Query 031185
Match_columns 164
No_of_seqs 190 out of 1682
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 100.0 8.6E-34 1.9E-38 190.3 13.7 163 1-164 1-165 (168)
2 cd04038 C2_ArfGAP C2 domain pr 100.0 1E-29 2.2E-34 171.6 18.5 145 5-150 1-145 (145)
3 cd04016 C2_Tollip C2 domain pr 99.9 1.2E-25 2.6E-30 147.3 14.4 102 5-106 1-104 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 1.2E-24 2.7E-29 144.1 13.4 99 8-106 1-108 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.9 3.2E-24 7E-29 141.2 14.7 102 7-108 1-104 (121)
6 cd08375 C2_Intersectin C2 doma 99.9 1.8E-23 3.8E-28 140.1 15.2 122 3-158 12-135 (136)
7 cd08376 C2B_MCTP_PRT C2 domain 99.9 2.1E-23 4.6E-28 136.3 14.9 99 7-105 1-101 (116)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.7E-23 3.8E-28 137.9 13.6 101 7-107 1-111 (126)
9 cd08681 C2_fungal_Inn1p-like C 99.9 1.7E-23 3.6E-28 137.2 12.7 100 6-106 1-103 (118)
10 cd04022 C2A_MCTP_PRT_plant C2 99.9 2E-23 4.2E-28 138.5 12.8 100 7-106 1-107 (127)
11 cd08391 C2A_C2C_Synaptotagmin_ 99.9 2.7E-23 6E-28 136.6 13.2 113 6-158 1-121 (121)
12 cd08678 C2_C21orf25-like C2 do 99.9 6E-23 1.3E-27 136.0 14.6 121 8-162 1-123 (126)
13 cd04044 C2A_Tricalbin-like C2 99.9 3.4E-23 7.4E-28 136.7 13.1 95 5-99 1-99 (124)
14 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 8.3E-23 1.8E-27 134.3 14.0 99 8-106 2-103 (121)
15 cd04024 C2A_Synaptotagmin-like 99.9 1.5E-22 3.2E-27 134.4 13.9 90 6-95 1-94 (128)
16 cd04019 C2C_MCTP_PRT_plant C2 99.9 2.4E-22 5.2E-27 136.6 14.3 101 7-107 1-108 (150)
17 cd08377 C2C_MCTP_PRT C2 domain 99.9 4E-22 8.6E-27 130.8 14.7 99 6-106 1-100 (119)
18 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 3.4E-22 7.5E-27 133.5 13.8 91 7-97 1-99 (133)
19 cd08677 C2A_Synaptotagmin-13 C 99.9 9.8E-23 2.1E-27 131.9 10.4 99 3-103 11-116 (118)
20 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 5.9E-22 1.3E-26 130.7 14.1 101 7-107 1-103 (123)
21 cd08395 C2C_Munc13 C2 domain t 99.9 3.4E-22 7.3E-27 130.7 12.7 102 7-108 1-113 (120)
22 cd04036 C2_cPLA2 C2 domain pre 99.9 6.1E-22 1.3E-26 130.0 13.4 91 8-99 2-97 (119)
23 cd04046 C2_Calpain C2 domain p 99.9 1.4E-21 3.1E-26 129.4 14.9 90 4-94 1-91 (126)
24 cd08381 C2B_PI3K_class_II C2 d 99.9 5.5E-22 1.2E-26 130.6 11.6 101 5-105 12-121 (122)
25 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 1.8E-21 3.8E-26 128.1 13.8 88 8-95 2-91 (121)
26 cd04015 C2_plant_PLD C2 domain 99.9 1.9E-21 4.2E-26 133.3 14.2 103 4-107 5-139 (158)
27 cd04028 C2B_RIM1alpha C2 domai 99.9 1.4E-21 3E-26 131.7 12.4 103 5-107 28-138 (146)
28 cd08400 C2_Ras_p21A1 C2 domain 99.9 7E-21 1.5E-25 126.1 15.5 99 5-106 3-103 (126)
29 cd08378 C2B_MCTP_PRT_plant C2 99.9 1.5E-21 3.3E-26 128.3 11.8 85 8-96 2-87 (121)
30 cd04029 C2A_SLP-4_5 C2 domain 99.9 2E-21 4.4E-26 128.4 12.4 103 3-105 12-124 (125)
31 cd04014 C2_PKC_epsilon C2 doma 99.9 7.6E-21 1.7E-25 126.9 15.2 117 4-160 2-130 (132)
32 cd08394 C2A_Munc13 C2 domain f 99.9 2.7E-21 5.9E-26 126.3 12.3 99 5-107 1-101 (127)
33 cd08373 C2A_Ferlin C2 domain f 99.9 9E-21 1.9E-25 125.7 14.9 116 12-163 2-120 (127)
34 cd04039 C2_PSD C2 domain prese 99.9 3.6E-21 7.9E-26 124.0 11.9 92 6-97 1-99 (108)
35 cd08387 C2A_Synaptotagmin-8 C2 99.9 4.8E-21 1E-25 126.6 12.3 104 3-106 13-123 (124)
36 cd04027 C2B_Munc13 C2 domain s 99.9 8.9E-21 1.9E-25 125.8 13.4 99 6-106 1-111 (127)
37 cd08393 C2A_SLP-1_2 C2 domain 99.9 2.1E-21 4.5E-26 128.4 9.9 102 4-105 13-124 (125)
38 cd04050 C2B_Synaptotagmin-like 99.9 6.1E-21 1.3E-25 122.5 11.8 97 7-106 1-101 (105)
39 cd08385 C2A_Synaptotagmin-1-5- 99.9 7.8E-21 1.7E-25 125.5 12.5 103 4-106 14-123 (124)
40 cd04017 C2D_Ferlin C2 domain f 99.9 2.7E-20 5.9E-25 124.7 14.8 83 7-89 2-95 (135)
41 cd08688 C2_KIAA0528-like C2 do 99.9 6.1E-21 1.3E-25 123.5 10.8 98 8-105 1-107 (110)
42 cd08382 C2_Smurf-like C2 domai 99.9 3.8E-20 8.2E-25 122.1 13.8 97 8-105 2-103 (123)
43 cd04043 C2_Munc13_fungal C2 do 99.9 6.6E-20 1.4E-24 121.4 15.0 88 7-94 2-94 (126)
44 cd04031 C2A_RIM1alpha C2 domai 99.9 1.7E-20 3.7E-25 124.0 11.6 102 3-105 13-124 (125)
45 cd04049 C2_putative_Elicitor-r 99.9 2.2E-20 4.8E-25 123.4 12.0 103 6-108 1-109 (124)
46 cd04051 C2_SRC2_like C2 domain 99.8 1.2E-20 2.6E-25 124.8 10.3 92 7-98 1-100 (125)
47 cd04045 C2C_Tricalbin-like C2 99.8 6.4E-20 1.4E-24 120.4 13.6 100 6-106 1-102 (120)
48 cd04030 C2C_KIAA1228 C2 domain 99.8 2.9E-20 6.3E-25 123.2 12.0 102 4-105 14-126 (127)
49 cd04041 C2A_fungal C2 domain f 99.8 2E-20 4.3E-25 121.3 10.9 91 6-96 1-100 (111)
50 cd08388 C2A_Synaptotagmin-4-11 99.8 5E-20 1.1E-24 122.2 12.8 102 4-105 14-126 (128)
51 cd04010 C2B_RasA3 C2 domain se 99.8 1.7E-20 3.6E-25 127.0 10.5 101 7-108 1-123 (148)
52 cd08392 C2A_SLP-3 C2 domain fi 99.8 2.7E-20 5.9E-25 123.4 11.3 93 4-96 13-115 (128)
53 cd08680 C2_Kibra C2 domain fou 99.8 1.9E-20 4E-25 123.3 10.3 94 3-96 11-114 (124)
54 cd04018 C2C_Ferlin C2 domain t 99.8 3.3E-20 7.1E-25 125.9 11.8 91 7-97 1-108 (151)
55 cd08685 C2_RGS-like C2 domain 99.8 2.2E-20 4.7E-25 122.4 10.0 101 4-104 10-118 (119)
56 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 2.8E-20 6E-25 128.1 10.9 105 4-108 25-139 (162)
57 cd08386 C2A_Synaptotagmin-7 C2 99.8 5.6E-20 1.2E-24 121.5 12.0 103 4-106 14-124 (125)
58 cd08690 C2_Freud-1 C2 domain f 99.8 2.6E-19 5.6E-24 121.6 14.7 101 8-108 4-122 (155)
59 cd04032 C2_Perforin C2 domain 99.8 9.3E-20 2E-24 120.3 12.0 92 4-96 26-120 (127)
60 cd04011 C2B_Ferlin C2 domain s 99.8 1.8E-19 3.9E-24 116.8 12.7 90 6-98 4-98 (111)
61 cd04052 C2B_Tricalbin-like C2 99.8 8.6E-20 1.9E-24 118.3 11.1 100 23-161 10-111 (111)
62 cd08389 C2A_Synaptotagmin-14_1 99.8 9.8E-20 2.1E-24 120.2 11.0 103 3-106 13-123 (124)
63 cd08390 C2A_Synaptotagmin-15-1 99.8 2.2E-19 4.8E-24 118.3 12.7 104 3-106 11-122 (123)
64 cd08521 C2A_SLP C2 domain firs 99.8 1.7E-19 3.6E-24 118.9 11.8 103 3-105 11-123 (123)
65 cd04040 C2D_Tricalbin-like C2 99.8 3.7E-19 8E-24 116.0 12.5 100 8-107 1-103 (115)
66 cd08676 C2A_Munc13-like C2 dom 99.8 2.7E-19 5.9E-24 121.6 11.4 99 2-105 24-153 (153)
67 cd04013 C2_SynGAP_like C2 doma 99.8 1.4E-18 3.1E-23 116.9 14.5 101 4-108 9-114 (146)
68 cd04021 C2_E3_ubiquitin_ligase 99.8 1.9E-18 4.2E-23 114.2 14.4 90 6-97 2-93 (125)
69 cd08675 C2B_RasGAP C2 domain s 99.8 5.9E-19 1.3E-23 118.4 10.9 101 8-108 1-121 (137)
70 cd04009 C2B_Munc13-like C2 dom 99.8 6.7E-19 1.5E-23 117.6 10.8 93 4-96 14-119 (133)
71 cd08383 C2A_RasGAP C2 domain ( 99.8 2.8E-18 6.1E-23 112.0 13.0 95 8-107 2-100 (117)
72 cd08691 C2_NEDL1-like C2 domai 99.8 4.6E-18 1E-22 113.7 14.1 89 7-97 2-108 (137)
73 cd08384 C2B_Rabphilin_Doc2 C2 99.8 3.1E-19 6.7E-24 119.2 8.2 101 3-105 10-119 (133)
74 cd04037 C2E_Ferlin C2 domain f 99.8 2E-18 4.3E-23 114.0 11.9 89 7-95 1-93 (124)
75 cd04048 C2A_Copine C2 domain f 99.8 1.8E-18 3.8E-23 113.6 11.0 97 12-108 6-115 (120)
76 cd08404 C2B_Synaptotagmin-4 C2 99.8 9E-19 2E-23 117.4 9.1 101 4-106 13-122 (136)
77 cd08406 C2B_Synaptotagmin-12 C 99.8 1.2E-18 2.5E-23 116.6 9.2 99 4-104 13-120 (136)
78 PLN03200 cellulose synthase-in 99.8 7.3E-19 1.6E-23 154.3 10.4 104 1-106 1975-2081(2102)
79 cd04026 C2_PKC_alpha_gamma C2 99.8 2.9E-18 6.4E-23 114.2 11.1 100 6-106 13-120 (131)
80 KOG1028 Ca2+-dependent phospho 99.8 3.4E-18 7.3E-23 133.3 12.4 103 4-106 165-274 (421)
81 cd08692 C2B_Tac2-N C2 domain s 99.8 3.1E-18 6.7E-23 113.4 10.2 102 3-105 11-121 (135)
82 cd08407 C2B_Synaptotagmin-13 C 99.8 1.3E-18 2.9E-23 116.4 8.4 100 4-105 13-123 (138)
83 cd00276 C2B_Synaptotagmin C2 d 99.8 1.6E-18 3.6E-23 115.7 8.4 103 4-108 12-123 (134)
84 PLN03008 Phospholipase D delta 99.8 6.4E-18 1.4E-22 138.0 13.2 125 4-162 12-180 (868)
85 cd04035 C2A_Rabphilin_Doc2 C2 99.8 1.3E-17 2.8E-22 109.9 12.3 100 3-103 12-121 (123)
86 cd08402 C2B_Synaptotagmin-1 C2 99.8 4.2E-18 9.1E-23 114.2 10.0 101 3-105 12-121 (136)
87 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.3E-18 2.7E-23 116.7 7.0 102 3-106 12-122 (136)
88 cd08408 C2B_Synaptotagmin-14_1 99.8 8.6E-18 1.9E-22 112.8 9.9 102 3-105 12-123 (138)
89 KOG0696 Serine/threonine prote 99.8 3.3E-19 7.2E-24 135.5 3.1 93 5-97 179-279 (683)
90 cd08410 C2B_Synaptotagmin-17 C 99.8 1E-17 2.3E-22 112.1 9.8 89 3-91 11-108 (135)
91 cd00275 C2_PLC_like C2 domain 99.7 1.4E-16 3.1E-21 105.5 14.8 90 6-96 2-102 (128)
92 cd08409 C2B_Synaptotagmin-15 C 99.7 7.3E-18 1.6E-22 113.1 8.5 103 4-106 13-123 (137)
93 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.5E-17 3.2E-22 111.3 10.0 101 3-105 11-120 (134)
94 cd08686 C2_ABR C2 domain in th 99.7 7.7E-17 1.7E-21 104.1 10.5 80 8-92 1-92 (118)
95 cd04047 C2B_Copine C2 domain s 99.7 9.3E-17 2E-21 103.8 10.6 88 10-98 4-103 (110)
96 PF00168 C2: C2 domain; Inter 99.7 4.4E-16 9.4E-21 95.5 9.0 80 8-87 1-85 (85)
97 KOG2059 Ras GTPase-activating 99.6 6.8E-16 1.5E-20 122.9 7.7 99 6-105 5-105 (800)
98 cd08374 C2F_Ferlin C2 domain s 99.6 8.4E-15 1.8E-19 97.0 10.0 91 7-97 1-125 (133)
99 KOG1011 Neurotransmitter relea 99.6 1.7E-15 3.8E-20 120.2 7.0 100 5-106 294-405 (1283)
100 cd00030 C2 C2 domain. The C2 d 99.6 2.2E-14 4.7E-19 89.9 10.8 96 8-103 1-100 (102)
101 smart00239 C2 Protein kinase C 99.6 2.7E-14 5.8E-19 89.8 10.8 92 7-98 1-97 (101)
102 PLN02223 phosphoinositide phos 99.5 6.5E-13 1.4E-17 104.9 14.0 96 5-100 408-515 (537)
103 COG5038 Ca2+-dependent lipid-b 99.5 4.4E-13 9.5E-18 112.1 11.8 97 3-99 433-533 (1227)
104 COG5038 Ca2+-dependent lipid-b 99.5 4E-13 8.7E-18 112.3 9.8 107 2-108 1036-1145(1227)
105 KOG1028 Ca2+-dependent phospho 99.4 6.6E-13 1.4E-17 103.9 9.6 89 4-92 296-393 (421)
106 PLN02270 phospholipase D alpha 99.4 2.5E-12 5.4E-17 105.6 13.1 104 4-108 6-130 (808)
107 PLN02952 phosphoinositide phos 99.4 1.2E-11 2.6E-16 99.6 13.6 94 5-98 469-575 (599)
108 KOG0169 Phosphoinositide-speci 99.4 4.8E-12 1E-16 102.3 11.1 94 7-100 617-722 (746)
109 PLN02230 phosphoinositide phos 99.3 8.6E-12 1.9E-16 100.3 10.6 96 5-100 468-576 (598)
110 PLN02222 phosphoinositide phos 99.3 5.5E-11 1.2E-15 95.5 13.7 96 5-100 451-559 (581)
111 PLN02228 Phosphoinositide phos 99.3 9.2E-11 2E-15 94.0 13.6 95 6-100 431-539 (567)
112 cd08689 C2_fungal_Pkc1p C2 dom 99.3 2.2E-11 4.8E-16 76.5 8.0 86 8-98 1-91 (109)
113 KOG1031 Predicted Ca2+-depende 99.2 3.6E-11 7.8E-16 95.1 7.1 92 5-96 2-99 (1169)
114 KOG1264 Phospholipase C [Lipid 99.1 7.9E-10 1.7E-14 90.2 10.2 94 5-98 1064-1165(1267)
115 KOG1328 Synaptic vesicle prote 99.1 3.2E-11 6.9E-16 97.2 1.7 91 5-95 946-1049(1103)
116 PLN02352 phospholipase D epsil 98.9 2.9E-08 6.3E-13 81.8 11.7 97 4-108 8-113 (758)
117 KOG1328 Synaptic vesicle prote 98.9 3.8E-10 8.2E-15 91.1 0.0 101 5-106 113-282 (1103)
118 KOG0905 Phosphoinositide 3-kin 98.8 2.8E-09 6.1E-14 89.9 3.9 103 5-107 1523-1635(1639)
119 KOG1011 Neurotransmitter relea 98.8 1.9E-08 4.2E-13 80.8 8.4 103 6-108 1125-1238(1283)
120 KOG1326 Membrane-associated pr 98.8 3.9E-09 8.4E-14 87.7 3.6 89 4-92 611-703 (1105)
121 KOG2059 Ras GTPase-activating 98.8 6.9E-09 1.5E-13 83.6 4.7 100 8-107 133-253 (800)
122 KOG1013 Synaptic vesicle prote 98.4 5.1E-07 1.1E-11 67.3 5.0 85 4-88 231-324 (362)
123 KOG3837 Uncharacterized conser 98.4 4.1E-07 8.8E-12 69.7 3.9 102 7-108 368-488 (523)
124 PLN02964 phosphatidylserine de 98.3 1.2E-06 2.6E-11 71.8 6.2 91 2-98 50-142 (644)
125 cd08683 C2_C2cd3 C2 domain fou 98.1 1.1E-05 2.4E-10 52.7 6.0 91 8-98 1-135 (143)
126 cd08684 C2A_Tac2-N C2 domain f 98.0 9.4E-06 2E-10 49.5 4.1 85 10-96 3-95 (103)
127 KOG1326 Membrane-associated pr 98.0 1.2E-06 2.5E-11 73.5 0.0 101 7-108 207-318 (1105)
128 KOG1013 Synaptic vesicle prote 98.0 9.1E-07 2E-11 66.0 -0.6 94 5-98 92-195 (362)
129 KOG2060 Rab3 effector RIM1 and 98.0 3.7E-06 8E-11 63.8 2.1 103 4-106 267-378 (405)
130 KOG1327 Copine [Signal transdu 97.8 4E-05 8.6E-10 61.1 5.6 83 12-95 142-236 (529)
131 PF15627 CEP76-C2: CEP76 C2 do 97.7 0.0015 3.2E-08 44.5 11.3 96 4-99 7-121 (156)
132 cd08398 C2_PI3K_class_I_alpha 97.5 0.0051 1.1E-07 42.1 11.4 86 5-93 7-106 (158)
133 cd08693 C2_PI3K_class_I_beta_d 97.5 0.0039 8.5E-08 43.4 10.9 88 5-93 7-120 (173)
134 cd08380 C2_PI3K_like C2 domain 97.4 0.0043 9.3E-08 42.4 10.5 88 6-93 8-107 (156)
135 cd08397 C2_PI3K_class_III C2 d 97.4 0.0057 1.2E-07 42.0 10.4 70 24-93 28-107 (159)
136 KOG1265 Phospholipase C [Lipid 97.2 0.0026 5.7E-08 53.7 8.3 89 5-100 702-801 (1189)
137 PF10358 NT-C2: N-terminal C2 97.1 0.042 9.1E-07 36.7 13.4 89 5-96 6-107 (143)
138 cd04012 C2A_PI3K_class_II C2 d 97.0 0.017 3.6E-07 40.2 10.3 89 5-93 7-119 (171)
139 PF12416 DUF3668: Cep120 prote 97.0 0.006 1.3E-07 46.9 8.5 99 8-108 2-114 (340)
140 cd08399 C2_PI3K_class_I_gamma 96.8 0.056 1.2E-06 37.8 11.3 88 6-93 10-122 (178)
141 PF07162 B9-C2: Ciliary basal 96.8 0.093 2E-06 36.3 14.2 81 8-93 4-104 (168)
142 KOG1452 Predicted Rho GTPase-a 96.8 0.0027 5.8E-08 47.8 4.6 89 3-92 48-140 (442)
143 cd08687 C2_PKN-like C2 domain 96.6 0.045 9.9E-07 33.8 8.5 65 24-93 7-72 (98)
144 PF00792 PI3K_C2: Phosphoinosi 96.2 0.084 1.8E-06 35.4 9.0 54 40-93 23-85 (142)
145 KOG1327 Copine [Signal transdu 95.9 0.024 5.1E-07 45.8 5.9 61 39-99 43-108 (529)
146 PF15625 CC2D2AN-C2: CC2D2A N- 95.6 0.45 9.8E-06 32.9 13.8 71 25-96 36-109 (168)
147 cd08695 C2_Dock-B C2 domains f 95.4 0.54 1.2E-05 33.2 10.5 54 38-91 54-112 (189)
148 smart00142 PI3K_C2 Phosphoinos 95.3 0.3 6.6E-06 30.7 8.3 68 8-75 13-91 (100)
149 cd08694 C2_Dock-A C2 domains f 94.7 0.53 1.1E-05 33.4 8.8 54 38-91 54-114 (196)
150 PF14429 DOCK-C2: C2 domain in 94.4 0.27 5.8E-06 34.5 7.1 89 4-92 5-120 (184)
151 PF11618 DUF3250: Protein of u 94.4 0.4 8.6E-06 30.7 7.0 67 29-97 2-77 (107)
152 cd08679 C2_DOCK180_related C2 92.3 2.8 6E-05 29.2 9.3 53 39-92 55-115 (178)
153 cd08696 C2_Dock-C C2 domains f 90.4 2.2 4.8E-05 29.9 7.1 55 38-92 55-118 (179)
154 cd08697 C2_Dock-D C2 domains f 89.6 3.2 6.9E-05 29.3 7.4 55 38-92 57-123 (185)
155 PTZ00447 apical membrane antig 87.1 12 0.00026 29.2 9.5 80 8-92 60-141 (508)
156 KOG0694 Serine/threonine prote 75.6 0.78 1.7E-05 38.4 -0.3 69 25-94 27-96 (694)
157 KOG4028 Uncharacterized conser 73.5 17 0.00038 24.1 5.5 25 66-90 75-99 (175)
158 KOG0904 Phosphatidylinositol 3 71.9 31 0.00066 30.5 7.9 67 6-74 343-421 (1076)
159 KOG1329 Phospholipase D1 [Lipi 67.7 4.5 9.9E-05 35.1 2.4 81 26-106 138-220 (887)
160 KOG3543 Ca2+-dependent activat 62.0 44 0.00094 28.5 6.8 81 8-90 343-426 (1218)
161 KOG4269 Rac GTPase-activating 57.3 6 0.00013 34.5 1.3 85 4-93 757-856 (1112)
162 PF06219 DUF1005: Protein of u 52.7 1.2E+02 0.0027 24.4 9.1 68 25-92 35-128 (460)
163 KOG0906 Phosphatidylinositol 3 52.3 13 0.00029 31.4 2.5 53 40-92 67-123 (843)
164 KOG2419 Phosphatidylserine dec 51.6 1.2 2.7E-05 37.1 -3.3 50 10-60 284-338 (975)
165 PF14909 SPATA6: Spermatogenes 51.3 73 0.0016 21.4 9.4 72 24-96 18-102 (140)
166 PF10409 PTEN_C2: C2 domain of 51.2 66 0.0014 20.9 9.7 87 7-94 5-98 (134)
167 PF12416 DUF3668: Cep120 prote 50.6 1.1E+02 0.0024 23.9 7.2 86 7-97 193-297 (340)
168 PF01060 DUF290: Transthyretin 50.2 35 0.00077 20.2 3.6 26 65-90 12-37 (80)
169 KOG4027 Uncharacterized conser 39.0 1.3E+02 0.0028 20.8 5.3 27 66-92 84-110 (187)
170 PF14924 DUF4497: Protein of u 36.3 1.1E+02 0.0025 19.4 5.9 31 66-96 30-63 (112)
171 PF10622 Ehbp: Energy-converti 31.4 37 0.0008 20.0 1.5 27 66-92 34-60 (78)
172 PF08872 KGK: KGK domain; Int 22.5 77 0.0017 20.5 2.0 14 148-161 80-95 (114)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=100.00 E-value=8.6e-34 Score=190.27 Aligned_cols=163 Identities=43% Similarity=0.718 Sum_probs=151.1
Q ss_pred CCCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCC
Q 031185 1 MRQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA 79 (164)
Q Consensus 1 ~~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~ 79 (164)
|..+.|.|+|.|.+|.+|..+| .+++||||++.+++++.+|+++.++.||.|||.|.|.+..+...|++.|||+|.++.
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence 5678999999999999999999 599999999999999999999999999999999999999998899999999999999
Q ss_pred CCeeEEEEEeCcccccceeeeEEE-EecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEE
Q 031185 80 DDKMGKAYLNLQPIISAARLRHLV-HVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI 158 (164)
Q Consensus 80 d~~lG~~~i~l~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~ 158 (164)
|||+|.++|++..+........+. .+.. ......+.++.++++..++.+.+..|++.++.++++++.++|+++..++|
T Consensus 81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~-gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~ 159 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQKMDYLKLELLT-GTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEW 159 (168)
T ss_pred ccccceeeeccHHHHHHhhhhccccccCC-CcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeE
Confidence 999999999999999987776521 3333 47788899999999999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 031185 159 VDAPSR 164 (164)
Q Consensus 159 ~~~~~~ 164 (164)
++.|++
T Consensus 160 ~~~~~~ 165 (168)
T KOG1030|consen 160 IKLPGS 165 (168)
T ss_pred ecCccc
Confidence 999874
No 2
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.97 E-value=1e-29 Score=171.59 Aligned_cols=145 Identities=55% Similarity=0.913 Sum_probs=131.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG 84 (164)
.|.|.|+|++|++|+..+.+.+||||+++++++..+|++++++.||.|+|+|.|.+..+...|.++|||++.+++|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 48899999999999887767899999999999999999999999999999999999888779999999999999999999
Q ss_pred EEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeee
Q 031185 85 KAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESG 150 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G 150 (164)
++.+++.++......... .-..+++.+..+.|+.+++++++|.+++.+||+.++++++|+++++|
T Consensus 81 ~a~i~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 81 EAEIDLEPLVEAAKLDHL-RDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEEHHHhhhhhhhhcc-ccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 999999999887666522 22344588999999999999999999999999999999999999987
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.94 E-value=1.2e-25 Score=147.29 Aligned_cols=102 Identities=25% Similarity=0.482 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 83 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l 83 (164)
.|.|.|+|++|++++..+.|.+||||++.+++++++|++..+ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 479999999999987666789999999999999999999876 7999999999999987666899999999999999999
Q ss_pred EEEEEeCc-ccccceeeeEEEEec
Q 031185 84 GKAYLNLQ-PIISAARLRHLVHVS 106 (164)
Q Consensus 84 G~~~i~l~-~l~~~~~~~~~~~l~ 106 (164)
|.+.+++. .+..+...+.|++|.
T Consensus 81 G~~~i~l~~~~~~g~~~~~W~~L~ 104 (121)
T cd04016 81 AWTHITIPESVFNGETLDDWYSLS 104 (121)
T ss_pred EEEEEECchhccCCCCccccEeCc
Confidence 99999996 455554455555554
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.93 E-value=1.2e-24 Score=144.13 Aligned_cols=99 Identities=26% Similarity=0.460 Sum_probs=86.9
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC------CCceEEEEEEEcCCCCCC
Q 031185 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE------PVGVLSLEVFDKDRFKAD 80 (164)
Q Consensus 8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~------~~~~L~v~v~d~~~~~~d 80 (164)
|+|+|++|+||+..+ .+.+||||++.+++.+++|++++++.||.|||+|.|.+.. ....|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999988 8899999999999999999999999999999999999876 245899999999999889
Q ss_pred CeeEEEEEeCcccc--cceeeeEEEEec
Q 031185 81 DKMGKAYLNLQPII--SAARLRHLVHVS 106 (164)
Q Consensus 81 ~~lG~~~i~l~~l~--~~~~~~~~~~l~ 106 (164)
++||++.+++.++. .+.....|++|.
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~ 108 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLE 108 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECc
Confidence 99999999999987 344445566654
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.93 E-value=3.2e-24 Score=141.16 Aligned_cols=102 Identities=34% Similarity=0.555 Sum_probs=91.7
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG 84 (164)
+|+|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||+|.|.+......|.++|||++..++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4899999999999988 88999999999977 568999999999999999999998876679999999999998999999
Q ss_pred EEEEeCcccccceeeeEEEEecCC
Q 031185 85 KAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
.+.+++.++..+...+.|++|...
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~ 104 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDP 104 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCC
Confidence 999999999888777777777543
No 6
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.92 E-value=1.8e-23 Score=140.09 Aligned_cols=122 Identities=33% Similarity=0.559 Sum_probs=103.1
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCC
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKAD 80 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d 80 (164)
...|.|.|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|||+|.|.+.... ..|.++|||++.+++|
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD 91 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence 46799999999999999988 889999999999999999999999999999999999997644 4899999999999899
Q ss_pred CeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEE
Q 031185 81 DKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKI 158 (164)
Q Consensus 81 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~ 158 (164)
++||++.+++.++....... .+ ....|+.++++..|+|++++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~------~~----------------------------~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKES------KG----------------------------PITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccC------CC----------------------------cEEEEeccccccceeEEEEEEe
Confidence 99999999999886632110 00 1234566778889999999875
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.92 E-value=2.1e-23 Score=136.26 Aligned_cols=99 Identities=33% Similarity=0.525 Sum_probs=86.9
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG 84 (164)
+|+|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|+|+|.|.+... ...|.++|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999998 88999999999999999999999999999999999998775 459999999999998999999
Q ss_pred EEEEeCcccccceeeeEEEEe
Q 031185 85 KAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~l 105 (164)
++.++++++..+...+.|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L 101 (116)
T cd08376 81 RCEIDLSALPREQTHSLELEL 101 (116)
T ss_pred EEEEeHHHCCCCCceEEEEEc
Confidence 999999987665544444333
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.91 E-value=1.7e-23 Score=137.88 Aligned_cols=101 Identities=28% Similarity=0.458 Sum_probs=91.1
Q ss_pred EEEEEEEEeec---CCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC----
Q 031185 7 QLKVTVVQGKR---LVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK---- 78 (164)
Q Consensus 7 ~L~v~i~~a~~---L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~---- 78 (164)
.|+|+|++|++ |+..+ .|.+||||.+++++++.+|++++++.||.|||+|.|.+......|.++|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 38999999999 78778 89999999999999999999999999999999999999876679999999999873
Q ss_pred --CCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185 79 --ADDKMGKAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 79 --~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
+|++||++.+++..+..+...+.|++|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 89999999999999988877777777753
No 9
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.91 E-value=1.7e-23 Score=137.17 Aligned_cols=100 Identities=30% Similarity=0.542 Sum_probs=86.1
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK 82 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~ 82 (164)
|.|.|+|++|++|+..+ .+.+||||++.+++...+|+++.+ +.||.|||.|.|.+.... ..|.++|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 68999999999999988 889999999999998899998755 789999999999998743 48999999999875 899
Q ss_pred eEEEEEeCcccccceeeeEEEEec
Q 031185 83 MGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 83 lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
||++.+++.++..+.....|+.|.
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~ 103 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELT 103 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEec
Confidence 999999999887665445555543
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=2e-23 Score=138.55 Aligned_cols=100 Identities=26% Similarity=0.420 Sum_probs=85.9
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcCCCC-CC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFK-AD 80 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~~~~-~d 80 (164)
.|.|+|++|++|+..+ .+.+||||++.++++.++|+++.++.||.|||.|.|.+.... ..|.++|||.+.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 4899999999999988 788999999999999999999999999999999999987532 37999999999886 79
Q ss_pred CeeEEEEEeCcccc-cceeeeEEEEec
Q 031185 81 DKMGKAYLNLQPII-SAARLRHLVHVS 106 (164)
Q Consensus 81 ~~lG~~~i~l~~l~-~~~~~~~~~~l~ 106 (164)
++||++.+++.++. .+.....|+.|.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~ 107 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLE 107 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEee
Confidence 99999999999887 344444555554
No 11
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.91 E-value=2.7e-23 Score=136.58 Aligned_cols=113 Identities=37% Similarity=0.640 Sum_probs=98.3
Q ss_pred eEEEEEEEEeecCCCCC-C------CCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCC
Q 031185 6 GQLKVTVVQGKRLVIRD-F------KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRF 77 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~------~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~ 77 (164)
|.|+|+|++|++|+..+ . +.+||||++++++..++|++++++.+|.|+|+|.|.+... ...|.++|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999876 2 5789999999999999999999999999999999998753 45999999999988
Q ss_pred CCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEE
Q 031185 78 KADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 157 (164)
Q Consensus 78 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~ 157 (164)
++++||.+.+++.++..+.. .+.|++|.+...|+|+++++
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~---------------------------------------~~~w~~L~~~~~G~~~~~~~ 120 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGF---------------------------------------IDEWLPLEDVKSGRLHLKLE 120 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCc---------------------------------------cceEEECcCCCCceEEEEEe
Confidence 89999999999998765422 24577877778899999999
Q ss_pred E
Q 031185 158 I 158 (164)
Q Consensus 158 ~ 158 (164)
|
T Consensus 121 ~ 121 (121)
T cd08391 121 W 121 (121)
T ss_pred C
Confidence 8
No 12
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.91 E-value=6e-23 Score=136.04 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=101.7
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC--CEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLG--NQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK 85 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~ 85 (164)
|.|+|++|++|+. ..+.+||||+++++ ...++|+++.++.||.|+|.|.|.+......|.++|||++..++|++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5799999999987 66789999999997 35689999999999999999999997666699999999999988999999
Q ss_pred EEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeCC
Q 031185 86 AYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162 (164)
Q Consensus 86 ~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~~ 162 (164)
+.+++.++........|+.|.... . ......|+|++++.|++.+
T Consensus 80 ~~i~l~~l~~~~~~~~~~~L~~~~--------------------------------~-~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 80 AIVPFDELRKNPSGRQIFPLQGRP--------------------------------Y-EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEeHHHhccCCceeEEEEecCCC--------------------------------C-CCCCcceEEEEEEEEeccc
Confidence 999999998877666676665330 0 0134589999999998764
No 13
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.91 E-value=3.4e-23 Score=136.69 Aligned_cols=95 Identities=31% Similarity=0.499 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC--EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCC
Q 031185 5 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN--QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKAD 80 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d 80 (164)
.|.|.|+|++|++|+..+ .+.+||||.+.+++ ..++|+++.++.+|.|||.|.|.+......|.++|||++..++|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 488999999999999765 46789999999977 77999999999999999999999886567999999999998899
Q ss_pred CeeEEEEEeCcccccceee
Q 031185 81 DKMGKAYLNLQPIISAARL 99 (164)
Q Consensus 81 ~~lG~~~i~l~~l~~~~~~ 99 (164)
++||.+.+++.++......
T Consensus 81 ~~iG~~~~~l~~l~~~~~~ 99 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQ 99 (124)
T ss_pred ceeEEEEEEHHHhccCccc
Confidence 9999999999998776543
No 14
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.91 E-value=8.3e-23 Score=134.33 Aligned_cols=99 Identities=21% Similarity=0.363 Sum_probs=86.3
Q ss_pred EEEEEEEeecCCCCC--CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185 8 LKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 8 L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG 84 (164)
|.|.|++|+||+..+ .+.+||||.+.+++. ..+|+++++|.+|.|||+|.|.+......|.+.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999874 578999999999765 58999999999999999999999876679999999999999999999
Q ss_pred EEEEeCcccccceeeeEEEEec
Q 031185 85 KAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
.+.++++++..+...+.|++|.
T Consensus 82 ~~~i~l~~l~~~~~~~~w~~L~ 103 (121)
T cd08401 82 KVAIKKEDLHKYYGKDTWFPLQ 103 (121)
T ss_pred EEEEEHHHccCCCCcEeeEEEE
Confidence 9999999887765555565554
No 15
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.90 E-value=1.5e-22 Score=134.41 Aligned_cols=90 Identities=37% Similarity=0.601 Sum_probs=82.1
Q ss_pred eEEEEEEEEeecCCCCC---CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC-CCceEEEEEEEcCCCCCCC
Q 031185 6 GQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDRFKADD 81 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~-~~~~L~v~v~d~~~~~~d~ 81 (164)
|.|.|+|++|++|+..+ .+.+||||.+.+++..++|++++++.+|.|+|+|.|.+.. ....|.++|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 68999999999998776 3689999999999999999999999999999999999986 3469999999999988899
Q ss_pred eeEEEEEeCccccc
Q 031185 82 KMGKAYLNLQPIIS 95 (164)
Q Consensus 82 ~lG~~~i~l~~l~~ 95 (164)
+||++.+++.++..
T Consensus 81 ~lG~~~i~l~~~~~ 94 (128)
T cd04024 81 YLGEFDIALEEVFA 94 (128)
T ss_pred cceEEEEEHHHhhc
Confidence 99999999999873
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=2.4e-22 Score=136.58 Aligned_cols=101 Identities=30% Similarity=0.420 Sum_probs=86.9
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCee
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKM 83 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~l 83 (164)
.|.|+|++|++|+..+ .|.+||||++.++++..+|++..+ +.||.|||.|.|.+..+. ..|.++|||++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 3889999999999999 889999999999999999999977 699999999999987643 4899999999988889999
Q ss_pred EEEEEeCcccccc----eeeeEEEEecC
Q 031185 84 GKAYLNLQPIISA----ARLRHLVHVSS 107 (164)
Q Consensus 84 G~~~i~l~~l~~~----~~~~~~~~l~~ 107 (164)
|++.++|+++..+ .....|++|..
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~ 108 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLER 108 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcC
Confidence 9999999998653 22355666653
No 17
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.90 E-value=4e-22 Score=130.75 Aligned_cols=99 Identities=31% Similarity=0.487 Sum_probs=86.9
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG 84 (164)
|.|.|+|++|++|+..+ .+.+||||++++++...+|++++++.||.|+|+|.|.+......|.++|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 68999999999999988 78899999999998889999999999999999999998775679999999999988999999
Q ss_pred EEEEeCcccccceeeeEEEEec
Q 031185 85 KAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
++.+++.++..+. ..|+.|.
T Consensus 81 ~~~~~l~~~~~~~--~~~~~l~ 100 (119)
T cd08377 81 KVAIPLLSIKNGE--RKWYALK 100 (119)
T ss_pred EEEEEHHHCCCCC--ceEEECc
Confidence 9999999875442 3354443
No 18
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.89 E-value=3.4e-22 Score=133.52 Aligned_cols=91 Identities=36% Similarity=0.587 Sum_probs=81.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK 78 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~ 78 (164)
.|+|+|++|++|+..+ .+.+||||++.+.+. ..+|++++++.+|.|||+|.|.+......|.++|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 3899999999999988 889999999999654 47899999999999999999999876668999999999998
Q ss_pred CCCeeEEEEEeCcccccce
Q 031185 79 ADDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~~ 97 (164)
++++||++.+++.++....
T Consensus 81 ~~~~iG~~~i~l~~l~~~~ 99 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTET 99 (133)
T ss_pred CCCeeEEEEEEHHHCCCcC
Confidence 9999999999999887653
No 19
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.89 E-value=9.8e-23 Score=131.88 Aligned_cols=99 Identities=22% Similarity=0.337 Sum_probs=84.4
Q ss_pred CcceEEEEEEEEeecCCCCCCCCCCcEEEEEECC----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcC
Q 031185 3 QPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD 75 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~ 75 (164)
...+.|+|+|++|++|+ .+ +.+||||++++.. .+++|++.++|.||.|||+|.|.+.... ..|.++|||+|
T Consensus 11 ~~~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 11 KQKAELHVNILEAENIS-VD-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred CcCCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 45689999999999998 33 5589999999953 4689999999999999999999987543 28999999999
Q ss_pred CCCCCCeeEEEEEeCcccccceeeeEEE
Q 031185 76 RFKADDKMGKAYLNLQPIISAARLRHLV 103 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 103 (164)
.++++++||++.++++++......++|.
T Consensus 89 rfs~~d~IG~v~l~l~~~~~~~~~~~W~ 116 (118)
T cd08677 89 RFSRHSTLGELRLKLADVSMMLGAAQWV 116 (118)
T ss_pred CCCCCceEEEEEEccccccCCccccchh
Confidence 9999999999999999886665555553
No 20
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.89 E-value=5.9e-22 Score=130.72 Aligned_cols=101 Identities=28% Similarity=0.436 Sum_probs=90.6
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCeeE
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~lG 84 (164)
+|+|+|++|++|+..+ .+.+||||.+++++...+|++++++.||.|+|+|.|.+.... ..|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999988 788999999999999999999999999999999999988753 48999999999998999999
Q ss_pred EEEEeCcccccceeeeEEEEecC
Q 031185 85 KAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
.+.+++.++........|+.|..
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~ 103 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLP 103 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCC
Confidence 99999999987766677777664
No 21
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.89 E-value=3.4e-22 Score=130.68 Aligned_cols=102 Identities=23% Similarity=0.211 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEEC-----C--EEEEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcC
Q 031185 7 QLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----N--QMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD 75 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-----~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~ 75 (164)
.|+|.|++|++|+..+.|.+||||++++. . ++++|+++.++.||.|||+|.|.+.... ..|.+.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 48999999999988777889999999982 2 3468999999999999999999997532 26899999999
Q ss_pred CCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 76 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
..+++++||++.+++.++..++....|++|...
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 888899999999999999999888888888644
No 22
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.89 E-value=6.1e-22 Score=129.95 Aligned_cols=91 Identities=31% Similarity=0.567 Sum_probs=79.9
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK 82 (164)
Q Consensus 8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~ 82 (164)
|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+.... ..|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999888 7899999999985 35689999999999999999999987653 3799999999998 8999
Q ss_pred eEEEEEeCcccccceee
Q 031185 83 MGKAYLNLQPIISAARL 99 (164)
Q Consensus 83 lG~~~i~l~~l~~~~~~ 99 (164)
||++.+++.++..+...
T Consensus 81 iG~~~~~l~~l~~g~~~ 97 (119)
T cd04036 81 LGTVLFDVSKLKLGEKV 97 (119)
T ss_pred cEEEEEEHHHCCCCCcE
Confidence 99999999987665433
No 23
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.89 E-value=1.4e-21 Score=129.40 Aligned_cols=90 Identities=22% Similarity=0.387 Sum_probs=82.4
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK 82 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~ 82 (164)
+..+|+|+|++|++|+..+ .+.+||||++.++++.++|++++++.+|.|||.|.|.+......|.++|||++.. .|++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence 4578999999999999888 8899999999999999999999999999999999999887767999999999987 5899
Q ss_pred eEEEEEeCcccc
Q 031185 83 MGKAYLNLQPII 94 (164)
Q Consensus 83 lG~~~i~l~~l~ 94 (164)
||.+.+++.++.
T Consensus 80 lG~~~~~l~~~~ 91 (126)
T cd04046 80 LGQATLSADPND 91 (126)
T ss_pred eEEEEEecccCC
Confidence 999999998754
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.88 E-value=5.5e-22 Score=130.62 Aligned_cols=101 Identities=26% Similarity=0.314 Sum_probs=87.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeC----CCceEEEEEEEcC
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVFDKD 75 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~----~~~~L~v~v~d~~ 75 (164)
.+.|.|.|++|++|+..+.+.+||||++++. ..+++|++++++.||.|||+|.|.+.. ....|.++|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 4789999999999998876689999999995 346899999999999999999999722 2348999999999
Q ss_pred CCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 76 RFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
.++++++||++.++|.++........|+.|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 998999999999999999877666667655
No 25
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.88 E-value=1.8e-21 Score=128.09 Aligned_cols=88 Identities=35% Similarity=0.593 Sum_probs=80.2
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 031185 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK 85 (164)
Q Consensus 8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~ 85 (164)
|.|+|++|++|+..+ .+.+||||++.+++.. .+|+++.++.||.|||.|.|.+......|.++|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 789999999999999 8899999999997754 79999999999999999999987766799999999999999999999
Q ss_pred EEEeCccccc
Q 031185 86 AYLNLQPIIS 95 (164)
Q Consensus 86 ~~i~l~~l~~ 95 (164)
+.++++.+..
T Consensus 82 ~~~~~~~~~~ 91 (121)
T cd04054 82 VSLTREVISA 91 (121)
T ss_pred EEEcHHHhcc
Confidence 9999887654
No 26
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.88 E-value=1.9e-21 Score=133.34 Aligned_cols=103 Identities=27% Similarity=0.462 Sum_probs=88.8
Q ss_pred cceEEEEEEEEeecCCCCC-------------------------------CCCCCcEEEEEECCEE-EEeeeeeCCCCCe
Q 031185 4 PFGQLKVTVVQGKRLVIRD-------------------------------FKSSDPYVVLKLGNQM-AKTKVINSCLNPV 51 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-------------------------------~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~ 51 (164)
..|.|.|+|.+|++|+.++ .|.+||||++++++.. .+|+++.++.||.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 4689999999999999865 3457999999998755 6999999999999
Q ss_pred EeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185 52 WNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 52 w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
|||+|.|.+......|.+.|||++.+ .+++||++.++++++..+...+.|++|..
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~ 139 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEPVEGWLPILD 139 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCCcceEEECcC
Confidence 99999999877667999999999988 46899999999999987776677777653
No 27
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=1.4e-21 Score=131.73 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=88.1
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEE-EcCC
Q 031185 5 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DKDR 76 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~-d~~~ 76 (164)
.+.|.|+|++|+||+..+ .+.+||||++++. + .+.+|++++++.||.|||+|.|.+......|.++|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 478999999999998864 6789999999993 2 368999999999999999999999855569999999 6788
Q ss_pred CCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185 77 FKADDKMGKAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
++++++||.+.|+|+.+..+.....|+.|..
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 8889999999999999876666666766653
No 28
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.88 E-value=7e-21 Score=126.06 Aligned_cols=99 Identities=22% Similarity=0.412 Sum_probs=83.8
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK 82 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~ 82 (164)
...|+|+|++|+||+.. +.+||||.+.+++.. .+|++. ++.||.|||+|.|.+..+. ..+.|.|||++.+++|++
T Consensus 3 ~~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eeEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 45799999999999875 468999999998754 688874 6899999999999866543 478999999999999999
Q ss_pred eEEEEEeCcccccceeeeEEEEec
Q 031185 83 MGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 83 lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
||.+.++|..+..+...+.|+.|.
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~ 103 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLS 103 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcc
Confidence 999999999988877666776665
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.5e-21 Score=128.31 Aligned_cols=85 Identities=35% Similarity=0.521 Sum_probs=77.2
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeEEE
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMGKA 86 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG~~ 86 (164)
|.|+|++|++|+.. .+||||++.+++...+|++++++.||.|||+|.|.+... ...|.++|||++.. ++++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 88999999999876 789999999999999999999999999999999998763 45899999999987 78999999
Q ss_pred EEeCcccccc
Q 031185 87 YLNLQPIISA 96 (164)
Q Consensus 87 ~i~l~~l~~~ 96 (164)
.++++++...
T Consensus 78 ~i~l~~l~~~ 87 (121)
T cd08378 78 CFDLSEVPTR 87 (121)
T ss_pred EEEhHhCcCC
Confidence 9999988653
No 30
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.87 E-value=2e-21 Score=128.44 Aligned_cols=103 Identities=26% Similarity=0.340 Sum_probs=89.0
Q ss_pred CcceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 72 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~ 72 (164)
...+.|.|+|++|+||+..+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.++||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 46788999999999999876 4789999999993 2357999999999999999999998653 348999999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
|++.++++++||++.+++..+......+.|++|
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 999999999999999999999887777777665
No 31
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.87 E-value=7.6e-21 Score=126.89 Aligned_cols=117 Identities=24% Similarity=0.429 Sum_probs=96.9
Q ss_pred cceEEEEEEEEeecCCCCC-C----------CCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEE
Q 031185 4 PFGQLKVTVVQGKRLVIRD-F----------KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEV 71 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~----------~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v 71 (164)
..|.|+|+|++|++|+..+ . +.+||||++.++++. .+|++..++.+|.|||+|.|.+.. ...|.+.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v 80 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV 80 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence 3588999999999998777 3 478999999998765 689999999999999999999974 46899999
Q ss_pred EEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeee
Q 031185 72 FDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGE 151 (164)
Q Consensus 72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~ 151 (164)
||++.++.+++||++.++|.++.... + -..+.|++|. +.|+
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~----------~---------------------------~~~~~w~~L~--~~G~ 121 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRG----------S---------------------------GSFDLWVDLE--PQGK 121 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccC----------C---------------------------CcccEEEEcc--CCcE
Confidence 99998888999999999999876520 0 0125677776 5699
Q ss_pred EEEEEEEEe
Q 031185 152 IELKVKIVD 160 (164)
Q Consensus 152 v~~~l~~~~ 160 (164)
|+++++|-.
T Consensus 122 l~l~~~~~~ 130 (132)
T cd04014 122 LHVKIELKG 130 (132)
T ss_pred EEEEEEEec
Confidence 999998854
No 32
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.87 E-value=2.7e-21 Score=126.34 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=85.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeE
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG 84 (164)
++.|.|+|++|++|+..+ ..||||++++++++.+|++.++ .||.|||.|.|.+......|.|+|||++.+ .|++||
T Consensus 1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG 76 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG 76 (127)
T ss_pred CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence 368999999999997654 4589999999999999999988 599999999999987766899999999977 899999
Q ss_pred EEEEeCcccccceee--eEEEEecC
Q 031185 85 KAYLNLQPIISAARL--RHLVHVSS 107 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~--~~~~~l~~ 107 (164)
++.++|.++...... ..||+|..
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecCh
Confidence 999999998876544 56666654
No 33
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.87 E-value=9e-21 Score=125.74 Aligned_cols=116 Identities=24% Similarity=0.269 Sum_probs=97.2
Q ss_pred EEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCCCCCCCeeEEEEE
Q 031185 12 VVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDRFKADDKMGKAYL 88 (164)
Q Consensus 12 i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~~~~d~~lG~~~i 88 (164)
|++|++|+. ..+.+||||++.+++..++|++++++.+|.|+|+|.|.+... ...|.++|||++..++|++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 678999988 567899999999999999999999999999999999998753 3589999999999989999999999
Q ss_pred eCcccccceeeeEEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeCCC
Q 031185 89 NLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAPS 163 (164)
Q Consensus 89 ~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~~~ 163 (164)
++.++..+.....|++|... . .....|+|++.++|.|+.+
T Consensus 81 ~l~~l~~~~~~~~~~~L~~~----------------------------------~-~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 81 SLQDLVSEGLLEVTEPLLDS----------------------------------N-GRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EhhHcccCCceEEEEeCcCC----------------------------------C-CCcccEEEEEEEEEeCCCC
Confidence 99998877666666666422 0 1123699999999999864
No 34
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.87 E-value=3.6e-21 Score=124.02 Aligned_cols=92 Identities=25% Similarity=0.404 Sum_probs=82.4
Q ss_pred eEEEEEEEEeecCCCCC-C----CCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCCCC
Q 031185 6 GQLKVTVVQGKRLVIRD-F----KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDRFK 78 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~----~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~~~ 78 (164)
|.|.|+|++|++|+..+ . +.+||||++.+++..++|++++++.||.|||.|.|.+.... ..|.++|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999876 2 34899999999999999999999999999999999986543 37999999999999
Q ss_pred CCCeeEEEEEeCcccccce
Q 031185 79 ADDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~~ 97 (164)
+|++||++.++|+++....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999987764
No 35
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.87 E-value=4.8e-21 Score=126.55 Aligned_cols=104 Identities=24% Similarity=0.424 Sum_probs=90.8
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcC
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKD 75 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~ 75 (164)
+..+.|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.+|.|+|+|.|.+... ...|.++|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 45689999999999999988 8889999999983 3458999999999999999999998754 248999999999
Q ss_pred CCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 76 RFKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
.++++++||++.++++++..+...+.|+.|.
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9989999999999999998777777776654
No 36
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.87 E-value=8.9e-21 Score=125.75 Aligned_cols=99 Identities=27% Similarity=0.546 Sum_probs=84.4
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC-------
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF------- 77 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~------- 77 (164)
..|+|+|++|++|+..+ .+.+||||++.+++..++|+++.++.+|.|+|.|.|.+......|.++|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 36899999999999988 8889999999999888999999999999999999999876656899999999852
Q ss_pred ----CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 78 ----KADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 78 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
+.+++||.+.+++.++.. ....|+.|.
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~ 111 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSG--EMDVWYNLE 111 (127)
T ss_pred eccccCCCcceEEEEEhHHccC--CCCeEEECc
Confidence 468999999999987642 234555554
No 37
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.86 E-value=2.1e-21 Score=128.42 Aligned_cols=102 Identities=27% Similarity=0.351 Sum_probs=87.0
Q ss_pred cceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185 4 PFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 73 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d 73 (164)
..+.|.|+|++|+||+..+ . +.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.++|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 4578999999999999988 5 789999999993 2347999999999999999999998643 2489999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
++.++++++||++.++|.++........|+.|
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999998666555566554
No 38
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.86 E-value=6.1e-21 Score=122.54 Aligned_cols=97 Identities=28% Similarity=0.432 Sum_probs=85.0
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG 84 (164)
.|.|+|++|++|+..+ .+.+||||+++++++.++|+++.++.+|.|||.|.|.+..+ ...|.++|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 4889999999999988 88999999999999999999999999999999999999875 3489999999886 78999
Q ss_pred EEEEeCcccccce--eeeEEEEec
Q 031185 85 KAYLNLQPIISAA--RLRHLVHVS 106 (164)
Q Consensus 85 ~~~i~l~~l~~~~--~~~~~~~l~ 106 (164)
++.++|.++.... ....||.|.
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecC
Confidence 9999999987654 345566654
No 39
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.86 E-value=7.8e-21 Score=125.52 Aligned_cols=103 Identities=29% Similarity=0.372 Sum_probs=90.0
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR 76 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~ 76 (164)
..+.|.|+|++|++|+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.++|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 4678999999999999988 7889999999984 2457999999999999999999998653 3489999999999
Q ss_pred CCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 77 FKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
++++++||++.+++.++..+...+.|++|.
T Consensus 94 ~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 989999999999999987777777777764
No 40
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.86 E-value=2.7e-20 Score=124.68 Aligned_cols=83 Identities=28% Similarity=0.481 Sum_probs=74.2
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC----------CceEEEEEEEcC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP----------VGVLSLEVFDKD 75 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~----------~~~L~v~v~d~~ 75 (164)
+|+|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|||.|.|.+... ...|.++|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999989 88999999999999999999999999999999999975321 136899999999
Q ss_pred CCCCCCeeEEEEEe
Q 031185 76 RFKADDKMGKAYLN 89 (164)
Q Consensus 76 ~~~~d~~lG~~~i~ 89 (164)
..++|++||++.+.
T Consensus 82 ~~~~d~~iG~~~i~ 95 (135)
T cd04017 82 SVGKDEFLGRSVAK 95 (135)
T ss_pred CCCCCccceEEEee
Confidence 99899999999873
No 41
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.86 E-value=6.1e-21 Score=123.51 Aligned_cols=98 Identities=32% Similarity=0.606 Sum_probs=84.9
Q ss_pred EEEEEEEeecCCCCC--CCCCCcEEEEEECCEEEEeeeeeCCCCCeE-eceEEEEeeCC---CceEEEEEEEcCCCCCCC
Q 031185 8 LKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQMAKTKVINSCLNPVW-NEEHSLSLTEP---VGVLSLEVFDKDRFKADD 81 (164)
Q Consensus 8 L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w-~e~~~f~~~~~---~~~L~v~v~d~~~~~~d~ 81 (164)
|.|+|++|++|+..+ .+.+||||++++++..++|++++++.+|.| +|+|.|.+... ...|.++|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 679999999999887 578999999999999999999999999999 99999998764 258999999999998999
Q ss_pred eeEEEEEeCcccccc---eeeeEEEEe
Q 031185 82 KMGKAYLNLQPIISA---ARLRHLVHV 105 (164)
Q Consensus 82 ~lG~~~i~l~~l~~~---~~~~~~~~l 105 (164)
+||++.+++.++... .....||+|
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l 107 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPI 107 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEc
Confidence 999999999998773 334445444
No 42
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.85 E-value=3.8e-20 Score=122.09 Aligned_cols=97 Identities=25% Similarity=0.535 Sum_probs=83.6
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEEC-CEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCC--CCee
Q 031185 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLG-NQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKA--DDKM 83 (164)
Q Consensus 8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~--d~~l 83 (164)
|+|+|++|++|+..+ .+.+||||+++++ ...++|++++++.||.|+|+|.|.+.. ...|.++|||++.+++ |++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 789999999999988 8899999999996 667999999999999999999999976 5699999999998865 5799
Q ss_pred EEEEEeCcccccceee-eEEEEe
Q 031185 84 GKAYLNLQPIISAARL-RHLVHV 105 (164)
Q Consensus 84 G~~~i~l~~l~~~~~~-~~~~~l 105 (164)
|++.+++.++...... ..|+.+
T Consensus 81 G~~~i~l~~l~~~~~~~~~~~~l 103 (123)
T cd08382 81 GCVRIRANAVLPLKDTGYQRLDL 103 (123)
T ss_pred eEEEEEHHHccccCCCccceeEe
Confidence 9999999998765432 345444
No 43
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.85 E-value=6.6e-20 Score=121.35 Aligned_cols=88 Identities=33% Similarity=0.472 Sum_probs=78.4
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADD 81 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~ 81 (164)
.|+|+|++|++|+..+ .+.+||||.+.+.+ ..++|++++++.+|.|||+|.|.+... ...|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999988 88999999999853 358999999999999999999999875 358999999999988899
Q ss_pred eeEEEEEeCcccc
Q 031185 82 KMGKAYLNLQPII 94 (164)
Q Consensus 82 ~lG~~~i~l~~l~ 94 (164)
+||++.++|.++.
T Consensus 82 ~iG~~~i~l~~~~ 94 (126)
T cd04043 82 LCGRASLKLDPKR 94 (126)
T ss_pred eEEEEEEecCHHH
Confidence 9999999998653
No 44
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=1.7e-20 Score=123.96 Aligned_cols=102 Identities=29% Similarity=0.393 Sum_probs=84.6
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeC----CCceEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTE----PVGVLSLEVF 72 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~----~~~~L~v~v~ 72 (164)
...+.|.|+|++|++|+..+ .+.+||||++++.+ ..++|++++++.+|.|||+|.|.+.. ....|.++||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 34688999999999999988 78899999999953 56899999999999999999998644 2348999999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
|++.++++++||++.++|.+.. ......||+|
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred eCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 9999988999999999999832 2233455554
No 45
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.85 E-value=2.2e-20 Score=123.36 Aligned_cols=103 Identities=30% Similarity=0.491 Sum_probs=92.5
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeC-CCCCeEeceEEEEeeCC----CceEEEEEEEcCCCCC
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINS-CLNPVWNEEHSLSLTEP----VGVLSLEVFDKDRFKA 79 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~----~~~L~v~v~d~~~~~~ 79 (164)
|.|.|+|++|++|+..+ .+.+||||++++++..++|++..+ +.+|.|||.|.|.+... ...|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 68999999999999888 889999999999988899998875 89999999999999876 3589999999999889
Q ss_pred CCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 80 DDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 80 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
+++||++.+++.++..++..+.|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999988877778777643
No 46
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.85 E-value=1.2e-20 Score=124.80 Aligned_cols=92 Identities=24% Similarity=0.380 Sum_probs=82.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeee-CCCCCeEeceEEEEeeCC-----CceEEEEEEEcCCCC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVIN-SCLNPVWNEEHSLSLTEP-----VGVLSLEVFDKDRFK 78 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~-~t~~P~w~e~~~f~~~~~-----~~~L~v~v~d~~~~~ 78 (164)
+|+|+|++|++|+..+ .+.+||||.+++++ ..++|++.. ++.+|.|||.|.|.+... ...|.++|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988 88999999999987 788999875 489999999999999876 459999999999988
Q ss_pred CCCeeEEEEEeCccccccee
Q 031185 79 ADDKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~~~ 98 (164)
.+++||++.+++.++..+..
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCcEEEEEEEHHHhhcccC
Confidence 89999999999999987754
No 47
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.85 E-value=6.4e-20 Score=120.42 Aligned_cols=100 Identities=25% Similarity=0.411 Sum_probs=88.1
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 83 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l 83 (164)
|.|.|+|++|++|+..+ .+.+||||++++++ ..++|+++.++.+|.|+|.|.|.+......|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 68999999999999988 88999999999976 45899999999999999999999887767999999999999899999
Q ss_pred EEEEEeCcccccceeeeEEEEec
Q 031185 84 GKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 84 G~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
|++.+++.++... ..+.||.+-
T Consensus 81 G~~~~~l~~l~~~-~~~~~~~~~ 102 (120)
T cd04045 81 GSVEINVSDLIKK-NEDGKYVEY 102 (120)
T ss_pred eEEEEeHHHhhCC-CCCceEEec
Confidence 9999999999887 444454443
No 48
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.85 E-value=2.9e-20 Score=123.21 Aligned_cols=102 Identities=25% Similarity=0.329 Sum_probs=88.4
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK 74 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~ 74 (164)
..+.|.|+|++|+||+..+ .+.+||||++.+. ...++|++++++.||.|||+|.|.+... ...|.+.|||.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 4588999999999999998 7899999999994 3568999999999999999999998643 24899999999
Q ss_pred CCC--CCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 75 DRF--KADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 75 ~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
+.+ +++++||++.+++.++..+.....|+.|
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 875 6899999999999998777666667665
No 49
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.85 E-value=2e-20 Score=121.29 Aligned_cols=91 Identities=36% Similarity=0.576 Sum_probs=81.0
Q ss_pred eEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEcCC
Q 031185 6 GQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKDR 76 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~~~ 76 (164)
|+|+|+|++|++|+..+ . +.+||||++++. ...++|++++++.||.|||.|.|.+... ...|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 68999999999999988 6 899999999984 3458999999999999999999987653 3489999999999
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 031185 77 FKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 77 ~~~d~~lG~~~i~l~~l~~~ 96 (164)
+++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 98999999999999998743
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.85 E-value=5e-20 Score=122.25 Aligned_cols=102 Identities=26% Similarity=0.334 Sum_probs=84.1
Q ss_pred cceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEE-eeCC---CceEEEEEEEc
Q 031185 4 PFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFDK 74 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~L~v~v~d~ 74 (164)
..+.|.|+|++|+||+..+ . +.+||||++.+. .+..+|++++++.||.|||+|.|. +... ...|.++|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 4578999999999999988 5 889999999984 345799999999999999999994 4322 23799999999
Q ss_pred CCCCCCCeeEEEEEeCcccccc--eeeeEEEEe
Q 031185 75 DRFKADDKMGKAYLNLQPIISA--ARLRHLVHV 105 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l 105 (164)
+.++++++||++.++|.++.-. .....|+++
T Consensus 94 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 94 DRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred CCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999999999999988544 445555544
No 51
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.84 E-value=1.7e-20 Score=127.04 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=86.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeC----------------CCc
Q 031185 7 QLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTE----------------PVG 65 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~----------------~~~ 65 (164)
.|.|+|++|++|+. ..|.+||||++.+.. ..++|++++++.||.|||+|.|.+.. ...
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 48999999999987 457899999999965 56899999999999999999999851 113
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEeCcccccc-eeeeEEEEecCC
Q 031185 66 VLSLEVFDKDRFKADDKMGKAYLNLQPIISA-ARLRHLVHVSSG 108 (164)
Q Consensus 66 ~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~ 108 (164)
.|.+.|||++.+++|+|||++.|++..+... .....||.|...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 7899999999988999999999999999887 566778888644
No 52
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.84 E-value=2.7e-20 Score=123.38 Aligned_cols=93 Identities=25% Similarity=0.293 Sum_probs=81.4
Q ss_pred cceEEEEEEEEeecCCCCC-C-CCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185 4 PFGQLKVTVVQGKRLVIRD-F-KSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 73 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d 73 (164)
..+.|.|+|++|+||+.++ . +.+||||++++. ..+++|++++++.||.|||+|.|.+... ...|.+.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 4578999999999999888 4 899999999993 2367999999999999999999998653 3489999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccc
Q 031185 74 KDRFKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~ 96 (164)
.+.++++++||++.|+|.++.-.
T Consensus 93 ~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 93 SRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred CCCCcCcceEEEEEEEcCCcccC
Confidence 99998999999999999988443
No 53
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.84 E-value=1.9e-20 Score=123.34 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=82.3
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC------CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG------NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 72 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~------~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~ 72 (164)
...+.|.|.|++|+||+..+ .+.+||||++++. ...++|++++++.||.|||+|.|++... ...|.++||
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 34678999999999999988 7889999999982 2368999999999999999999998753 249999999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccc
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~ 96 (164)
+.+.++++++||.+.++|.++...
T Consensus 91 ~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 91 SVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred eCCCCCceeEEEEEEEEhhhccCC
Confidence 999998999999999999988444
No 54
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=3.3e-20 Score=125.88 Aligned_cols=91 Identities=26% Similarity=0.429 Sum_probs=81.4
Q ss_pred EEEEEEEEeecCCCCC-CC--------------CCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC--CceEEE
Q 031185 7 QLKVTVVQGKRLVIRD-FK--------------SSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSL 69 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~--------------~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~--~~~L~v 69 (164)
.|.|+|++|++|+.++ .+ .+||||++.+++++.+|++++++.||.|||+|.|.+..+ ...|.+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999988 43 589999999999999999999999999999999997543 358999
Q ss_pred EEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185 70 EVFDKDRFKADDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 70 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 97 (164)
+|||++..++|++||++.+++.++....
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999887754
No 55
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.84 E-value=2.2e-20 Score=122.42 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=84.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCC
Q 031185 4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDR 76 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~ 76 (164)
..+.|.|+|++|+||+..+.+.+||||++++.. .+++|++++++.+|.|||+|.|.+.... ..|.++|||++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 357899999999999888777899999999943 3578999999999999999999986532 378899999988
Q ss_pred CC-CCCeeEEEEEeCcccccceeeeEEEE
Q 031185 77 FK-ADDKMGKAYLNLQPIISAARLRHLVH 104 (164)
Q Consensus 77 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~ 104 (164)
.. ++++||.+.+++.++..+.....||.
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccceEe
Confidence 75 47899999999999976655556654
No 56
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.84 E-value=2.8e-20 Score=128.07 Aligned_cols=105 Identities=28% Similarity=0.366 Sum_probs=90.8
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEE
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFD 73 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d 73 (164)
+.|.|.|+|++|+||+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 6689999999999999998 8899999999882 3568999999999999999999985422 2379999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
++.++++++||++.+++..+........|+.+.+.
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 99998899999999999999877777778777644
No 57
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=5.6e-20 Score=121.54 Aligned_cols=103 Identities=28% Similarity=0.392 Sum_probs=88.0
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE---CCEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEcC
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL---GNQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDKD 75 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~~ 75 (164)
..+.|.|+|++|++|+..+ .+.+||||++.+ +....+|++++++.+|.|||+|.|..... ...|.++|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 5678999999999999988 888999999998 34568999999999999999999975332 237999999999
Q ss_pred CCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 76 RFKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
.++++++||++.+++.++........|+.|.
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 94 RFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 9989999999999999988776666776653
No 58
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.84 E-value=2.6e-19 Score=121.61 Aligned_cols=101 Identities=27% Similarity=0.417 Sum_probs=82.2
Q ss_pred EEEEEEEeec--CCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeCCC---------ceEEEE
Q 031185 8 LKVTVVQGKR--LVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPV---------GVLSLE 70 (164)
Q Consensus 8 L~v~i~~a~~--L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---------~~L~v~ 70 (164)
..++|..|++ |+... .+..||||++++ ..++.+|+++++|.||.|||+|.|.+.... ..|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455666666 55655 678999999997 245799999999999999999999997552 379999
Q ss_pred EEEcCCC-CCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 71 VFDKDRF-KADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 71 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
|||++.+ ++|++||++.++|+.+........+++|..+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~ 122 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG 122 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC
Confidence 9999986 5799999999999999887776677777655
No 59
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.83 E-value=9.3e-20 Score=120.30 Aligned_cols=92 Identities=34% Similarity=0.472 Sum_probs=81.5
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC--CCceEEEEEEEcCCCCCC
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE--PVGVLSLEVFDKDRFKAD 80 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~--~~~~L~v~v~d~~~~~~d 80 (164)
..+.|+|+|++|++|+. + .+.+|||+++++++..++|++++++.||.|||+|.|.... ....|.|+|||++.+++|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 56899999999999974 5 7789999999999889999999999999999999997533 345999999999999999
Q ss_pred CeeEEEEEeCcccccc
Q 031185 81 DKMGKAYLNLQPIISA 96 (164)
Q Consensus 81 ~~lG~~~i~l~~l~~~ 96 (164)
++||++.++|.....+
T Consensus 105 d~IG~~~i~l~~~~~~ 120 (127)
T cd04032 105 DLLGTCSVVPEAGVHE 120 (127)
T ss_pred CeeEEEEEEecCCcee
Confidence 9999999999966543
No 60
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.83 E-value=1.8e-19 Score=116.81 Aligned_cols=90 Identities=23% Similarity=0.393 Sum_probs=79.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC-----ceEEEEEEEcCCCCCC
Q 031185 6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-----GVLSLEVFDKDRFKAD 80 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-----~~L~v~v~d~~~~~~d 80 (164)
=.|+|+|++|++|+ .+.+||||++++++++++|++++++.+|.|+|+|.|.+..+. ..|.++|||++.++++
T Consensus 4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 35899999999998 468999999999999999999999999999999999976432 3799999999999889
Q ss_pred CeeEEEEEeCccccccee
Q 031185 81 DKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 81 ~~lG~~~i~l~~l~~~~~ 98 (164)
++||++.++++++..+..
T Consensus 81 ~~iG~~~i~l~~v~~~~~ 98 (111)
T cd04011 81 TLIGSFKLDVGTVYDQPD 98 (111)
T ss_pred CccEEEEECCccccCCCC
Confidence 999999999998876633
No 61
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.83 E-value=8.6e-20 Score=118.29 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=84.5
Q ss_pred CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185 23 FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLR 100 (164)
Q Consensus 23 ~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 100 (164)
.|.+||||.+.++++ ..+|++++++.||.|||.|.|.+.... ..|.|.|||++.+ ++++||.+.++|+++.....
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~-- 86 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS-- 86 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh--
Confidence 688999999999875 579999999999999999999987653 4799999999999 89999999999998754311
Q ss_pred EEEEecCCceeeEEEeeCCCceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeC
Q 031185 101 HLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDA 161 (164)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~ 161 (164)
..+.|++|.+.+.|+|+++++|.|+
T Consensus 87 ------------------------------------~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 87 ------------------------------------VGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred ------------------------------------ccceeEECCCCCCCEEEEEEEEecC
Confidence 1245778777788999999999985
No 62
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.83 E-value=9.8e-20 Score=120.24 Aligned_cols=103 Identities=24% Similarity=0.307 Sum_probs=87.0
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEE-eeCC---CceEEEEEEEc
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLS-LTEP---VGVLSLEVFDK 74 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~-~~~~---~~~L~v~v~d~ 74 (164)
...+.|.|+|++|+||+..+ .+.+||||++.+. ..+.+|++.++ .||.|||+|.|+ +... ...|.++|||+
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 34578999999999999998 7889999998772 35688999887 999999999998 5432 23899999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
+.++++++||++.++|+++..+.....|+.|.
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999997777777776664
No 63
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.83 E-value=2.2e-19 Score=118.34 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=90.0
Q ss_pred CcceEEEEEEEEeecCCCCC--CCCCCcEEEEEEC---CEEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185 3 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLG---NQMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK 74 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~ 74 (164)
...+.|.|+|++|++|+..+ .+.+||||++++. ....+|++++++.+|.|+|.|.|.+... ...|.|+|||.
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 45678999999999999886 6789999999983 3457899999999999999999998753 24799999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
+..+++++||++.++|.++........|++|.
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99888999999999999998887777777764
No 64
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.83 E-value=1.7e-19 Score=118.89 Aligned_cols=103 Identities=26% Similarity=0.367 Sum_probs=87.0
Q ss_pred CcceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVF 72 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~ 72 (164)
...+.|.|+|++|+||+..+ .+.+||||++++.. ..++|++++++.+|.|||+|.|.+... ...|.++||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 45688999999999999877 57899999999831 458999999999999999999998753 348999999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
|++.++++++||++.+++.++..+.....||.|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999998999999999999998666555666543
No 65
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=3.7e-19 Score=115.96 Aligned_cols=100 Identities=34% Similarity=0.533 Sum_probs=87.8
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeE
Q 031185 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG 84 (164)
|+|+|++|++|+..+ .+.+||||++.+.+ ..++|+++.++.+|.|+|+|.|.+... ...+.++|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999888 78899999999965 448999999999999999999998764 458999999999988899999
Q ss_pred EEEEeCcccccceeeeEEEEecC
Q 031185 85 KAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 85 ~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
++.+++.++..+...+.|++|..
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcC
Confidence 99999999988777777777764
No 66
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.82 E-value=2.7e-19 Score=121.57 Aligned_cols=99 Identities=33% Similarity=0.523 Sum_probs=83.5
Q ss_pred CCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----------------------------EEEEeeeeeCCCCCe
Q 031185 2 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----------------------------QMAKTKVINSCLNPV 51 (164)
Q Consensus 2 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~t~~P~ 51 (164)
.++.+.|.|+|++|++|+..+ .|.+||||++.+.. ..++|+++.++.+|.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 457899999999999999999 88999999999853 136899999999999
Q ss_pred EeceEEEEeeCC-CceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 52 WNEEHSLSLTEP-VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 52 w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
|+|+|.|.+... ...|.|+|||++ +++||++.++++++.. ...+.||.|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999764 348999999997 8899999999999873 334555543
No 67
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.82 E-value=1.4e-18 Score=116.86 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=86.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC----C
Q 031185 4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF----K 78 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~----~ 78 (164)
....|.|.|++|++|+.++ +|||.+.+++.. .+|+++.++.+|.|+|.|.|........|.|.||..+.. .
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 3567999999999998754 899999999888 699999999999999999998766666899999865532 1
Q ss_pred CCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 79 ADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
++++||.+.|++.++..+...+.||++...
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~ 114 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTP 114 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcccEEEEeecC
Confidence 578999999999999988888889888654
No 68
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.81 E-value=1.9e-18 Score=114.21 Aligned_cols=90 Identities=33% Similarity=0.493 Sum_probs=79.3
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 83 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l 83 (164)
.+|.|+|.+|+ |...+ .+.+||||.+++++. .++|++..++.+|.|+|.|.|.+.. ...|.++|||++..+.+++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence 46899999998 54555 778999999999877 7999999999999999999999864 36999999999999899999
Q ss_pred EEEEEeCcccccce
Q 031185 84 GKAYLNLQPIISAA 97 (164)
Q Consensus 84 G~~~i~l~~l~~~~ 97 (164)
|++.++|.++....
T Consensus 80 G~~~i~l~~l~~~~ 93 (125)
T cd04021 80 GEASLDLSDILKNH 93 (125)
T ss_pred EEEEEEHHHhHhhc
Confidence 99999999887653
No 69
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.80 E-value=5.9e-19 Score=118.36 Aligned_cols=101 Identities=23% Similarity=0.356 Sum_probs=88.1
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEEC----CEEEEeeeeeCCCCCeEeceEEEEeeCC----------------CceE
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLG----NQMAKTKVINSCLNPVWNEEHSLSLTEP----------------VGVL 67 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~----------------~~~L 67 (164)
|.|+|++|++|+....+.+|||++++++ ...++|+++.++.+|.|+|+|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5799999999987655789999999997 6779999999999999999999998764 2389
Q ss_pred EEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 68 SLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 68 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
.++|||++..+++++||++.+++.++........|+.|...
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 99999999988899999999999999877777778777644
No 70
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.80 E-value=6.7e-19 Score=117.62 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=82.1
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-------CEEEEeeeeeCCCCCeEeceEEEEeeCC-----CceEEEE
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-------NQMAKTKVINSCLNPVWNEEHSLSLTEP-----VGVLSLE 70 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~L~v~ 70 (164)
..+.|.|+|++|++|+..+ .+.+||||++++. ...++|++++++.||.|||+|.|.+... ...|.++
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 4578999999999999988 7899999999984 3468999999999999999999998752 2489999
Q ss_pred EEEcCCCCCCCeeEEEEEeCcccccc
Q 031185 71 VFDKDRFKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 71 v~d~~~~~~d~~lG~~~i~l~~l~~~ 96 (164)
|||++.++++++||++.++|+++...
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999998899999999999988654
No 71
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.80 E-value=2.8e-18 Score=112.03 Aligned_cols=95 Identities=26% Similarity=0.389 Sum_probs=74.4
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCCCCCCCee
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDRFKADDKM 83 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~~~~d~~l 83 (164)
|.|+|++|++|+.. +.+||||.+++++.. ++|+++++ .+|.|||+|.|.+... ...|.+.+||.+....+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999876 789999999998754 79999999 9999999999998873 23788889998876566667
Q ss_pred EEEEEeCcccccceeeeEEEEecC
Q 031185 84 GKAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 84 G~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
|.+.+ ..+..+...+.|++|.+
T Consensus 79 g~v~l--~~~~~~~~~~~w~~L~~ 100 (117)
T cd08383 79 GKVAL--SKLDLGQGKDEWFPLTP 100 (117)
T ss_pred EEEEe--cCcCCCCcceeEEECcc
Confidence 76554 44444555556666653
No 72
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.80 E-value=4.6e-18 Score=113.71 Aligned_cols=89 Identities=26% Similarity=0.455 Sum_probs=76.0
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEEC-------------CEEEEeeeeeCCCCCeE-eceEEEEeeCCCceEEEEE
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-------------NQMAKTKVINSCLNPVW-NEEHSLSLTEPVGVLSLEV 71 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-------------~~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~~L~v~v 71 (164)
...|.+++|++|+ ++ .|.+|||+++.+. .+.++|++++++.||.| ||+|.|.+.. .+.|.++|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4678999999998 67 8999999999993 23689999999999999 9999999864 36899999
Q ss_pred EEcCCCCC---CCeeEEEEEeCcccccce
Q 031185 72 FDKDRFKA---DDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 72 ~d~~~~~~---d~~lG~~~i~l~~l~~~~ 97 (164)
||++..++ +++||++.+++.++....
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~ 108 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH 108 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence 99765433 789999999999997764
No 73
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.80 E-value=3.1e-19 Score=119.24 Aligned_cols=101 Identities=32% Similarity=0.413 Sum_probs=84.3
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 73 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d 73 (164)
...+.|.|+|++|++|+..+ .+.+||||++.+.+ ...+|++++++.+|.|||+|.|.+... ...|.++|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 35689999999999999988 88999999999842 357999999999999999999998753 2489999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
++..+++++||.+.+++.. .+.....|+.+
T Consensus 90 ~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~ 119 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINA--KGERLRHWLDC 119 (133)
T ss_pred CCCCCCccEEEEEEEecCC--CCchHHHHHHH
Confidence 9998889999999999985 23334455544
No 74
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=2e-18 Score=114.01 Aligned_cols=89 Identities=31% Similarity=0.524 Sum_probs=79.0
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE--EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM--AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK 82 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~ 82 (164)
.|+|+|++|++|+..+ .+.+||||++++++.. .+|.+++++.+|.|||+|.|.+..+. ..|.++|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 3789999999999988 8899999999998765 57888899999999999999876543 489999999999989999
Q ss_pred eEEEEEeCccccc
Q 031185 83 MGKAYLNLQPIIS 95 (164)
Q Consensus 83 lG~~~i~l~~l~~ 95 (164)
||++.+++++...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999997754
No 75
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.79 E-value=1.8e-18 Score=113.62 Aligned_cols=97 Identities=27% Similarity=0.440 Sum_probs=83.6
Q ss_pred EEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeeeCCCCCeEeceEEEEeeC-CCceEEEEEEEcCC----CC
Q 031185 12 VVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDR----FK 78 (164)
Q Consensus 12 i~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~~~f~~~~-~~~~L~v~v~d~~~----~~ 78 (164)
.++|++|+..+ .+.+||||++++... .++|++++++.||.|+|+|.|.+.. ....|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 47899999988 889999999999543 4899999999999999999998653 33489999999997 78
Q ss_pred CCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 79 ADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
++++||++.+++.++........++.|..|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~ 115 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLKGG 115 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence 999999999999999988777777777554
No 76
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.79 E-value=9e-19 Score=117.44 Aligned_cols=101 Identities=28% Similarity=0.387 Sum_probs=84.4
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK 74 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~ 74 (164)
..+.|.|+|++|++|+..+ .+.+||||++.+. + ...+|++++++.||.|+|+|.|.+... ...|.++|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 4578999999999999998 8899999999983 2 247899999999999999999998642 23789999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
+.++++++||++.+++.. .......|+.+.
T Consensus 93 d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred CCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 999999999999999988 344455665553
No 77
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.78 E-value=1.2e-18 Score=116.60 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=81.4
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEc
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDK 74 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~ 74 (164)
..+.|.|+|++|+||+..+ .+.+||||++++.. .+.+|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 4578999999999999988 88999999999932 256899999999999999999998753 23899999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeeeEEEE
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLRHLVH 104 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 104 (164)
+.++++++||++.+.... .+...++|..
T Consensus 93 d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ 120 (136)
T cd08406 93 TEDGKTPNVGHVIIGPAA--SGMGLSHWNQ 120 (136)
T ss_pred CCCCCCCeeEEEEECCCC--CChhHHHHHH
Confidence 999999999999997653 3333444533
No 78
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.78 E-value=7.3e-19 Score=154.30 Aligned_cols=104 Identities=21% Similarity=0.418 Sum_probs=89.3
Q ss_pred CCCcceEEEEEEEEeecCCCCCCCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCC--ceEEEEEEEcCCC
Q 031185 1 MRQPFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPV--GVLSLEVFDKDRF 77 (164)
Q Consensus 1 ~~~~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~--~~L~v~v~d~~~~ 77 (164)
|....|.|.|+|++|.||. .+.+.+||||++.++++ +.+|++++++.||.|||+|.|.+..+. ..|.++|||++.+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 4567899999999999998 33789999999999965 789999999999999999998877764 5799999999999
Q ss_pred CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 78 KADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 78 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
+ ++.+|.+.|++.++..++....||.|.
T Consensus 2054 ~-kd~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200 2054 G-KSSLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred C-CCCCceEEEEHHHHhcCceeeeeeecC
Confidence 5 559999999999998876665555554
No 79
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.78 E-value=2.9e-18 Score=114.22 Aligned_cols=100 Identities=37% Similarity=0.501 Sum_probs=85.3
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC--CceEEEEEEEcCCC
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP--VGVLSLEVFDKDRF 77 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~--~~~L~v~v~d~~~~ 77 (164)
+.|.|+|++|++|+..+ .+.+||||.+.+. ...++|++++++.+|.|+|+|.|.+... ...|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 78999999999999888 7889999999995 2568999999999999999999998764 34899999999988
Q ss_pred CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 78 KADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 78 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
+++++||++.+++.++... ....|+.|.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~ 120 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLL 120 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECc
Confidence 8899999999999988754 344454443
No 80
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.4e-18 Score=133.33 Aligned_cols=103 Identities=32% Similarity=0.401 Sum_probs=88.6
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEEcCC
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFDKDR 76 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d~~~ 76 (164)
....|.|+|++|++|+..+ .|.+||||++++.. .+.+|++.++++||.|||+|.|.+... ...|.++|||.|+
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 4567999999999999999 77899999999943 468999999999999999999996643 2499999999999
Q ss_pred CCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 77 FKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 77 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
++++++||.+.++|..+........|.++.
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~ 274 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQ 274 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccc
Confidence 999999999999999887766555565554
No 81
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.78 E-value=3.1e-18 Score=113.45 Aligned_cols=102 Identities=10% Similarity=0.213 Sum_probs=82.0
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCC-CCeEeceEEEEeeCCCc--eEEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCL-NPVWNEEHSLSLTEPVG--VLSLEVFD 73 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~-~P~w~e~~~f~~~~~~~--~L~v~v~d 73 (164)
+..++|+|.|++|+||+... .+..||||++++. -.+++|++.+++. +|.|||+|.|++..... .|.++|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 45788999999999999876 6667999999982 1358899999985 69999999999986533 78899999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
++..+++++||++.+..+.. .+...++|.++
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred CCCCcCCceEEEEEECCccC-CchhhhhHHHH
Confidence 99988999999999998763 22234555444
No 82
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.78 E-value=1.3e-18 Score=116.40 Aligned_cols=100 Identities=26% Similarity=0.370 Sum_probs=82.5
Q ss_pred cceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEE
Q 031185 4 PFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVF 72 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~ 72 (164)
..+.|.|.|++|+||+..+ .+.+||||++++.. .+.+|++.+++.||.|||.|.|.+.... ..|.++||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 5688999999999999887 24589999999843 2468999999999999999999987542 38999999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
|++.++++++||++.+.+.. .+...++|.++
T Consensus 93 d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 93 NQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred eCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 99999999999999999874 34444555443
No 83
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.77 E-value=1.6e-18 Score=115.72 Aligned_cols=103 Identities=29% Similarity=0.402 Sum_probs=87.6
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEc
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDK 74 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~ 74 (164)
..+.|.|+|++|++|+..+ .+.+||||++++.. ..++|+++.++.+|.|+|+|.|.+.... ..|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 4578999999999999988 88899999999843 2578999999999999999999987653 5899999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
+..+++++||.+.+++++ .+...+.|+.|...
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998889999999999998 45556667666543
No 84
>PLN03008 Phospholipase D delta
Probab=99.77 E-value=6.4e-18 Score=138.01 Aligned_cols=125 Identities=26% Similarity=0.456 Sum_probs=103.4
Q ss_pred cceEEEEEEEEeecCCCCC-------------------------------------------CCCCCcEEEEEECCEE-E
Q 031185 4 PFGQLKVTVVQGKRLVIRD-------------------------------------------FKSSDPYVVLKLGNQM-A 39 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-------------------------------------------~~~~dpyv~v~~~~~~-~ 39 (164)
..|.|.++|.+|++|+.++ .+++||||.+.+++.+ .
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 4588999999999998521 1256999999998764 6
Q ss_pred EeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCCceeeEEEeeCC
Q 031185 40 KTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDS 119 (164)
Q Consensus 40 ~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 119 (164)
+|++++++.||.|||+|.|.+......|.|+|||++.++ +++||++.|++.++..+...+.|++|....
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~---------- 160 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGAS---------- 160 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccC----------
Confidence 999999999999999999999887779999999999995 689999999999999988888888776540
Q ss_pred CceeeccceEEEECCEEEeeeeEEEceeeeeeEEEEEEEEeCC
Q 031185 120 ENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVKIVDAP 162 (164)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~v~~~l~~~~~~ 162 (164)
+ -.....|+|+++|+|.|+.
T Consensus 161 --------------~---------kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 161 --------------G---------KPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred --------------C---------CCCCCCcEEEEEEEEEEcc
Confidence 0 0122468999999999975
No 85
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=1.3e-17 Score=109.94 Aligned_cols=100 Identities=28% Similarity=0.370 Sum_probs=84.2
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVF 72 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~ 72 (164)
+..+.|.|+|++|++|+..+ .+.+||||++.+. ....+|++++++.+|.|+++|.|..... ...|.++||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 34578999999999999888 7889999999983 2368999999999999999999963322 248999999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccceeeeEEE
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISAARLRHLV 103 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 103 (164)
|++.+ .+++||.+.+++.++..+...+.++
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence 99988 8999999999999998876665553
No 86
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.77 E-value=4.2e-18 Score=114.18 Aligned_cols=101 Identities=33% Similarity=0.445 Sum_probs=83.2
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 73 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d 73 (164)
+..|.|.|+|++|++|+..+ .+.+||||++.+. + ..++|++.+++.+|.|+|+|.|.+.... ..|.++|||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 45689999999999999988 8899999999984 2 3578999999999999999999986432 279999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
++.+++|++||++.+++... +....+|+++
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~ 121 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNAT--GAELRHWSDM 121 (136)
T ss_pred CCCCCCCceeEEEEECCccC--ChHHHHHHHH
Confidence 99999999999999999753 3333445443
No 87
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.77 E-value=1.3e-18 Score=116.72 Aligned_cols=102 Identities=29% Similarity=0.461 Sum_probs=84.2
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCC---CceEEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEP---VGVLSLEVFD 73 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~---~~~L~v~v~d 73 (164)
...+.|.|+|++|+||+..+ .+.+||||++.+. + ...+|++++++.+|.|||+|.|.+... ...|.|+|||
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 35688999999999999888 8899999999982 2 347899999999999999999997632 2489999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
++.++++++||++.+++... +...+.|+++.
T Consensus 92 ~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 92 KDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred CCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 99998999999999999875 33344555443
No 88
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.76 E-value=8.6e-18 Score=112.80 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=83.4
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVF 72 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~ 72 (164)
...+.|.|+|++|+||+..+ .+.+||||++.+.. .+++|++.+++.||.|||+|.|.+.... ..|.++||
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 35689999999999999988 88899999999932 2478999999999999999999987532 38999999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
|.+.++++++||++.+.+..... ...++|+.+
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~ 123 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEM 123 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHH
Confidence 99999999999999998874432 122455544
No 89
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.75 E-value=3.3e-19 Score=135.52 Aligned_cols=93 Identities=40% Similarity=0.547 Sum_probs=84.0
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEE-----CCEEEEeeeeeCCCCCeEeceEEEEeeCCCc--eEEEEEEEcCC
Q 031185 5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL-----GNQMAKTKVINSCLNPVWNEEHSLSLTEPVG--VLSLEVFDKDR 76 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~--~L~v~v~d~~~ 76 (164)
...|+|+|.+|+||.+++ +|.+|||+++.+ +..+++|++++.++||+|||+|.|.+.+.+. .|.++|||||.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 357899999999999999 999999999999 2345899999999999999999999987654 99999999999
Q ss_pred CCCCCeeEEEEEeCcccccce
Q 031185 77 FKADDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 77 ~~~d~~lG~~~i~l~~l~~~~ 97 (164)
.+++||+|+..+.++++....
T Consensus 259 TsRNDFMGslSFgisEl~K~p 279 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP 279 (683)
T ss_pred cccccccceecccHHHHhhcc
Confidence 999999999999999887763
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.75 E-value=1e-17 Score=112.12 Aligned_cols=89 Identities=24% Similarity=0.443 Sum_probs=76.0
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 73 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d 73 (164)
...+.|.|+|++|++|+..+ .+.+||||++.+. . ...+|++++++.||.|||+|.|.+.... ..|.++|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 35688999999999999988 8899999999972 2 3478999999999999999999986432 269999999
Q ss_pred cCCCCCCCeeEEEEEeCc
Q 031185 74 KDRFKADDKMGKAYLNLQ 91 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~ 91 (164)
++..+++++||++.+...
T Consensus 91 ~d~~~~~~~iG~~~l~~~ 108 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQY 108 (135)
T ss_pred CCCCCCCcEEEEEEEcCc
Confidence 999999999999886543
No 91
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.75 E-value=1.4e-16 Score=105.52 Aligned_cols=90 Identities=32% Similarity=0.517 Sum_probs=77.0
Q ss_pred eEEEEEEEEeecCCCCC---CCCCCcEEEEEE------CCEEEEeeeeeCCC-CCeEeceEEEEeeCCC-ceEEEEEEEc
Q 031185 6 GQLKVTVVQGKRLVIRD---FKSSDPYVVLKL------GNQMAKTKVINSCL-NPVWNEEHSLSLTEPV-GVLSLEVFDK 74 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~------~~~~~~T~~~~~t~-~P~w~e~~~f~~~~~~-~~L~v~v~d~ 74 (164)
-.|+|+|++|++|+..+ .+..||||++++ .....+|++..++. +|.|+|+|.|.+..+. ..|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999998766 568899999999 24568999988765 9999999999988654 3789999999
Q ss_pred CCCCCCCeeEEEEEeCcccccc
Q 031185 75 DRFKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~ 96 (164)
+.. ++++||++.+++.++..+
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g 102 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG 102 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc
Confidence 988 899999999999988544
No 92
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.75 E-value=7.3e-18 Score=113.13 Aligned_cols=103 Identities=23% Similarity=0.335 Sum_probs=85.0
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcC
Q 031185 4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKD 75 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~ 75 (164)
..+.|.|+|++|+||+..+.+.+||||++.+.. .+++|++.+++.||.|||+|.|.+.... ..|.++||+.+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 467899999999999887766799999999842 3578999999999999999999986432 38999999999
Q ss_pred CCCCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 76 RFKADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
..+++++||++.+.......+...++|.++.
T Consensus 93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 9889999999999876665565556665543
No 93
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.75 E-value=1.5e-17 Score=111.27 Aligned_cols=101 Identities=26% Similarity=0.368 Sum_probs=82.2
Q ss_pred CcceEEEEEEEEeecCCCCC-CCCCCcEEEEEEC--C---EEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEE
Q 031185 3 QPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLG--N---QMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFD 73 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d 73 (164)
...+.|+|+|++|++|+..+ .+.+||||++.+. + ..++|++.+++.+|.|+|+|.|.+.... ..|.++|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45689999999999999998 8899999999983 2 2578999999999999999999976432 268999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeeeEEEEe
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 105 (164)
++.++++++||.+.+++.. .+.....|+.+
T Consensus 91 ~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~ 120 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNA--DGQGREHWNEM 120 (134)
T ss_pred CCCCCCCceeEEEEECCCC--CCchHHHHHHH
Confidence 9999999999999998762 23333445443
No 94
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.73 E-value=7.7e-17 Score=104.15 Aligned_cols=80 Identities=31% Similarity=0.518 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEc-------C
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDK-------D 75 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~-------~ 75 (164)
|.|+|.+|+||+ +.+||||.+.++. ...+|+++++|.||.|||+|.|.+.. ...|.+.|||+ +
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 679999999995 5689999998853 35899999999999999999999974 56999999998 4
Q ss_pred CCCCCCeeEEEEEeCcc
Q 031185 76 RFKADDKMGKAYLNLQP 92 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~ 92 (164)
..+.|+++|.+.+.|+.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 56789999998888864
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.72 E-value=9.3e-17 Score=103.83 Aligned_cols=88 Identities=27% Similarity=0.486 Sum_probs=74.0
Q ss_pred EEEEEeecCCCCC-CCCCCcEEEEEECC------EEEEeeeeeCCCCCeEeceEEEEeeCC-----CceEEEEEEEcCCC
Q 031185 10 VTVVQGKRLVIRD-FKSSDPYVVLKLGN------QMAKTKVINSCLNPVWNEEHSLSLTEP-----VGVLSLEVFDKDRF 77 (164)
Q Consensus 10 v~i~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~e~~~f~~~~~-----~~~L~v~v~d~~~~ 77 (164)
+-.++|++|+..+ .+.+||||++++.+ ..++|++++++.+|.|+ +|.|..... ...|.++|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 4466899999999 88999999999843 24899999999999999 688875421 35899999999999
Q ss_pred CCCCeeEEEEEeCccccccee
Q 031185 78 KADDKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 78 ~~d~~lG~~~i~l~~l~~~~~ 98 (164)
++|++||++.++++++.....
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSP 103 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCC
Confidence 999999999999999985543
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.68 E-value=4.4e-16 Score=95.54 Aligned_cols=80 Identities=40% Similarity=0.642 Sum_probs=71.5
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC---EEEEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCCCCCCCe
Q 031185 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN---QMAKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDRFKADDK 82 (164)
Q Consensus 8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~~~~d~~ 82 (164)
|+|+|++|++|+..+ .+..+||+++.++. ..++|++..++.+|.|+++|.|.+.... ..|.|+|||.+..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988 77999999999966 6799999999999999999999966443 489999999999988999
Q ss_pred eEEEE
Q 031185 83 MGKAY 87 (164)
Q Consensus 83 lG~~~ 87 (164)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 97
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.63 E-value=6.8e-16 Score=122.86 Aligned_cols=99 Identities=23% Similarity=0.341 Sum_probs=87.6
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCee
Q 031185 6 GQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKM 83 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~l 83 (164)
..|.|+|.+|+||+.++ .|..||||.+.+++.. .+|.++.+++.|.|.|.|.|.++.....|.+.|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 45899999999999999 9999999999997654 8999999999999999999999999899999999999 8899999
Q ss_pred EEEEEeCcccccceeeeEEEEe
Q 031185 84 GKAYLNLQPIISAARLRHLVHV 105 (164)
Q Consensus 84 G~~~i~l~~l~~~~~~~~~~~l 105 (164)
|.+.|.=.++......+.|+.|
T Consensus 84 GKvai~re~l~~~~~~d~W~~L 105 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSL 105 (800)
T ss_pred ceeeeeHHHHhhCCCCccceec
Confidence 9999988877666544444444
No 98
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=8.4e-15 Score=97.01 Aligned_cols=91 Identities=29% Similarity=0.331 Sum_probs=76.8
Q ss_pred EEEEEEEEeecCCCCC---CC--CCCcEEEEEECC---EEEEeeeeeCCCC--CeEeceEEEEeeCC-------------
Q 031185 7 QLKVTVVQGKRLVIRD---FK--SSDPYVVLKLGN---QMAKTKVINSCLN--PVWNEEHSLSLTEP------------- 63 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~---~~--~~dpyv~v~~~~---~~~~T~~~~~t~~--P~w~e~~~f~~~~~------------- 63 (164)
.|+|.|.+|++++..+ .| .+||||++.+.+ .+++|.++.++.+ |.||+.|.|++...
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999966543 45 499999999954 5699999999999 99999999987651
Q ss_pred -----------CceEEEEEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185 64 -----------VGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 64 -----------~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 97 (164)
...|.++|||.|.+++|++||.++++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 1289999999999999999999999999886664
No 99
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.7e-15 Score=120.17 Aligned_cols=100 Identities=25% Similarity=0.512 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC------
Q 031185 5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF------ 77 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~------ 77 (164)
...++++|++|.+|..++ .|++|||+.+.++..+.+|+++...+||+|||.|.|+.++..+.+++.|||.+.-
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHH
Confidence 457899999999999999 9999999999999999999999999999999999999999989999999998763
Q ss_pred -----CCCCeeEEEEEeCcccccceeeeEEEEec
Q 031185 78 -----KADDKMGKAYLNLQPIISAARLRHLVHVS 106 (164)
Q Consensus 78 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 106 (164)
..|+|+|+..|.+..+. +.++.||.|.
T Consensus 374 qkl~resddflgqtvievrtls--gemdvwynle 405 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLE 405 (1283)
T ss_pred HHhhhcccccccceeEEEEecc--cchhhhcchh
Confidence 46899999999988653 3455555554
No 100
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.60 E-value=2.2e-14 Score=89.87 Aligned_cols=96 Identities=40% Similarity=0.664 Sum_probs=82.3
Q ss_pred EEEEEEEeecCCCCC-CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeC-CCceEEEEEEEcCCCCCCCeeE
Q 031185 8 LKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTE-PVGVLSLEVFDKDRFKADDKMG 84 (164)
Q Consensus 8 L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~-~~~~L~v~v~d~~~~~~d~~lG 84 (164)
|.|.|++|++|.... ....+|||.+.+.+ ..++|.+..++.+|.|++.|.|.+.. ....|.++||+.+....+.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 478999999998766 67899999999987 88999999999999999999999987 4569999999999887789999
Q ss_pred EEEEeCcccc-cceeeeEEE
Q 031185 85 KAYLNLQPII-SAARLRHLV 103 (164)
Q Consensus 85 ~~~i~l~~l~-~~~~~~~~~ 103 (164)
.+.+++.++. .......|+
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred EEEEeHHHhhhcCCcCccee
Confidence 9999999987 444444443
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.59 E-value=2.7e-14 Score=89.77 Aligned_cols=92 Identities=38% Similarity=0.689 Sum_probs=80.7
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCE---EEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCCCCC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ---MAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFKADD 81 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~~d~ 81 (164)
.|.+.|++|++|.... .+..+||+.+.+... ..+|++..++.+|.|++.|.|.+... ...|.++||+....+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 3789999999998877 567899999999764 79999999999999999999999887 679999999999887789
Q ss_pred eeEEEEEeCccccccee
Q 031185 82 KMGKAYLNLQPIISAAR 98 (164)
Q Consensus 82 ~lG~~~i~l~~l~~~~~ 98 (164)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999998866643
No 102
>PLN02223 phosphoinositide phospholipase C
Probab=99.51 E-value=6.5e-13 Score=104.95 Aligned_cols=96 Identities=29% Similarity=0.472 Sum_probs=79.4
Q ss_pred ceEEEEEEEEeecCCCC-----C-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEEE
Q 031185 5 FGQLKVTVVQGKRLVIR-----D-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVF 72 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~-----~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~ 72 (164)
...|.|+|++|++++.. + ....||||++.+.+ ..++|.+..++.||.|||+|.|.+..+.. .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35799999999987411 2 34679999999933 35678888889999999999999988765 6899999
Q ss_pred EcCCCCCCCeeEEEEEeCcccccceeee
Q 031185 73 DKDRFKADDKMGKAYLNLQPIISAARLR 100 (164)
Q Consensus 73 d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 100 (164)
|++..+.++|+|++.+++..+..+.++-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V 515 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGIRAV 515 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCceeE
Confidence 9999888999999999999998886543
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.48 E-value=4.4e-13 Score=112.12 Aligned_cols=97 Identities=28% Similarity=0.490 Sum_probs=86.9
Q ss_pred CcceEEEEEEEEeecCCCCC---CCCCCcEEEEEECC-EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC
Q 031185 3 QPFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGN-QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK 78 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~ 78 (164)
.+.|+|.++|.+|++|...+ .+..|||+.+...+ ...+|++.+++.||.|||+|.+.+....+.|.++|||.+...
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~ 512 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK 512 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccC
Confidence 47899999999999999887 67899999999854 347999999999999999999999988889999999988888
Q ss_pred CCCeeEEEEEeCcccccceee
Q 031185 79 ADDKMGKAYLNLQPIISAARL 99 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~~~~ 99 (164)
+|+.+|++.++|..+......
T Consensus 513 sd~vvG~~~l~L~~L~~~~~~ 533 (1227)
T COG5038 513 SDKVVGSTQLDLALLHQNPVK 533 (1227)
T ss_pred CcceeeeEEechHHhhhcccc
Confidence 999999999999988776544
No 104
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.46 E-value=4e-13 Score=112.35 Aligned_cols=107 Identities=30% Similarity=0.447 Sum_probs=94.7
Q ss_pred CCcceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCC-CceEEEEEEEcCCCC
Q 031185 2 RQPFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEP-VGVLSLEVFDKDRFK 78 (164)
Q Consensus 2 ~~~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~L~v~v~d~~~~~ 78 (164)
-...|.|+|.+..|.||+..+ .+.+||||++.+.++ .++|+++++++||.|||.+.+++... .+.+.+.|+|++...
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC
Confidence 356789999999999999999 888999999999776 69999999999999999999999854 458999999999999
Q ss_pred CCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 79 ADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
+++.||.+.++|..+..+........+.+.
T Consensus 1116 knd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred CccccccccccHhhcCcCCccceeeeccCc
Confidence 999999999999999888777666566544
No 105
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=6.6e-13 Score=103.87 Aligned_cols=89 Identities=34% Similarity=0.512 Sum_probs=77.3
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CC---EEEEeeeeeCCCCCeEeceEEEEeeCCCc---eEEEEEEEc
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GN---QMAKTKVINSCLNPVWNEEHSLSLTEPVG---VLSLEVFDK 74 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~---~L~v~v~d~ 74 (164)
..|.|+|.|++|++|+.++ .+..||||++.+ +. .+.+|.+.+++.||.|||+|.|.+..... .|.|+|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 4689999999999999999 889999999998 22 35889999999999999999998875432 789999999
Q ss_pred CCCCCCCeeEEEEEeCcc
Q 031185 75 DRFKADDKMGKAYLNLQP 92 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~ 92 (164)
+.++.+++||.+.+....
T Consensus 376 d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccccceeeEEEecCCC
Confidence 999999999988876654
No 106
>PLN02270 phospholipase D alpha
Probab=99.44 E-value=2.5e-12 Score=105.57 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=88.5
Q ss_pred cceEEEEEEEEeecCCCC-----------------C--CCCCCcEEEEEECCEE-EEeeeeeCC-CCCeEeceEEEEeeC
Q 031185 4 PFGQLKVTVVQGKRLVIR-----------------D--FKSSDPYVVLKLGNQM-AKTKVINSC-LNPVWNEEHSLSLTE 62 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~-----------------~--~~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~w~e~~~f~~~~ 62 (164)
..|.|.++|.+|++|+.. . .+.+|||+.+.+++.+ .+|+++.+. .||.|+|+|.+++..
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 568999999999999863 1 2457999999998765 799999884 699999999999998
Q ss_pred CCceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 63 PVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 63 ~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
....+.|.|.|.+.++ ..+||.+.+++.++..+...+.|+++...
T Consensus 86 ~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~ 130 (808)
T PLN02270 86 MASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDN 130 (808)
T ss_pred CcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCC
Confidence 8789999999999994 56999999999999888777777776544
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=99.39 E-value=1.2e-11 Score=99.56 Aligned_cols=94 Identities=32% Similarity=0.408 Sum_probs=78.3
Q ss_pred ceEEEEEEEEeecCCCCC-------CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEE
Q 031185 5 FGQLKVTVVQGKRLVIRD-------FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV 71 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-------~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v 71 (164)
...|.|+|++|++++... ....||||++.+. ..+.+|+++.++.||.|+|+|.|.+..+.. .|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 457999999998875321 2345999999983 356899999999999999999999887654 688999
Q ss_pred EEcCCCCCCCeeEEEEEeCccccccee
Q 031185 72 FDKDRFKADDKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~ 98 (164)
||++..+.++|+|++.+++..+..+.+
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR 575 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR 575 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce
Confidence 999998889999999999998888765
No 108
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.38 E-value=4.8e-12 Score=102.28 Aligned_cols=94 Identities=30% Similarity=0.467 Sum_probs=79.3
Q ss_pred EEEEEEEEeecCCCCC--C---CCCCcEEEEEECC-----EEEEee-eeeCCCCCeEeceEEEEeeCCCc-eEEEEEEEc
Q 031185 7 QLKVTVVQGKRLVIRD--F---KSSDPYVVLKLGN-----QMAKTK-VINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDK 74 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~--~---~~~dpyv~v~~~~-----~~~~T~-~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~d~ 74 (164)
+|.|.|+++.+++... . ...|||+.+++.+ ...+|+ +..++-+|.|+|+|.|.+..+.. -|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999655433 1 3579999999843 457898 55669999999999999998866 778999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeee
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLR 100 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~ 100 (164)
+..++|+|+|+..+++..+..+.++-
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhV 722 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHV 722 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeee
Confidence 99999999999999999998887765
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.35 E-value=8.6e-12 Score=100.27 Aligned_cols=96 Identities=28% Similarity=0.424 Sum_probs=79.9
Q ss_pred ceEEEEEEEEeecCCCC------C-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEE
Q 031185 5 FGQLKVTVVQGKRLVIR------D-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV 71 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~------~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v 71 (164)
..+|.|+|+.+.+++.. + ....||||++.+. ....+|++..++.||.|+|+|.|.+..+.. .|.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999986421 1 2357999999992 345788888889999999999999887754 788999
Q ss_pred EEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185 72 FDKDRFKADDKMGKAYLNLQPIISAARLR 100 (164)
Q Consensus 72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 100 (164)
+|++...+|+|+|+..+++..+..+.++-
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V 576 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIHAV 576 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccceE
Confidence 99999889999999999999998887654
No 110
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.32 E-value=5.5e-11 Score=95.48 Aligned_cols=96 Identities=28% Similarity=0.396 Sum_probs=78.9
Q ss_pred ceEEEEEEEEeecCC--CCC-----CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEE
Q 031185 5 FGQLKVTVVQGKRLV--IRD-----FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEV 71 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~--~~~-----~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v 71 (164)
...|.|+|+.|.+++ ... ....||||++.+. ..+.+|+++.++.+|.|+|+|.|.+..+.- .|.+.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998743 111 2457999999993 345789999998999999999999887654 788999
Q ss_pred EEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185 72 FDKDRFKADDKMGKAYLNLQPIISAARLR 100 (164)
Q Consensus 72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 100 (164)
+|+|..+.++|+|+..+++..+..+.++-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~V 559 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIRAF 559 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccceE
Confidence 99998888999999999999998887643
No 111
>PLN02228 Phosphoinositide phospholipase C
Probab=99.30 E-value=9.2e-11 Score=94.01 Aligned_cols=95 Identities=24% Similarity=0.343 Sum_probs=78.2
Q ss_pred eEEEEEEEEeecCCC---CC----CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeE-eceEEEEeeCCCc-eEEEEE
Q 031185 6 GQLKVTVVQGKRLVI---RD----FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVW-NEEHSLSLTEPVG-VLSLEV 71 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~---~~----~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~-~L~v~v 71 (164)
..|.|+|++|++|+. .+ ....||||++.+. ...++|+++.++.+|.| +|+|.|.+..+.- .|.+.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998732 11 2347999999983 34578999988899999 9999999887654 788999
Q ss_pred EEcCCCCCCCeeEEEEEeCcccccceeee
Q 031185 72 FDKDRFKADDKMGKAYLNLQPIISAARLR 100 (164)
Q Consensus 72 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 100 (164)
+|++..+.++|+|++.+++..+..+.++-
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~V 539 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVRAV 539 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCeeEE
Confidence 99998888999999999999998887654
No 112
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.30 E-value=2.2e-11 Score=76.53 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=72.1
Q ss_pred EEEEEEEeecCCCCC----CCCCCcEEEEEECCE-EEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCe
Q 031185 8 LKVTVVQGKRLVIRD----FKSSDPYVVLKLGNQ-MAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDK 82 (164)
Q Consensus 8 L~v~i~~a~~L~~~~----~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~ 82 (164)
|.|+|..|+++.... .+.++||+.+++++. +.+|++ +.||.|||+|.|++.. ...+.+.|||...- ..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-NNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-CcEEEEEEEeCCCC-eecc
Confidence 678999999998766 567899999999876 788877 4799999999999954 57999999998654 4568
Q ss_pred eEEEEEeCccccccee
Q 031185 83 MGKAYLNLQPIISAAR 98 (164)
Q Consensus 83 lG~~~i~l~~l~~~~~ 98 (164)
+|...+.++++.+.-+
T Consensus 76 i~llW~~~sdi~Ee~R 91 (109)
T cd08689 76 VGLLWLRLSDIAEEIR 91 (109)
T ss_pred eeeehhhHHHHHHHHH
Confidence 9999999999887644
No 113
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.21 E-value=3.6e-11 Score=95.12 Aligned_cols=92 Identities=27% Similarity=0.521 Sum_probs=83.2
Q ss_pred ceEEEEEEEEeecCCCCC--CCCCCcEEEEEECCEEEEeeeeeCCCCCeEe-ceEEEEeeCCC---ceEEEEEEEcCCCC
Q 031185 5 FGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGNQMAKTKVINSCLNPVWN-EEHSLSLTEPV---GVLSLEVFDKDRFK 78 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~-e~~~f~~~~~~---~~L~v~v~d~~~~~ 78 (164)
.|.|-|+|..|++||.++ ....|.|+.+++++..++|.+..+++||.|| +.|.|++.... ..|.+.+.|++..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 578999999999999999 6678999999999999999999999999999 77899988653 38999999999999
Q ss_pred CCCeeEEEEEeCcccccc
Q 031185 79 ADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l~~~ 96 (164)
.+|-||.+.|+++.+.-.
T Consensus 82 andaigkv~i~idpl~~e 99 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLE 99 (1169)
T ss_pred cccccceeeeccChHHHH
Confidence 999999999999977543
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.10 E-value=7.9e-10 Score=90.24 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=79.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECC------EEEEeeeeeCCCCCeEe-ceEEEEeeCCCc-eEEEEEEEcCC
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN------QMAKTKVINSCLNPVWN-EEHSLSLTEPVG-VLSLEVFDKDR 76 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~w~-e~~~f~~~~~~~-~L~v~v~d~~~ 76 (164)
...|.|.|+.|+.|+..+-+-..|||++.+-+ ..++|.+..+++||.|+ +.|.|.+..+.- .|.+.|++.|.
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 35789999999999866555667999999832 34566777889999999 999999998754 88999999999
Q ss_pred CCCCCeeEEEEEeCccccccee
Q 031185 77 FKADDKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 77 ~~~d~~lG~~~i~l~~l~~~~~ 98 (164)
++...|||++..++..+..+-+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred cCCcceeeeeecchhhhhccce
Confidence 9888899999999998877644
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.09 E-value=3.2e-11 Score=97.16 Aligned_cols=91 Identities=33% Similarity=0.518 Sum_probs=80.4
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCE-------EEEeeeeeCCCCCeEeceEEEEeeCCCc-----eEEEEE
Q 031185 5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQ-------MAKTKVINSCLNPVWNEEHSLSLTEPVG-----VLSLEV 71 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~w~e~~~f~~~~~~~-----~L~v~v 71 (164)
...|.|.|+.|+++.+-| +|.+||||++.+... .++|+++.+|+||+|+|.|.|.++.... .+.++|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 446778899999999999 999999999999654 3799999999999999999999986532 789999
Q ss_pred EEcCCCCCCCeeEEEEEeCccccc
Q 031185 72 FDKDRFKADDKMGKAYLNLQPIIS 95 (164)
Q Consensus 72 ~d~~~~~~d~~lG~~~i~l~~l~~ 95 (164)
+|+|.++.+||-|++.+.|+++..
T Consensus 1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eccceecccccchHHHHhhCCCCC
Confidence 999999999999999999998754
No 116
>PLN02352 phospholipase D epsilon
Probab=98.89 E-value=2.9e-08 Score=81.84 Aligned_cols=97 Identities=19% Similarity=0.358 Sum_probs=74.4
Q ss_pred cceEEEEEEEEeecCCCC----C--CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcC
Q 031185 4 PFGQLKVTVVQGKRLVIR----D--FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKD 75 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~----~--~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~ 75 (164)
..|.|.++|.+|+-+... . ....+||+.+.+++.+ .+| .+..||.|+|+|.+++.... ..+.+.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 568999999999843221 1 1123999999998765 577 56669999999999998876 589999988
Q ss_pred CCCCCCeeEEEEEeCccccccee-eeEEEEecCC
Q 031185 76 RFKADDKMGKAYLNLQPIISAAR-LRHLVHVSSG 108 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~ 108 (164)
.-.+||.+.+++.++..+.. .+.|+++...
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~ 113 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIME 113 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccC
Confidence 25699999999999988755 6666666543
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.87 E-value=3.8e-10 Score=91.13 Aligned_cols=101 Identities=24% Similarity=0.428 Sum_probs=76.8
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-------------E------------------EEEeeeeeCCCCCeE
Q 031185 5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-------------Q------------------MAKTKVINSCLNPVW 52 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-------------~------------------~~~T~~~~~t~~P~w 52 (164)
.-.+.|.+.+|.+|..++ .|.+|||+...+-. + .+-|.+.+.|+||.|
T Consensus 113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW 192 (1103)
T KOG1328|consen 113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW 192 (1103)
T ss_pred cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence 334566778899999999 99999999987711 0 134778888999999
Q ss_pred eceEEEEeeCCCc-eEEEEEEEcCCC---------------------------------C---CCCeeEEEEEeCccccc
Q 031185 53 NEEHSLSLTEPVG-VLSLEVFDKDRF---------------------------------K---ADDKMGKAYLNLQPIIS 95 (164)
Q Consensus 53 ~e~~~f~~~~~~~-~L~v~v~d~~~~---------------------------------~---~d~~lG~~~i~l~~l~~ 95 (164)
+|.|.|.+..-.. .+.+-+||+|.- + .|||+|.+.|++.++..
T Consensus 193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 9999999987644 899999998763 2 38999999999998865
Q ss_pred ceeeeEEEEec
Q 031185 96 AARLRHLVHVS 106 (164)
Q Consensus 96 ~~~~~~~~~l~ 106 (164)
.+ .+.||.|.
T Consensus 273 ~G-ld~WFkLe 282 (1103)
T KOG1328|consen 273 DG-LDQWFKLE 282 (1103)
T ss_pred ch-HHHHhccC
Confidence 42 33344443
No 118
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.83 E-value=2.8e-09 Score=89.87 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=85.1
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCC----CceEEEEEEEc
Q 031185 5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEP----VGVLSLEVFDK 74 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~----~~~L~v~v~d~ 74 (164)
.|+|.|.|..|++|+.-. +..+||||+.++.. .+++|+++++|.+|.|||.+.+.-... ...|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999996555 77899999999932 358999999999999999998873322 14899999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
+.+..+.|+|.+.|+|..+...++...||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 999889999999999999877776666766653
No 119
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.9e-08 Score=80.84 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=89.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEEC-------CEEEEeeeeeCCCCCeEeceEEEEeeCCCc----eEEEEEEEc
Q 031185 6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-------NQMAKTKVINSCLNPVWNEEHSLSLTEPVG----VLSLEVFDK 74 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~----~L~v~v~d~ 74 (164)
..++|+|+.|.+|.....|...||+.+.+- +.++.|++..++-.|.+||+|.|-+.+... +|.+.|.|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 457899999999987767888999999982 234788899999999999999999876543 899999999
Q ss_pred CCCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 75 DRFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
...+.|..+|.+.++|.++...+....|++|...
T Consensus 1205 CFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGSCACWVPLGRR 1238 (1283)
T ss_pred eeecccceeeeeeeehhhHhhcCceeEeeecccc
Confidence 9888899999999999999999999999988643
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.79 E-value=3.9e-09 Score=87.71 Aligned_cols=89 Identities=31% Similarity=0.444 Sum_probs=79.4
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECCEE--EEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEEEEcCCCCC
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQM--AKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKA 79 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~d~~~~~~ 79 (164)
....++|++++|.+|.+.| .|.+|||+.+.++++. -++..+.+++||+|.+.|.+...-+.. .+.++|||+|..+.
T Consensus 611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 4456789999999999999 9999999999999877 567788999999999999988776654 88999999999999
Q ss_pred CCeeEEEEEeCcc
Q 031185 80 DDKMGKAYLNLQP 92 (164)
Q Consensus 80 d~~lG~~~i~l~~ 92 (164)
|+.||+..++|++
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999885
No 121
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.78 E-value=6.9e-09 Score=83.62 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=76.8
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEE----EEeeeeeCCCCCeEeceEEEEeeCC---------------C-ceE
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM----AKTKVINSCLNPVWNEEHSLSLTEP---------------V-GVL 67 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~---------------~-~~L 67 (164)
+.+.+.+++++-+..++.+|||+.+...+.. .+|++.+.|.+|.|+|.|.|.+... . ..|
T Consensus 133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 3344555566555556679999999985443 5999999999999999999998755 1 278
Q ss_pred EEEEEE-cCCCCCCCeeEEEEEeCcccccceeeeEEEEecC
Q 031185 68 SLEVFD-KDRFKADDKMGKAYLNLQPIISAARLRHLVHVSS 107 (164)
Q Consensus 68 ~v~v~d-~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 107 (164)
.+.+|+ ++...+++|+|++.+++..+........||.|..
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp 253 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP 253 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence 899999 5555569999999999998886666666766643
No 122
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=5.1e-07 Score=67.33 Aligned_cols=85 Identities=31% Similarity=0.327 Sum_probs=72.2
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCc---eEEEEEEEc
Q 031185 4 PFGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVG---VLSLEVFDK 74 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~---~L~v~v~d~ 74 (164)
....|.|+++++..|..++ .+.+|||+..++.. .+++|.+.+++.+|.|+++|.|.+..... .+.|.|||.
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 4566899999999999999 89999999999842 34889999999999999999999887643 889999999
Q ss_pred CCCCCCCeeEEEEE
Q 031185 75 DRFKADDKMGKAYL 88 (164)
Q Consensus 75 ~~~~~d~~lG~~~i 88 (164)
+.-...+++|-...
T Consensus 311 ~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 311 DIGKSNDSIGGSML 324 (362)
T ss_pred CCCcCccCCCcccc
Confidence 98877888887543
No 123
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.36 E-value=4.1e-07 Score=69.72 Aligned_cols=102 Identities=22% Similarity=0.375 Sum_probs=80.3
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCC------------ceEE
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPV------------GVLS 68 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~------------~~L~ 68 (164)
.|.+.|+++.+++... -.-.|.|+.+.+. .++.+|.+++.+.+|.|+|.|.+.+.... ..++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 3556677777765543 2234778887762 34578999999999999999999987621 1689
Q ss_pred EEEEEcCCC-CCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 69 LEVFDKDRF-KADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 69 v~v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
|++|++..+ ..|.++|.+.+.+..+......+.+++|.+|
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG 488 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG 488 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence 999998865 5688999999999999999998889899888
No 124
>PLN02964 phosphatidylserine decarboxylase
Probab=98.33 E-value=1.2e-06 Score=71.77 Aligned_cols=91 Identities=23% Similarity=0.377 Sum_probs=76.0
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCcE-EEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCc-eEEEEEEEcCCCCC
Q 031185 2 RQPFGQLKVTVVQGKRLVIRDFKSSDPY-VVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVG-VLSLEVFDKDRFKA 79 (164)
Q Consensus 2 ~~~~~~L~v~i~~a~~L~~~~~~~~dpy-v~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~-~L~v~v~d~~~~~~ 79 (164)
++..|.+.+++++|+ ++ ..|+| +.+.++.+.++|.+.++|.+|+||+...|.+..... ...+.|||.+.+++
T Consensus 50 ~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 123 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK 123 (644)
T ss_pred ccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence 467889999999986 22 24776 567779999999999999999999999998886654 55899999999999
Q ss_pred CCeeEEEEEeCccccccee
Q 031185 80 DDKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 80 d~~lG~~~i~l~~l~~~~~ 98 (164)
++++|.++++|.++...+.
T Consensus 124 n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred HHhhhheeecHhhccHHHH
Confidence 9999999998887766643
No 125
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.12 E-value=1.1e-05 Score=52.74 Aligned_cols=91 Identities=18% Similarity=0.342 Sum_probs=67.5
Q ss_pred EEEEEEEeecCCCCC--------------CCCCCcEEEEEE----CCEEEEeeeeeCCCCCeEeceEEEEee--------
Q 031185 8 LKVTVVQGKRLVIRD--------------FKSSDPYVVLKL----GNQMAKTKVINSCLNPVWNEEHSLSLT-------- 61 (164)
Q Consensus 8 L~v~i~~a~~L~~~~--------------~~~~dpyv~v~~----~~~~~~T~~~~~t~~P~w~e~~~f~~~-------- 61 (164)
|.|.|++|.+|+... .-.-|+|+.+.+ +++..+|+++.++.-|.|+.++.|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 356778888776221 112489999996 456799999999999999999999876
Q ss_pred CC--------CceEEEEEEEcCCC----------CCCCeeEEEEEeCccccccee
Q 031185 62 EP--------VGVLSLEVFDKDRF----------KADDKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 62 ~~--------~~~L~v~v~d~~~~----------~~d~~lG~~~i~l~~l~~~~~ 98 (164)
.. ...+.++||+...- .+|-+||.+.|++.++.....
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs 135 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS 135 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc
Confidence 10 12789999986643 234589999999999877643
No 126
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.03 E-value=9.4e-06 Score=49.47 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=63.7
Q ss_pred EEEEEeecCCCCC--CCCCCcEEEEEE--C-CEEEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCCCCCC
Q 031185 10 VTVVQGKRLVIRD--FKSSDPYVVLKL--G-NQMAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFKADD 81 (164)
Q Consensus 10 v~i~~a~~L~~~~--~~~~dpyv~v~~--~-~~~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~~~d~ 81 (164)
++++.+++|.... ...+..|++--+ . ...++|.+.+...||.|.|+|.|.+.... -.|-+.|+. .+.+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 6888999987665 334445665433 2 34589999999999999999999876432 288899998 444778
Q ss_pred eeEEEEEeCcccccc
Q 031185 82 KMGKAYLNLQPIISA 96 (164)
Q Consensus 82 ~lG~~~i~l~~l~~~ 96 (164)
.||.+.+.++++-+.
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999976544
No 127
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.01 E-value=1.2e-06 Score=73.45 Aligned_cols=101 Identities=23% Similarity=0.319 Sum_probs=78.8
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeC----------CCceEEEEEEEcC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTE----------PVGVLSLEVFDKD 75 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~----------~~~~L~v~v~d~~ 75 (164)
.++++|.+|+.|...+ .+.+|||+.+.+.++.+.|.++.+|++|.|+.+..|.-.. ....+.+++||.+
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 4567788899998888 7889999999999999999999999999999999885221 1126789999999
Q ss_pred CCCCCCeeEEEEEeCcccccceeeeEEEEecCC
Q 031185 76 RFKADDKMGKAYLNLQPIISAARLRHLVHVSSG 108 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~ 108 (164)
..+.++|+|+......-+.. .....|+++..+
T Consensus 287 r~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg 318 (1105)
T KOG1326|consen 287 RSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRG 318 (1105)
T ss_pred hhchHHhhcccccceEEEec-CCccceEEeecc
Confidence 99999999998766554433 333345555433
No 128
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=9.1e-07 Score=66.00 Aligned_cols=94 Identities=29% Similarity=0.347 Sum_probs=76.9
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEc
Q 031185 5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDK 74 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~ 74 (164)
..++.++|..|.+|.+++ .+..|||+...+.. .+.+|++..++.||.|+|+.....-... ..+.+.|.|+
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 456889999999999999 88999999999843 2378889999999999998776643222 2778899999
Q ss_pred CCCCCCCeeEEEEEeCccccccee
Q 031185 75 DRFKADDKMGKAYLNLQPIISAAR 98 (164)
Q Consensus 75 ~~~~~d~~lG~~~i~l~~l~~~~~ 98 (164)
+.+..++++|+..+++..+...+.
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q~ 195 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQR 195 (362)
T ss_pred cccccccCcccchhhhhccChhhc
Confidence 999889999999988887766544
No 129
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=3.7e-06 Score=63.80 Aligned_cols=103 Identities=23% Similarity=0.337 Sum_probs=82.6
Q ss_pred cceEEEEEEEEeecCCCCC--CCCCCcEEEEEECC-----EEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEE-EcC
Q 031185 4 PFGQLKVTVVQGKRLVIRD--FKSSDPYVVLKLGN-----QMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVF-DKD 75 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~-d~~ 75 (164)
..|.+.|.|++|++|..+. ...++||++|++.+ .+.+|+...+|..|.+..+..|.-..+...|.+.|| |..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence 4678999999999998776 33689999999943 247899999999999999999998888889999999 467
Q ss_pred CCCCCCeeEEEEEeCcccccce-eeeEEEEec
Q 031185 76 RFKADDKMGKAYLNLQPIISAA-RLRHLVHVS 106 (164)
Q Consensus 76 ~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~ 106 (164)
.+..+.|+|.+++-+.++-... ....||.+.
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf 378 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF 378 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence 7777889999999999885554 333444443
No 130
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.83 E-value=4e-05 Score=61.14 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=66.7
Q ss_pred EEEeecCCCCC-CCCCCcEEEEEE--CC----EEEEeeeeeCCCCCeEeceEEEEee-----CCCceEEEEEEEcCCCCC
Q 031185 12 VVQGKRLVIRD-FKSSDPYVVLKL--GN----QMAKTKVINSCLNPVWNEEHSLSLT-----EPVGVLSLEVFDKDRFKA 79 (164)
Q Consensus 12 i~~a~~L~~~~-~~~~dpyv~v~~--~~----~~~~T~~~~~t~~P~w~e~~~f~~~-----~~~~~L~v~v~d~~~~~~ 79 (164)
..+|.+|..++ ++++|||..+.- +. ..++|.+++++++|.|.+ |.+... .....+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 34578888888 999999998765 22 238999999999999998 554433 223488899999999989
Q ss_pred CCeeEEEEEeCccccc
Q 031185 80 DDKMGKAYLNLQPIIS 95 (164)
Q Consensus 80 d~~lG~~~i~l~~l~~ 95 (164)
++++|.+..++..+..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999998875
No 131
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.74 E-value=0.0015 Score=44.48 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=69.0
Q ss_pred cceEEEEEEEEeecCCCCCC---CCCCc--EEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCC--------------
Q 031185 4 PFGQLKVTVVQGKRLVIRDF---KSSDP--YVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPV-------------- 64 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~~---~~~dp--yv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~-------------- 64 (164)
..-.|++.|..++-.-..-. +..+. .+.+.+.+++++|+.+..+.+|.|+|.|-|++....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 44567888887764322111 33333 344555899999999999999999999999987553
Q ss_pred ceEEEEEEEcCCCCCCCeeEEEEEeCcccccceee
Q 031185 65 GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARL 99 (164)
Q Consensus 65 ~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 99 (164)
..+.+.|..-+..+...++|...++...+...+..
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~ 121 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG 121 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccCCC
Confidence 26778887777766668999999988877766543
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.48 E-value=0.0051 Score=42.15 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=60.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEc
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDK 74 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~ 74 (164)
...++|+|+.+.++...+ ..+-|+.+.+ +++. ..|+.+.. .++.|||.+.|++.-.. ..|.+++|+.
T Consensus 7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 346889999999987643 3578888766 4443 34444443 67999999999876332 2899999986
Q ss_pred CCCC----CCCeeEEEEEeCccc
Q 031185 75 DRFK----ADDKMGKAYLNLQPI 93 (164)
Q Consensus 75 ~~~~----~d~~lG~~~i~l~~l 93 (164)
.... ....+|.+.++|-+.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 5421 224699999998873
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.48 E-value=0.0039 Score=43.40 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=61.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEc
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDK 74 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~ 74 (164)
...+.|+|..+.++...+ ...+-|+.+.+ +++. ..|+.......+.|+|.+.|++.-.. ..|.|.||+.
T Consensus 7 ~~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 7 EEKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 346899999999997622 34566777655 5443 45655555677999999999865322 2899999986
Q ss_pred CCCC----------------CCCeeEEEEEeCccc
Q 031185 75 DRFK----------------ADDKMGKAYLNLQPI 93 (164)
Q Consensus 75 ~~~~----------------~d~~lG~~~i~l~~l 93 (164)
.... .+..||.+.++|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5321 246899999988874
No 134
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.42 E-value=0.0043 Score=42.36 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=60.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcC
Q 031185 6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD 75 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~ 75 (164)
..++|++....++...+....+-|+.+.+ +++. ..|.....+.++.|||.+.|++.-.. ..|.+.+|+..
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 45778888888776522334567777765 4442 34444433468999999999865322 28999999977
Q ss_pred CCC--CCCeeEEEEEeCccc
Q 031185 76 RFK--ADDKMGKAYLNLQPI 93 (164)
Q Consensus 76 ~~~--~d~~lG~~~i~l~~l 93 (164)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 553 457999999999874
No 135
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.36 E-value=0.0057 Score=42.01 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=52.6
Q ss_pred CCCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcCCCCCCCeeEEEEEeCccc
Q 031185 24 KSSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFKADDKMGKAYLNLQPI 93 (164)
Q Consensus 24 ~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~~~~~d~~lG~~~i~l~~l 93 (164)
..++-|+.+.+ +++. ..|....-+..+.|||.+.|++.-.+ ..|.|+||+....++...+|.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34678888876 4443 35655555778999999999876432 38999999987655667999999999875
No 136
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.17 E-value=0.0026 Score=53.66 Aligned_cols=89 Identities=24% Similarity=0.413 Sum_probs=67.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECC-------EEEEeeeeeC-CCCCeEece-EEEE-eeCC-CceEEEEEEE
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGN-------QMAKTKVINS-CLNPVWNEE-HSLS-LTEP-VGVLSLEVFD 73 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~-t~~P~w~e~-~~f~-~~~~-~~~L~v~v~d 73 (164)
.+.+.|+|+++.-|..+. ...||.|.+-+ +.++|++... +.||.|+|. |.|. +..+ -..|.|.||+
T Consensus 702 A~t~sV~VISgqFLSdrk---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred EeeEEEEEEeeeeccccc---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 467899999999997654 44899999832 3477877766 899999964 6776 2223 2389999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccceeee
Q 031185 74 KDRFKADDKMGKAYLNLQPIISAARLR 100 (164)
Q Consensus 74 ~~~~~~d~~lG~~~i~l~~l~~~~~~~ 100 (164)
.+ ..+||+-.++++.+..+..+-
T Consensus 779 Eg----gK~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred cC----CceeeeeccchhcccCcceeE
Confidence 85 469999999999887776543
No 137
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.07 E-value=0.042 Score=36.72 Aligned_cols=89 Identities=25% Similarity=0.258 Sum_probs=60.1
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCcEEEEEECCEE---EEeeeeeC-CCCCeEeceEEEEeeCC---------CceEEEEE
Q 031185 5 FGQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQM---AKTKVINS-CLNPVWNEEHSLSLTEP---------VGVLSLEV 71 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~---~~T~~~~~-t~~P~w~e~~~f~~~~~---------~~~L~v~v 71 (164)
.-.+.+.|++..+++. .....|+.+..++.. ..|..... ...-.|++.|.+.+... ...+.+.|
T Consensus 6 kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred eEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 4467889999998875 233455666665543 44544433 55678999998875421 11788889
Q ss_pred EEcCCCCCCCeeEEEEEeCcccccc
Q 031185 72 FDKDRFKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 72 ~d~~~~~~d~~lG~~~i~l~~l~~~ 96 (164)
+.....++...+|.+.++|.+....
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCc
Confidence 8875433336899999999988775
No 138
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.04 E-value=0.017 Score=40.17 Aligned_cols=89 Identities=21% Similarity=0.223 Sum_probs=61.8
Q ss_pred ceEEEEEEEEeecCCCCC-CCCCCcEEEEEE--CCEE----EEeeeee----CCCCCeEeceEEEEeeCCC----ceEEE
Q 031185 5 FGQLKVTVVQGKRLVIRD-FKSSDPYVVLKL--GNQM----AKTKVIN----SCLNPVWNEEHSLSLTEPV----GVLSL 69 (164)
Q Consensus 5 ~~~L~v~i~~a~~L~~~~-~~~~dpyv~v~~--~~~~----~~T~~~~----~t~~P~w~e~~~f~~~~~~----~~L~v 69 (164)
...+.|+|.++.+++... ....+-|+.+.+ +++. ..|+... -...+.|||.+.|++.-.. ..|.+
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 456889999999987765 445778888766 5443 3443222 1335779999999875322 28999
Q ss_pred EEEEcCCCC---------CCCeeEEEEEeCccc
Q 031185 70 EVFDKDRFK---------ADDKMGKAYLNLQPI 93 (164)
Q Consensus 70 ~v~d~~~~~---------~d~~lG~~~i~l~~l 93 (164)
.+|+..... .+..||.+.++|-+.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999866543 356999999998874
No 139
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.02 E-value=0.006 Score=46.86 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC--------CceEEEEEEEcC-CCC
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP--------VGVLSLEVFDKD-RFK 78 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~--------~~~L~v~v~d~~-~~~ 78 (164)
+.+.|++|++.+... .....+..++++....|..+..+..|.|+..+.-++... ...|++++|..+ ..+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 678899999997652 345678889999999999999999999999998877632 128999999988 455
Q ss_pred CCCeeEEEEEeCccc---ccc--eeeeEEEEecCC
Q 031185 79 ADDKMGKAYLNLQPI---ISA--ARLRHLVHVSSG 108 (164)
Q Consensus 79 ~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~ 108 (164)
..+.+|.+.++|... ..+ .....|+.|-+-
T Consensus 80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred cceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 778999999999988 444 445567776543
No 140
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.81 E-value=0.056 Score=37.81 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=55.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE--CCEE---EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcCC
Q 031185 6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL--GNQM---AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDR 76 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~~ 76 (164)
..++|+|..+..+..........|+.+.+ ++.. .+|.....+.++.|||.+.|++.-.+ ..|.+.||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 45788888886432212233445666655 4432 35665555778999999999876432 289999998532
Q ss_pred CC----------------CCCeeEEEEEeCccc
Q 031185 77 FK----------------ADDKMGKAYLNLQPI 93 (164)
Q Consensus 77 ~~----------------~d~~lG~~~i~l~~l 93 (164)
.. .+..||-+.+.|-+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcC
Confidence 11 245778888887763
No 141
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=96.79 E-value=0.093 Score=36.34 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=55.8
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEE----------CCE-EEEeeeeeCC-----CCCeEeceEEEEeeCCC--c--eE
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKL----------GNQ-MAKTKVINSC-----LNPVWNEEHSLSLTEPV--G--VL 67 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~----------~~~-~~~T~~~~~t-----~~P~w~e~~~f~~~~~~--~--~L 67 (164)
+.=.|..|.+. ...+.||+..+ +.. ...|.+.... ..-.|+.-|.+.+.... . .|
T Consensus 4 v~G~I~~a~~f-----~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 4 VIGEIESAEGF-----EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEEECC-----CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34567788875 34578998887 223 4566665432 34678877776655332 2 89
Q ss_pred EEEEEEcCCCCCCCeeEEEEEeCccc
Q 031185 68 SLEVFDKDRFKADDKMGKAYLNLQPI 93 (164)
Q Consensus 68 ~v~v~d~~~~~~d~~lG~~~i~l~~l 93 (164)
.++||..|..+++...|-..+.|..-
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPTQ 104 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCCC
Confidence 99999999999999998877776543
No 142
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.77 E-value=0.0027 Score=47.75 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=65.7
Q ss_pred CcceEEEEEEEEeecCCCCC---CCCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCC
Q 031185 3 QPFGQLKVTVVQGKRLVIRD---FKSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFK 78 (164)
Q Consensus 3 ~~~~~L~v~i~~a~~L~~~~---~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~ 78 (164)
...|.|.+++..+++|.... .-.-+-||++..+.+. .+|.+-.....-.|.|+|..++... ..+.+-||.|+.-.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQR 126 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCchh
Confidence 35689999999999997654 3356889999887654 6777766677888999999988764 57888899988876
Q ss_pred CCCeeEEEEEeCcc
Q 031185 79 ADDKMGKAYLNLQP 92 (164)
Q Consensus 79 ~d~~lG~~~i~l~~ 92 (164)
++.+.-..-+.+..
T Consensus 127 RHKLC~~g~l~~~~ 140 (442)
T KOG1452|consen 127 RHKLCHLGLLEAFV 140 (442)
T ss_pred hccccccchhhhhh
Confidence 67654333344333
No 143
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=96.62 E-value=0.045 Score=33.76 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=49.7
Q ss_pred CCCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCccc
Q 031185 24 KSSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPI 93 (164)
Q Consensus 24 ~~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l 93 (164)
|..+-.+.+.+++.. .+|.-. ...+..|++.|.+++... .+|.|.||-.|. ..+.|...+.|.+.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRs-RELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERS-RELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcCeEEeecccc-ccccccccceeEEEeecc-cEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 446778889998765 555544 345889999999999875 699999998875 35778888888874
No 144
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.22 E-value=0.084 Score=35.41 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=40.1
Q ss_pred EeeeeeCC-CCCeEeceEEEEeeCC----CceEEEEEEEcCCCCCC----CeeEEEEEeCccc
Q 031185 40 KTKVINSC-LNPVWNEEHSLSLTEP----VGVLSLEVFDKDRFKAD----DKMGKAYLNLQPI 93 (164)
Q Consensus 40 ~T~~~~~t-~~P~w~e~~~f~~~~~----~~~L~v~v~d~~~~~~d----~~lG~~~i~l~~l 93 (164)
.|....-+ ..+.|+|.+.|++.-. ...|.+.||........ ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56666666 7999999999997532 23899999997765444 6999999999876
No 145
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.92 E-value=0.024 Score=45.79 Aligned_cols=61 Identities=31% Similarity=0.493 Sum_probs=48.6
Q ss_pred EEeeeeeCCCCCeEeceEEEEeeCCC-ceEEEEEEEcCC----CCCCCeeEEEEEeCcccccceee
Q 031185 39 AKTKVINSCLNPVWNEEHSLSLTEPV-GVLSLEVFDKDR----FKADDKMGKAYLNLQPIISAARL 99 (164)
Q Consensus 39 ~~T~~~~~t~~P~w~e~~~f~~~~~~-~~L~v~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~ 99 (164)
.+|.++.+..+|.|.+.|.+...... +.|.+++++-+. +...+|+|++...+..+......
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~ 108 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL 108 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence 58999999999999999988766543 488899998664 34578999999999988766443
No 146
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=95.63 E-value=0.45 Score=32.94 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=54.3
Q ss_pred CCCcEEEEEECCEE-EEeeeeeC--CCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccccc
Q 031185 25 SSDPYVVLKLGNQM-AKTKVINS--CLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 25 ~~dpyv~v~~~~~~-~~T~~~~~--t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~ 96 (164)
...-|+++.++++. .+|+...- ...-.+++.|.+.+..-...|.++||.... ..+.+|+.+.+++......
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 45678899887765 55555444 334567888999988776799999999988 4788999999998866554
No 147
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.38 E-value=0.54 Score=33.20 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=40.6
Q ss_pred EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCCC-C-CCeeEEEEEeCc
Q 031185 38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFK-A-DDKMGKAYLNLQ 91 (164)
Q Consensus 38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~~-~-d~~lG~~~i~l~ 91 (164)
.++|.+...+.+|.|+|++.+.++... ..|.+++++..... + ...+|-+.++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 478889999999999999999887542 37888887744321 1 257899988884
No 148
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.29 E-value=0.3 Score=30.68 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=44.9
Q ss_pred EEEEEEEeecCCCCCCC-CCCcEEEEEE--CCEE----EEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcC
Q 031185 8 LKVTVVQGKRLVIRDFK-SSDPYVVLKL--GNQM----AKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKD 75 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~-~~dpyv~v~~--~~~~----~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~ 75 (164)
+.+.+....+......+ ..+-|+.+.+ +++. ..|....-...+.|||.+.|++.-.. ..|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 55667777776554422 2478888876 4443 35555555667999999999865332 28999999854
No 149
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.66 E-value=0.53 Score=33.40 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=40.6
Q ss_pred EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCC----CCCCeeEEEEEeCc
Q 031185 38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF----KADDKMGKAYLNLQ 91 (164)
Q Consensus 38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~----~~d~~lG~~~i~l~ 91 (164)
.++|.+.....+|.|+|++.+.++... ..|.+++++.... .....+|.+.++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 478888888999999999999887542 3888888875421 12357898888874
No 150
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.44 E-value=0.27 Score=34.49 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=47.2
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEE---C-C-----------------EEEEeeeeeCCCCCeEeceEEEEeeC
Q 031185 4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKL---G-N-----------------QMAKTKVINSCLNPVWNEEHSLSLTE 62 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~---~-~-----------------~~~~T~~~~~t~~P~w~e~~~f~~~~ 62 (164)
..+.|.|+..++.-=........+-.|.+++ + . ..+.|.+...+.+|.|+|+|.+.++.
T Consensus 5 ~rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~yh~k~P~f~deiKi~LP~ 84 (184)
T PF14429_consen 5 YRNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYYHNKNPQFNDEIKIQLPP 84 (184)
T ss_dssp --EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----TT-SS-EEEEEEEEEE-C
T ss_pred eeeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEecCCCCCccEEEEEEcCc
Confidence 4567777777764311111223455565555 1 1 12567777788899999999999886
Q ss_pred CC---ceEEEEEEEcCCCCC---CCeeEEEEEeCcc
Q 031185 63 PV---GVLSLEVFDKDRFKA---DDKMGKAYLNLQP 92 (164)
Q Consensus 63 ~~---~~L~v~v~d~~~~~~---d~~lG~~~i~l~~ 92 (164)
.. ..|.+++++...-.+ ...+|.+.++|-+
T Consensus 85 ~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 85 DLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp CCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred hhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 53 288899998654321 2699999999987
No 151
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=94.36 E-value=0.4 Score=30.66 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=36.2
Q ss_pred EEEEEEC-CEEEEeeeeeCCCCCeEeceEEEEeeCCC--------ceEEEEEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185 29 YVVLKLG-NQMAKTKVINSCLNPVWNEEHSLSLTEPV--------GVLSLEVFDKDRFKADDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 29 yv~v~~~-~~~~~T~~~~~t~~P~w~e~~~f~~~~~~--------~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 97 (164)
||.+.+- -+.+.|.++. +.+|.++.+..|.+.... ..+.++++..-.. ....+|.+++++..+.+..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESN 77 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCC
Confidence 5666664 3557777776 789999999999887653 2789999887633 4679999999999988654
No 152
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.26 E-value=2.8 Score=29.22 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=38.6
Q ss_pred EEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCC-----CCCCeeEEEEEeCcc
Q 031185 39 AKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF-----KADDKMGKAYLNLQP 92 (164)
Q Consensus 39 ~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~-----~~d~~lG~~~i~l~~ 92 (164)
++|-+..+ .+|.|++++.+.++... ..|.+++++...- .....+|-+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 89999999999986543 3888999986532 235689999999875
No 153
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=90.42 E-value=2.2 Score=29.93 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=40.8
Q ss_pred EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCCC------CCCeeEEEEEeCcc
Q 031185 38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRFK------ADDKMGKAYLNLQP 92 (164)
Q Consensus 38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~~------~d~~lG~~~i~l~~ 92 (164)
...|.+...+.+|.|.|++.+.++... ..|.+++++.+.-. ....+|-+.++|-.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 467888888999999999999887542 28888888744321 13579999888764
No 154
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=89.58 E-value=3.2 Score=29.27 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=41.3
Q ss_pred EEEeeeeeCCCCCeEeceEEEEeeCCC---ceEEEEEEEcCCC---------CCCCeeEEEEEeCcc
Q 031185 38 MAKTKVINSCLNPVWNEEHSLSLTEPV---GVLSLEVFDKDRF---------KADDKMGKAYLNLQP 92 (164)
Q Consensus 38 ~~~T~~~~~t~~P~w~e~~~f~~~~~~---~~L~v~v~d~~~~---------~~d~~lG~~~i~l~~ 92 (164)
...|.+...+.+|.|.|++.+.++... ..|.+++++.+.. .....+|-+.++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 467888888999999999998877542 2888999886521 123578999988865
No 155
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=87.05 E-value=12 Score=29.21 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=52.6
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEe--ceEEEEeeCCCceEEEEEEEcCCCCCCCeeEE
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWN--EEHSLSLTEPVGVLSLEVFDKDRFKADDKMGK 85 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~--e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~ 85 (164)
|.|.|.+-.++. .....|+.+..+....+|..+.-+..-.-+ +.....+..-+.+|++.+|-.... +...||.
T Consensus 60 LLVeI~EI~~i~----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgd 134 (508)
T PTZ00447 60 LLVKINEIFNIN----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQ 134 (508)
T ss_pred EEEEehhhhccc----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEE
Confidence 445555544442 244678888888888888655443332223 444444555556999999998877 6678999
Q ss_pred EEEeCcc
Q 031185 86 AYLNLQP 92 (164)
Q Consensus 86 ~~i~l~~ 92 (164)
+.+.++.
T Consensus 135 I~InIn~ 141 (508)
T PTZ00447 135 IKIDINA 141 (508)
T ss_pred EEecccH
Confidence 9998874
No 156
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.56 E-value=0.78 Score=38.38 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=47.7
Q ss_pred CCCcEEEEEECCEE-EEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccc
Q 031185 25 SSDPYVVLKLGNQM-AKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPII 94 (164)
Q Consensus 25 ~~dpyv~v~~~~~~-~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~ 94 (164)
..+||+.+.+.... ..+.+.+.+..|.|+++|.+.+... ..+.+.|+.......+.+...+++..++..
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 46899998886544 3555577799999999999997765 678888888765545544444444443333
No 157
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.50 E-value=17 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=20.1
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEeC
Q 031185 66 VLSLEVFDKDRFKADDKMGKAYLNL 90 (164)
Q Consensus 66 ~L~v~v~d~~~~~~d~~lG~~~i~l 90 (164)
.|.++||+.|.+++.+..|-...-+
T Consensus 75 rl~~qiw~~dnfgr~eiagyg~~~l 99 (175)
T KOG4028|consen 75 RLHFQIWHHDNFGRCEIAGYGFCHL 99 (175)
T ss_pred eeeeeeeecCcccceeecccceEec
Confidence 8999999999998888776655444
No 158
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=71.91 E-value=31 Score=30.45 Aligned_cols=67 Identities=18% Similarity=0.351 Sum_probs=41.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCcEEEEEE----CCE----EEEeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEE
Q 031185 6 GQLKVTVVQGKRLVIRDFKSSDPYVVLKL----GNQ----MAKTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFD 73 (164)
Q Consensus 6 ~~L~v~i~~a~~L~~~~~~~~dpyv~v~~----~~~----~~~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d 73 (164)
..++|+++.+.++... ...|-++.+.. |.+ ...|.-+.....|.||+...|++.-.+ ..|.+.||.
T Consensus 343 ~~frI~l~~is~~n~~--~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNLP--ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCCC--cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 3467778777654322 23344554443 433 245666666889999999999876432 277777776
Q ss_pred c
Q 031185 74 K 74 (164)
Q Consensus 74 ~ 74 (164)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 4
No 159
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=67.70 E-value=4.5 Score=35.08 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCcEEEEEECCEE-EEeeeeeCC-CCCeEeceEEEEeeCCCceEEEEEEEcCCCCCCCeeEEEEEeCcccccceeeeEEE
Q 031185 26 SDPYVVLKLGNQM-AKTKVINSC-LNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLV 103 (164)
Q Consensus 26 ~dpyv~v~~~~~~-~~T~~~~~t-~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 103 (164)
.++|+.+.+.... .+|....+. .+|.|.+.|..........+.+.+-+.+..+-..++|.+.++...+..+.....|+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~ 217 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWF 217 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcccccccee
Confidence 3788888886544 556666565 68999999988877776788999988888765789999999999988876666666
Q ss_pred Eec
Q 031185 104 HVS 106 (164)
Q Consensus 104 ~l~ 106 (164)
.+-
T Consensus 218 ~Il 220 (887)
T KOG1329|consen 218 PIL 220 (887)
T ss_pred eee
Confidence 554
No 160
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=62.04 E-value=44 Score=28.49 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=55.8
Q ss_pred EEEEEEEeecCCCCCCCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCCC---CCCCeeE
Q 031185 8 LKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRF---KADDKMG 84 (164)
Q Consensus 8 L~v~i~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~~---~~d~~lG 84 (164)
+.|.|.+..+|+... ...=.||.+.+.+.+.+|.....+ .|.|..+=.|....+...+++.+|....- -.|.-+|
T Consensus 343 mevvvmevqglksva-pnrivyctmevegeklqtdqaeas-kp~wgtqgdfstthplpvvkvklftestgvlaledkelg 420 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVA-PNRIVYCTMEVEGEKLQTDQAEAS-KPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKELG 420 (1218)
T ss_pred eeEEEeeeccccccC-CCeeEEEEEEecccccccchhhhc-CCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhhC
Confidence 456677777776543 122358999888888888766443 79999988888777766778888875531 1456678
Q ss_pred EEEEeC
Q 031185 85 KAYLNL 90 (164)
Q Consensus 85 ~~~i~l 90 (164)
++.+.-
T Consensus 421 rvil~p 426 (1218)
T KOG3543|consen 421 RVILQP 426 (1218)
T ss_pred eEEEec
Confidence 876643
No 161
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=57.29 E-value=6 Score=34.52 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=56.8
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCcEEEEEEC-----CEEEEeeeeeCCCCCeEeceEEEEeeCCCceEEEEEEEcCC--
Q 031185 4 PFGQLKVTVVQGKRLVIRDFKSSDPYVVLKLG-----NQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDR-- 76 (164)
Q Consensus 4 ~~~~L~v~i~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~L~v~v~d~~~-- 76 (164)
..|.+++.+++|..+.. ..+.||...++ ..+.+|.++.+|..|.|++.+..++-.. ..+.+..++.+.
T Consensus 757 ~ygflh~~vhsat~lkq----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~s-qS~r~~~~ek~~~~ 831 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIES-QSSRLEKTEKSTPV 831 (1112)
T ss_pred cccceeeeecccccccc----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhc-cccchhhhcccchH
Confidence 56788899999988853 45678876653 3467899999999999999998887654 233344443221
Q ss_pred --------CCCCCeeEEEEEeCccc
Q 031185 77 --------FKADDKMGKAYLNLQPI 93 (164)
Q Consensus 77 --------~~~d~~lG~~~i~l~~l 93 (164)
...+...|+.++.+..-
T Consensus 832 ~k~~~~~~~~~~~~~~~~~~~l~~~ 856 (1112)
T KOG4269|consen 832 EKLIDSHSQNSQNEEKRSRMKLDPQ 856 (1112)
T ss_pred HHhhhccchhhcccccccccccCcc
Confidence 22344566666665543
No 162
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=52.67 E-value=1.2e+02 Score=24.44 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=39.4
Q ss_pred CCCcEEEEEECCEEEEeeeeeC--CCCCeE---e-ceEEEEeeC--------CC------ceEEEEEEEcCC-----C-C
Q 031185 25 SSDPYVVLKLGNQMAKTKVINS--CLNPVW---N-EEHSLSLTE--------PV------GVLSLEVFDKDR-----F-K 78 (164)
Q Consensus 25 ~~dpyv~v~~~~~~~~T~~~~~--t~~P~w---~-e~~~f~~~~--------~~------~~L~v~v~d~~~-----~-~ 78 (164)
....||+|++.+-..+|..+.- ..++.- + ---.|.+.+ +. ..|+|.||.-.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 3567999999877666654433 111111 1 112333321 11 269999998432 2 3
Q ss_pred CCCeeEEEEEeCcc
Q 031185 79 ADDKMGKAYLNLQP 92 (164)
Q Consensus 79 ~d~~lG~~~i~l~~ 92 (164)
...+||.+.++|+.
T Consensus 115 ~~klLG~v~vpldl 128 (460)
T PF06219_consen 115 SGKLLGKVRVPLDL 128 (460)
T ss_pred cceEEEEEEEEecc
Confidence 56799999999873
No 163
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.29 E-value=13 Score=31.40 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=38.0
Q ss_pred EeeeeeCCCCCeEeceEEEEeeCCC----ceEEEEEEEcCCCCCCCeeEEEEEeCcc
Q 031185 40 KTKVINSCLNPVWNEEHSLSLTEPV----GVLSLEVFDKDRFKADDKMGKAYLNLQP 92 (164)
Q Consensus 40 ~T~~~~~t~~P~w~e~~~f~~~~~~----~~L~v~v~d~~~~~~d~~lG~~~i~l~~ 92 (164)
+|....-+..-.|||.+.+++.-.+ ..|.+++|+......-.|+|..++.+..
T Consensus 67 ~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 67 RTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 3433333334459999999877543 2899999998877677899998887764
No 164
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=51.61 E-value=1.2 Score=37.11 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=37.0
Q ss_pred EEEEEeecCCCCC-----CCCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEe
Q 031185 10 VTVVQGKRLVIRD-----FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSL 60 (164)
Q Consensus 10 v~i~~a~~L~~~~-----~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~ 60 (164)
++++.|.++++.- .-..++++...++++.++|+....+.+|.|||. .++.
T Consensus 284 l~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~ 338 (975)
T KOG2419|consen 284 LTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-ERED 338 (975)
T ss_pred HHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-cccc
Confidence 3445555553322 235789999999999999999999999999996 4443
No 165
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=51.27 E-value=73 Score=21.44 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCCCcEEEEEECCEEEEeeeeeCCCCCeEeceEEEEeeCC-------------CceEEEEEEEcCCCCCCCeeEEEEEeC
Q 031185 24 KSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEP-------------VGVLSLEVFDKDRFKADDKMGKAYLNL 90 (164)
Q Consensus 24 ~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-------------~~~L~v~v~d~~~~~~d~~lG~~~i~l 90 (164)
...|-|..+++-++-.+|+.....---.++|.|.|+-... ...+.++++...... ...|+..+-+.
T Consensus 18 ~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~ 96 (140)
T PF14909_consen 18 DKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENT 96 (140)
T ss_pred CCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEeccc
Confidence 3568999999999999999887777778899999974322 126788888877653 67888888777
Q ss_pred cccccc
Q 031185 91 QPIISA 96 (164)
Q Consensus 91 ~~l~~~ 96 (164)
.++.-.
T Consensus 97 rDfLfP 102 (140)
T PF14909_consen 97 RDFLFP 102 (140)
T ss_pred cceEcC
Confidence 776544
No 166
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=51.21 E-value=66 Score=20.91 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=50.1
Q ss_pred EEEEEEEEeecCCCCC-CCCCCcEEEEEECCEEEE-eeeeeCCCCCeE-eceEEEEeeCC---CceEEEEEEEcCC-CCC
Q 031185 7 QLKVTVVQGKRLVIRD-FKSSDPYVVLKLGNQMAK-TKVINSCLNPVW-NEEHSLSLTEP---VGVLSLEVFDKDR-FKA 79 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-~~~~dpyv~v~~~~~~~~-T~~~~~t~~P~w-~e~~~f~~~~~---~~~L~v~v~d~~~-~~~ 79 (164)
.|.++-+.-.++|..+ .+.+.||+.++-+..... +...... .... ...+.+.+... ...+.|.+|+.+. ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 4555555556677665 667899999998777653 2222111 1121 12334433321 2478899998773 335
Q ss_pred CCeeEEEEEeCcccc
Q 031185 80 DDKMGKAYLNLQPII 94 (164)
Q Consensus 80 d~~lG~~~i~l~~l~ 94 (164)
.+.+.++++.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 667888888766554
No 167
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=50.62 E-value=1.1e+02 Score=23.89 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=55.5
Q ss_pred EEEEEEEEeecCCCCC-------CCCCCcEEEEEECCEEEEeeeeeCCCCCeEec-eEE-EEeeCCC----------ceE
Q 031185 7 QLKVTVVQGKRLVIRD-------FKSSDPYVVLKLGNQMAKTKVINSCLNPVWNE-EHS-LSLTEPV----------GVL 67 (164)
Q Consensus 7 ~L~v~i~~a~~L~~~~-------~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w~e-~~~-f~~~~~~----------~~L 67 (164)
.|.|++..|.||...- .+...-|...++-+....|.......+|.+.- .-. +.+.... ..|
T Consensus 193 vLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L 272 (340)
T PF12416_consen 193 VLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKL 272 (340)
T ss_pred EEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCe
Confidence 4677888888876552 12245566677777777788777777786652 223 5544321 155
Q ss_pred EEEEEEcCCCCCCCeeEEEEEeCcccccce
Q 031185 68 SLEVFDKDRFKADDKMGKAYLNLQPIISAA 97 (164)
Q Consensus 68 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 97 (164)
.|.++. .+..||.+.+++..+....
T Consensus 273 ~I~Lc~-----g~~~Lg~~~v~l~~Ll~~~ 297 (340)
T PF12416_consen 273 QIHLCC-----GNQSLGSTSVPLQPLLPKD 297 (340)
T ss_pred EEEEee-----CCcEEEEEEEEhhhccCCC
Confidence 566655 3567999999999887553
No 168
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=50.23 E-value=35 Score=20.23 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=20.9
Q ss_pred ceEEEEEEEcCCCCCCCeeEEEEEeC
Q 031185 65 GVLSLEVFDKDRFKADDKMGKAYLNL 90 (164)
Q Consensus 65 ~~L~v~v~d~~~~~~d~~lG~~~i~l 90 (164)
....|++|+.+.+..|++|+.+..+-
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~Td~ 37 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKTDS 37 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEECC
Confidence 35679999999877899999877643
No 169
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.95 E-value=1.3e+02 Score=20.82 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.5
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEeCcc
Q 031185 66 VLSLEVFDKDRFKADDKMGKAYLNLQP 92 (164)
Q Consensus 66 ~L~v~v~d~~~~~~d~~lG~~~i~l~~ 92 (164)
.|.+.||..+.+++|-..|-.-+.+.-
T Consensus 84 qivl~vfg~d~~G~d~v~GYg~~hiP~ 110 (187)
T KOG4027|consen 84 QIVLNVFGKDHSGKDCVTGYGMLHIPT 110 (187)
T ss_pred eEEEEEecCCcCCcceeeeeeeEecCc
Confidence 899999999999999999888777653
No 170
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=36.32 E-value=1.1e+02 Score=19.35 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=21.1
Q ss_pred eEEEEEEEcCC---CCCCCeeEEEEEeCcccccc
Q 031185 66 VLSLEVFDKDR---FKADDKMGKAYLNLQPIISA 96 (164)
Q Consensus 66 ~L~v~v~d~~~---~~~d~~lG~~~i~l~~l~~~ 96 (164)
.|++.+++-.. .....++|.+.+++.+....
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~ 63 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNR 63 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHH
Confidence 56666655432 33567999999999877543
No 171
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=31.43 E-value=37 Score=19.99 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEEEcCCCCCCCeeEEEEEeCcc
Q 031185 66 VLSLEVFDKDRFKADDKMGKAYLNLQP 92 (164)
Q Consensus 66 ~L~v~v~d~~~~~~d~~lG~~~i~l~~ 92 (164)
.+.+-+||.+.+..+.-+|-..+++++
T Consensus 34 KidvPv~d~~WIE~Hr~LGL~vvPv~~ 60 (78)
T PF10622_consen 34 KIDVPVYDEEWIEEHRKLGLIVVPVSE 60 (78)
T ss_pred EeeccccCHHHHHHHHhCCeEEEeccc
Confidence 556677888888888889998888764
No 172
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=22.47 E-value=77 Score=20.51 Aligned_cols=14 Identities=7% Similarity=0.527 Sum_probs=11.6
Q ss_pred eeeeEEE--EEEEEeC
Q 031185 148 ESGEIEL--KVKIVDA 161 (164)
Q Consensus 148 ~~G~v~~--~l~~~~~ 161 (164)
.+|+|++ .|+|.|-
T Consensus 80 ~kGK~ri~~~leF~pd 95 (114)
T PF08872_consen 80 QKGKVRIKVSLEFIPD 95 (114)
T ss_pred ccceEEEEEEEEEecC
Confidence 5799998 9999874
Done!