVIRDFKS-SDPYVVLKL---GNQMAKTKVINSCLNPVWNE 54
+R +G QL V ++Q L +D SDPYV + L + +TKV LNP++NE
Sbjct: 14 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 73
Query: 55 EHSLSLTEPVGVLS-----LEVFDKDRFKADDKMGKAYLN 89
S+ P+ L+ V+D DRF D +G+ L+
Sbjct: 74 TFQFSV--PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 111
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 8 LKVTVVQGKRLVIRDFK-SSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLS--LT 61
L V +++ + L +DF +SDP+V + L +TKV LNP WNE
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 62 EPV--GVLSLEVFDKDRFKADDKMGKAYLNLQPI 93
E V +L L+V D DRF +D +G+ + L +
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 3 QPFGQLKVTVVQGKRLVIRDFKS-SDPYVVLKL------GNQMAKTKVINSCLNPVWNEE 55
Q L+ T+++ K L D +DPYV L L N++ +TK + + NPVWNE
Sbjct: 24 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL-RTKTLRNTRNPVWNET 82
Query: 56 ---HSLSLTE-PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
H ++ + L + V D+D+F ++ +G+ +L+ + + R
Sbjct: 83 LQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQR 129
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 3 QPFGQLKVTVVQGKRLVIRDFKS-SDPYVVLKL------GNQMAKTKVINSCLNPVWNEE 55
Q L+ T+++ K L D +DPYV L L N++ +TK + + NPVWNE
Sbjct: 26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL-RTKTLRNTRNPVWNET 84
Query: 56 ---HSLSLTE-PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAAR 98
H ++ + L + V D+D+F ++ +G+ +L+ + + R
Sbjct: 85 LQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQR 131
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 7 QLKVTVVQGK-RLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG 65
QL++TV+ K + +++ PYV + + Q KT+ N+ +P W + ++ +T PV
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVS 95
Query: 66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLR 100
L V+ K+D +G A L++ + + ++
Sbjct: 96 KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK 130
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 7 QLKVTVVQGKRLVIRDF-KSSDPY--VVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP 63
+L++TV+ K LV +DF + DP+ VV+ Q T + + L+P WN+ + L + +
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 64 VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97
V ++ V++ + K G +L ++S A
Sbjct: 64 DSV-TISVWNHKKIHK--KQGAGFLGCVRLLSNA 94
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQ-----MAKTKVINSCLNPVWNEEHSLS 59
G+L V +++ K L D SDPYV + L KT + + LNP +NE S
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 60 L----TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
+ + V V+ + V D D+ +D +GK ++ + A LRH
Sbjct: 85 VPFEQIQKVQVV-VTVLDYDKIGKNDAIGKVFVGYNS--TGAELRH 127
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQ-----MAKTKVINSCLNPVWNEEHSLS 59
G+L V +++ K L D SDPYV + L KT + + LNP +NE S
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 60 L----TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
+ + V V+ + V D D+ +D +GK ++ + A LRH
Sbjct: 78 VPFEQIQKVQVV-VTVLDYDKIGKNDAIGKVFVGYNS--TGAELRH 120
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQ-----MAKTKVINSCLNPVWNEEHSLS 59
G+L V +++ K L D SDPYV + L KT + + LNP +NE S
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 60 L----TEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
+ + V V+ + V D D+ +D +GK ++ + A LRH
Sbjct: 77 VPFEQIQKVQVV-VTVLDYDKIGKNDAIGKVFVGYNS--TGAELRH 119
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 5 FGQLKVTVVQGKRLVIRDF-KSSDPY--VVLKLGNQMAKTKVINSCLNPVWNEEHSLSLT 61
F ++++TV+ K L +DF + DP+ +V+ Q T + + L+P WN+ + L +
Sbjct: 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 62 EPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97
+ +++ V++ + K G +L ++S A
Sbjct: 64 K-TDSITISVWNHKKIHK--KQGAGFLGCVRLLSNA 96
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAK-----TKVINSCLNPVWNEEHSLS 59
G L V +++ L D SDP+V L L M K T++ LNP +NEE
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 60 LTE---PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
+ L + V+D D K++D +G L + RL+H
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA--KGERLKH 139
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKLGNQMAK-----TKVINSCLNPVWNEEHSLS 59
G L V +++ L D SDP+V L L M K T++ LNP +NEE
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 60 LTE---PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
+ L + V+D D K++D +G L + RL+H
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA--KGERLKH 117
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 10 VTVVQGKRLVIRDFK-SSDPYVVLKLGNQMAKTK--------VINSCLNPVWNEEHSLSL 60
V +++ + L D +SDPYV + L M K K LNP++NE + +
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWL---MYKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 61 -TEPV--GVLSLEVFDKDRFKADDKMGKAYLNLQ 91
TE + + + V DKD+ +D +GK YL+ +
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
Query: 6 GQLKVTVVQGKRLVIRDFKS-SDPYVVLKL----GNQMA-KTKVINSCLNPVWNEEHSLS 59
G L V +++ L D SDP+V L L G + KT++ LNP +NEE
Sbjct: 37 GGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 60 LTE---PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRH 101
+ L + V+D D K++D +G L + RL+H
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA--KGERLKH 139
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 25 SSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSLEVFDKDRFKA 79
+ DPYV L + + +T+ N+ +NPVWNE L +P VL + + D + +
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL-DPNQENVLEITLMDAN-YVM 98
Query: 80 DDKMGKA 86
D+ +G A
Sbjct: 99 DETLGTA 105
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 25 SSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSLEVFDKDRFKA 79
+ DPYV L + + +T+ N+ +NPVWNE L +P VL + + D + +
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL-DPNQENVLEITLMDAN-YVM 83
Query: 80 DDKMGKAYLNLQPI 93
D+ +G A + +
Sbjct: 84 DETLGTATFTVSSM 97
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 25 SSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLT-EPVGVLSLEVFDKDRFKAD 80
+ DPYV L + + +T+ N+ +NPVWNE L VL + + D + + D
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN-YVMD 99
Query: 81 DKMGKAYLNL 90
+ +G A +
Sbjct: 100 ETLGTATFTV 109
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 29.3 bits (64), Expect = 0.96, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 25 SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLS--LTEPVGVLSLEVFDKDRFKADDK 82
++D Y+ + G Q +T V+ + NP W ++ L G L ++V+D D DD
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL 472
Query: 83 MG 84
+G
Sbjct: 473 LG 474
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNE 54
G L+V V + F DP V + ++ KTK +++ LNPVWNE
Sbjct: 7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNE 55
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-----MAKTKVINSCLNPVWNEEHSLSLTE 62
L + +++GK L+ + + DPYV + L + KT+ + C +P ++E + E
Sbjct: 29 LLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88
>pdb|3IBM|A Chain A, Crystal Structure Of Cupin 2 Domain-Containing Protein
Hhal_0468 From Halorhodospira Halophila
pdb|3IBM|B Chain B, Crystal Structure Of Cupin 2 Domain-Containing Protein
Hhal_0468 From Halorhodospira Halophila
Length = 167
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 51 VWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLR 100
W++ H+ EP+G L + D+DR + D A + P + A R+R
Sbjct: 110 AWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMCADPAV-ARRIR 158
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 26.9 bits (58), Expect = 5.1, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV 64
F LK VV G+ L F + +KL +T+ + + W E S+ +P
Sbjct: 340 FSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPT 399
Query: 65 GVLSLEVFDKD 75
+E+ D+D
Sbjct: 400 PGYKIELMDRD 410
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 7 QLKVTVVQGKRLVIR-DFKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNE 54
QL VT++ K L R D + +PYV + +TK + L P WN+
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 75
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 7 QLKVTVVQGKRLVIR-DFKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNE 54
QL VT++ K L R D + +PYV + +TK + L P WN+
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQ 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,779,680
Number of Sequences: 62578
Number of extensions: 181101
Number of successful extensions: 485
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 48
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)