Query 031186
Match_columns 164
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 10:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 98.6 1.6E-08 3.5E-13 76.8 1.5 76 68-163 20-99 (111)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.4 1.7E-07 3.6E-12 63.3 3.0 52 92-160 1-66 (66)
3 COG0484 DnaJ DnaJ-class molecu 98.3 2.6E-07 5.6E-12 82.0 2.2 57 88-163 141-210 (371)
4 PRK14282 chaperone protein Dna 98.2 7E-07 1.5E-11 76.3 3.2 57 89-162 152-221 (369)
5 PRK14298 chaperone protein Dna 98.2 8.4E-07 1.8E-11 76.5 2.9 57 89-162 141-210 (377)
6 PRK14278 chaperone protein Dna 98.2 1.1E-06 2.3E-11 75.8 2.8 57 89-162 139-208 (378)
7 PRK14280 chaperone protein Dna 98.2 1.2E-06 2.7E-11 75.1 3.0 57 89-162 143-212 (376)
8 PRK14276 chaperone protein Dna 98.1 1.3E-06 2.9E-11 75.0 2.8 57 89-162 146-215 (380)
9 PRK14289 chaperone protein Dna 98.1 1.5E-06 3.2E-11 74.5 3.0 57 89-162 154-223 (386)
10 PRK14297 chaperone protein Dna 98.1 2E-06 4.4E-11 73.8 3.1 57 89-162 148-217 (380)
11 PRK14287 chaperone protein Dna 98.1 1.8E-06 3.9E-11 74.2 2.8 57 89-162 138-207 (371)
12 PRK10767 chaperone protein Dna 98.1 2.7E-06 5.8E-11 72.5 3.2 53 89-162 142-207 (371)
13 PRK14293 chaperone protein Dna 98.1 2.8E-06 6E-11 72.8 3.1 57 89-162 143-212 (374)
14 TIGR02349 DnaJ_bact chaperone 98.0 4.1E-06 8.9E-11 70.7 3.6 57 89-162 143-212 (354)
15 PRK14286 chaperone protein Dna 98.0 3.5E-06 7.6E-11 72.4 2.8 53 89-162 150-215 (372)
16 PRK14296 chaperone protein Dna 98.0 3.6E-06 7.8E-11 72.5 2.8 57 89-162 149-218 (372)
17 PRK14277 chaperone protein Dna 98.0 4E-06 8.6E-11 72.3 3.0 57 89-162 155-224 (386)
18 PRK14281 chaperone protein Dna 98.0 4.3E-06 9.2E-11 72.5 3.1 57 89-162 163-231 (397)
19 COG1107 Archaea-specific RecJ- 98.0 4.5E-06 9.8E-11 79.4 3.4 65 89-163 2-81 (715)
20 PRK14301 chaperone protein Dna 98.0 4.5E-06 9.7E-11 71.8 3.0 53 89-162 144-209 (373)
21 PRK14300 chaperone protein Dna 98.0 4.7E-06 1E-10 71.5 3.1 53 89-162 145-210 (372)
22 PRK14284 chaperone protein Dna 98.0 4.6E-06 9.9E-11 72.0 2.9 53 89-162 158-223 (391)
23 PRK14288 chaperone protein Dna 98.0 5.2E-06 1.1E-10 71.3 3.1 52 90-162 141-204 (369)
24 PRK14285 chaperone protein Dna 97.9 7.2E-06 1.6E-10 70.4 3.6 53 89-162 146-211 (365)
25 PRK14279 chaperone protein Dna 97.9 5.9E-06 1.3E-10 71.6 3.0 53 89-162 173-238 (392)
26 PRK14283 chaperone protein Dna 97.9 6.2E-06 1.3E-10 70.8 2.9 57 89-162 146-215 (378)
27 PRK14294 chaperone protein Dna 97.9 6.9E-06 1.5E-10 70.2 3.1 53 89-162 144-209 (366)
28 PRK14295 chaperone protein Dna 97.9 9.1E-06 2E-10 70.4 3.0 53 89-162 166-231 (389)
29 PRK14291 chaperone protein Dna 97.7 2.7E-05 5.9E-10 67.1 3.2 53 89-162 156-220 (382)
30 PRK14292 chaperone protein Dna 97.6 3.4E-05 7.4E-10 65.8 2.8 56 90-162 140-209 (371)
31 PRK14290 chaperone protein Dna 97.6 3.6E-05 7.8E-10 65.8 2.7 55 89-162 149-217 (365)
32 PTZ00037 DnaJ_C chaperone prot 97.5 8.5E-05 1.8E-09 65.8 3.0 56 89-162 150-220 (421)
33 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.5 0.0022 4.8E-08 43.3 2.7 27 85-111 11-54 (66)
34 TIGR02642 phage_xxxx uncharact 96.4 0.0022 4.7E-08 52.5 2.4 25 89-113 99-130 (186)
35 TIGR02642 phage_xxxx uncharact 95.7 0.0061 1.3E-07 50.0 2.0 15 98-112 99-113 (186)
36 PRK14285 chaperone protein Dna 95.5 0.0088 1.9E-07 51.6 2.4 25 88-112 162-199 (365)
37 PRK14300 chaperone protein Dna 95.5 0.0089 1.9E-07 51.6 2.2 26 88-113 161-199 (372)
38 PRK14284 chaperone protein Dna 95.2 0.011 2.4E-07 51.3 1.9 25 88-112 174-211 (391)
39 PRK14282 chaperone protein Dna 95.2 0.015 3.2E-07 50.1 2.6 25 88-112 168-209 (369)
40 PRK10767 chaperone protein Dna 95.1 0.013 2.9E-07 50.2 2.2 24 89-112 159-195 (371)
41 PRK14293 chaperone protein Dna 95.1 0.017 3.6E-07 49.8 2.7 25 88-112 159-200 (374)
42 PRK14278 chaperone protein Dna 95.0 0.015 3.4E-07 50.3 2.4 25 88-112 155-196 (378)
43 PRK14288 chaperone protein Dna 95.0 0.019 4E-07 49.7 2.8 25 88-112 155-192 (369)
44 TIGR02349 DnaJ_bact chaperone 94.9 0.017 3.7E-07 49.0 2.3 25 88-112 159-200 (354)
45 PTZ00037 DnaJ_C chaperone prot 94.8 0.021 4.5E-07 50.9 2.7 25 88-112 165-206 (421)
46 PRK14296 chaperone protein Dna 94.8 0.022 4.7E-07 49.5 2.7 24 89-112 166-206 (372)
47 PRK14290 chaperone protein Dna 94.8 0.024 5.1E-07 48.8 2.8 25 88-112 164-205 (365)
48 PRK14276 chaperone protein Dna 94.7 0.018 3.8E-07 49.9 2.0 25 88-112 162-203 (380)
49 PRK14281 chaperone protein Dna 94.7 0.023 5.1E-07 49.5 2.6 25 88-112 178-219 (397)
50 PRK14295 chaperone protein Dna 94.6 0.022 4.7E-07 49.7 2.3 24 89-112 183-219 (389)
51 PRK14301 chaperone protein Dna 94.5 0.023 4.9E-07 49.3 2.1 24 89-112 161-197 (373)
52 PRK14277 chaperone protein Dna 94.5 0.022 4.8E-07 49.4 2.0 25 88-112 171-212 (386)
53 PRK14286 chaperone protein Dna 94.5 0.023 5.1E-07 49.1 2.2 24 89-112 167-203 (372)
54 PRK14294 chaperone protein Dna 94.5 0.024 5.1E-07 48.8 2.2 25 88-112 160-197 (366)
55 PRK14279 chaperone protein Dna 94.4 0.025 5.5E-07 49.4 2.2 25 88-112 189-226 (392)
56 PRK14297 chaperone protein Dna 93.4 0.049 1.1E-06 47.1 2.1 24 89-112 165-205 (380)
57 PLN03165 chaperone protein dna 93.4 0.05 1.1E-06 41.6 1.8 29 86-114 72-102 (111)
58 PRK14287 chaperone protein Dna 93.2 0.054 1.2E-06 46.9 2.0 37 100-162 140-193 (371)
59 PRK14283 chaperone protein Dna 93.2 0.065 1.4E-06 46.4 2.4 25 88-112 162-203 (378)
60 PRK14292 chaperone protein Dna 93.1 0.089 1.9E-06 45.2 3.2 24 88-111 156-196 (371)
61 COG0484 DnaJ DnaJ-class molecu 93.0 0.055 1.2E-06 48.6 1.9 24 90-113 184-212 (371)
62 KOG2813 Predicted molecular ch 92.3 0.1 2.2E-06 47.8 2.6 20 89-108 187-208 (406)
63 TIGR00630 uvra excinuclease AB 91.8 0.12 2.5E-06 50.7 2.5 36 98-153 736-771 (924)
64 PRK14298 chaperone protein Dna 91.5 0.12 2.7E-06 44.9 2.1 24 89-112 184-212 (377)
65 PRK00349 uvrA excinuclease ABC 91.3 0.13 2.8E-06 50.4 2.3 35 98-152 738-772 (943)
66 PRK14280 chaperone protein Dna 91.0 0.16 3.4E-06 44.1 2.3 22 91-112 188-214 (376)
67 KOG0712 Molecular chaperone (D 90.5 0.13 2.8E-06 45.9 1.3 71 66-163 114-199 (337)
68 PRK14289 chaperone protein Dna 90.2 0.19 4.1E-06 43.5 2.1 25 89-113 197-226 (386)
69 COG1656 Uncharacterized conser 89.4 0.23 5E-06 40.8 1.9 41 99-149 98-138 (165)
70 PRK14291 chaperone protein Dna 89.2 0.26 5.6E-06 42.8 2.2 22 91-112 197-222 (382)
71 PRK05580 primosome assembly pr 86.5 0.69 1.5E-05 43.1 3.4 48 87-159 379-430 (679)
72 KOG2813 Predicted molecular ch 84.5 0.69 1.5E-05 42.6 2.3 18 89-106 198-225 (406)
73 PF14369 zf-RING_3: zinc-finge 82.7 0.66 1.4E-05 29.0 1.0 12 100-112 23-34 (35)
74 PRK00635 excinuclease ABC subu 82.6 0.95 2.1E-05 47.8 2.7 33 99-151 1608-1640(1809)
75 TIGR00595 priA primosomal prot 81.6 1.5 3.3E-05 39.6 3.3 48 87-159 211-262 (505)
76 KOG0712 Molecular chaperone (D 80.2 0.81 1.8E-05 40.9 1.1 29 85-113 166-201 (337)
77 KOG0715 Molecular chaperone (D 78.8 0.92 2E-05 38.7 0.9 24 89-112 164-195 (288)
78 COG1107 Archaea-specific RecJ- 75.9 1.4 3.1E-05 43.0 1.5 24 89-112 53-82 (715)
79 PRK04023 DNA polymerase II lar 75.7 3 6.4E-05 42.8 3.6 50 80-159 617-672 (1121)
80 TIGR00630 uvra excinuclease AB 74.7 1.4 3.1E-05 43.3 1.1 24 89-112 736-773 (924)
81 PF13240 zinc_ribbon_2: zinc-r 74.2 1.5 3.3E-05 25.2 0.7 16 143-158 1-21 (23)
82 PF10571 UPF0547: Uncharacteri 74.1 2.1 4.5E-05 25.5 1.3 17 142-158 1-22 (26)
83 PF07092 DUF1356: Protein of u 72.9 2.2 4.7E-05 36.8 1.7 32 85-116 23-56 (238)
84 KOG2824 Glutaredoxin-related p 71.4 5.2 0.00011 35.5 3.7 51 86-157 226-280 (281)
85 COG2023 RPR2 RNase P subunit R 71.1 3.5 7.5E-05 31.9 2.3 33 117-149 30-64 (105)
86 PF03589 Antiterm: Antitermina 71.1 2.4 5.3E-05 31.3 1.4 11 98-108 5-15 (95)
87 COG1198 PriA Primosomal protei 70.6 3.9 8.5E-05 39.8 3.0 48 87-159 433-484 (730)
88 KOG2824 Glutaredoxin-related p 69.6 4.9 0.00011 35.7 3.1 21 90-111 222-242 (281)
89 cd03031 GRX_GRX_like Glutaredo 67.6 3.6 7.8E-05 32.2 1.7 26 87-112 97-124 (147)
90 PRK14873 primosome assembly pr 65.8 5.6 0.00012 37.8 2.9 48 87-159 381-431 (665)
91 TIGR01562 FdhE formate dehydro 65.7 14 0.00031 32.4 5.2 26 139-164 208-238 (305)
92 PRK14559 putative protein seri 65.6 5.5 0.00012 38.0 2.9 9 149-157 40-48 (645)
93 PF09297 zf-NADH-PPase: NADH p 65.6 3 6.5E-05 24.8 0.8 18 141-158 3-29 (32)
94 COG2871 NqrF Na+-transporting 64.9 8.9 0.00019 35.5 3.9 46 60-105 10-82 (410)
95 PRK11032 hypothetical protein; 63.0 3.8 8.3E-05 33.2 1.1 34 83-116 118-160 (160)
96 cd03031 GRX_GRX_like Glutaredo 62.9 4.1 8.9E-05 31.9 1.3 27 85-111 106-146 (147)
97 PF13248 zf-ribbon_3: zinc-rib 61.8 3.9 8.4E-05 23.6 0.7 17 142-158 3-24 (26)
98 PRK12496 hypothetical protein; 61.2 4.6 0.0001 31.9 1.3 22 138-159 123-152 (164)
99 PF01927 Mut7-C: Mut7-C RNAse 61.2 4.5 9.7E-05 30.8 1.2 40 99-148 92-131 (147)
100 PRK00349 uvrA excinuclease ABC 61.1 4 8.7E-05 40.4 1.1 24 89-112 738-775 (943)
101 TIGR03830 CxxCG_CxxCG_HTH puta 60.9 9.6 0.00021 27.0 2.8 22 100-122 33-54 (127)
102 TIGR02538 type_IV_pilB type IV 59.9 5.9 0.00013 36.3 1.9 10 100-109 490-499 (564)
103 PF12301 CD99L2: CD99 antigen 59.7 9.6 0.00021 31.1 2.9 21 60-80 121-141 (169)
104 PRK00635 excinuclease ABC subu 59.4 4.8 0.0001 42.8 1.4 25 88-112 1606-1644(1809)
105 PF07295 DUF1451: Protein of u 59.2 5.1 0.00011 31.7 1.2 35 80-114 103-146 (146)
106 PF09526 DUF2387: Probable met 58.6 4.6 0.0001 28.8 0.8 25 130-159 2-39 (71)
107 PF08792 A2L_zn_ribbon: A2L zi 57.3 5.9 0.00013 24.6 1.0 12 89-100 3-14 (33)
108 PF13453 zf-TFIIB: Transcripti 56.6 5.9 0.00013 24.6 0.9 16 143-158 1-27 (41)
109 PF14803 Nudix_N_2: Nudix N-te 56.4 5.4 0.00012 25.0 0.7 9 142-150 1-9 (34)
110 TIGR03655 anti_R_Lar restricti 55.6 16 0.00035 23.7 2.9 22 89-110 1-38 (53)
111 PRK14714 DNA polymerase II lar 55.3 9.5 0.00021 39.9 2.7 28 80-107 658-688 (1337)
112 PF11859 DUF3379: Protein of u 55.2 2.8 6E-05 35.9 -0.9 111 16-148 45-159 (232)
113 PF07589 VPEP: PEP-CTERM motif 54.4 18 0.0004 21.2 2.7 20 53-72 1-20 (25)
114 KOG1812 Predicted E3 ubiquitin 54.2 10 0.00022 33.8 2.3 61 84-150 253-315 (384)
115 PRK03954 ribonuclease P protei 54.1 14 0.0003 28.9 2.8 34 117-150 38-73 (121)
116 TIGR00354 polC DNA polymerase, 53.6 13 0.00029 38.2 3.3 46 88-135 1011-1063(1095)
117 PRK14715 DNA polymerase II lar 53.1 14 0.0003 39.4 3.4 45 88-135 1541-1592(1627)
118 PF12669 P12: Virus attachment 53.0 18 0.00039 24.6 2.9 12 90-101 28-39 (58)
119 PF08271 TF_Zn_Ribbon: TFIIB z 52.1 7 0.00015 24.4 0.8 20 91-113 2-31 (43)
120 PRK06921 hypothetical protein; 51.6 8.5 0.00018 31.9 1.4 13 100-112 34-46 (266)
121 PF09723 Zn-ribbon_8: Zinc rib 51.4 15 0.00033 23.1 2.2 9 98-106 26-34 (42)
122 PF14353 CpXC: CpXC protein 51.4 16 0.00035 26.7 2.7 15 150-164 38-52 (128)
123 PRK00432 30S ribosomal protein 50.9 8.8 0.00019 25.5 1.1 18 141-158 20-45 (50)
124 PRK14714 DNA polymerase II lar 50.7 16 0.00035 38.3 3.4 46 88-135 1252-1304(1337)
125 PRK12380 hydrogenase nickel in 50.7 8.4 0.00018 28.7 1.1 20 141-160 70-96 (113)
126 COG2804 PulE Type II secretory 50.0 15 0.00032 34.7 2.9 35 63-109 381-435 (500)
127 PF08273 Prim_Zn_Ribbon: Zinc- 50.0 6.5 0.00014 25.5 0.4 10 90-99 4-13 (40)
128 PRK00488 pheS phenylalanyl-tRN 47.9 9.9 0.00021 33.9 1.3 20 91-111 262-281 (339)
129 PF06906 DUF1272: Protein of u 47.2 4.3 9.2E-05 28.8 -0.8 18 142-159 30-50 (57)
130 TIGR02443 conserved hypothetic 46.5 9.5 0.0002 27.1 0.8 25 130-159 3-40 (59)
131 PF05957 DUF883: Bacterial pro 46.1 21 0.00046 25.0 2.5 19 60-79 76-94 (94)
132 PF04216 FdhE: Protein involve 45.0 9.4 0.0002 31.8 0.7 23 140-162 196-223 (290)
133 PRK04023 DNA polymerase II lar 45.0 23 0.0005 36.7 3.5 46 88-135 1036-1088(1121)
134 PF03833 PolC_DP2: DNA polymer 44.8 7.2 0.00016 39.3 0.0 48 82-159 648-701 (900)
135 PF12773 DZR: Double zinc ribb 44.7 13 0.00027 23.2 1.1 22 137-158 8-37 (50)
136 PRK00488 pheS phenylalanyl-tRN 44.5 9.8 0.00021 34.0 0.8 20 143-163 262-281 (339)
137 PF07282 OrfB_Zn_ribbon: Putat 44.4 22 0.00048 23.3 2.3 34 88-132 27-69 (69)
138 COG0178 UvrA Excinuclease ATPa 44.3 11 0.00024 38.2 1.1 27 86-112 727-767 (935)
139 PF04032 Rpr2: RNAse P Rpr2/Rp 44.1 32 0.0007 23.1 3.1 36 114-149 17-54 (85)
140 PRK00762 hypA hydrogenase nick 43.1 16 0.00034 27.7 1.6 26 85-111 66-105 (124)
141 PF10814 DUF2562: Protein of u 43.0 6.2 0.00013 32.0 -0.6 26 58-83 94-119 (133)
142 COG0178 UvrA Excinuclease ATPa 41.9 21 0.00045 36.3 2.6 33 99-151 731-763 (935)
143 PRK10132 hypothetical protein; 41.6 28 0.0006 26.4 2.7 20 60-80 89-108 (108)
144 PF08274 PhnA_Zn_Ribbon: PhnA 39.7 8.9 0.00019 23.6 -0.2 18 90-107 3-28 (30)
145 PRK10220 hypothetical protein; 39.6 18 0.00038 28.5 1.4 20 88-107 2-29 (111)
146 PRK13130 H/ACA RNA-protein com 38.4 17 0.00037 25.1 1.1 23 88-110 4-29 (56)
147 TIGR02538 type_IV_pilB type IV 37.8 20 0.00043 33.0 1.7 12 149-160 487-498 (564)
148 TIGR02533 type_II_gspE general 37.6 16 0.00034 33.3 1.0 20 100-119 414-438 (486)
149 TIGR01167 LPXTG_anchor LPXTG-m 37.4 34 0.00073 19.7 2.1 14 66-79 19-32 (34)
150 PF01155 HypA: Hydrogenase exp 37.3 16 0.00034 27.1 0.8 28 85-112 66-100 (113)
151 PLN02999 photosystem II oxygen 37.2 24 0.00052 30.0 1.9 24 107-130 77-101 (190)
152 PRK06835 DNA replication prote 36.8 15 0.00033 31.8 0.7 15 44-58 25-39 (329)
153 CHL00174 accD acetyl-CoA carbo 36.0 26 0.00056 30.9 2.0 32 132-163 28-70 (296)
154 smart00661 RPOL9 RNA polymeras 35.2 23 0.0005 21.9 1.2 8 151-158 21-28 (52)
155 TIGR00757 RNaseEG ribonuclease 35.2 18 0.00039 32.6 1.0 13 100-112 392-404 (414)
156 PHA02739 hypothetical protein; 34.4 18 0.00039 28.5 0.7 19 139-157 91-115 (116)
157 TIGR00686 phnA alkylphosphonat 33.9 23 0.00049 27.8 1.2 19 89-107 2-28 (109)
158 PF09369 DUF1998: Domain of un 33.6 40 0.00086 23.0 2.3 37 106-156 47-83 (84)
159 PRK11712 ribonuclease G; Provi 33.2 39 0.00085 31.4 2.8 13 100-112 404-416 (489)
160 PF14570 zf-RING_4: RING/Ubox 33.0 12 0.00027 25.2 -0.3 18 89-106 22-45 (48)
161 PF07754 DUF1610: Domain of un 32.8 23 0.0005 21.1 0.9 8 150-157 16-23 (24)
162 COG5349 Uncharacterized protei 32.7 18 0.00038 29.1 0.4 13 99-112 22-34 (126)
163 PF01102 Glycophorin_A: Glycop 31.9 48 0.001 25.9 2.7 14 60-73 70-83 (122)
164 PF08996 zf-DNA_Pol: DNA Polym 31.6 39 0.00084 26.9 2.2 52 100-163 47-112 (188)
165 PRK03681 hypA hydrogenase nick 31.5 25 0.00054 26.3 1.1 21 140-160 69-97 (114)
166 smart00440 ZnF_C2C2 C2C2 Zinc 31.3 41 0.00088 21.2 1.9 35 100-149 2-36 (40)
167 PRK00564 hypA hydrogenase nick 31.2 33 0.00073 25.7 1.7 28 85-112 67-102 (117)
168 PTZ00382 Variant-specific surf 30.8 17 0.00037 26.8 0.1 21 60-80 75-95 (96)
169 COG1530 CafA Ribonucleases G a 30.4 20 0.00044 32.9 0.5 14 100-113 397-410 (487)
170 PTZ00166 DNA polymerase delta 30.0 46 0.001 33.4 2.9 52 89-150 960-1015(1054)
171 PF03833 PolC_DP2: DNA polymer 29.8 17 0.00038 36.7 0.0 19 141-159 667-689 (900)
172 PTZ00368 universal minicircle 29.6 88 0.0019 23.4 3.7 9 104-112 33-41 (148)
173 PF13901 DUF4206: Domain of un 29.3 32 0.00069 27.8 1.4 21 91-111 144-165 (202)
174 COG1933 Archaeal DNA polymeras 29.2 52 0.0011 29.1 2.8 45 89-135 167-218 (253)
175 smart00291 ZnF_ZZ Zinc-binding 28.8 19 0.00042 22.6 0.1 22 89-110 18-39 (44)
176 PRK12286 rpmF 50S ribosomal pr 28.7 33 0.00071 23.5 1.2 19 140-158 26-48 (57)
177 cd04272 ZnMc_salivary_gland_MP 28.6 53 0.0011 25.9 2.5 21 91-113 169-189 (220)
178 TIGR02605 CxxC_CxxC_SSSS putat 28.3 43 0.00093 21.0 1.6 7 100-106 28-34 (52)
179 COG1545 Predicted nucleic-acid 28.2 30 0.00064 26.7 1.0 20 142-161 30-54 (140)
180 KOG1768 40s ribosomal protein 28.2 15 0.00032 29.2 -0.7 57 86-148 17-78 (115)
181 KOG0715 Molecular chaperone (D 27.9 32 0.00069 29.5 1.2 35 79-113 171-218 (288)
182 KOG3799 Rab3 effector RIM1 and 27.8 22 0.00048 29.6 0.3 28 131-162 74-101 (169)
183 TIGR00373 conserved hypothetic 27.5 78 0.0017 24.8 3.3 52 107-159 71-137 (158)
184 PRK06266 transcription initiat 27.4 74 0.0016 25.6 3.1 41 119-159 95-145 (178)
185 PF15171 Spexin: Neuropeptide 27.4 26 0.00057 26.8 0.6 23 66-88 54-76 (90)
186 COG3058 FdhE Uncharacterized p 27.1 32 0.00069 31.2 1.1 14 151-164 226-239 (308)
187 KOG1311 DHHC-type Zn-finger pr 26.9 28 0.00062 28.7 0.7 24 134-157 106-134 (299)
188 PF12732 YtxH: YtxH-like prote 26.6 56 0.0012 22.2 2.1 23 61-83 4-26 (74)
189 TIGR00100 hypA hydrogenase nic 26.5 49 0.0011 24.7 1.9 28 85-112 66-100 (115)
190 PF09855 DUF2082: Nucleic-acid 26.4 37 0.0008 23.9 1.1 7 151-157 37-43 (64)
191 PF15474 MU117: Meiotically up 26.2 32 0.0007 25.7 0.9 10 94-103 3-12 (97)
192 PRK06418 transcription elongat 26.1 21 0.00046 29.0 -0.1 23 90-112 4-30 (166)
193 PRK03564 formate dehydrogenase 25.2 41 0.00088 29.8 1.4 25 140-164 211-240 (309)
194 PRK00398 rpoP DNA-directed RNA 24.7 43 0.00092 21.0 1.1 8 151-158 22-29 (46)
195 PRK14892 putative transcriptio 24.7 30 0.00064 26.1 0.4 29 129-158 10-50 (99)
196 smart00105 ArfGap Putative GTP 24.2 21 0.00045 26.2 -0.5 18 89-106 3-31 (112)
197 PF10399 UCR_Fe-S_N: Ubiquitin 24.1 1.2E+02 0.0027 19.6 3.2 20 58-77 18-37 (41)
198 PRK10404 hypothetical protein; 23.4 82 0.0018 23.5 2.6 18 60-78 83-100 (101)
199 PF14319 Zn_Tnp_IS91: Transpos 22.8 83 0.0018 23.4 2.5 32 128-159 29-69 (111)
200 PLN02593 adrenodoxin-like ferr 22.6 39 0.00084 25.2 0.7 25 94-118 37-64 (117)
201 smart00261 FU Furin-like repea 22.3 54 0.0012 19.8 1.2 22 90-112 9-32 (46)
202 CHL00104 rpl33 ribosomal prote 22.2 48 0.0011 23.6 1.1 10 139-148 47-56 (66)
203 TIGR01031 rpmF_bact ribosomal 21.9 51 0.0011 22.3 1.1 19 140-158 25-47 (55)
204 PF12898 Stc1: Stc1 domain; I 21.7 1.5E+02 0.0031 21.2 3.5 34 123-157 20-57 (84)
205 PRK00504 rpmG 50S ribosomal pr 21.6 50 0.0011 22.3 1.0 33 101-149 10-42 (50)
206 COG5041 SKB2 Casein kinase II, 21.5 54 0.0012 28.9 1.4 34 98-148 121-156 (242)
207 PF00471 Ribosomal_L33: Riboso 21.4 40 0.00087 22.4 0.5 32 101-148 8-39 (48)
208 smart00834 CxxC_CXXC_SSSS Puta 21.3 94 0.002 18.2 2.1 8 100-107 28-35 (41)
209 PRK00241 nudC NADH pyrophospha 21.2 52 0.0011 27.5 1.3 21 139-159 97-126 (256)
210 TIGR02007 fdx_isc ferredoxin, 21.1 44 0.00096 24.3 0.7 12 94-105 40-51 (110)
211 COG5082 AIR1 Arginine methyltr 21.0 81 0.0018 26.6 2.3 61 32-112 23-92 (190)
212 PF14354 Lar_restr_allev: Rest 20.8 1.6E+02 0.0035 18.8 3.3 9 88-96 2-10 (61)
213 COG0267 RpmG Ribosomal protein 20.7 49 0.0011 22.6 0.8 33 100-148 9-41 (50)
214 PF00098 zf-CCHC: Zinc knuckle 20.6 59 0.0013 17.6 1.0 13 151-163 1-13 (18)
215 PRK14759 potassium-transportin 20.5 1.6E+02 0.0035 18.5 3.0 24 56-79 4-27 (29)
216 COG3813 Uncharacterized protei 20.4 35 0.00075 25.9 0.0 27 91-118 31-60 (84)
217 PF02083 Urotensin_II: Urotens 20.3 36 0.00077 17.9 0.1 6 140-145 7-12 (12)
218 PF08260 Kinin: Insect kinin p 20.1 42 0.00092 16.0 0.3 8 30-37 1-8 (8)
219 PF02988 PLA2_inh: Phospholipa 20.1 56 0.0012 24.1 1.1 14 91-106 2-15 (83)
220 PF12172 DUF35_N: Rubredoxin-l 20.0 44 0.00094 20.0 0.4 18 142-159 12-34 (37)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.59 E-value=1.6e-08 Score=76.83 Aligned_cols=76 Identities=29% Similarity=0.616 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCccccccccccccCCCCC--CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCcccccc
Q 031186 68 VGAAATLLVRRTKGSEETEIPLKTCEDCGGSG--ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCT 145 (164)
Q Consensus 68 VGaA~t~L~rr~k~~e~~e~~~~~Ce~C~GSG--iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~ 145 (164)
||--+++|+--+-.-++..+....|..|.|+| .|+.|+|.|++...+ .|..+-...|+
T Consensus 20 ~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--------------------~g~~q~~~~C~ 79 (111)
T PLN03165 20 VGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--------------------GGGEKEVSKCI 79 (111)
T ss_pred hccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--------------------CCcEEEEEECC
Confidence 34445555544433445677889999999999 799999999998742 23345677899
Q ss_pred CCCCC--ccccccCCccccc
Q 031186 146 KCSSS--RSCATCGGRGKLS 163 (164)
Q Consensus 146 kCS~~--r~C~~CgG~G~ls 163 (164)
.|.+. ..|.+|.|+|...
T Consensus 80 ~C~G~Gk~~C~~C~G~G~~~ 99 (111)
T PLN03165 80 NCDGAGSLTCTTCQGSGIQP 99 (111)
T ss_pred CCCCcceeeCCCCCCCEEEe
Confidence 99887 4799999998753
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.43 E-value=1.7e-07 Score=63.33 Aligned_cols=52 Identities=37% Similarity=0.992 Sum_probs=40.4
Q ss_pred cccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC------ccccccC
Q 031186 92 CEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS------RSCATCG 157 (164)
Q Consensus 92 Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~------r~C~~Cg 157 (164)
|+.|.|+|. ||.|+|.|+|+.. +|-..|..+....|++|.+. ..|.+|.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~ 63 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRR-----------------QQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCK 63 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEE-----------------EESSSTTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEE-----------------EeCCCeEEEEEEECCCCcceeeEECCCCCCCCC
Confidence 889999995 9999999999995 45566777888899999876 5799999
Q ss_pred Ccc
Q 031186 158 GRG 160 (164)
Q Consensus 158 G~G 160 (164)
|+|
T Consensus 64 G~g 66 (66)
T PF00684_consen 64 GSG 66 (66)
T ss_dssp TSS
T ss_pred CcC
Confidence 886
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-07 Score=81.95 Aligned_cols=57 Identities=35% Similarity=0.845 Sum_probs=49.6
Q ss_pred cccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccc
Q 031186 88 PLKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCA 154 (164)
Q Consensus 88 ~~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~ 154 (164)
....|+.|.||| .||.|+|.|.|... |.+ |.-.-+..|++|.|+ ..|.
T Consensus 141 ~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~------------------~~~-g~~~~~~~C~~C~G~G~~i~~pC~ 201 (371)
T COG0484 141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTV------------------QRT-GFFSFQQTCPTCNGTGKIIKDPCG 201 (371)
T ss_pred eeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEE------------------Eee-eEEEEEEECCCCccceeECCCCCC
Confidence 347899999997 59999999999983 334 999999999999998 5999
Q ss_pred ccCCccccc
Q 031186 155 TCGGRGKLS 163 (164)
Q Consensus 155 ~CgG~G~ls 163 (164)
+|.|.|.+.
T Consensus 202 ~C~G~G~v~ 210 (371)
T COG0484 202 KCKGKGRVK 210 (371)
T ss_pred CCCCCCeEe
Confidence 999999863
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.24 E-value=7e-07 Score=76.31 Aligned_cols=57 Identities=35% Similarity=0.942 Sum_probs=48.9
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+| .|+.|+|.|+|... +|.-.|+-+....|++|.|. ..|.+
T Consensus 152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 214 (369)
T PRK14282 152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREE-----------------RRSFFGVFVSERTCERCGGTGKIPGEYCHE 214 (369)
T ss_pred cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEE-----------------EEccCcceEEEEECCCCCCcceeCCCCCCC
Confidence 35799999998 49999999999874 56667888889999999997 47999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 215 C~G~g~v 221 (369)
T PRK14282 215 CGGSGRI 221 (369)
T ss_pred CCCceeE
Confidence 9999965
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.20 E-value=8.4e-07 Score=76.48 Aligned_cols=57 Identities=32% Similarity=0.809 Sum_probs=48.4
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+|. |+.|+|.|.|... +|.-.|.-+-+..|++|.|. ..|..
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 203 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTT-----------------RSTPLGQFVTTTTCSTCHGRGQVIESPCPV 203 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEE-----------------EecCceeEEEEEeCCCCCCCCcccCCCCCC
Confidence 467999999984 9999999999985 44455677889999999998 67999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 204 C~G~g~v 210 (377)
T PRK14298 204 CSGTGKV 210 (377)
T ss_pred CCCccEE
Confidence 9999975
No 6
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.17 E-value=1.1e-06 Score=75.75 Aligned_cols=57 Identities=30% Similarity=0.706 Sum_probs=48.5
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+| .|+.|+|.|.|... ++.-.|..+....|++|.|. ..|..
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 201 (378)
T PRK14278 139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV-----------------QRSFLGQVMTSRPCPTCRGVGEVIPDPCHE 201 (378)
T ss_pred eccCCCCcCccCCCCCCceecCCccCceEEEEE-----------------EeccceeEEEEEECCCCCccceeeCCCCCC
Confidence 36799999998 49999999999884 44556777788899999998 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 202 C~G~g~v 208 (378)
T PRK14278 202 CAGDGRV 208 (378)
T ss_pred CCCceeE
Confidence 9999975
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.16 E-value=1.2e-06 Score=75.13 Aligned_cols=57 Identities=35% Similarity=0.826 Sum_probs=47.2
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|++|.|+| .|+.|+|.|+|... ++--.|+-+....|++|.|. ..|..
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVE-----------------QNTPFGRVVNRQTCPHCNGTGQEIKEKCPT 205 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEE-----------------eecCCceEEEEEEcCCCCCCCceecCCCCC
Confidence 36799999998 49999999999874 33345666678899999998 67999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 206 C~G~g~v 212 (376)
T PRK14280 206 CHGKGKV 212 (376)
T ss_pred CCCceEE
Confidence 9999975
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.14 E-value=1.3e-06 Score=75.00 Aligned_cols=57 Identities=33% Similarity=0.827 Sum_probs=48.2
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+| .|+.|+|.|.|... +|.-.|.-+....|++|.|. ..|..
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 208 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVD-----------------TQTPLGMMRRQVTCDVCHGTGKEIKEPCQT 208 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEE-----------------EecCCceEEEEEECCCCCCCCccccCCCCC
Confidence 46799999998 49999999999874 45556777778999999997 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 209 C~G~g~~ 215 (380)
T PRK14276 209 CHGTGHE 215 (380)
T ss_pred CCCceEE
Confidence 9999975
No 9
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.14 E-value=1.5e-06 Score=74.55 Aligned_cols=57 Identities=35% Similarity=0.881 Sum_probs=48.4
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+|. |+.|+|.|+++.. +|.-.|+-+....|++|.|. ..|..
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 216 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRV-----------------QNTILGTMQTQSTCPTCNGEGKIIKKKCKK 216 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEE-----------------EecccceEEEEEecCCCCccccccCcCCCC
Confidence 478999999994 9999999999884 44445777789999999988 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|+|+|.+
T Consensus 217 C~G~g~v 223 (386)
T PRK14289 217 CGGEGIV 223 (386)
T ss_pred CCCCcEE
Confidence 9999975
No 10
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.10 E-value=2e-06 Score=73.77 Aligned_cols=57 Identities=33% Similarity=0.802 Sum_probs=47.9
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+|. |+.|+|.|+|+.. ++-..|+-+....|++|.|. ..|.+
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 210 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQ-----------------RNTPLGSFVSTTTCDKCGGSGKVIEDPCNK 210 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEE-----------------EEcCCceeEEEEeCCCCCCCceEcCCCCCC
Confidence 357999999984 9999999999874 44456777888999999998 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 211 C~G~g~v 217 (380)
T PRK14297 211 CHGKGKV 217 (380)
T ss_pred CCCCeEE
Confidence 9999954
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=1.8e-06 Score=74.16 Aligned_cols=57 Identities=37% Similarity=0.852 Sum_probs=47.3
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|++|.|+| .|+.|+|.|+|... +|.-.|.-+....|++|.+. ..|..
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 200 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVE-----------------QNTPFGRVVNRRVCHHCEGTGKIIKQKCAT 200 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEE-----------------EecCCceEEEEEeCCCCCCCCccccccCCC
Confidence 35799999998 49999999999874 45555776678899999988 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|+|.|.+
T Consensus 201 C~G~g~v 207 (371)
T PRK14287 201 CGGKGKV 207 (371)
T ss_pred CCCeeEE
Confidence 9999865
No 12
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=2.7e-06 Score=72.52 Aligned_cols=53 Identities=38% Similarity=0.949 Sum_probs=44.5
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+| .|+.|+|.|.|+.. + |.-+-...|++|.|. ..|..
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------------------~---g~~~~~~~C~~C~G~G~~~~~~C~~ 200 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQ------------------Q---GFFTVQQTCPTCHGRGKIIKDPCKK 200 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEe------------------e---ceEEEEEeCCCCCCceeECCCCCCC
Confidence 46799999998 59999999998863 1 555667899999998 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 201 C~G~g~v 207 (371)
T PRK10767 201 CHGQGRV 207 (371)
T ss_pred CCCCceE
Confidence 9999975
No 13
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.06 E-value=2.8e-06 Score=72.80 Aligned_cols=57 Identities=42% Similarity=0.897 Sum_probs=48.6
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+|. |+.|+|.|.|++. +|.-.|+-+.+..|.+|.|. ..|..
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRA-----------------TRTPFGSFTQVSECPTCNGTGQVIEDPCDA 205 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEE-----------------EecCcceEEEEeeCCCCCcceeEeccCCCC
Confidence 468999999884 9999999999874 56666777778999999988 58999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 206 C~G~g~v 212 (374)
T PRK14293 206 CGGQGVK 212 (374)
T ss_pred CCCCccc
Confidence 9999975
No 14
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.03 E-value=4.1e-06 Score=70.66 Aligned_cols=57 Identities=33% Similarity=0.902 Sum_probs=48.7
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+| .|+.|+|.|+|+.. ++...|+-+....|.+|.|. ..|..
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 205 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ-----------------QGTPFGFFQQQQTCPTCGGEGKIIKEPCST 205 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEE-----------------EeccCCceEEEEecCCCCCcceecCCCCCC
Confidence 46799999998 49999999999984 45567777788999999998 46999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 206 C~G~g~v 212 (354)
T TIGR02349 206 CKGKGRV 212 (354)
T ss_pred CCCCcEe
Confidence 9999975
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.00 E-value=3.5e-06 Score=72.43 Aligned_cols=53 Identities=40% Similarity=0.999 Sum_probs=45.2
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|++|.|+| .|+.|+|.|.|+... |+-+-+..|++|.|. ..|..
T Consensus 150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~ 208 (372)
T PRK14286 150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ---------------------GFFSVATTCPTCRGKGTVISNPCKT 208 (372)
T ss_pred cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe---------------------ceEEEEEeCCCCCceeeEecccCCC
Confidence 36799999998 499999999998741 555678899999998 68999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 209 C~G~g~~ 215 (372)
T PRK14286 209 CGGQGLQ 215 (372)
T ss_pred CCCCcEE
Confidence 9999975
No 16
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.00 E-value=3.6e-06 Score=72.53 Aligned_cols=57 Identities=33% Similarity=0.750 Sum_probs=45.2
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+|. |+.|+|.|.|+.. ++.-.+.-+-...|++|.|. ..|..
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~ 211 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQ-----------------KNMGFFQFQQSAKCNVCNGAGKIIKNKCKN 211 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEE-----------------EeccceEEEEEecCCCcCCcceeecccccC
Confidence 367999999994 9999999999884 22222333667899999988 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 212 C~G~g~v 218 (372)
T PRK14296 212 CKGKGKY 218 (372)
T ss_pred CCCceEE
Confidence 9999965
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.00 E-value=4e-06 Score=72.28 Aligned_cols=57 Identities=33% Similarity=0.881 Sum_probs=47.6
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+|. |+.|+|.|.|... ++--.|+-+....|++|.|. ..|..
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~ 217 (386)
T PRK14277 155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTR-----------------QNTPFGRIVNIRTCDRCHGEGKIITDPCNK 217 (386)
T ss_pred eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEE-----------------EeccCceEEEEEECCCCCcceeeccCCCCC
Confidence 367999999884 9999999999874 44445777777899999998 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 218 C~G~g~v 224 (386)
T PRK14277 218 CGGTGRI 224 (386)
T ss_pred CCCCcEE
Confidence 9999976
No 18
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.99 E-value=4.3e-06 Score=72.48 Aligned_cols=57 Identities=30% Similarity=0.761 Sum_probs=47.9
Q ss_pred ccccccCCCCCC-------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccccc
Q 031186 89 LKTCEDCGGSGI-------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCATC 156 (164)
Q Consensus 89 ~~~Ce~C~GSGi-------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~C 156 (164)
...|..|.|+|. |+.|+|.|+|... +|--.|.-+....|++|.|. ..|..|
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 225 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQA-----------------SKTMFGQFVNITACPTCGGEGRVVKDRCPAC 225 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEE-----------------EecccceEEEEEecCCCcceeeeeCCCCCCC
Confidence 357999999984 9999999999773 45556777778899999998 579999
Q ss_pred CCcccc
Q 031186 157 GGRGKL 162 (164)
Q Consensus 157 gG~G~l 162 (164)
.|.|.+
T Consensus 226 ~G~g~v 231 (397)
T PRK14281 226 YGEGIK 231 (397)
T ss_pred CCCccE
Confidence 999976
No 19
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.98 E-value=4.5e-06 Score=79.37 Aligned_cols=65 Identities=38% Similarity=0.877 Sum_probs=47.3
Q ss_pred ccccccCCCCC-------CCCCccCcceeeeccCHHH-HHHHHHHhhhhhhhhhcCCCCc-cccccCCCCC------ccc
Q 031186 89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEET-AERARLTAKNMATRYTAGLPKK-WSYCTKCSSS------RSC 153 (164)
Q Consensus 89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~-A~kAr~~AKnmAtRytaGlpkk-wsyC~kCS~~------r~C 153 (164)
.+.|.+|+|.| .||-|.|.||+ +++++.- +.-+| -+.-+--+ --.|++|-+. ..|
T Consensus 2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~-~~~d~k~~~~~~~---------~~~D~~~~~~~pc~~c~gkG~V~v~~~c 71 (715)
T COG1107 2 IKKCPECGGKGKIVVGEEECPVCHGTGFS-DDFDPKGVANLSR---------ETVDLFASFEIPCPKCRGKGTVTVYDTC 71 (715)
T ss_pred CccccccCCCceEeeeeeecccccccccc-cccChhhhhhhhh---------ccccccccCCCCCCeeccceeEEEEeec
Confidence 57899999999 49999999999 8887711 21122 22222222 3479999987 889
Q ss_pred cccCCccccc
Q 031186 154 ATCGGRGKLS 163 (164)
Q Consensus 154 ~~CgG~G~ls 163 (164)
++|||.|++.
T Consensus 72 ~~c~G~gkv~ 81 (715)
T COG1107 72 PECGGTGKVL 81 (715)
T ss_pred ccCCCceeEE
Confidence 9999999863
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=4.5e-06 Score=71.81 Aligned_cols=53 Identities=38% Similarity=0.862 Sum_probs=44.9
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+|. |+.|+|.|.|.... |+-+.+..|++|.|. ..|..
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~ 202 (373)
T PRK14301 144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---------------------GFFQIAVPCPVCRGEGRVITHPCPK 202 (373)
T ss_pred cccCCCCCCcccCCCCCCcccCCccCeeEEEEEe---------------------eeEEEEEeCCCCCceeeecCCCCCC
Confidence 367999999983 99999999998741 555679999999988 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 203 C~G~g~v 209 (373)
T PRK14301 203 CKGSGIV 209 (373)
T ss_pred CCCCcee
Confidence 9999975
No 21
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=4.7e-06 Score=71.52 Aligned_cols=53 Identities=32% Similarity=0.772 Sum_probs=44.3
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+|. ||.|+|.|+++.. .|.-+.-..|++|.|. ..|.+
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~---------------------~g~~~~~~~C~~C~G~G~~~~~~C~~ 203 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQ---------------------QGFFTIEQACHKCQGNGQIIKNPCKK 203 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEe---------------------eceEEEEEeCCCCCccceEeCCCCCC
Confidence 368999999984 9999999999863 1555566789999988 68999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 204 C~G~g~v 210 (372)
T PRK14300 204 CHGMGRY 210 (372)
T ss_pred CCCceEE
Confidence 9999986
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.97 E-value=4.6e-06 Score=72.02 Aligned_cols=53 Identities=38% Similarity=0.976 Sum_probs=45.0
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+|. |+.|+|.|.|.... |+-+-...|++|.|. ..|..
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~ 216 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR---------------------GFFSMASTCPECGGEGRVITDPCSV 216 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEe---------------------ceEEEEEECCCCCCCCcccCCcCCC
Confidence 468999999984 99999999998741 666677899999998 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 217 C~G~g~v 223 (391)
T PRK14284 217 CRGQGRI 223 (391)
T ss_pred CCCccee
Confidence 9999975
No 23
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.96 E-value=5.2e-06 Score=71.31 Aligned_cols=52 Identities=31% Similarity=0.865 Sum_probs=44.0
Q ss_pred cccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccccC
Q 031186 90 KTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCATCG 157 (164)
Q Consensus 90 ~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~Cg 157 (164)
..|+.|.|+| .|+.|+|.|.|.... |..+-...|++|.|. ..|..|.
T Consensus 141 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~---------------------g~~~~~~~C~~C~G~G~~~~~~C~~C~ 199 (369)
T PRK14288 141 SVCESCDGTGAKDKALETCKQCNGQGQVFMRQ---------------------GFMSFAQTCGACQGKGKIIKTPCQACK 199 (369)
T ss_pred ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe---------------------ceEEEEEecCCCCCCceEccccCccCC
Confidence 4899999998 499999999987631 556777899999998 5799999
Q ss_pred Ccccc
Q 031186 158 GRGKL 162 (164)
Q Consensus 158 G~G~l 162 (164)
|.|.+
T Consensus 200 G~g~v 204 (369)
T PRK14288 200 GKTYI 204 (369)
T ss_pred CcceE
Confidence 99875
No 24
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.94 E-value=7.2e-06 Score=70.36 Aligned_cols=53 Identities=36% Similarity=0.856 Sum_probs=44.7
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+| .|+.|+|.|.|+.. .|+-+-...|++|.|. ..|.+
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~---------------------~G~~~~~~~C~~C~G~G~~~~~~C~~ 204 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG---------------------GGFFRVTTTCPKCYGNGKIISNPCKS 204 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEec---------------------CceeEEeeecCCCCCcccccCCCCCC
Confidence 46899999998 49999999998751 2666778999999998 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 205 C~G~g~v 211 (365)
T PRK14285 205 CKGKGSL 211 (365)
T ss_pred CCCCCEE
Confidence 9999965
No 25
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.93 E-value=5.9e-06 Score=71.63 Aligned_cols=53 Identities=34% Similarity=0.829 Sum_probs=44.6
Q ss_pred ccccccCCCCCC--------CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+|. |+.|+|.|+|.... |..+-...|++|.|. ..|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------------------g~~~~~~~C~~C~G~G~~i~~~C~~ 231 (392)
T PRK14279 173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ---------------------GAFGFSEPCTDCRGTGSIIEDPCEE 231 (392)
T ss_pred cccCCCCccccccCCCCCCCCCCCcceEEEEEEe---------------------cceEEEEecCCCCceeEEeCCcCCC
Confidence 468999999994 99999999998731 455567999999998 68999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 232 C~G~g~v 238 (392)
T PRK14279 232 CKGTGVT 238 (392)
T ss_pred CCCCeEE
Confidence 9999975
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.93 E-value=6.2e-06 Score=70.77 Aligned_cols=57 Identities=32% Similarity=0.774 Sum_probs=46.3
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|++|.|+| .|+.|+|.|.|++. ++...|.-+.-..|++|.|. ..|..
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 208 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQV-----------------RNTILGQMMNVTTCPDCQGEGKIVEKPCSN 208 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEE-----------------EeccCceEEEEEECCCCCccceecCCCCCC
Confidence 36899999987 49999999999874 34445665566799999998 58999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 209 C~G~g~v 215 (378)
T PRK14283 209 CHGKGVV 215 (378)
T ss_pred CCCceee
Confidence 9999975
No 27
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.92 E-value=6.9e-06 Score=70.22 Aligned_cols=53 Identities=42% Similarity=1.024 Sum_probs=44.7
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|..|.|+| .|+.|+|.|.+.... |+-+-+..|++|.|. ..|..
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------------------G~~~~~~~C~~C~G~G~~~~~~C~~ 202 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ---------------------GFFSIRTTCPRCRGMGKVIVSPCKT 202 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEe---------------------eeEEEEeeCCCCCCcCeecCcCCCC
Confidence 46799999998 599999999998642 455678999999998 58999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 203 C~G~g~v 209 (366)
T PRK14294 203 CHGQGRV 209 (366)
T ss_pred CCCceEe
Confidence 9999975
No 28
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.87 E-value=9.1e-06 Score=70.42 Aligned_cols=53 Identities=32% Similarity=0.828 Sum_probs=44.2
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
...|+.|.|+| .|+.|+|.|.|+... |..+....|++|.|. ..|..
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---------------------g~~~~~~~C~~C~G~G~~~~~~C~~ 224 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS---------------------GGFSLSEPCPDCKGRGLIADDPCLV 224 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe---------------------cceEEEEecCCCcceeEEeccCCCC
Confidence 46799999998 499999999998741 444567899999998 57999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|.|.+
T Consensus 225 C~G~g~~ 231 (389)
T PRK14295 225 CKGSGRA 231 (389)
T ss_pred CCCCceE
Confidence 9999975
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.70 E-value=2.7e-05 Score=67.08 Aligned_cols=53 Identities=36% Similarity=1.027 Sum_probs=44.3
Q ss_pred ccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC----cccccc
Q 031186 89 LKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATC 156 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~C 156 (164)
...|..|.|+| .||.|+|.|+|... -|+-+-...|++|.|. ..|..|
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~---------------------~g~~~~~~~C~~C~G~G~~~~~C~~C 214 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR---------------------GGFFRISQTCPTCGGEGVLREPCSKC 214 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEe---------------------cceEEEEecCCCCCCceEEccCCCCC
Confidence 46799999998 49999999999874 1445567899999998 489999
Q ss_pred CCcccc
Q 031186 157 GGRGKL 162 (164)
Q Consensus 157 gG~G~l 162 (164)
.|.|.+
T Consensus 215 ~G~g~v 220 (382)
T PRK14291 215 NGRGLV 220 (382)
T ss_pred CCCceE
Confidence 999975
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.63 E-value=3.4e-05 Score=65.82 Aligned_cols=56 Identities=36% Similarity=0.878 Sum_probs=45.4
Q ss_pred cccccCCCCC---------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----ccccc
Q 031186 90 KTCEDCGGSG---------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCAT 155 (164)
Q Consensus 90 ~~Ce~C~GSG---------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~~ 155 (164)
..|+.|.|+| .|+.|+|.|.+... +|-..|.-+.-..|++|.|. ..|..
T Consensus 140 ~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~-----------------~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 202 (371)
T PRK14292 140 TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQ-----------------ARTIFGVVETQQPCPTCRGEGQIITDPCTV 202 (371)
T ss_pred ecCCCCcccccCCCCCCCccCCCCCCccEEEEE-----------------EeccCceEEEeeecCCCcccceecCCCCCC
Confidence 5799999988 49999999999875 23334665556789999997 58999
Q ss_pred cCCcccc
Q 031186 156 CGGRGKL 162 (164)
Q Consensus 156 CgG~G~l 162 (164)
|.|+|.+
T Consensus 203 C~G~g~v 209 (371)
T PRK14292 203 CRGRGRT 209 (371)
T ss_pred CCCceEE
Confidence 9999965
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.62 E-value=3.6e-05 Score=65.84 Aligned_cols=55 Identities=33% Similarity=0.835 Sum_probs=43.0
Q ss_pred ccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCC--CccccccCCCCC-----cccc
Q 031186 89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLP--KKWSYCTKCSSS-----RSCA 154 (164)
Q Consensus 89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlp--kkwsyC~kCS~~-----r~C~ 154 (164)
...|..|.|+| .||.|+|.|.+... + ..|+- +.-..|++|.|. ..|.
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~------------------~-~~g~~~~~~~~~C~~C~G~G~~~~~~C~ 209 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIV------------------R-GQGFFRMVTVTTCRTCGGRGRIPEEKCP 209 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEE------------------e-ccCeEEEEEEEeCCCCCCceeEccCCCC
Confidence 36799999999 49999999988763 1 23442 234689999987 5899
Q ss_pred ccCCcccc
Q 031186 155 TCGGRGKL 162 (164)
Q Consensus 155 ~CgG~G~l 162 (164)
.|.|+|.+
T Consensus 210 ~C~G~g~v 217 (365)
T PRK14290 210 RCNGTGTV 217 (365)
T ss_pred CCCCceeE
Confidence 99999975
No 32
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.46 E-value=8.5e-05 Score=65.81 Aligned_cols=56 Identities=29% Similarity=0.777 Sum_probs=42.1
Q ss_pred ccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcC-CCCccccccCCCCC-------ccc
Q 031186 89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG-LPKKWSYCTKCSSS-------RSC 153 (164)
Q Consensus 89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaG-lpkkwsyC~kCS~~-------r~C 153 (164)
...|..|.|+| .|+.|+|.|.+... |.... .-+--..|+.|.|. ..|
T Consensus 150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~------------------~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C 211 (421)
T PTZ00037 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQI------------------RQMGSMIHQTQSTCNSCNGQGKIIPESKKC 211 (421)
T ss_pred cccccccCCCCCCCCCCccCCCCCCCCeEEEE------------------EeecceeeEEEEeCCCCCCcceeccccccC
Confidence 36799999999 49999999987663 11111 12345689999987 469
Q ss_pred cccCCcccc
Q 031186 154 ATCGGRGKL 162 (164)
Q Consensus 154 ~~CgG~G~l 162 (164)
..|.|.|.+
T Consensus 212 ~~C~G~g~v 220 (421)
T PTZ00037 212 KNCSGKGVK 220 (421)
T ss_pred CcCCCccee
Confidence 999999975
No 33
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.53 E-value=0.0022 Score=43.27 Aligned_cols=27 Identities=44% Similarity=1.032 Sum_probs=19.8
Q ss_pred ccccccccccCCCCCC-----------------CCCccCcceee
Q 031186 85 TEIPLKTCEDCGGSGI-----------------CPECKGEGFVL 111 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSGi-----------------CpeC~GeGFV~ 111 (164)
+......|..|+|+|. ||.|+|.|++.
T Consensus 11 ~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 11 PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 3456679999999993 99999999997
No 34
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.40 E-value=0.0022 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.840 Sum_probs=18.8
Q ss_pred ccccccCCCCCC-------CCCccCcceeeec
Q 031186 89 LKTCEDCGGSGI-------CPECKGEGFVLKK 113 (164)
Q Consensus 89 ~~~Ce~C~GSGi-------CpeC~GeGFV~k~ 113 (164)
...|+.|+|+|. |++|+|.|+|.+.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 567888888872 8888888887764
No 35
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.71 E-value=0.0061 Score=49.97 Aligned_cols=15 Identities=40% Similarity=1.134 Sum_probs=10.9
Q ss_pred CCCCCCccCcceeee
Q 031186 98 SGICPECKGEGFVLK 112 (164)
Q Consensus 98 SGiCpeC~GeGFV~k 112 (164)
+-.||+|+|.|++.+
T Consensus 99 ~~~C~~C~G~G~~i~ 113 (186)
T TIGR02642 99 SCKCPRCRGTGLIQR 113 (186)
T ss_pred CCcCCCCCCeeEEec
Confidence 456777877777765
No 36
>PRK14285 chaperone protein DnaJ; Provisional
Probab=95.53 E-value=0.0088 Score=51.61 Aligned_cols=25 Identities=40% Similarity=1.068 Sum_probs=21.0
Q ss_pred cccccccCCCCC-------------CCCCccCcceeee
Q 031186 88 PLKTCEDCGGSG-------------ICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSG-------------iCpeC~GeGFV~k 112 (164)
..+.|..|+|+| .||.|+|.|++.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~ 199 (365)
T PRK14285 162 SPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS 199 (365)
T ss_pred CCccCCCccCceeEEecCceeEEeeecCCCCCcccccC
Confidence 356899999998 4999999998865
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.46 E-value=0.0089 Score=51.59 Aligned_cols=26 Identities=38% Similarity=1.123 Sum_probs=21.1
Q ss_pred cccccccCCCCCC-------------CCCccCcceeeec
Q 031186 88 PLKTCEDCGGSGI-------------CPECKGEGFVLKK 113 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-------------CpeC~GeGFV~k~ 113 (164)
....|..|+|+|. |+.|+|.|++.++
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~ 199 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKN 199 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCC
Confidence 3568999999983 9999999988763
No 38
>PRK14284 chaperone protein DnaJ; Provisional
Probab=95.17 E-value=0.011 Score=51.32 Aligned_cols=25 Identities=56% Similarity=1.268 Sum_probs=20.8
Q ss_pred cccccccCCCCCC-------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-------------CpeC~GeGFV~k 112 (164)
..+.|..|+|+|. ||.|+|.|++.+
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 211 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT 211 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC
Confidence 4578999999985 999999998765
No 39
>PRK14282 chaperone protein DnaJ; Provisional
Probab=95.15 E-value=0.015 Score=50.06 Aligned_cols=25 Identities=36% Similarity=0.858 Sum_probs=20.0
Q ss_pred cccccccCCCCCC-----------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k 112 (164)
..+.|..|+|+|. |+.|+|.|++.+
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 209 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG 209 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC
Confidence 4578999999973 899999998764
No 40
>PRK10767 chaperone protein DnaJ; Provisional
Probab=95.12 E-value=0.013 Score=50.15 Aligned_cols=24 Identities=50% Similarity=1.212 Sum_probs=20.1
Q ss_pred ccccccCCCCCC-------------CCCccCcceeee
Q 031186 89 LKTCEDCGGSGI-------------CPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSGi-------------CpeC~GeGFV~k 112 (164)
.+.|..|+|+|. |+.|+|.|++.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 195 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK 195 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC
Confidence 468999999984 999999998765
No 41
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.07 E-value=0.017 Score=49.84 Aligned_cols=25 Identities=48% Similarity=1.200 Sum_probs=20.5
Q ss_pred cccccccCCCCCC-----------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k 112 (164)
....|..|.|+|+ |+.|+|.|++.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 200 (374)
T PRK14293 159 GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE 200 (374)
T ss_pred CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec
Confidence 4567999999984 999999998866
No 42
>PRK14278 chaperone protein DnaJ; Provisional
Probab=95.04 E-value=0.015 Score=50.34 Aligned_cols=25 Identities=48% Similarity=1.155 Sum_probs=19.9
Q ss_pred cccccccCCCCCC-----------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k 112 (164)
....|..|.|+|. |+.|+|.|++.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 196 (378)
T PRK14278 155 KPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP 196 (378)
T ss_pred CceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC
Confidence 3467999999873 999999998765
No 43
>PRK14288 chaperone protein DnaJ; Provisional
Probab=94.99 E-value=0.019 Score=49.71 Aligned_cols=25 Identities=44% Similarity=1.173 Sum_probs=21.5
Q ss_pred cccccccCCCCCC-------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-------------CpeC~GeGFV~k 112 (164)
..+.|..|+|+|. ||.|+|.|++.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 192 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK 192 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc
Confidence 5688999999994 999999998865
No 44
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=94.90 E-value=0.017 Score=48.97 Aligned_cols=25 Identities=56% Similarity=1.303 Sum_probs=20.9
Q ss_pred cccccccCCCCC-----------------CCCCccCcceeee
Q 031186 88 PLKTCEDCGGSG-----------------ICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~k 112 (164)
..+.|..|+|+| .|+.|+|.|++.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 200 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK 200 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC
Confidence 367899999987 4999999998865
No 45
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=94.84 E-value=0.021 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.986 Sum_probs=21.4
Q ss_pred cccccccCCCCC-----------------CCCCccCcceeee
Q 031186 88 PLKTCEDCGGSG-----------------ICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~k 112 (164)
....|..|+|+| .|+.|+|.|++.+
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~ 206 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP 206 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence 457899999999 4999999999876
No 46
>PRK14296 chaperone protein DnaJ; Provisional
Probab=94.80 E-value=0.022 Score=49.46 Aligned_cols=24 Identities=38% Similarity=1.111 Sum_probs=18.7
Q ss_pred ccccccCCCCC-----------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG-----------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG-----------------iCpeC~GeGFV~k 112 (164)
...|..|+|+| .|+.|+|.|++.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~ 206 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK 206 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec
Confidence 46788888887 4888888888765
No 47
>PRK14290 chaperone protein DnaJ; Provisional
Probab=94.75 E-value=0.024 Score=48.81 Aligned_cols=25 Identities=40% Similarity=0.963 Sum_probs=20.5
Q ss_pred cccccccCCCCC-----------------CCCCccCcceeee
Q 031186 88 PLKTCEDCGGSG-----------------ICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~k 112 (164)
....|..|+|+| .|+.|+|.|++.+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~ 205 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE 205 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc
Confidence 457899999988 4999999998854
No 48
>PRK14276 chaperone protein DnaJ; Provisional
Probab=94.74 E-value=0.018 Score=49.93 Aligned_cols=25 Identities=44% Similarity=0.981 Sum_probs=18.6
Q ss_pred cccccccCCCCCC-----------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k 112 (164)
..+.|..|+|+|. |+.|+|.|++.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 203 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK 203 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc
Confidence 3467888888762 888888887765
No 49
>PRK14281 chaperone protein DnaJ; Provisional
Probab=94.68 E-value=0.023 Score=49.54 Aligned_cols=25 Identities=56% Similarity=1.171 Sum_probs=20.7
Q ss_pred cccccccCCCCCC-----------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k 112 (164)
..+.|..|+|+|. |+.|+|.|++.+
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 219 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK 219 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC
Confidence 4578999999883 999999998866
No 50
>PRK14295 chaperone protein DnaJ; Provisional
Probab=94.64 E-value=0.022 Score=49.75 Aligned_cols=24 Identities=42% Similarity=1.257 Sum_probs=20.0
Q ss_pred ccccccCCCCCC-------------CCCccCcceeee
Q 031186 89 LKTCEDCGGSGI-------------CPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSGi-------------CpeC~GeGFV~k 112 (164)
.+.|..|+|+|. |+.|+|.|++.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 219 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD 219 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec
Confidence 478999999873 999999998866
No 51
>PRK14301 chaperone protein DnaJ; Provisional
Probab=94.52 E-value=0.023 Score=49.27 Aligned_cols=24 Identities=58% Similarity=1.330 Sum_probs=19.3
Q ss_pred ccccccCCCCC-------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG-------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k 112 (164)
...|..|+|+| .|+.|+|.|++.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 197 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT 197 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence 46799999987 3888888888765
No 52
>PRK14277 chaperone protein DnaJ; Provisional
Probab=94.52 E-value=0.022 Score=49.45 Aligned_cols=25 Identities=40% Similarity=0.955 Sum_probs=20.0
Q ss_pred cccccccCCCCCC-----------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k 112 (164)
....|..|+|+|+ |+.|+|.|++.+
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 212 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT 212 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc
Confidence 3567999999873 899999998865
No 53
>PRK14286 chaperone protein DnaJ; Provisional
Probab=94.51 E-value=0.023 Score=49.15 Aligned_cols=24 Identities=58% Similarity=1.395 Sum_probs=19.5
Q ss_pred ccccccCCCCC-------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG-------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k 112 (164)
.+.|..|+|+| .|+.|+|.|++.+
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 203 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS 203 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec
Confidence 46799999988 3888888888865
No 54
>PRK14294 chaperone protein DnaJ; Provisional
Probab=94.50 E-value=0.024 Score=48.81 Aligned_cols=25 Identities=52% Similarity=1.220 Sum_probs=19.6
Q ss_pred cccccccCCCCC-------------CCCCccCcceeee
Q 031186 88 PLKTCEDCGGSG-------------ICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSG-------------iCpeC~GeGFV~k 112 (164)
....|..|+|+| .|+.|+|.|++.+
T Consensus 160 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~ 197 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV 197 (366)
T ss_pred CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC
Confidence 356799999988 3999999888754
No 55
>PRK14279 chaperone protein DnaJ; Provisional
Probab=94.42 E-value=0.025 Score=49.36 Aligned_cols=25 Identities=40% Similarity=1.104 Sum_probs=20.7
Q ss_pred cccccccCCCCC-------------CCCCccCcceeee
Q 031186 88 PLKTCEDCGGSG-------------ICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSG-------------iCpeC~GeGFV~k 112 (164)
..+.|..|+|+| .|+.|+|.|++.+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~ 226 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE 226 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence 457899999998 3999999998866
No 56
>PRK14297 chaperone protein DnaJ; Provisional
Probab=93.43 E-value=0.049 Score=47.14 Aligned_cols=24 Identities=50% Similarity=1.251 Sum_probs=18.6
Q ss_pred ccccccCCCCC-----------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG-----------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG-----------------iCpeC~GeGFV~k 112 (164)
...|..|+|+| .|+.|+|.|++.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 205 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE 205 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence 56788888887 3888888887765
No 57
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=93.35 E-value=0.05 Score=41.64 Aligned_cols=29 Identities=34% Similarity=0.907 Sum_probs=24.9
Q ss_pred cccccccccCCCCC--CCCCccCcceeeecc
Q 031186 86 EIPLKTCEDCGGSG--ICPECKGEGFVLKKL 114 (164)
Q Consensus 86 e~~~~~Ce~C~GSG--iCpeC~GeGFV~k~l 114 (164)
......|..|.|+| +|+.|+|.|++-+-|
T Consensus 72 ~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~ 102 (111)
T PLN03165 72 EKEVSKCINCDGAGSLTCTTCQGSGIQPRYL 102 (111)
T ss_pred EEEEEECCCCCCcceeeCCCCCCCEEEeeee
Confidence 34577999999999 799999999998765
No 58
>PRK14287 chaperone protein DnaJ; Provisional
Probab=93.20 E-value=0.054 Score=46.91 Aligned_cols=37 Identities=38% Similarity=0.863 Sum_probs=28.8
Q ss_pred CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----------------ccccccCCcccc
Q 031186 100 ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----------------RSCATCGGRGKL 162 (164)
Q Consensus 100 iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----------------r~C~~CgG~G~l 162 (164)
+|+.|+|.|.-.. .+...|+.|.|+ ..|+.|+|.|++
T Consensus 140 ~C~~C~G~G~~~~--------------------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~ 193 (371)
T PRK14287 140 TCGTCHGSGAKPG--------------------------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI 193 (371)
T ss_pred cCCCCCCcccCCC--------------------------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc
Confidence 5999999996321 223559999987 479999999986
No 59
>PRK14283 chaperone protein DnaJ; Provisional
Probab=93.16 E-value=0.065 Score=46.36 Aligned_cols=25 Identities=52% Similarity=1.375 Sum_probs=19.3
Q ss_pred cccccccCCCCCC-----------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----------------CpeC~GeGFV~k 112 (164)
....|..|.|+|+ |+.|+|.|+..+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 203 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE 203 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC
Confidence 4567888888874 888888888754
No 60
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.12 E-value=0.089 Score=45.20 Aligned_cols=24 Identities=54% Similarity=1.352 Sum_probs=18.9
Q ss_pred cccccccCCCCC-----------------CCCCccCcceee
Q 031186 88 PLKTCEDCGGSG-----------------ICPECKGEGFVL 111 (164)
Q Consensus 88 ~~~~Ce~C~GSG-----------------iCpeC~GeGFV~ 111 (164)
....|..|+|+| .|+.|+|.|++.
T Consensus 156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 196 (371)
T PRK14292 156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII 196 (371)
T ss_pred CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence 457799999987 388888888864
No 61
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.055 Score=48.64 Aligned_cols=24 Identities=54% Similarity=1.161 Sum_probs=13.3
Q ss_pred cccccCCCCC-----CCCCccCcceeeec
Q 031186 90 KTCEDCGGSG-----ICPECKGEGFVLKK 113 (164)
Q Consensus 90 ~~Ce~C~GSG-----iCpeC~GeGFV~k~ 113 (164)
.+|..|+|+| .|+.|+|.|+|.++
T Consensus 184 ~~C~~C~G~G~~i~~pC~~C~G~G~v~~~ 212 (371)
T COG0484 184 QTCPTCNGTGKIIKDPCGKCKGKGRVKKK 212 (371)
T ss_pred EECCCCccceeECCCCCCCCCCCCeEeee
Confidence 3444444444 26666666666553
No 62
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.1 Score=47.79 Aligned_cols=20 Identities=40% Similarity=1.150 Sum_probs=16.1
Q ss_pred ccccccCCCCC--CCCCccCcc
Q 031186 89 LKTCEDCGGSG--ICPECKGEG 108 (164)
Q Consensus 89 ~~~Ce~C~GSG--iCpeC~GeG 108 (164)
-+.|-.|.|-| .||-|+|.|
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G 208 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSG 208 (406)
T ss_pred hhhhhcccCCCceeccCcCCCC
Confidence 35788888888 599998877
No 63
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.78 E-value=0.12 Score=50.67 Aligned_cols=36 Identities=31% Similarity=0.706 Sum_probs=27.7
Q ss_pred CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCccc
Q 031186 98 SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSC 153 (164)
Q Consensus 98 SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r~C 153 (164)
.|.||.|+|.|++.-. |+ =+|..|..|+.|.|.|--
T Consensus 736 ~G~C~~C~G~G~~~~~---------------~~-----f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 736 GGRCEACQGDGVIKIE---------------MH-----FLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCCccceEEEEE---------------cc-----CCCCcccCCCCcCCceeC
Confidence 3789999999999853 33 167778888888887653
No 64
>PRK14298 chaperone protein DnaJ; Provisional
Probab=91.47 E-value=0.12 Score=44.94 Aligned_cols=24 Identities=50% Similarity=1.061 Sum_probs=15.2
Q ss_pred ccccccCCCCC-----CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG-----ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG-----iCpeC~GeGFV~k 112 (164)
..+|..|.|.| .|+.|+|.|+|.+
T Consensus 184 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 212 (377)
T PRK14298 184 TTTCSTCHGRGQVIESPCPVCSGTGKVRK 212 (377)
T ss_pred EEeCCCCCCCCcccCCCCCCCCCccEEEE
Confidence 34566666666 2777777777765
No 65
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=91.30 E-value=0.13 Score=50.42 Aligned_cols=35 Identities=31% Similarity=0.744 Sum_probs=26.0
Q ss_pred CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCcc
Q 031186 98 SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRS 152 (164)
Q Consensus 98 SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r~ 152 (164)
-|.||.|+|.|+|.-+ |. =+|..|..|+.|.|.|-
T Consensus 738 ~G~C~~C~G~G~~~~~---------------~~-----f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 738 GGRCEACQGDGVIKIE---------------MH-----FLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCCcccccceEEEE---------------ec-----cCCCccccCccccCccc
Confidence 3789999999999964 32 15667777777777753
No 66
>PRK14280 chaperone protein DnaJ; Provisional
Probab=90.96 E-value=0.16 Score=44.08 Aligned_cols=22 Identities=55% Similarity=1.289 Sum_probs=14.0
Q ss_pred ccccCCCCCC-----CCCccCcceeee
Q 031186 91 TCEDCGGSGI-----CPECKGEGFVLK 112 (164)
Q Consensus 91 ~Ce~C~GSGi-----CpeC~GeGFV~k 112 (164)
.|..|.|.|. |+.|+|.|+|.+
T Consensus 188 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 214 (376)
T PRK14280 188 TCPHCNGTGQEIKEKCPTCHGKGKVRK 214 (376)
T ss_pred EcCCCCCCCceecCCCCCCCCceEEEE
Confidence 5555655552 777777777754
No 67
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=0.13 Score=45.90 Aligned_cols=71 Identities=28% Similarity=0.703 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCC
Q 031186 66 TVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLP 138 (164)
Q Consensus 66 ~vVGaA~t~L~rr~k~~e~~e~~~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlp 138 (164)
..+|....+.+.++ ..|+.|.|+| -|+.|+|.|.-..- +|.-.|.-
T Consensus 114 ~y~G~s~kl~l~~~----------~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~-----------------~~~gPg~~ 166 (337)
T KOG0712|consen 114 LYMGKSKKLFLSRN----------FICSKCSGSGGKSGSAPKCTTCRGSGVQTRT-----------------RQMGPGMV 166 (337)
T ss_pred hhcCCccceecccC----------ccCCcCCCCCCCCCCCCCCCCCCCCCceeEE-----------------Eecccccc
Confidence 34565555555555 6899999998 39999999976552 23223332
Q ss_pred -CccccccCCCCC--c-----cccccCCccccc
Q 031186 139 -KKWSYCTKCSSS--R-----SCATCGGRGKLS 163 (164)
Q Consensus 139 -kkwsyC~kCS~~--r-----~C~~CgG~G~ls 163 (164)
+-|.-|..|.+. . .|++|.|++.++
T Consensus 167 qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 167 QSPQLVCDSCNGSGETISLKDRCKTCSGAKVVR 199 (337)
T ss_pred ccceeEeccCCCccccccccccCcccccchhhh
Confidence 557789999887 3 799999998764
No 68
>PRK14289 chaperone protein DnaJ; Provisional
Probab=90.18 E-value=0.19 Score=43.51 Aligned_cols=25 Identities=44% Similarity=1.052 Sum_probs=17.2
Q ss_pred ccccccCCCCC-----CCCCccCcceeeec
Q 031186 89 LKTCEDCGGSG-----ICPECKGEGFVLKK 113 (164)
Q Consensus 89 ~~~Ce~C~GSG-----iCpeC~GeGFV~k~ 113 (164)
...|..|+|.| .|+.|+|.|+|.+.
T Consensus 197 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 226 (386)
T PRK14289 197 QSTCPTCNGEGKIIKKKCKKCGGEGIVYGE 226 (386)
T ss_pred EEecCCCCccccccCcCCCCCCCCcEEeee
Confidence 45677777777 37777777777653
No 69
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=89.44 E-value=0.23 Score=40.79 Aligned_cols=41 Identities=34% Similarity=0.656 Sum_probs=29.6
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS 149 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~ 149 (164)
..||+|||+ +.++|.|. +|+..-.++.+.-.++++|++|..
T Consensus 98 ~RCp~CN~~---L~~vs~ee-------v~~~Vp~~~~~~~~~f~~C~~Cgk 138 (165)
T COG1656 98 SRCPECNGE---LEKVSREE-------VKEKVPEKVYRNYEEFYRCPKCGK 138 (165)
T ss_pred ccCcccCCE---eccCcHHH-------HhhccchhhhhcccceeECCCCcc
Confidence 468899885 44454443 345567778888899999999964
No 70
>PRK14291 chaperone protein DnaJ; Provisional
Probab=89.20 E-value=0.26 Score=42.85 Aligned_cols=22 Identities=55% Similarity=1.404 Sum_probs=11.4
Q ss_pred ccccCCCCC----CCCCccCcceeee
Q 031186 91 TCEDCGGSG----ICPECKGEGFVLK 112 (164)
Q Consensus 91 ~Ce~C~GSG----iCpeC~GeGFV~k 112 (164)
.|..|+|.| .|+.|+|.|+|.+
T Consensus 197 ~C~~C~G~G~~~~~C~~C~G~g~v~~ 222 (382)
T PRK14291 197 TCPTCGGEGVLREPCSKCNGRGLVIK 222 (382)
T ss_pred cCCCCCCceEEccCCCCCCCCceEEe
Confidence 344444444 3666666666554
No 71
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.53 E-value=0.69 Score=43.14 Aligned_cols=48 Identities=29% Similarity=0.870 Sum_probs=36.0
Q ss_pred ccccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC----ccccccCCc
Q 031186 87 IPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATCGGR 159 (164)
Q Consensus 87 ~~~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~CgG~ 159 (164)
.+...|++|+-.-.||.|++ ..+..+ .+..-.|..|... ..|+.||+.
T Consensus 379 ~~~~~C~~Cg~~~~C~~C~~-~l~~h~------------------------~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 379 APFLLCRDCGWVAECPHCDA-SLTLHR------------------------FQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred CCceEhhhCcCccCCCCCCC-ceeEEC------------------------CCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 45678999999999999998 444332 1234568889876 579999886
No 72
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=0.69 Score=42.57 Aligned_cols=18 Identities=44% Similarity=1.147 Sum_probs=14.6
Q ss_pred ccccccCCCCC----------CCCCccC
Q 031186 89 LKTCEDCGGSG----------ICPECKG 106 (164)
Q Consensus 89 ~~~Ce~C~GSG----------iCpeC~G 106 (164)
...|..|+|+| -|+-|-|
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G 225 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTG 225 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccC
Confidence 56899999999 3888877
No 73
>PF14369 zf-RING_3: zinc-finger
Probab=82.73 E-value=0.66 Score=28.95 Aligned_cols=12 Identities=58% Similarity=1.464 Sum_probs=9.5
Q ss_pred CCCCccCcceeee
Q 031186 100 ICPECKGEGFVLK 112 (164)
Q Consensus 100 iCpeC~GeGFV~k 112 (164)
.||+|+| |||-+
T Consensus 23 ~CP~C~~-gFvEe 34 (35)
T PF14369_consen 23 ACPRCHG-GFVEE 34 (35)
T ss_pred CCcCCCC-cEeEe
Confidence 4999996 99853
No 74
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=82.59 E-value=0.95 Score=47.79 Aligned_cols=33 Identities=30% Similarity=0.554 Sum_probs=26.0
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR 151 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r 151 (164)
|-||.|+|.|++.-. |. =||..|..|..|.|.|
T Consensus 1608 GrC~~C~G~G~i~i~---------------m~-----fl~dv~~~C~~C~G~R 1640 (1809)
T PRK00635 1608 GQCSDCWGLGYQWID---------------RA-----FYALEKRPCPTCSGFR 1640 (1809)
T ss_pred CCCCCCccCceEEEe---------------cc-----cCCCcccCCCCCCCcC
Confidence 779999999998653 43 2888888888888876
No 75
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.57 E-value=1.5 Score=39.57 Aligned_cols=48 Identities=25% Similarity=0.635 Sum_probs=35.1
Q ss_pred ccccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC----ccccccCCc
Q 031186 87 IPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATCGGR 159 (164)
Q Consensus 87 ~~~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~CgG~ 159 (164)
.+.-.|.+|+-.-.||.|++. .+..+ -+..-.|..|... ..|++||+.
T Consensus 211 a~~~~C~~Cg~~~~C~~C~~~-l~~h~------------------------~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 211 SKNLLCRSCGYILCCPNCDVS-LTYHK------------------------KEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred CCeeEhhhCcCccCCCCCCCc-eEEec------------------------CCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 356789999999999999874 22221 1234579999877 569999875
No 76
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.17 E-value=0.81 Score=40.91 Aligned_cols=29 Identities=38% Similarity=0.885 Sum_probs=24.5
Q ss_pred ccccccccccCCCCC-------CCCCccCcceeeec
Q 031186 85 TEIPLKTCEDCGGSG-------ICPECKGEGFVLKK 113 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSG-------iCpeC~GeGFV~k~ 113 (164)
.+..+-.|.+|+|+| .|+.|+|.+|+..+
T Consensus 166 ~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~k 201 (337)
T KOG0712|consen 166 VQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREK 201 (337)
T ss_pred cccceeEeccCCCccccccccccCcccccchhhhhh
Confidence 467778899999998 49999999998763
No 77
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.80 E-value=0.92 Score=38.75 Aligned_cols=24 Identities=50% Similarity=1.113 Sum_probs=16.9
Q ss_pred ccccccCCCCCC--------CCCccCcceeee
Q 031186 89 LKTCEDCGGSGI--------CPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSGi--------CpeC~GeGFV~k 112 (164)
...|+.|.|+|. |.-|+|.|+++.
T Consensus 164 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (288)
T KOG0715|consen 164 LSDCETCFGSGAEEGAKRESCKTCSGRGLVSN 195 (288)
T ss_pred ecccccccCcCcccccccccchhhhCcccccc
Confidence 346777777773 777777776655
No 78
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=75.95 E-value=1.4 Score=43.02 Aligned_cols=24 Identities=50% Similarity=1.114 Sum_probs=21.1
Q ss_pred ccccccCCCCCC------CCCccCcceeee
Q 031186 89 LKTCEDCGGSGI------CPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSGi------CpeC~GeGFV~k 112 (164)
..+|+.|.|.|. ||+|.|.|.|++
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 348999999994 999999999987
No 79
>PRK04023 DNA polymerase II large subunit; Validated
Probab=75.71 E-value=3 Score=42.76 Aligned_cols=50 Identities=32% Similarity=0.779 Sum_probs=37.5
Q ss_pred CCCccccccccccccCCCCC---CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC---ccc
Q 031186 80 KGSEETEIPLKTCEDCGGSG---ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS---RSC 153 (164)
Q Consensus 80 k~~e~~e~~~~~Ce~C~GSG---iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~---r~C 153 (164)
++.-+.|+....|..|+-.+ .||+|... +..-..|++|... ..|
T Consensus 617 ~g~~eVEVg~RfCpsCG~~t~~frCP~CG~~------------------------------Te~i~fCP~CG~~~~~y~C 666 (1121)
T PRK04023 617 KGTIEVEIGRRKCPSCGKETFYRRCPFCGTH------------------------------TEPVYRCPRCGIEVEEDEC 666 (1121)
T ss_pred CCceeecccCccCCCCCCcCCcccCCCCCCC------------------------------CCcceeCccccCcCCCCcC
Confidence 66777899999999999664 69999876 1222478888654 459
Q ss_pred cccCCc
Q 031186 154 ATCGGR 159 (164)
Q Consensus 154 ~~CgG~ 159 (164)
+.||-.
T Consensus 667 PKCG~E 672 (1121)
T PRK04023 667 EKCGRE 672 (1121)
T ss_pred CCCCCC
Confidence 999865
No 80
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.68 E-value=1.4 Score=43.33 Aligned_cols=24 Identities=38% Similarity=0.877 Sum_probs=20.2
Q ss_pred ccccccCCCCC--------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG--------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG--------------iCpeC~GeGFV~k 112 (164)
.--|+.|.|.| .||.|+|..|=-+
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 46699999999 4999999998543
No 81
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=74.18 E-value=1.5 Score=25.20 Aligned_cols=16 Identities=38% Similarity=1.302 Sum_probs=11.8
Q ss_pred cccCCCCC-----ccccccCC
Q 031186 143 YCTKCSSS-----RSCATCGG 158 (164)
Q Consensus 143 yC~kCS~~-----r~C~~CgG 158 (164)
||++|... +-|+.||-
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 68888765 67888874
No 82
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=74.07 E-value=2.1 Score=25.46 Aligned_cols=17 Identities=29% Similarity=0.974 Sum_probs=13.6
Q ss_pred ccccCCCCC-----ccccccCC
Q 031186 142 SYCTKCSSS-----RSCATCGG 158 (164)
Q Consensus 142 syC~kCS~~-----r~C~~CgG 158 (164)
+.|+.|... +.|++||-
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 368999876 88999984
No 83
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=72.87 E-value=2.2 Score=36.76 Aligned_cols=32 Identities=22% Similarity=0.543 Sum_probs=25.4
Q ss_pred ccccccccccCCCCC--CCCCccCcceeeeccCH
Q 031186 85 TEIPLKTCEDCGGSG--ICPECKGEGFVLKKLSE 116 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSG--iCpeC~GeGFV~k~ls~ 116 (164)
..+..-+|++-.|.+ .||-|.|.|.+-+...+
T Consensus 23 ~~~~~~py~e~~g~~~vtCPTCqGtGrIP~eqe~ 56 (238)
T PF07092_consen 23 EDISSFPYVEFTGRDSVTCPTCQGTGRIPREQEN 56 (238)
T ss_pred cccccCccccccCCCCCcCCCCcCCccCCccchh
Confidence 467778888888744 69999999999887533
No 84
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.44 E-value=5.2 Score=35.49 Aligned_cols=51 Identities=25% Similarity=0.573 Sum_probs=35.0
Q ss_pred cccccccccCCCCC--CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC--ccccccC
Q 031186 86 EIPLKTCEDCGGSG--ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS--RSCATCG 157 (164)
Q Consensus 86 e~~~~~Ce~C~GSG--iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~--r~C~~Cg 157 (164)
.+..-.|+.|+|-+ .|..|+|-=-|+.. ++--..|.-|++|--. ..|+.|-
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~---------------------~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE---------------------EEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCceeeeee---------------------ccCCCcEEECcccCCCCceeCCccC
Confidence 44456777777776 47777777665553 4455678889999754 7788774
No 85
>COG2023 RPR2 RNase P subunit RPR2 [Translation, ribosomal structure and biogenesis]
Probab=71.12 E-value=3.5 Score=31.95 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCCccc--cccCCCC
Q 031186 117 ETAERARLTAKNMATRYTAGLPKKWS--YCTKCSS 149 (164)
Q Consensus 117 ~~A~kAr~~AKnmAtRytaGlpkkws--yC~kCS~ 149 (164)
|-|.+==..|++.+.||---||.+|+ ||.+|-+
T Consensus 30 ~laRrYv~la~~Is~K~rv~lp~~iKR~~CkkC~t 64 (105)
T COG2023 30 DLARRYVKLARRISMKYRVRLPREIKRTICKKCYT 64 (105)
T ss_pred HHHHHHHHHHHHHHHhhccccCHHHHHHhccccCc
Confidence 45556667889999999999999985 9999987
No 86
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=71.07 E-value=2.4 Score=31.26 Aligned_cols=11 Identities=45% Similarity=1.165 Sum_probs=7.5
Q ss_pred CCCCCCccCcc
Q 031186 98 SGICPECKGEG 108 (164)
Q Consensus 98 SGiCpeC~GeG 108 (164)
|.-|..|+|.|
T Consensus 5 S~~c~~c~g~g 15 (95)
T PF03589_consen 5 SDSCRRCAGDG 15 (95)
T ss_pred CCCcCccCCcc
Confidence 34577777777
No 87
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=70.57 E-value=3.9 Score=39.75 Aligned_cols=48 Identities=35% Similarity=0.848 Sum_probs=36.9
Q ss_pred ccccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC----ccccccCCc
Q 031186 87 IPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATCGGR 159 (164)
Q Consensus 87 ~~~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~CgG~ 159 (164)
.+...|.+|+-.--||.|+.- +++-+ .+.---|.-|..+ ..|+.||+.
T Consensus 433 s~~l~C~~Cg~v~~Cp~Cd~~-lt~H~------------------------~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 433 APLLLCRDCGYIAECPNCDSP-LTLHK------------------------ATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred cceeecccCCCcccCCCCCcc-eEEec------------------------CCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 467899999999999999975 33332 1234569999887 789999987
No 88
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.56 E-value=4.9 Score=35.65 Aligned_cols=21 Identities=38% Similarity=0.977 Sum_probs=17.6
Q ss_pred cccccCCCCCCCCCccCcceee
Q 031186 90 KTCEDCGGSGICPECKGEGFVL 111 (164)
Q Consensus 90 ~~Ce~C~GSGiCpeC~GeGFV~ 111 (164)
+.++ |.+.+.|..|-|.+||.
T Consensus 222 ~~~p-~~~~~~C~~CGg~rFlp 242 (281)
T KOG2824|consen 222 KGIP-CEGGGVCESCGGARFLP 242 (281)
T ss_pred hcCC-CCCCCcCCCcCCcceEe
Confidence 3455 99999999999999984
No 89
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=67.55 E-value=3.6 Score=32.20 Aligned_cols=26 Identities=38% Similarity=0.818 Sum_probs=21.9
Q ss_pred ccccccccCCCCC--CCCCccCcceeee
Q 031186 87 IPLKTCEDCGGSG--ICPECKGEGFVLK 112 (164)
Q Consensus 87 ~~~~~Ce~C~GSG--iCpeC~GeGFV~k 112 (164)
.....|+.|+|.+ .|+.|+|-=.|+.
T Consensus 97 ~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~ 124 (147)
T cd03031 97 AGGGVCEGCGGARFVPCSECNGSCKVFA 124 (147)
T ss_pred cCCCCCCCCCCcCeEECCCCCCcceEEe
Confidence 3456799999999 5999999988875
No 90
>PRK14873 primosome assembly protein PriA; Provisional
Probab=65.76 E-value=5.6 Score=37.81 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=34.4
Q ss_pred ccccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC---ccccccCCc
Q 031186 87 IPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS---RSCATCGGR 159 (164)
Q Consensus 87 ~~~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~---r~C~~CgG~ 159 (164)
.+.-.|.+|+-.-.||.|++.==+-|+ +..-.|.-|... ..|++||+.
T Consensus 381 ap~l~C~~Cg~~~~C~~C~~~L~~h~~-------------------------~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 381 VPSLACARCRTPARCRHCTGPLGLPSA-------------------------GGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred CCeeEhhhCcCeeECCCCCCceeEecC-------------------------CCeeECCCCcCCCcCccCCCCcCC
Confidence 467799999999999999974222221 124468888764 579999875
No 91
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=65.72 E-value=14 Score=32.38 Aligned_cols=26 Identities=19% Similarity=0.649 Sum_probs=21.2
Q ss_pred CccccccCCCCC-----ccccccCCcccccC
Q 031186 139 KKWSYCTKCSSS-----RSCATCGGRGKLSL 164 (164)
Q Consensus 139 kkwsyC~kCS~~-----r~C~~CgG~G~ls~ 164 (164)
..+-+|.-|... ..|+.||-..+|.|
T Consensus 208 ~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y 238 (305)
T TIGR01562 208 LRYLSCSLCATEWHYVRVKCSHCEESKHLAY 238 (305)
T ss_pred ceEEEcCCCCCcccccCccCCCCCCCCceee
Confidence 467899999987 68999998877754
No 92
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=65.64 E-value=5.5 Score=38.02 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=4.5
Q ss_pred CCccccccC
Q 031186 149 SSRSCATCG 157 (164)
Q Consensus 149 ~~r~C~~Cg 157 (164)
+.+.|+.||
T Consensus 40 ~~~fC~~CG 48 (645)
T PRK14559 40 DEAHCPNCG 48 (645)
T ss_pred ccccccccC
Confidence 445555554
No 93
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=65.64 E-value=3 Score=24.76 Aligned_cols=18 Identities=33% Similarity=1.204 Sum_probs=11.0
Q ss_pred cccccCCCCC---------ccccccCC
Q 031186 141 WSYCTKCSSS---------RSCATCGG 158 (164)
Q Consensus 141 wsyC~kCS~~---------r~C~~CgG 158 (164)
-.||++|.+. +.|+.|+-
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4689999876 78888874
No 94
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=64.88 E-value=8.9 Score=35.48 Aligned_cols=46 Identities=30% Similarity=0.572 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccccccc---------------------------ccccCCCCCCCCCcc
Q 031186 60 SVAIAATVVGAAATLLVRRTKGSEETEIPLK---------------------------TCEDCGGSGICPECK 105 (164)
Q Consensus 60 s~Aiaa~vVGaA~t~L~rr~k~~e~~e~~~~---------------------------~Ce~C~GSGiCpeC~ 105 (164)
+++..+.++.-++.||+.|+|.-..-++..+ .=..|+|-|.|.+|+
T Consensus 10 ~~~Ft~i~l~Lv~vIL~ak~klv~~gd~ti~IN~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCk 82 (410)
T COG2871 10 IVMFTVIVLILVAVILFAKSKLVKVGDITIKINGDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCK 82 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeecCceEEEeCCChhhceecCCchhHHHHHHhCCcccccCCCCCccccccE
Confidence 3344555666667788888755433222222 345899999999996
No 95
>PRK11032 hypothetical protein; Provisional
Probab=62.99 E-value=3.8 Score=33.18 Aligned_cols=34 Identities=24% Similarity=0.565 Sum_probs=25.7
Q ss_pred ccccccccccccCCCCC---------CCCCccCcceeeeccCH
Q 031186 83 EETEIPLKTCEDCGGSG---------ICPECKGEGFVLKKLSE 116 (164)
Q Consensus 83 e~~e~~~~~Ce~C~GSG---------iCpeC~GeGFV~k~ls~ 116 (164)
|-.-.-.-.|+.|+-.- -||+|.+..|.++.|+|
T Consensus 118 Evvg~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~~~F~R~~~~P 160 (160)
T PRK11032 118 EVVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQFQRRPFEP 160 (160)
T ss_pred eeeecceEEecCCCCEEEecCCCcCCCCCCCCCCeeeeCCCCC
Confidence 33445567899998543 39999999999987753
No 96
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=62.92 E-value=4.1 Score=31.89 Aligned_cols=27 Identities=37% Similarity=0.893 Sum_probs=20.2
Q ss_pred ccccccccccCCCCC--------------CCCCccCcceee
Q 031186 85 TEIPLKTCEDCGGSG--------------ICPECKGEGFVL 111 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSG--------------iCpeC~GeGFV~ 111 (164)
-..-..+|+.|+||- .||+||--|.|+
T Consensus 106 gg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~ 146 (147)
T cd03031 106 GGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVR 146 (147)
T ss_pred CCcCeEECCCCCCcceEEeccCcccccEEECCCCCcccccc
Confidence 346678888888873 388888888764
No 97
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=61.78 E-value=3.9 Score=23.59 Aligned_cols=17 Identities=29% Similarity=1.177 Sum_probs=11.4
Q ss_pred ccccCCCCC-----ccccccCC
Q 031186 142 SYCTKCSSS-----RSCATCGG 158 (164)
Q Consensus 142 syC~kCS~~-----r~C~~CgG 158 (164)
.+|+.|+.. +.|+.||-
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 367777654 67777774
No 98
>PRK12496 hypothetical protein; Provisional
Probab=61.18 E-value=4.6 Score=31.91 Aligned_cols=22 Identities=32% Similarity=0.896 Sum_probs=16.9
Q ss_pred CCcccc-ccCCCCCc-------cccccCCc
Q 031186 138 PKKWSY-CTKCSSSR-------SCATCGGR 159 (164)
Q Consensus 138 pkkwsy-C~kCS~~r-------~C~~CgG~ 159 (164)
..+|.| |+.|.-.- .|+.||.+
T Consensus 123 ~~~w~~~C~gC~~~~~~~~~~~~C~~CG~~ 152 (164)
T PRK12496 123 VIKWRKVCKGCKKKYPEDYPDDVCEICGSP 152 (164)
T ss_pred heeeeEECCCCCccccCCCCCCcCCCCCCh
Confidence 356888 99998553 39999964
No 99
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=61.16 E-value=4.5 Score=30.82 Aligned_cols=40 Identities=28% Similarity=0.636 Sum_probs=21.8
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCC
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCS 148 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS 148 (164)
..|+.||| .+...+++.+ +.+.--|+.-.-..-.+|+.|.
T Consensus 92 sRC~~CN~---~L~~v~~~~v-------~~~vp~~v~~~~~~f~~C~~C~ 131 (147)
T PF01927_consen 92 SRCPKCNG---PLRPVSKEEV-------KDRVPPYVYETYDEFWRCPGCG 131 (147)
T ss_pred CccCCCCc---Eeeechhhcc-------ccccCccccccCCeEEECCCCC
Confidence 46999998 4554443322 2223334444444466777775
No 100
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.08 E-value=4 Score=40.41 Aligned_cols=24 Identities=38% Similarity=0.875 Sum_probs=20.0
Q ss_pred ccccccCCCCC--------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG--------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG--------------iCpeC~GeGFV~k 112 (164)
.--|+.|.|.| .||.|.|..|=-+
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 44599999997 5999999999654
No 101
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=60.90 E-value=9.6 Score=26.95 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=14.7
Q ss_pred CCCCccCcceeeeccCHHHHHHH
Q 031186 100 ICPECKGEGFVLKKLSEETAERA 122 (164)
Q Consensus 100 iCpeC~GeGFV~k~ls~~~A~kA 122 (164)
.||+| ||.|+.....++.....
T Consensus 33 ~C~~C-Ge~~~~~e~~~~~~~~i 54 (127)
T TIGR03830 33 YCPAC-GEELLDPEESKRNSAAL 54 (127)
T ss_pred ECCCC-CCEEEcHHHHHHHHHHH
Confidence 49998 77788777655554333
No 102
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=59.95 E-value=5.9 Score=36.29 Aligned_cols=10 Identities=40% Similarity=1.115 Sum_probs=9.1
Q ss_pred CCCCccCcce
Q 031186 100 ICPECKGEGF 109 (164)
Q Consensus 100 iCpeC~GeGF 109 (164)
-|++|+|.||
T Consensus 490 gC~~C~~~Gy 499 (564)
T TIGR02538 490 GCDECSNTGY 499 (564)
T ss_pred CCcccCCCCC
Confidence 4999999998
No 103
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=59.71 E-value=9.6 Score=31.09 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 031186 60 SVAIAATVVGAAATLLVRRTK 80 (164)
Q Consensus 60 s~Aiaa~vVGaA~t~L~rr~k 80 (164)
..||+++||||++.++...+|
T Consensus 121 vsav~valvGAvsSyiaYqkK 141 (169)
T PF12301_consen 121 VSAVVVALVGAVSSYIAYQKK 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346778899999999886653
No 104
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=59.41 E-value=4.8 Score=42.83 Aligned_cols=25 Identities=36% Similarity=0.779 Sum_probs=20.5
Q ss_pred cccccccCCCCCC--------------CCCccCcceeee
Q 031186 88 PLKTCEDCGGSGI--------------CPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GSGi--------------CpeC~GeGFV~k 112 (164)
+.--||.|.|.|. |+.|+|..|=.+
T Consensus 1606 ~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e 1644 (1809)
T PRK00635 1606 KQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPL 1644 (1809)
T ss_pred CCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHH
Confidence 3456999999993 999999998544
No 105
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=59.22 E-value=5.1 Score=31.74 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=26.5
Q ss_pred CCCccccccccccccCCCCC---------CCCCccCcceeeecc
Q 031186 80 KGSEETEIPLKTCEDCGGSG---------ICPECKGEGFVLKKL 114 (164)
Q Consensus 80 k~~e~~e~~~~~Ce~C~GSG---------iCpeC~GeGFV~k~l 114 (164)
+.-|-+-.-.-.|..|+-.- .||+|.+..|.+..|
T Consensus 103 ~sGE~~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F~R~~~ 146 (146)
T PF07295_consen 103 HSGEVVGPGTLVCENCGHEVELTHPERLPPCPKCGHTEFTRQPL 146 (146)
T ss_pred ecCcEecCceEecccCCCEEEecCCCcCCCCCCCCCCeeeeCCC
Confidence 44455666778999998643 499999999998754
No 106
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=58.61 E-value=4.6 Score=28.76 Aligned_cols=25 Identities=36% Similarity=0.872 Sum_probs=19.4
Q ss_pred hhhhhcCCCCccccccCCCCC-------------ccccccCCc
Q 031186 130 ATRYTAGLPKKWSYCTKCSSS-------------RSCATCGGR 159 (164)
Q Consensus 130 AtRytaGlpkkwsyC~kCS~~-------------r~C~~CgG~ 159 (164)
-+||+||- -||+|+.. +-|..||-.
T Consensus 2 kkrFIAGa-----~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 2 KKRFIAGA-----VCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred CceEecCc-----cCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 47899995 69999886 678888743
No 107
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=57.25 E-value=5.9 Score=24.56 Aligned_cols=12 Identities=67% Similarity=1.545 Sum_probs=7.7
Q ss_pred ccccccCCCCCC
Q 031186 89 LKTCEDCGGSGI 100 (164)
Q Consensus 89 ~~~Ce~C~GSGi 100 (164)
.+.|+.|++.++
T Consensus 3 ~~~C~~C~~~~i 14 (33)
T PF08792_consen 3 LKKCSKCGGNGI 14 (33)
T ss_pred ceEcCCCCCCeE
Confidence 456777777664
No 108
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=56.64 E-value=5.9 Score=24.56 Aligned_cols=16 Identities=38% Similarity=1.300 Sum_probs=10.5
Q ss_pred cccCCCCC-----------ccccccCC
Q 031186 143 YCTKCSSS-----------RSCATCGG 158 (164)
Q Consensus 143 yC~kCS~~-----------r~C~~CgG 158 (164)
+||+|... -.|+.|+|
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G 27 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGG 27 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCe
Confidence 46666654 45888877
No 109
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=56.44 E-value=5.4 Score=25.02 Aligned_cols=9 Identities=22% Similarity=1.147 Sum_probs=3.9
Q ss_pred ccccCCCCC
Q 031186 142 SYCTKCSSS 150 (164)
Q Consensus 142 syC~kCS~~ 150 (164)
+||+.|++.
T Consensus 1 kfC~~CG~~ 9 (34)
T PF14803_consen 1 KFCPQCGGP 9 (34)
T ss_dssp -B-TTT--B
T ss_pred CccccccCh
Confidence 478888776
No 110
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=55.56 E-value=16 Score=23.70 Aligned_cols=22 Identities=45% Similarity=1.088 Sum_probs=14.5
Q ss_pred ccccccCCCCCC----------------CCCccCccee
Q 031186 89 LKTCEDCGGSGI----------------CPECKGEGFV 110 (164)
Q Consensus 89 ~~~Ce~C~GSGi----------------CpeC~GeGFV 110 (164)
+|+|+-|+|... |+.|..+|=+
T Consensus 1 LkPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 1 LKPCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCCcceeeEeccCCCCCEEEEECCCCCCCccc
Confidence 456666766542 8888777766
No 111
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=55.29 E-value=9.5 Score=39.92 Aligned_cols=28 Identities=32% Similarity=0.821 Sum_probs=21.5
Q ss_pred CCCccccccccccccCCCC---CCCCCccCc
Q 031186 80 KGSEETEIPLKTCEDCGGS---GICPECKGE 107 (164)
Q Consensus 80 k~~e~~e~~~~~Ce~C~GS---GiCpeC~Ge 107 (164)
++.-+-|+.+-.|+.|+.. ..||+|...
T Consensus 658 ~G~ieVEV~~rkCPkCG~~t~~~fCP~CGs~ 688 (1337)
T PRK14714 658 GGVIEVEVGRRRCPSCGTETYENRCPDCGTH 688 (1337)
T ss_pred CCeEEEEEEEEECCCCCCccccccCcccCCc
Confidence 4444578888999999974 479999765
No 112
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=55.20 E-value=2.8 Score=35.94 Aligned_cols=111 Identities=25% Similarity=0.268 Sum_probs=57.7
Q ss_pred eeeccccccccccCCcceeccccchhhhhccc-cceeccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q 031186 16 ITRDLKLRVCTGLHGKAFSSIDIKSQEQERKL-PTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCED 94 (164)
Q Consensus 16 ~~~~~~~~v~t~~~~~~~~s~~vk~~~~~rr~-~tV~~Alpetaas~Aiaa~vVGaA~t~L~rr~k~~e~~e~~~~~Ce~ 94 (164)
|.+-.+..||.+|.++...+.........|+. .+..-|| |||+|. ++|..+.. ++....+ ..|.-++-
T Consensus 45 l~~Al~VdVPddLAdkiLl~Qs~~~~~~~r~~f~r~~lAl---AASVAF---v~Gl~~~~-~~~~~~~-l~~~AlaH--- 113 (232)
T PF11859_consen 45 LEQALKVDVPDDLADKILLRQSLEEHQVQRPRFARWHLAL---AASVAF---VVGLSFGQ-LNWGPAS-LGEHALAH--- 113 (232)
T ss_pred HHHHcCCCCCccHHHHHHhhchhhhhhhhccchHHHHHHH---HHHHHH---HHHHHHHH-HhcCccc-HHHHHHHH---
Confidence 34567789999999996654433333333333 4443333 666654 44555544 3333211 11111100
Q ss_pred CCCCCCCCCccCc-ceeeeccCHHHHHHHHHHhhhhhhhhhcC--CCCccccccCCC
Q 031186 95 CGGSGICPECKGE-GFVLKKLSEETAERARLTAKNMATRYTAG--LPKKWSYCTKCS 148 (164)
Q Consensus 95 C~GSGiCpeC~Ge-GFV~k~ls~~~A~kAr~~AKnmAtRytaG--lpkkwsyC~kCS 148 (164)
=..| +|++.. +|...-...+||=+.==++.- +|-+..|=+-|.
T Consensus 114 ---------V~hE~~~~~~~--de~vsl~~VNaKla~fg~~l~~~~pg~V~Y~n~C~ 159 (232)
T PF11859_consen 114 ---------VYHEEPFALHI--DEQVSLQQVNAKLAPFGGQLSEKFPGHVYYANHCD 159 (232)
T ss_pred ---------HhhcHHHHhcc--ccCCCHHHHHHHHHhccccccccCCccEEEEeecC
Confidence 0122 566653 555556666776554444443 688888877775
No 113
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=54.40 E-value=18 Score=21.17 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=10.1
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q 031186 53 ALPETAASVAIAATVVGAAA 72 (164)
Q Consensus 53 Alpetaas~Aiaa~vVGaA~ 72 (164)
++||-+...-..++++|.++
T Consensus 1 ~VPEPst~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 1 PVPEPSTLALLGLGLLGLAF 20 (25)
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 46786653333444444444
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.16 E-value=10 Score=33.76 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=35.9
Q ss_pred cccccccccccCCCCCCCCCccCcceeeeccCHHHHHHHH--HHhhhhhhhhhcCCCCccccccCCCCC
Q 031186 84 ETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERAR--LTAKNMATRYTAGLPKKWSYCTKCSSS 150 (164)
Q Consensus 84 ~~e~~~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr--~~AKnmAtRytaGlpkkwsyC~kCS~~ 150 (164)
++....-.|..|+..- |-+|+..--= ++|=+.=.|=. ....++-..|.| +.|..|++|...
T Consensus 253 ~~~~~~~~C~~C~~~f-Cv~C~~~wh~--~~sC~eykk~~~~~~~d~~~~~~la---~~wr~CpkC~~~ 315 (384)
T KOG1812|consen 253 EVKSKRRPCVKCHELF-CVKCKVPWHA--NLSCEEYKKLNPEEYVDDITLKYLA---KRWRQCPKCKFM 315 (384)
T ss_pred chhhcccccccCCCce-eecCCCcCCC--CCCHHHHHHhCCcccccHHHHHHHH---HhcCcCccccee
Confidence 3455566789998754 9999986322 12222211111 122233445556 999999999876
No 115
>PRK03954 ribonuclease P protein component 4; Validated
Probab=54.07 E-value=14 Score=28.87 Aligned_cols=34 Identities=35% Similarity=0.660 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCCcc--ccccCCCCC
Q 031186 117 ETAERARLTAKNMATRYTAGLPKKW--SYCTKCSSS 150 (164)
Q Consensus 117 ~~A~kAr~~AKnmAtRytaGlpkkw--syC~kCS~~ 150 (164)
|-|.+=-..|++.++|+-..||..| ++|-+|.+-
T Consensus 38 elar~Yv~lar~Is~K~rirlp~~~KR~~CK~C~t~ 73 (121)
T PRK03954 38 ELANRYVELALAVQQKAKVKLPRKWKRRYCKRCHSF 73 (121)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHhhcCCCe
Confidence 4455555667788899999999965 699999764
No 116
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=53.58 E-value=13 Score=38.21 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=37.4
Q ss_pred cccccccCCC-------CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhc
Q 031186 88 PLKTCEDCGG-------SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTA 135 (164)
Q Consensus 88 ~~~~Ce~C~G-------SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRyta 135 (164)
|..-|-.|+- +|-||+|.| --++. .++-+.+|=-..||+||++|..
T Consensus 1011 Q~fRC~kC~~kYRR~PL~G~C~kCGg-~lilT-V~~GsV~KYl~~s~~la~~Y~v 1063 (1095)
T TIGR00354 1011 QEVRCTKCNTKYRRIPLVGKCLKCGN-NLTLT-VSKGSVMKYLELSKFLAENYNV 1063 (1095)
T ss_pred cceeecccCCccccCCCCCcccccCC-eEEEE-EecchhHhhHHHHHHHHHHcCc
Confidence 3567999997 578999998 44444 6888899999999999999964
No 117
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=53.12 E-value=14 Score=39.44 Aligned_cols=45 Identities=33% Similarity=0.698 Sum_probs=36.6
Q ss_pred cccccccCCC-------CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhc
Q 031186 88 PLKTCEDCGG-------SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTA 135 (164)
Q Consensus 88 ~~~~Ce~C~G-------SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRyta 135 (164)
|...| .|+- +|-||+|-| -.|+. .|+-+.+|=-..||.||++|..
T Consensus 1541 Q~~RC-kC~~kyRR~PL~G~C~kCGg-~~ilT-V~kGsv~KYl~~a~~~~~~y~v 1592 (1627)
T PRK14715 1541 QEFRC-KCGAKYRRVPLKGKCPKCGS-KLILT-VSKGAVEKYMPVAKMMAEKYNV 1592 (1627)
T ss_pred cceee-cCCCccccCCCCCcCcccCC-eEEEE-EecchHHHHHHHHHHHHHHcCc
Confidence 34679 9996 578999988 44444 6888999999999999999964
No 118
>PF12669 P12: Virus attachment protein p12 family
Probab=53.01 E-value=18 Score=24.62 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=6.4
Q ss_pred cccccCCCCCCC
Q 031186 90 KTCEDCGGSGIC 101 (164)
Q Consensus 90 ~~Ce~C~GSGiC 101 (164)
.-|..|.+.+-|
T Consensus 28 ~~c~gCs~~sgC 39 (58)
T PF12669_consen 28 GCCCGCSGCSGC 39 (58)
T ss_pred CCCCCCCCCCCc
Confidence 456666554444
No 119
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=52.08 E-value=7 Score=24.37 Aligned_cols=20 Identities=45% Similarity=1.399 Sum_probs=12.9
Q ss_pred ccccCCCCC----------CCCCccCcceeeec
Q 031186 91 TCEDCGGSG----------ICPECKGEGFVLKK 113 (164)
Q Consensus 91 ~Ce~C~GSG----------iCpeC~GeGFV~k~ 113 (164)
.|+.|+.+. +|++| |.|+..
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~C---G~Vl~e 31 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNC---GLVLEE 31 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT----BBEE-
T ss_pred CCcCCcCCceEEcCCCCeEECCCC---CCEeec
Confidence 477777654 58888 788764
No 120
>PRK06921 hypothetical protein; Provisional
Probab=51.58 E-value=8.5 Score=31.90 Aligned_cols=13 Identities=38% Similarity=1.104 Sum_probs=10.4
Q ss_pred CCCCccCcceeee
Q 031186 100 ICPECKGEGFVLK 112 (164)
Q Consensus 100 iCpeC~GeGFV~k 112 (164)
-||.|++.|||.+
T Consensus 34 ~Cp~C~dtG~i~~ 46 (266)
T PRK06921 34 DCPKCKDRGIIIY 46 (266)
T ss_pred CCCCCCCCEEEEe
Confidence 4888889999864
No 121
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=51.38 E-value=15 Score=23.07 Aligned_cols=9 Identities=44% Similarity=1.036 Sum_probs=6.4
Q ss_pred CCCCCCccC
Q 031186 98 SGICPECKG 106 (164)
Q Consensus 98 SGiCpeC~G 106 (164)
.-.||+|.+
T Consensus 26 ~~~CP~Cg~ 34 (42)
T PF09723_consen 26 PVPCPECGS 34 (42)
T ss_pred CCcCCCCCC
Confidence 346888877
No 122
>PF14353 CpXC: CpXC protein
Probab=51.36 E-value=16 Score=26.73 Aligned_cols=15 Identities=33% Similarity=0.775 Sum_probs=11.6
Q ss_pred CccccccCCcccccC
Q 031186 150 SRSCATCGGRGKLSL 164 (164)
Q Consensus 150 ~r~C~~CgG~G~ls~ 164 (164)
.-.|+.||..+.+++
T Consensus 38 ~~~CP~Cg~~~~~~~ 52 (128)
T PF14353_consen 38 SFTCPSCGHKFRLEY 52 (128)
T ss_pred EEECCCCCCceecCC
Confidence 368999998887754
No 123
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=50.95 E-value=8.8 Score=25.51 Aligned_cols=18 Identities=33% Similarity=1.003 Sum_probs=14.7
Q ss_pred cccccCCCC--------CccccccCC
Q 031186 141 WSYCTKCSS--------SRSCATCGG 158 (164)
Q Consensus 141 wsyC~kCS~--------~r~C~~CgG 158 (164)
-.+||+|.+ ...|..||-
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCC
Confidence 458999998 678998874
No 124
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=50.74 E-value=16 Score=38.35 Aligned_cols=46 Identities=35% Similarity=0.627 Sum_probs=37.5
Q ss_pred cccccccCCC-------CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhc
Q 031186 88 PLKTCEDCGG-------SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTA 135 (164)
Q Consensus 88 ~~~~Ce~C~G-------SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRyta 135 (164)
|..-|-+|+- +|-||+|.| --++. .++-+.+|=-..||+||++|..
T Consensus 1252 Q~~RC~kC~~kyRR~PL~G~C~kCGg-~iilT-v~~Gsv~KYl~~a~~~~~~y~~ 1304 (1337)
T PRK14714 1252 QEFRCLKCGTKYRRMPLAGKCRKCGG-RIILT-VHEGSVEKYLDTAKMVATEYNV 1304 (1337)
T ss_pred cceeecccCcccccCCCCCcccccCC-eEEEE-EecchHHHHHHHHHHHHHHcCc
Confidence 3467999997 578999998 44444 6888999999999999999953
No 125
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=50.72 E-value=8.4 Score=28.74 Aligned_cols=20 Identities=30% Similarity=0.851 Sum_probs=14.2
Q ss_pred cccccCCCCC-------ccccccCCcc
Q 031186 141 WSYCTKCSSS-------RSCATCGGRG 160 (164)
Q Consensus 141 wsyC~kCS~~-------r~C~~CgG~G 160 (164)
--+|..|... ..||.||+.+
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCC
Confidence 4578888753 3499999765
No 126
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.03 E-value=15 Score=34.73 Aligned_cols=35 Identities=37% Similarity=0.852 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccccccCCCCC--------------------CCCCccCcce
Q 031186 63 IAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSG--------------------ICPECKGEGF 109 (164)
Q Consensus 63 iaa~vVGaA~t~L~rr~k~~e~~e~~~~~Ce~C~GSG--------------------iCpeC~GeGF 109 (164)
++..+.|..+==|+||- |..|.... -|+.|+|.||
T Consensus 381 l~s~l~gViaQRLvr~l------------C~~C~~~~~~~~~~~~~~~~~~~~~~~~GC~~C~~~Gy 435 (500)
T COG2804 381 LASSLLGVIAQRLVRRL------------CPHCKEECEPEELARLGLSESLPLYRAVGCEACNGSGY 435 (500)
T ss_pred HHHHHHHHHHHHHHhhh------------CchhcccccchhhhhhcccccccccccCCchhhccCCc
Confidence 44556666666677765 78887777 4999999998
No 127
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=49.97 E-value=6.5 Score=25.48 Aligned_cols=10 Identities=40% Similarity=1.036 Sum_probs=5.0
Q ss_pred cccccCCCCC
Q 031186 90 KTCEDCGGSG 99 (164)
Q Consensus 90 ~~Ce~C~GSG 99 (164)
.+|+.|+|++
T Consensus 4 ~pCP~CGG~D 13 (40)
T PF08273_consen 4 GPCPICGGKD 13 (40)
T ss_dssp E--TTTT-TT
T ss_pred CCCCCCcCcc
Confidence 4688887765
No 128
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=47.86 E-value=9.9 Score=33.94 Aligned_cols=20 Identities=50% Similarity=1.333 Sum_probs=16.7
Q ss_pred ccccCCCCCCCCCccCcceee
Q 031186 91 TCEDCGGSGICPECKGEGFVL 111 (164)
Q Consensus 91 ~Ce~C~GSGiCpeC~GeGFV~ 111 (164)
.|..|+|.| |+-|++.|+|-
T Consensus 262 ~~~~~~g~g-c~~ck~~~WiE 281 (339)
T PRK00488 262 SCFKCGGKG-CRVCKGTGWLE 281 (339)
T ss_pred EEeccCCCc-ccccCCCCceE
Confidence 488899866 99999999764
No 129
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.22 E-value=4.3 Score=28.80 Aligned_cols=18 Identities=33% Similarity=1.274 Sum_probs=13.5
Q ss_pred ccccCCCCC---ccccccCCc
Q 031186 142 SYCTKCSSS---RSCATCGGR 159 (164)
Q Consensus 142 syC~kCS~~---r~C~~CgG~ 159 (164)
++|.+|.-. ..|++|||.
T Consensus 30 TFC~~C~e~~l~~~CPNCgGe 50 (57)
T PF06906_consen 30 TFCADCAETMLNGVCPNCGGE 50 (57)
T ss_pred cccHHHHHHHhcCcCcCCCCc
Confidence 467777665 589999985
No 130
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=46.46 E-value=9.5 Score=27.05 Aligned_cols=25 Identities=36% Similarity=0.894 Sum_probs=19.7
Q ss_pred hhhhhcCCCCccccccCCCCC-------------ccccccCCc
Q 031186 130 ATRYTAGLPKKWSYCTKCSSS-------------RSCATCGGR 159 (164)
Q Consensus 130 AtRytaGlpkkwsyC~kCS~~-------------r~C~~CgG~ 159 (164)
-.||+||- -||+|+.. +-|..||-.
T Consensus 3 kKRFIAGA-----~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 3 KKRFIAGA-----VCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred cceEeccc-----cCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 37899995 69999876 778888754
No 131
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=46.07 E-value=21 Score=25.05 Aligned_cols=19 Identities=58% Similarity=0.649 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 031186 60 SVAIAATVVGAAATLLVRRT 79 (164)
Q Consensus 60 s~Aiaa~vVGaA~t~L~rr~ 79 (164)
|++||++ ||..+-+|++|.
T Consensus 76 svgiAag-vG~llG~Ll~RR 94 (94)
T PF05957_consen 76 SVGIAAG-VGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHH-HHHHHHHHHhCC
Confidence 5554444 788888888774
No 132
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.03 E-value=9.4 Score=31.79 Aligned_cols=23 Identities=22% Similarity=0.736 Sum_probs=13.6
Q ss_pred ccccccCCCCC-----ccccccCCcccc
Q 031186 140 KWSYCTKCSSS-----RSCATCGGRGKL 162 (164)
Q Consensus 140 kwsyC~kCS~~-----r~C~~CgG~G~l 162 (164)
++-+|.-|... ..|+.||-....
T Consensus 196 R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~ 223 (290)
T PF04216_consen 196 RYLHCSLCGTEWRFVRIKCPYCGNTDHE 223 (290)
T ss_dssp EEEEETTT--EEE--TTS-TTT---SS-
T ss_pred EEEEcCCCCCeeeecCCCCcCCCCCCCc
Confidence 78899999987 789999976544
No 133
>PRK04023 DNA polymerase II large subunit; Validated
Probab=45.02 E-value=23 Score=36.69 Aligned_cols=46 Identities=30% Similarity=0.710 Sum_probs=36.6
Q ss_pred cccccccCCC-------CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhc
Q 031186 88 PLKTCEDCGG-------SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTA 135 (164)
Q Consensus 88 ~~~~Ce~C~G-------SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRyta 135 (164)
|..-|-.|+. +|-||+| |---++. .++-+.+|=-..+|+||++|..
T Consensus 1036 Q~fRC~kC~~kYRR~PL~G~C~kC-Gg~lilT-Vh~GsV~KYl~~s~~la~~Y~v 1088 (1121)
T PRK04023 1036 QEFRCTKCGAKYRRPPLSGKCPKC-GGNLILT-VHKGSVEKYLEVSKKLAEEYGV 1088 (1121)
T ss_pred cceeecccCcccccCCCCCcCccC-CCeEEEE-EecchHHHHHHHHHHHHHHcCC
Confidence 3567999997 5789999 4444444 6888899999999999999953
No 134
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=44.82 E-value=7.2 Score=39.30 Aligned_cols=48 Identities=31% Similarity=0.752 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCC---CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC---ccccc
Q 031186 82 SEETEIPLKTCEDCGGSG---ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS---RSCAT 155 (164)
Q Consensus 82 ~e~~e~~~~~Ce~C~GSG---iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~---r~C~~ 155 (164)
.-..|+.+-.|.+|+-.. .||+|.+.=. .-.+|++|... -.|+.
T Consensus 648 ~i~vei~~r~Cp~Cg~~t~~~~Cp~CG~~T~------------------------------~~~~Cp~C~~~~~~~~C~~ 697 (900)
T PF03833_consen 648 TIEVEIGRRRCPKCGKETFYNRCPECGSHTE------------------------------PVYVCPDCGIEVEEDECPK 697 (900)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEeeecccCcccCCcchhhcCcccCCccc------------------------------cceeccccccccCcccccc
Confidence 355678888899998776 4888865321 12468888765 46888
Q ss_pred cCCc
Q 031186 156 CGGR 159 (164)
Q Consensus 156 CgG~ 159 (164)
|+-.
T Consensus 698 C~~~ 701 (900)
T PF03833_consen 698 CGRE 701 (900)
T ss_dssp ----
T ss_pred cccc
Confidence 8754
No 135
>PF12773 DZR: Double zinc ribbon
Probab=44.68 E-value=13 Score=23.18 Aligned_cols=22 Identities=27% Similarity=0.943 Sum_probs=12.3
Q ss_pred CCCccccccCCCCCcc--------ccccCC
Q 031186 137 LPKKWSYCTKCSSSRS--------CATCGG 158 (164)
Q Consensus 137 lpkkwsyC~kCS~~r~--------C~~CgG 158 (164)
++....||+.|..... |+.||.
T Consensus 8 ~~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~ 37 (50)
T PF12773_consen 8 NPDDAKFCPHCGTPLPPPDQSKKICPNCGA 37 (50)
T ss_pred CCccccCChhhcCChhhccCCCCCCcCCcC
Confidence 3444566666665543 666654
No 136
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=44.54 E-value=9.8 Score=33.98 Aligned_cols=20 Identities=40% Similarity=1.016 Sum_probs=17.4
Q ss_pred cccCCCCCccccccCCccccc
Q 031186 143 YCTKCSSSRSCATCGGRGKLS 163 (164)
Q Consensus 143 yC~kCS~~r~C~~CgG~G~ls 163 (164)
+|..|.| ..|..|.+.|||-
T Consensus 262 ~~~~~~g-~gc~~ck~~~WiE 281 (339)
T PRK00488 262 SCFKCGG-KGCRVCKGTGWLE 281 (339)
T ss_pred EEeccCC-CcccccCCCCceE
Confidence 5888986 6899999999985
No 137
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.43 E-value=22 Score=23.32 Aligned_cols=34 Identities=35% Similarity=0.894 Sum_probs=21.1
Q ss_pred cccccccCCCCC---------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhh
Q 031186 88 PLKTCEDCGGSG---------ICPECKGEGFVLKKLSEETAERARLTAKNMATR 132 (164)
Q Consensus 88 ~~~~Ce~C~GSG---------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtR 132 (164)
+-+.|..|+... .||.| ||.... | ..+|.|++.|
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~C---g~~~~r--D------~naA~NI~~r 69 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNC---GFEMDR--D------VNAARNILRR 69 (69)
T ss_pred CccCccCcccccccccccceEEcCCC---CCEECc--H------HHHHHHHhcC
Confidence 567888887654 48887 565441 2 2345676654
No 138
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=44.32 E-value=11 Score=38.22 Aligned_cols=27 Identities=30% Similarity=0.860 Sum_probs=22.2
Q ss_pred cccccccccCCCCCC--------------CCCccCcceeee
Q 031186 86 EIPLKTCEDCGGSGI--------------CPECKGEGFVLK 112 (164)
Q Consensus 86 e~~~~~Ce~C~GSGi--------------CpeC~GeGFV~k 112 (164)
....--||+|.|.|. |+.|+|.=|=.+
T Consensus 727 NvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E 767 (935)
T COG0178 727 NVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE 767 (935)
T ss_pred cCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccc
Confidence 455678999999994 999999988544
No 139
>PF04032 Rpr2: RNAse P Rpr2/Rpp21/SNM1 subunit domain; InterPro: IPR007175 This family contains a ribonuclease P subunit of human and yeast. Other members of the family include the probable archaeal homologues. This subunit possibly binds the precursor tRNA [].; PDB: 2K3R_A 2KI7_B 2ZAE_B 1X0T_A.
Probab=44.10 E-value=32 Score=23.07 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHhhhhhhhhhcCCCCc--cccccCCCC
Q 031186 114 LSEETAERARLTAKNMATRYTAGLPKK--WSYCTKCSS 149 (164)
Q Consensus 114 ls~~~A~kAr~~AKnmAtRytaGlpkk--wsyC~kCS~ 149 (164)
-+++-+..--..+++++.++..-||.. .++|.+|.+
T Consensus 17 ~~~~lsr~y~~~~~~i~~k~~~~l~~~~kr~~Ck~C~~ 54 (85)
T PF04032_consen 17 GSPSLSRHYMKLMRKISKKTRIRLPPEIKRTICKKCGS 54 (85)
T ss_dssp C-HHHHHHHHHHHHHHHHHCT---STTCCCTB-TTT--
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHhcccccCCCC
Confidence 345666677777888889998888875 468888876
No 140
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=43.13 E-value=16 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=18.1
Q ss_pred ccccccccccCCCC--------------CCCCCccCcceee
Q 031186 85 TEIPLKTCEDCGGS--------------GICPECKGEGFVL 111 (164)
Q Consensus 85 ~e~~~~~Ce~C~GS--------------GiCpeC~GeGFV~ 111 (164)
.......| +|+-. ..||+|.+...-.
T Consensus 66 ~vp~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i 105 (124)
T PRK00762 66 MIPVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRAHI 105 (124)
T ss_pred ecCeeEEe-eCcCcccccccchhccccCCcCcCCCCCCCEE
Confidence 34556789 99866 3599998765443
No 141
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=43.04 E-value=6.2 Score=31.95 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc
Q 031186 58 AASVAIAATVVGAAATLLVRRTKGSE 83 (164)
Q Consensus 58 aas~Aiaa~vVGaA~t~L~rr~k~~e 83 (164)
.+++++++..+|+.++.|+||++..|
T Consensus 94 iagv~~~vLagGavAfsivRRs~~~e 119 (133)
T PF10814_consen 94 IAGVAVAVLAGGAVAFSIVRRSSRPE 119 (133)
T ss_pred HHHHHHHHHhccceEEEEeecCCCCC
Confidence 44567777888999999999997754
No 142
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=41.85 E-value=21 Score=36.33 Aligned_cols=33 Identities=30% Similarity=0.785 Sum_probs=27.6
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR 151 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r 151 (164)
|-|+.|.|+|++.-.+ . =||.....|.-|-|.|
T Consensus 731 GRCe~C~GdG~ikIeM---------------~-----FLpdVyv~CevC~GkR 763 (935)
T COG0178 731 GRCEACQGDGVIKIEM---------------H-----FLPDVYVPCEVCHGKR 763 (935)
T ss_pred cCCccccCCceEEEEe---------------c-----cCCCceeeCCCcCCcc
Confidence 5799999999998854 2 4899999999988876
No 143
>PRK10132 hypothetical protein; Provisional
Probab=41.64 E-value=28 Score=26.44 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 031186 60 SVAIAATVVGAAATLLVRRTK 80 (164)
Q Consensus 60 s~Aiaa~vVGaA~t~L~rr~k 80 (164)
+++||++ ||..+.+|+.|.|
T Consensus 89 svgiaag-vG~llG~Ll~RR~ 108 (108)
T PRK10132 89 SVGTAAA-VGIFIGALLSLRK 108 (108)
T ss_pred HHHHHHH-HHHHHHHHHhccC
Confidence 4554444 7888888877753
No 144
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=39.70 E-value=8.9 Score=23.64 Aligned_cols=18 Identities=44% Similarity=1.102 Sum_probs=7.9
Q ss_pred cccccCCCCC--------CCCCccCc
Q 031186 90 KTCEDCGGSG--------ICPECKGE 107 (164)
Q Consensus 90 ~~Ce~C~GSG--------iCpeC~Ge 107 (164)
-.|+-|+... +||+|..|
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCCcceeccCCEEeCCccccc
Confidence 3577776554 58888654
No 145
>PRK10220 hypothetical protein; Provisional
Probab=39.59 E-value=18 Score=28.54 Aligned_cols=20 Identities=45% Similarity=1.057 Sum_probs=15.4
Q ss_pred cccccccCCCCC--------CCCCccCc
Q 031186 88 PLKTCEDCGGSG--------ICPECKGE 107 (164)
Q Consensus 88 ~~~~Ce~C~GSG--------iCpeC~Ge 107 (164)
++..|+.|...- +||||..|
T Consensus 2 ~lP~CP~C~seytY~d~~~~vCpeC~hE 29 (111)
T PRK10220 2 SLPHCPKCNSEYTYEDNGMYICPECAHE 29 (111)
T ss_pred CCCcCCCCCCcceEcCCCeEECCcccCc
Confidence 346799998654 69999887
No 146
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=38.40 E-value=17 Score=25.13 Aligned_cols=23 Identities=30% Similarity=0.868 Sum_probs=17.5
Q ss_pred cccccccCCCCCC---CCCccCccee
Q 031186 88 PLKTCEDCGGSGI---CPECKGEGFV 110 (164)
Q Consensus 88 ~~~~Ce~C~GSGi---CpeC~GeGFV 110 (164)
....|++|+-..+ ||+|.+.=++
T Consensus 4 ~mr~C~~CgvYTLk~~CP~CG~~t~~ 29 (56)
T PRK13130 4 KIRKCPKCGVYTLKEICPVCGGKTKN 29 (56)
T ss_pred cceECCCCCCEEccccCcCCCCCCCC
Confidence 3568999998764 9999887443
No 147
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=37.81 E-value=20 Score=32.97 Aligned_cols=12 Identities=25% Similarity=0.806 Sum_probs=9.6
Q ss_pred CCccccccCCcc
Q 031186 149 SSRSCATCGGRG 160 (164)
Q Consensus 149 ~~r~C~~CgG~G 160 (164)
..+.|..|+|.|
T Consensus 487 ~~~gC~~C~~~G 498 (564)
T TIGR02538 487 GPVGCDECSNTG 498 (564)
T ss_pred cCCCCcccCCCC
Confidence 468899999876
No 148
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=37.63 E-value=16 Score=33.26 Aligned_cols=20 Identities=25% Similarity=0.707 Sum_probs=14.1
Q ss_pred CCCCccCcce-----eeeccCHHHH
Q 031186 100 ICPECKGEGF-----VLKKLSEETA 119 (164)
Q Consensus 100 iCpeC~GeGF-----V~k~ls~~~A 119 (164)
-|++|+|.|| |.+-|..+..
T Consensus 414 GC~~C~~tGy~GR~~i~Eil~~~~~ 438 (486)
T TIGR02533 414 GCPHCNHTGYLGRTGIYELLIVDDD 438 (486)
T ss_pred CchhccCCCCCCeEEEEEEEeCCHH
Confidence 3999999998 6665543333
No 149
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=37.42 E-value=34 Score=19.74 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhc
Q 031186 66 TVVGAAATLLVRRT 79 (164)
Q Consensus 66 ~vVGaA~t~L~rr~ 79 (164)
++++.+..++.||+
T Consensus 19 ~l~~~~~~~~~~rk 32 (34)
T TIGR01167 19 LLLGLGGLLLRKRK 32 (34)
T ss_pred HHHHHHHHHheecc
Confidence 44455555545554
No 150
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=37.26 E-value=16 Score=27.10 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=17.1
Q ss_pred ccccccccccCCCCC-------CCCCccCcceeee
Q 031186 85 TEIPLKTCEDCGGSG-------ICPECKGEGFVLK 112 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSG-------iCpeC~GeGFV~k 112 (164)
.......|.+|+-.. .||.|.+..+-..
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~ 100 (113)
T PF01155_consen 66 EVPARARCRDCGHEFEPDEFDFSCPRCGSPDVEII 100 (113)
T ss_dssp EE--EEEETTTS-EEECHHCCHH-SSSSSS-EEEE
T ss_pred ecCCcEECCCCCCEEecCCCCCCCcCCcCCCcEEc
Confidence 344567899999765 4999999876443
No 151
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=37.16 E-value=24 Score=30.03 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=19.6
Q ss_pred cceeeeccCHH-HHHHHHHHhhhhh
Q 031186 107 EGFVLKKLSEE-TAERARLTAKNMA 130 (164)
Q Consensus 107 eGFV~k~ls~~-~A~kAr~~AKnmA 130 (164)
|+|++..||+| +|.|+|..|+++-
T Consensus 77 erfy~p~lspeeAaaRiK~sA~dLl 101 (190)
T PLN02999 77 EKYFMPGLSPEDAAARIKQTAEGLR 101 (190)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHH
Confidence 67888888765 5889999999875
No 152
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.76 E-value=15 Score=31.80 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=9.9
Q ss_pred hccccceeccchhhH
Q 031186 44 ERKLPTVSSALPETA 58 (164)
Q Consensus 44 ~rr~~tV~~Alpeta 58 (164)
.+|...|-..+|+..
T Consensus 25 ~~r~~e~~~~~P~~~ 39 (329)
T PRK06835 25 KNRKEEVYKKIPEIA 39 (329)
T ss_pred HHHHHHHHHhCccHH
Confidence 346667777888743
No 153
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=35.97 E-value=26 Score=30.93 Aligned_cols=32 Identities=28% Similarity=0.653 Sum_probs=23.1
Q ss_pred hhhcCCCCc-cccccCCCCC----------ccccccCCccccc
Q 031186 132 RYTAGLPKK-WSYCTKCSSS----------RSCATCGGRGKLS 163 (164)
Q Consensus 132 RytaGlpkk-wsyC~kCS~~----------r~C~~CgG~G~ls 163 (164)
||..-.|.- |..|++|... ..|+.||--=+|+
T Consensus 28 ~~~~~~p~~lw~kc~~C~~~~~~~~l~~~~~vcp~c~~h~rlt 70 (296)
T CHL00174 28 SWNTQKYKHLWVQCENCYGLNYKKFLKSKMNICEQCGYHLKMS 70 (296)
T ss_pred ccCCCCCCCCeeECCCccchhhHHHHHHcCCCCCCCCCCcCCC
Confidence 333445553 9999999875 7999999765553
No 154
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=35.18 E-value=23 Score=21.91 Aligned_cols=8 Identities=38% Similarity=0.870 Sum_probs=4.7
Q ss_pred ccccccCC
Q 031186 151 RSCATCGG 158 (164)
Q Consensus 151 r~C~~CgG 158 (164)
..|+.||-
T Consensus 21 ~vC~~Cg~ 28 (52)
T smart00661 21 FVCRKCGY 28 (52)
T ss_pred EECCcCCC
Confidence 34666663
No 155
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=35.16 E-value=18 Score=32.62 Aligned_cols=13 Identities=46% Similarity=1.273 Sum_probs=11.3
Q ss_pred CCCCccCcceeee
Q 031186 100 ICPECKGEGFVLK 112 (164)
Q Consensus 100 iCpeC~GeGFV~k 112 (164)
.||-|+|.|+|..
T Consensus 392 ~Cp~C~G~G~v~s 404 (414)
T TIGR00757 392 VCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCcCeeEEcc
Confidence 4899999999876
No 156
>PHA02739 hypothetical protein; Provisional
Probab=34.38 E-value=18 Score=28.46 Aligned_cols=19 Identities=37% Similarity=0.982 Sum_probs=14.0
Q ss_pred CccccccCCCCCc------cccccC
Q 031186 139 KKWSYCTKCSSSR------SCATCG 157 (164)
Q Consensus 139 kkwsyC~kCS~~r------~C~~Cg 157 (164)
..-+||++|++.+ .|++|+
T Consensus 91 ~~~~~~~~~~~~~~~sd~~~~~~~~ 115 (116)
T PHA02739 91 EDISSCSECDSEELLSDDECCSTCD 115 (116)
T ss_pred cccccccccChhHhhcCCCcccccC
Confidence 3458999999884 567775
No 157
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=33.89 E-value=23 Score=27.82 Aligned_cols=19 Identities=42% Similarity=0.978 Sum_probs=14.2
Q ss_pred ccccccCCCCC--------CCCCccCc
Q 031186 89 LKTCEDCGGSG--------ICPECKGE 107 (164)
Q Consensus 89 ~~~Ce~C~GSG--------iCpeC~Ge 107 (164)
+..|+.|+..- +||||-.|
T Consensus 2 lp~CP~C~seytY~dg~~~iCpeC~~E 28 (109)
T TIGR00686 2 LPPCPKCNSEYTYHDGTQLICPSCLYE 28 (109)
T ss_pred CCcCCcCCCcceEecCCeeECcccccc
Confidence 45688897654 69999765
No 158
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=33.64 E-value=40 Score=22.98 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=21.0
Q ss_pred CcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCcccccc
Q 031186 106 GEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRSCATC 156 (164)
Q Consensus 106 GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r~C~~C 156 (164)
|.||+.+-...+.-.+.=+.|.+.. ..|. | ...|+.|
T Consensus 47 G~G~~~~l~~~~~~~~ll~~A~~~~-----------~~C~-C--~~gC~~C 83 (84)
T PF09369_consen 47 GAGYAERLFERERFEELLRRALELL-----------EECD-C--DDGCPSC 83 (84)
T ss_pred chhhHhhhcChhHHHHHHHHHHHHH-----------HcCC-c--cccCccc
Confidence 7888776543333344434444444 2364 6 7788888
No 159
>PRK11712 ribonuclease G; Provisional
Probab=33.18 E-value=39 Score=31.42 Aligned_cols=13 Identities=46% Similarity=1.055 Sum_probs=11.0
Q ss_pred CCCCccCcceeee
Q 031186 100 ICPECKGEGFVLK 112 (164)
Q Consensus 100 iCpeC~GeGFV~k 112 (164)
.||-|+|.|+|..
T Consensus 404 ~Cp~C~G~G~v~s 416 (489)
T PRK11712 404 ECPTCHGRGTVKT 416 (489)
T ss_pred CCCCCCCCCCcCC
Confidence 4899999999876
No 160
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=32.96 E-value=12 Score=25.23 Aligned_cols=18 Identities=33% Similarity=1.067 Sum_probs=8.0
Q ss_pred ccccccC------CCCCCCCCccC
Q 031186 89 LKTCEDC------GGSGICPECKG 106 (164)
Q Consensus 89 ~~~Ce~C------~GSGiCpeC~G 106 (164)
.++|-+| ++.|.||.|+-
T Consensus 22 f~IC~~C~~~i~~~~~g~CPgCr~ 45 (48)
T PF14570_consen 22 FQICRFCYHDILENEGGRCPGCRE 45 (48)
T ss_dssp ----HHHHHHHTTSS-SB-TTT--
T ss_pred CcHHHHHHHHHHhccCCCCCCCCC
Confidence 3456666 57899999973
No 161
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=32.85 E-value=23 Score=21.09 Aligned_cols=8 Identities=38% Similarity=1.165 Sum_probs=5.1
Q ss_pred CccccccC
Q 031186 150 SRSCATCG 157 (164)
Q Consensus 150 ~r~C~~Cg 157 (164)
.-.|++||
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 35677776
No 162
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.72 E-value=18 Score=29.13 Aligned_cols=13 Identities=54% Similarity=1.416 Sum_probs=10.9
Q ss_pred CCCCCccCcceeee
Q 031186 99 GICPECKGEGFVLK 112 (164)
Q Consensus 99 GiCpeC~GeGFV~k 112 (164)
|.||+| |||.++.
T Consensus 22 grCP~C-GeGrLF~ 34 (126)
T COG5349 22 GRCPRC-GEGRLFR 34 (126)
T ss_pred CCCCCC-CCchhhh
Confidence 679999 8888876
No 163
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.93 E-value=48 Score=25.85 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 031186 60 SVAIAATVVGAAAT 73 (164)
Q Consensus 60 s~Aiaa~vVGaA~t 73 (164)
-+.|.++|+|.+++
T Consensus 70 i~gv~aGvIg~Ill 83 (122)
T PF01102_consen 70 IFGVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45566777777663
No 164
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=31.61 E-value=39 Score=26.88 Aligned_cols=52 Identities=31% Similarity=0.869 Sum_probs=31.7
Q ss_pred CCCCccCcceeeeccCHHH-HHHHHHHhhhhhhhhhcCCCCccccccC--CCCC--------cccc---ccCCccccc
Q 031186 100 ICPECKGEGFVLKKLSEET-AERARLTAKNMATRYTAGLPKKWSYCTK--CSSS--------RSCA---TCGGRGKLS 163 (164)
Q Consensus 100 iCpeC~GeGFV~k~ls~~~-A~kAr~~AKnmAtRytaGlpkkwsyC~k--CS~~--------r~C~---~CgG~G~ls 163 (164)
.||.|+. .++... +-+-.++.+.+-.||=.| |-.|.+ |... ..|+ .| .|++.
T Consensus 47 ~C~~C~~------~~~~~~l~Nql~l~iR~~i~~YY~g----wl~Cdd~~C~~~TR~~~~~~~rC~~~~~C--~G~m~ 112 (188)
T PF08996_consen 47 QCPNCST------PLSPASLVNQLELQIREHISRYYEG----WLVCDDPTCGNRTRQLSLYGKRCPGAPGC--KGKMR 112 (188)
T ss_dssp EETTT--------B--HHHHHHHHHHHHHHHHHHHHH------CCCCTCCCHHCCCSTTSTTTCST-STT---HHCCC
T ss_pred cCCCCCC------cCCHHHHHHHHHHHHHHHHHHHHHh----CceeCcccccCcccccccCCCCCCCcccc--cceee
Confidence 3888877 444443 667778888888999988 999988 7632 2388 88 56553
No 165
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=31.54 E-value=25 Score=26.26 Aligned_cols=21 Identities=29% Similarity=0.797 Sum_probs=13.8
Q ss_pred ccccccCCCCC--------ccccccCCcc
Q 031186 140 KWSYCTKCSSS--------RSCATCGGRG 160 (164)
Q Consensus 140 kwsyC~kCS~~--------r~C~~CgG~G 160 (164)
---+|.+|... ..||.||+..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 69 AECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred cEEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 34578888543 3489998764
No 166
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=31.32 E-value=41 Score=21.17 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=24.4
Q ss_pred CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC
Q 031186 100 ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS 149 (164)
Q Consensus 100 iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~ 149 (164)
.||.|....-++-++ -+|..---+...-.|.+|.-
T Consensus 2 ~Cp~C~~~~a~~~q~---------------Q~RsaDE~mT~fy~C~~C~~ 36 (40)
T smart00440 2 PCPKCGNREATFFQL---------------QTRSADEPMTVFYVCTKCGH 36 (40)
T ss_pred cCCCCCCCeEEEEEE---------------cccCCCCCCeEEEEeCCCCC
Confidence 489998888777653 36666566677777777753
No 167
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.22 E-value=33 Score=25.69 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=18.8
Q ss_pred ccccccccccCCCCC--------CCCCccCcceeee
Q 031186 85 TEIPLKTCEDCGGSG--------ICPECKGEGFVLK 112 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSG--------iCpeC~GeGFV~k 112 (164)
....+-.|.+|+-.. .||.|.+..+-..
T Consensus 67 ~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i~ 102 (117)
T PRK00564 67 DEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIIT 102 (117)
T ss_pred ecCCEEEhhhCCCccccCCccCCcCcCCCCCceEEe
Confidence 345567899998431 3999998765433
No 168
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=30.82 E-value=17 Score=26.75 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 031186 60 SVAIAATVVGAAATLLVRRTK 80 (164)
Q Consensus 60 s~Aiaa~vVGaA~t~L~rr~k 80 (164)
++++.+++||....++++|+|
T Consensus 75 ~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 75 VVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred hhhHHHHHHHHHhheeEEeec
Confidence 445555677777777777765
No 169
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=30.37 E-value=20 Score=32.88 Aligned_cols=14 Identities=50% Similarity=1.070 Sum_probs=12.0
Q ss_pred CCCCccCcceeeec
Q 031186 100 ICPECKGEGFVLKK 113 (164)
Q Consensus 100 iCpeC~GeGFV~k~ 113 (164)
.||.|+|.|+++..
T Consensus 397 ~cp~c~G~g~v~~~ 410 (487)
T COG1530 397 RCPGCKGTGHVRST 410 (487)
T ss_pred ECCCceeeEEEecC
Confidence 59999999999863
No 170
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional
Probab=30.05 E-value=46 Score=33.44 Aligned_cols=52 Identities=17% Similarity=0.582 Sum_probs=28.3
Q ss_pred ccccccCCC----CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC
Q 031186 89 LKTCEDCGG----SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS 150 (164)
Q Consensus 89 ~~~Ce~C~G----SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~ 150 (164)
...|-.|+. +.+|..|+- .-..+...+.-...+..-.||. .-|..|-+|.|+
T Consensus 960 ~~~c~~c~~~~~~~~~c~~c~~------~~~~~~~~~~~~~~~~~e~~~~----~~~~~c~~c~g~ 1015 (1054)
T PTZ00166 960 QLQCLGCKSVIKEGALCDNCNQ------NKEPSIYGKKLAKRRHKEAEYS----QLWTQCQRCQGS 1015 (1054)
T ss_pred CcccCCCCCCCCCCCcCccccC------CCHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccCC
Confidence 467888876 579999951 0111121122111212223333 569999999876
No 171
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=29.83 E-value=17 Score=36.71 Aligned_cols=19 Identities=32% Similarity=0.927 Sum_probs=0.0
Q ss_pred cccccCCCCC----ccccccCCc
Q 031186 141 WSYCTKCSSS----RSCATCGGR 159 (164)
Q Consensus 141 wsyC~kCS~~----r~C~~CgG~ 159 (164)
+..|+.|.+. ..|+.|+-+
T Consensus 667 ~~~Cp~CG~~T~~~~~Cp~C~~~ 689 (900)
T PF03833_consen 667 YNRCPECGSHTEPVYVCPDCGIE 689 (900)
T ss_dssp -----------------------
T ss_pred hhcCcccCCccccceeccccccc
Confidence 4569999987 689999864
No 172
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=29.65 E-value=88 Score=23.39 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=4.2
Q ss_pred ccCcceeee
Q 031186 104 CKGEGFVLK 112 (164)
Q Consensus 104 C~GeGFV~k 112 (164)
|...|.+.+
T Consensus 33 Cg~~GH~~~ 41 (148)
T PTZ00368 33 CGEPGHLSR 41 (148)
T ss_pred CCCCCcCcc
Confidence 444554443
No 173
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=29.28 E-value=32 Score=27.78 Aligned_cols=21 Identities=33% Similarity=0.994 Sum_probs=16.0
Q ss_pred ccccCCCCC-CCCCccCcceee
Q 031186 91 TCEDCGGSG-ICPECKGEGFVL 111 (164)
Q Consensus 91 ~Ce~C~GSG-iCpeC~GeGFV~ 111 (164)
.|+-|.+-| +|.-|+...-++
T Consensus 144 ~C~lC~~kGfiCe~C~~~~~If 165 (202)
T PF13901_consen 144 SCELCQQKGFICEICNSDDIIF 165 (202)
T ss_pred HhHHHHhCCCCCccCCCCCCCC
Confidence 788888888 688888776554
No 174
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=29.21 E-value=52 Score=29.10 Aligned_cols=45 Identities=36% Similarity=0.606 Sum_probs=35.2
Q ss_pred ccccccCCC-------CCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhc
Q 031186 89 LKTCEDCGG-------SGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTA 135 (164)
Q Consensus 89 ~~~Ce~C~G-------SGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRyta 135 (164)
..-|.+|+- +|.||.|.| -.++. .++++..|---.+|-++|+|+-
T Consensus 167 ~~rc~~c~~k~rr~pl~g~c~kcg~-~~~lt-v~~g~v~kyL~~t~~~~~~y~~ 218 (253)
T COG1933 167 EFRCVKCNTKFRRPPLDGKCPICGG-KIVLT-VSKGAIEKYLGTAKMLVTEYKV 218 (253)
T ss_pred eeehHhhhhhhcCCCccccccccCC-eEEEE-EeccHHHHHHHHHHHHHHHcCC
Confidence 456888874 688999999 44444 5678888888899999999974
No 175
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=28.76 E-value=19 Score=22.60 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=18.4
Q ss_pred ccccccCCCCCCCCCccCccee
Q 031186 89 LKTCEDCGGSGICPECKGEGFV 110 (164)
Q Consensus 89 ~~~Ce~C~GSGiCpeC~GeGFV 110 (164)
+-.|..|....+|++|-.+|..
T Consensus 18 ry~C~~C~d~dlC~~Cf~~~~~ 39 (44)
T smart00291 18 RYHCLVCPDYDLCQSCFAKGSA 39 (44)
T ss_pred EEECCCCCCccchHHHHhCcCc
Confidence 4579999999999999887744
No 176
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=28.69 E-value=33 Score=23.47 Aligned_cols=19 Identities=32% Similarity=0.886 Sum_probs=15.6
Q ss_pred ccccccCCCCC----ccccccCC
Q 031186 140 KWSYCTKCSSS----RSCATCGG 158 (164)
Q Consensus 140 kwsyC~kCS~~----r~C~~CgG 158 (164)
.-..|+.|+.. +.|+.||-
T Consensus 26 ~l~~C~~CG~~~~~H~vC~~CG~ 48 (57)
T PRK12286 26 GLVECPNCGEPKLPHRVCPSCGY 48 (57)
T ss_pred cceECCCCCCccCCeEECCCCCc
Confidence 44679999987 89999984
No 177
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=28.65 E-value=53 Score=25.92 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=13.3
Q ss_pred ccccCCCCCCCCCccCcceeeec
Q 031186 91 TCEDCGGSGICPECKGEGFVLKK 113 (164)
Q Consensus 91 ~Ce~C~GSGiCpeC~GeGFV~k~ 113 (164)
.|....|+..||. ..|+||-.
T Consensus 169 ~~~~~~~~~~C~~--~~~~IM~~ 189 (220)
T cd04272 169 WVKGHPGSLDCPW--DDGYIMSY 189 (220)
T ss_pred cCCCCCccCcCCC--CCCeEEee
Confidence 3444455666764 56899984
No 178
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=28.26 E-value=43 Score=20.98 Aligned_cols=7 Identities=71% Similarity=1.858 Sum_probs=5.4
Q ss_pred CCCCccC
Q 031186 100 ICPECKG 106 (164)
Q Consensus 100 iCpeC~G 106 (164)
.||+|..
T Consensus 28 ~CP~Cg~ 34 (52)
T TIGR02605 28 TCPECGG 34 (52)
T ss_pred CCCCCCC
Confidence 5888876
No 179
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=28.21 E-value=30 Score=26.72 Aligned_cols=20 Identities=30% Similarity=0.888 Sum_probs=16.7
Q ss_pred ccccCCCCC-----ccccccCCccc
Q 031186 142 SYCTKCSSS-----RSCATCGGRGK 161 (164)
Q Consensus 142 syC~kCS~~-----r~C~~CgG~G~ 161 (164)
+.|.+|+.- .-|+.|+.++.
T Consensus 30 ~kC~~CG~v~~PPr~~Cp~C~~~~~ 54 (140)
T COG1545 30 TKCKKCGRVYFPPRAYCPKCGSETE 54 (140)
T ss_pred EEcCCCCeEEcCCcccCCCCCCCCc
Confidence 679999875 78999999863
No 180
>KOG1768 consensus 40s ribosomal protein S26 [Translation, ribosomal structure and biogenesis]
Probab=28.15 E-value=15 Score=29.18 Aligned_cols=57 Identities=30% Similarity=0.585 Sum_probs=38.9
Q ss_pred cccccccccCCCCCCCCC-ccCcceeeeccCHHHHHHHHHHhhhhhhhhh-cCCCC---ccccccCCC
Q 031186 86 EIPLKTCEDCGGSGICPE-CKGEGFVLKKLSEETAERARLTAKNMATRYT-AGLPK---KWSYCTKCS 148 (164)
Q Consensus 86 e~~~~~Ce~C~GSGiCpe-C~GeGFV~k~ls~~~A~kAr~~AKnmAtRyt-aGlpk---kwsyC~kCS 148 (164)
+.....|++|+- -+|. |-=--||.+++.|++|-+.-..| .+|. .+||| |.-||.-|.
T Consensus 17 ~v~~i~c~~c~~--~~~kdKaIk~f~i~niVEaaavrdisea----sv~d~y~~pKly~Klhycvsca 78 (115)
T KOG1768|consen 17 HVIPIRCTNCGR--CMPKDKAIKRFVIRNIVEAAAVRDISEA----SVFDAYVLPKLYVKLHYCVSCA 78 (115)
T ss_pred ceeeeeeccccc--cchHHHHHHHHHHHHHHHHHHhhhhhhh----eeccccccccccceeeeeEeee
Confidence 444556888765 1221 22245788888888888877766 7887 79998 667888775
No 181
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=32 Score=29.53 Aligned_cols=35 Identities=31% Similarity=0.772 Sum_probs=28.8
Q ss_pred cCCCccccccccccccCCCCC-------------CCCCccCcceeeec
Q 031186 79 TKGSEETEIPLKTCEDCGGSG-------------ICPECKGEGFVLKK 113 (164)
Q Consensus 79 ~k~~e~~e~~~~~Ce~C~GSG-------------iCpeC~GeGFV~k~ 113 (164)
....+++......|..|.|.| .|..|+|.|.|...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~ 218 (288)
T KOG0715|consen 171 FGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD 218 (288)
T ss_pred cCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccc
Confidence 344466788889999999999 39999999999885
No 182
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.84 E-value=22 Score=29.63 Aligned_cols=28 Identities=46% Similarity=0.991 Sum_probs=22.9
Q ss_pred hhhhcCCCCccccccCCCCCccccccCCcccc
Q 031186 131 TRYTAGLPKKWSYCTKCSSSRSCATCGGRGKL 162 (164)
Q Consensus 131 tRytaGlpkkwsyC~kCS~~r~C~~CgG~G~l 162 (164)
|.|.-|.--+-+||. .|.|..|||+-.|
T Consensus 74 TKFADG~GH~C~YCq----~r~CARCGGrv~l 101 (169)
T KOG3799|consen 74 TKFADGCGHNCSYCQ----TRFCARCGGRVSL 101 (169)
T ss_pred cccccccCcccchhh----hhHHHhcCCeeee
Confidence 677788888889996 6999999997543
No 183
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=27.54 E-value=78 Score=24.76 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=35.3
Q ss_pred cceeeeccCHHHH-----HHHHHHhhhhhhhhhcCCCCccccccCCCCC----------ccccccCCc
Q 031186 107 EGFVLKKLSEETA-----ERARLTAKNMATRYTAGLPKKWSYCTKCSSS----------RSCATCGGR 159 (164)
Q Consensus 107 eGFV~k~ls~~~A-----~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----------r~C~~CgG~ 159 (164)
.+|+-+ +..+.+ .+.+...|++-.|...=--..--.|+.|... -.|+.||+.
T Consensus 71 ~~Y~w~-i~~~~i~d~Ik~~~~~~~~~lk~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 71 YEYTWR-INYEKALDVLKRKLEETAKKLREKLEFETNNMFFICPNMCVRFTFNEAMELNFTCPRCGAM 137 (158)
T ss_pred EEEEEE-eCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCE
Confidence 566654 344433 3445567777777776666677789999853 789999984
No 184
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=27.40 E-value=74 Score=25.56 Aligned_cols=41 Identities=15% Similarity=0.420 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhhhhhhcCCCCccccccCCCCC----------ccccccCCc
Q 031186 119 AERARLTAKNMATRYTAGLPKKWSYCTKCSSS----------RSCATCGGR 159 (164)
Q Consensus 119 A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~----------r~C~~CgG~ 159 (164)
-.+.+...|.+-.|+..=--..--.|+.|... -.|+.|||.
T Consensus 95 k~~~~~~~~klk~~l~~e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 95 KKKKMEELKKLKEQLEEEENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEM 145 (178)
T ss_pred HHHHHHHHHHHHHHhhhccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCC
Confidence 34556667777778776666677789999753 789999984
No 185
>PF15171 Spexin: Neuropeptide secretory protein family, NPQ, spexin
Probab=27.38 E-value=26 Score=26.79 Aligned_cols=23 Identities=39% Similarity=0.310 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCCCcccccc
Q 031186 66 TVVGAAATLLVRRTKGSEETEIP 88 (164)
Q Consensus 66 ~vVGaA~t~L~rr~k~~e~~e~~ 88 (164)
++--||+.+|...+|+.|..|..
T Consensus 54 ~l~eAAallLasLqk~qe~~een 76 (90)
T PF15171_consen 54 TLPEAAALLLASLQKPQEDEEEN 76 (90)
T ss_pred ChHHHHHHHHHHHhcchhhcccc
Confidence 33445566778888888765543
No 186
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=27.08 E-value=32 Score=31.16 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.3
Q ss_pred ccccccCCcccccC
Q 031186 151 RSCATCGGRGKLSL 164 (164)
Q Consensus 151 r~C~~CgG~G~ls~ 164 (164)
.-|++|+-.++|+|
T Consensus 226 ~KC~nC~~t~~l~y 239 (308)
T COG3058 226 VKCSNCEQSKKLHY 239 (308)
T ss_pred HHhccccccCCccc
Confidence 45899999998875
No 187
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=26.89 E-value=28 Score=28.71 Aligned_cols=24 Identities=33% Similarity=1.093 Sum_probs=16.5
Q ss_pred hcCCCCccccccCCCCCc-----cccccC
Q 031186 134 TAGLPKKWSYCTKCSSSR-----SCATCG 157 (164)
Q Consensus 134 taGlpkkwsyC~kCS~~r-----~C~~Cg 157 (164)
.-|---+|+||..|-..| -|+.|+
T Consensus 106 ~~~~~~~~~~C~~C~~~rPpRs~HCsvC~ 134 (299)
T KOG1311|consen 106 VNGIQVEWKYCDTCQLYRPPRSSHCSVCN 134 (299)
T ss_pred cCCcccceEEcCcCcccCCCCcccchhhc
Confidence 344555799999998873 355554
No 188
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=26.63 E-value=56 Score=22.17 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Q 031186 61 VAIAATVVGAAATLLVRRTKGSE 83 (164)
Q Consensus 61 ~Aiaa~vVGaA~t~L~rr~k~~e 83 (164)
..++-+++|+++.+|+--+++.+
T Consensus 4 g~l~Ga~~Ga~~glL~aP~sG~e 26 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAPKSGKE 26 (74)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHH
Confidence 34567889999999988776655
No 189
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.49 E-value=49 Score=24.66 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=19.1
Q ss_pred ccccccccccCCCC-------CCCCCccCcceeee
Q 031186 85 TEIPLKTCEDCGGS-------GICPECKGEGFVLK 112 (164)
Q Consensus 85 ~e~~~~~Ce~C~GS-------GiCpeC~GeGFV~k 112 (164)
...-...|.+|+-. ..||.|.+..+-..
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~ 100 (115)
T TIGR00100 66 DEPVECECEDCSEEVSPEIDLYRCPKCHGIMLQVR 100 (115)
T ss_pred eeCcEEEcccCCCEEecCCcCccCcCCcCCCcEEe
Confidence 34456789999643 35999998765443
No 190
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=26.36 E-value=37 Score=23.86 Aligned_cols=7 Identities=57% Similarity=1.469 Sum_probs=3.8
Q ss_pred ccccccC
Q 031186 151 RSCATCG 157 (164)
Q Consensus 151 r~C~~Cg 157 (164)
.+|++||
T Consensus 37 v~C~~CG 43 (64)
T PF09855_consen 37 VSCTNCG 43 (64)
T ss_pred EECCCCC
Confidence 3566665
No 191
>PF15474 MU117: Meiotically up-regulated gene family
Probab=26.22 E-value=32 Score=25.69 Aligned_cols=10 Identities=50% Similarity=1.228 Sum_probs=9.3
Q ss_pred cCCCCCCCCC
Q 031186 94 DCGGSGICPE 103 (164)
Q Consensus 94 ~C~GSGiCpe 103 (164)
+|.||++|+.
T Consensus 3 dCkGS~~C~~ 12 (97)
T PF15474_consen 3 DCKGSSLCGT 12 (97)
T ss_pred CCCcCccCCC
Confidence 7999999997
No 192
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=26.13 E-value=21 Score=29.04 Aligned_cols=23 Identities=39% Similarity=0.986 Sum_probs=17.4
Q ss_pred cccccCCCCCC-CCCccC---cceeee
Q 031186 90 KTCEDCGGSGI-CPECKG---EGFVLK 112 (164)
Q Consensus 90 ~~Ce~C~GSGi-CpeC~G---eGFV~k 112 (164)
-.|+-|--||+ ||.|.- +|-|.+
T Consensus 4 p~~~~c~kt~ilC~~c~~~~~~G~v~~ 30 (166)
T PRK06418 4 PICEVCVKTGLLCPRCQSLLDSGEVTE 30 (166)
T ss_pred ceeeEEeccCccChhHHhHhhcCceEE
Confidence 46999999995 999963 555543
No 193
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.18 E-value=41 Score=29.80 Aligned_cols=25 Identities=32% Similarity=0.810 Sum_probs=21.5
Q ss_pred ccccccCCCCC-----ccccccCCcccccC
Q 031186 140 KWSYCTKCSSS-----RSCATCGGRGKLSL 164 (164)
Q Consensus 140 kwsyC~kCS~~-----r~C~~CgG~G~ls~ 164 (164)
.+-+|.-|... ..|+.||-.++|.|
T Consensus 211 RyL~CslC~teW~~~R~~C~~Cg~~~~l~y 240 (309)
T PRK03564 211 RYLHCNLCESEWHVVRVKCSNCEQSGKLHY 240 (309)
T ss_pred eEEEcCCCCCcccccCccCCCCCCCCceee
Confidence 67899999987 78999999888764
No 194
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=24.68 E-value=43 Score=21.00 Aligned_cols=8 Identities=38% Similarity=0.908 Sum_probs=4.8
Q ss_pred ccccccCC
Q 031186 151 RSCATCGG 158 (164)
Q Consensus 151 r~C~~CgG 158 (164)
..|+.||+
T Consensus 22 ~~Cp~CG~ 29 (46)
T PRK00398 22 VRCPYCGY 29 (46)
T ss_pred eECCCCCC
Confidence 45666664
No 195
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.65 E-value=30 Score=26.12 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=19.1
Q ss_pred hhhhhhcCCCCccccccCCC------------CCccccccCC
Q 031186 129 MATRYTAGLPKKWSYCTKCS------------SSRSCATCGG 158 (164)
Q Consensus 129 mAtRytaGlpkkwsyC~kCS------------~~r~C~~CgG 158 (164)
...|.-.=+|+ -..|+.|. +.+.|+.||-
T Consensus 10 ~~~k~k~klpt-~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~ 50 (99)
T PRK14892 10 KIIRPKPKLPK-IFECPRCGKVSISVKIKKNIAIITCGNCGL 50 (99)
T ss_pred CCcccccCCCc-EeECCCCCCeEeeeecCCCcceEECCCCCC
Confidence 33444444553 45699999 3567999984
No 196
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=24.21 E-value=21 Score=26.17 Aligned_cols=18 Identities=50% Similarity=1.211 Sum_probs=14.3
Q ss_pred ccccccCCCCC-----------CCCCccC
Q 031186 89 LKTCEDCGGSG-----------ICPECKG 106 (164)
Q Consensus 89 ~~~Ce~C~GSG-----------iCpeC~G 106 (164)
-+.|-||+..+ +|.+|.|
T Consensus 3 N~~CaDC~~~~p~w~s~~~GifvC~~Csg 31 (112)
T smart00105 3 NKKCFDCGAPNPTWASVNLGVFLCIECSG 31 (112)
T ss_pred CCcccCCCCCCCCcEEeccceeEhHHhHH
Confidence 46899998766 5999976
No 197
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=24.10 E-value=1.2e+02 Score=19.64 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031186 58 AASVAIAATVVGAAATLLVR 77 (164)
Q Consensus 58 aas~Aiaa~vVGaA~t~L~r 77 (164)
+++.+.++++++++.+++-.
T Consensus 18 at~~~gavG~~~~a~Pfv~s 37 (41)
T PF10399_consen 18 ATSAVGAVGAAAAAWPFVSS 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44555577777777777543
No 198
>PRK10404 hypothetical protein; Provisional
Probab=23.41 E-value=82 Score=23.51 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 031186 60 SVAIAATVVGAAATLLVRR 78 (164)
Q Consensus 60 s~Aiaa~vVGaA~t~L~rr 78 (164)
++.||++ ||..+-+|++|
T Consensus 83 avGiaag-vGlllG~Ll~R 100 (101)
T PRK10404 83 GIGVGAA-VGLVLGLLLAR 100 (101)
T ss_pred HHHHHHH-HHHHHHHHHhc
Confidence 4454444 78888888766
No 199
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.83 E-value=83 Score=23.44 Aligned_cols=32 Identities=22% Similarity=0.525 Sum_probs=22.8
Q ss_pred hhhhhhhcCCCCccccccCCCCC---------ccccccCCc
Q 031186 128 NMATRYTAGLPKKWSYCTKCSSS---------RSCATCGGR 159 (164)
Q Consensus 128 nmAtRytaGlpkkwsyC~kCS~~---------r~C~~CgG~ 159 (164)
+|..=-|.-+.-.-..|..|.-. |.|+.||+.
T Consensus 29 ~il~Crt~~~G~~~~~C~~Cg~~~~~~~SCk~R~CP~C~~~ 69 (111)
T PF14319_consen 29 AILACRTEALGFHRYRCEDCGHEKIVYNSCKNRHCPSCQAK 69 (111)
T ss_pred HHHhcCCccCCcceeecCCCCceEEecCcccCcCCCCCCCh
Confidence 33333455677777889998754 899999975
No 200
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=22.55 E-value=39 Score=25.22 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=16.0
Q ss_pred cCCCCCCCCCccCc---ceeeeccCHHH
Q 031186 94 DCGGSGICPECKGE---GFVLKKLSEET 118 (164)
Q Consensus 94 ~C~GSGiCpeC~Ge---GFV~k~ls~~~ 118 (164)
.|+|.|.|..|.-. +-...+|++..
T Consensus 37 ~CgG~g~C~tC~V~V~~~~~~~~l~~~~ 64 (117)
T PLN02593 37 ACEGSLACSTCHVIVMDEKVYNKLPEPT 64 (117)
T ss_pred cCCCcceeCCCEEEEecCccccCCCCCC
Confidence 59999999999532 11244555543
No 201
>smart00261 FU Furin-like repeats.
Probab=22.26 E-value=54 Score=19.82 Aligned_cols=22 Identities=41% Similarity=1.026 Sum_probs=16.4
Q ss_pred cccccCCC--CCCCCCccCcceeee
Q 031186 90 KTCEDCGG--SGICPECKGEGFVLK 112 (164)
Q Consensus 90 ~~Ce~C~G--SGiCpeC~GeGFV~k 112 (164)
..|..|.| ...|-+|.. ||.+.
T Consensus 9 ~~C~~C~~~~~~~C~~C~~-~~~l~ 32 (46)
T smart00261 9 PECATCTGPGPDDCTSCKH-GFFLD 32 (46)
T ss_pred ccccccCCcCcCcCccCCc-ccCCC
Confidence 56888888 557999975 67664
No 202
>CHL00104 rpl33 ribosomal protein L33
Probab=22.20 E-value=48 Score=23.59 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=6.9
Q ss_pred CccccccCCC
Q 031186 139 KKWSYCTKCS 148 (164)
Q Consensus 139 kkwsyC~kCS 148 (164)
.--.||+.|-
T Consensus 47 elkKycp~c~ 56 (66)
T CHL00104 47 ELKKFCPYCY 56 (66)
T ss_pred EEECcCCCCC
Confidence 3457888884
No 203
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=21.89 E-value=51 Score=22.28 Aligned_cols=19 Identities=32% Similarity=0.878 Sum_probs=15.2
Q ss_pred ccccccCCCCC----ccccccCC
Q 031186 140 KWSYCTKCSSS----RSCATCGG 158 (164)
Q Consensus 140 kwsyC~kCS~~----r~C~~CgG 158 (164)
.-..|+.|+.. +.|+.||-
T Consensus 25 ~l~~C~~cG~~~~~H~vc~~cG~ 47 (55)
T TIGR01031 25 TLVVCPNCGEFKLPHRVCPSCGY 47 (55)
T ss_pred cceECCCCCCcccCeeECCccCe
Confidence 34679999976 89999983
No 204
>PF12898 Stc1: Stc1 domain; InterPro: IPR024630 The domain contains 8 conserved cysteines that may bind to zinc. In S. pombe, proteins containing the domain act as protein linkers, which link the chromatin modifying CLRC complex to RNAi by tethering it to the RITS complex. This domain has a slightly different arrangement of its CxxC pairs from the LIM domain, hence it is not part of that family []. The tandem zinc-finger structure could mediate protein-protein interactions.
Probab=21.69 E-value=1.5e+02 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=23.8
Q ss_pred HHHhhhhhhhhhcCCCCccccccCCCCC----ccccccC
Q 031186 123 RLTAKNMATRYTAGLPKKWSYCTKCSSS----RSCATCG 157 (164)
Q Consensus 123 r~~AKnmAtRytaGlpkkwsyC~kCS~~----r~C~~Cg 157 (164)
++..+++..+ +.+..+.---|..|++. ..|..|+
T Consensus 20 ~~~~~~~~~~-~~~~~~~~i~C~~ct~~q~~El~C~~C~ 57 (84)
T PF12898_consen 20 EKLRKQIRAN-RVDPANSGIRCRECTGGQVVELTCSPCG 57 (84)
T ss_pred HHHHHHHhhc-cCccCCCCCCCccCCCCCcCcCEeccCC
Confidence 3334444444 67777778889999987 6788886
No 205
>PRK00504 rpmG 50S ribosomal protein L33; Validated
Probab=21.58 E-value=50 Score=22.28 Aligned_cols=33 Identities=24% Similarity=0.659 Sum_probs=21.0
Q ss_pred CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC
Q 031186 101 CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS 149 (164)
Q Consensus 101 CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~ 149 (164)
|.+|.+.=|+..+ + .|.+-.--.--+||+.|-.
T Consensus 10 C~~c~~rnY~t~K-----------N-----k~~~~~rLelkKycp~c~k 42 (50)
T PRK00504 10 CTECKSRNYTTTK-----------N-----KKNTPERLELKKFCPRCNK 42 (50)
T ss_pred EcCCCCccEeEcC-----------C-----CCCCCceEEEECcCCCCCC
Confidence 7788888888875 1 2333333345678888853
No 206
>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]
Probab=21.52 E-value=54 Score=28.87 Aligned_cols=34 Identities=32% Similarity=0.749 Sum_probs=26.4
Q ss_pred CCCCCC--ccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCC
Q 031186 98 SGICPE--CKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCS 148 (164)
Q Consensus 98 SGiCpe--C~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS 148 (164)
.|-||+ |||.+-+---||| +.|....--||+.|-
T Consensus 121 fG~CPRv~Cn~~~vLPvGLsD-----------------i~g~~~vkLyCpsC~ 156 (242)
T COG5041 121 FGACPRVYCNGQQVLPVGLSD-----------------IPGKSSVKLYCPSCE 156 (242)
T ss_pred cCCCCcccccCcceecccccc-----------------CCCCceeEEecCchh
Confidence 488997 9999988877765 456666677999983
No 207
>PF00471 Ribosomal_L33: Ribosomal protein L33; InterPro: IPR001705 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L33 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L33 has been shown to be on the surface of 50S subunit. L33 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , ], groups: Eubacterial L33. Algal and plant chloroplast L33. Cyanelle L33. L33 is a small protein of 49 to 66 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3PIO_1 3PIP_1 3PYT_3 3MS1_3 3F1F_6 3F1H_6 3MRZ_3 3PYO_3 3D5B_6 3D5D_6 ....
Probab=21.39 E-value=40 Score=22.37 Aligned_cols=32 Identities=28% Similarity=0.678 Sum_probs=21.7
Q ss_pred CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCC
Q 031186 101 CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCS 148 (164)
Q Consensus 101 CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS 148 (164)
|.+|.+.-|+.++- .+.+..--.--.||+.|-
T Consensus 8 c~~c~~~nY~t~kn----------------~~~~~~rL~lkKycp~~~ 39 (48)
T PF00471_consen 8 CTECGGRNYTTTKN----------------KKNTPERLELKKYCPRCR 39 (48)
T ss_dssp EEESSSSEEEEEEE----------------TTTSSSSSEEEEEETSSS
T ss_pred EcCCCCeeEEEecC----------------CCCCCceeeEeccCCCCC
Confidence 77899999998862 233334444567888884
No 208
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.34 E-value=94 Score=18.21 Aligned_cols=8 Identities=63% Similarity=1.738 Sum_probs=5.8
Q ss_pred CCCCccCc
Q 031186 100 ICPECKGE 107 (164)
Q Consensus 100 iCpeC~Ge 107 (164)
.||+|.++
T Consensus 28 ~CP~Cg~~ 35 (41)
T smart00834 28 TCPECGGD 35 (41)
T ss_pred CCCCCCCc
Confidence 58888773
No 209
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=21.19 E-value=52 Score=27.52 Aligned_cols=21 Identities=24% Similarity=0.784 Sum_probs=16.1
Q ss_pred CccccccCCCCC---------ccccccCCc
Q 031186 139 KKWSYCTKCSSS---------RSCATCGGR 159 (164)
Q Consensus 139 kkwsyC~kCS~~---------r~C~~CgG~ 159 (164)
+.-.||+.|.+. +.|+.|+-.
T Consensus 97 ~~~~fC~~CG~~~~~~~~~~~~~C~~c~~~ 126 (256)
T PRK00241 97 RSHRFCGYCGHPMHPSKTEWAMLCPHCRER 126 (256)
T ss_pred hcCccccccCCCCeecCCceeEECCCCCCE
Confidence 346799999986 569888754
No 210
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=21.12 E-value=44 Score=24.31 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=10.8
Q ss_pred cCCCCCCCCCcc
Q 031186 94 DCGGSGICPECK 105 (164)
Q Consensus 94 ~C~GSGiCpeC~ 105 (164)
.|+|.|.|..|.
T Consensus 40 ~CgG~G~CgtC~ 51 (110)
T TIGR02007 40 ACEKSCACTTCH 51 (110)
T ss_pred cCCCCceeCCCE
Confidence 599999999994
No 211
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.02 E-value=81 Score=26.64 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=35.5
Q ss_pred ceeccccchhhhhccccceeccchhhHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccCCCCCC----CC-----
Q 031186 32 AFSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGI----CP----- 102 (164)
Q Consensus 32 ~~~s~~vk~~~~~rr~~tV~~Alpetaas~Aiaa~vVGaA~t~L~rr~k~~e~~e~~~~~Ce~C~GSGi----Cp----- 102 (164)
+-++.+.+.|.+..+.+..+..+.+...-=. .+.......|-.|+..|- ||
T Consensus 23 ~~s~ee~~~~~~~~~~~~~~~~~~~~~~~d~--------------------~~~~~~~~~C~nCg~~GH~~~DCP~~iC~ 82 (190)
T COG5082 23 ANSIEESSSNPNELRSLRSSGRYEDRSVEDV--------------------SAIREENPVCFNCGQNGHLRRDCPHSICY 82 (190)
T ss_pred ccchhhhhcCccceeeccceeeeeccccccc--------------------ccccccccccchhcccCcccccCChhHhh
Confidence 3367777888888777776655544221000 022334567888888883 66
Q ss_pred CccCcceeee
Q 031186 103 ECKGEGFVLK 112 (164)
Q Consensus 103 eC~GeGFV~k 112 (164)
+|+-.|-.+.
T Consensus 83 ~C~~~~H~s~ 92 (190)
T COG5082 83 NCSWDGHRSN 92 (190)
T ss_pred hcCCCCcccc
Confidence 7765655443
No 212
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=20.83 E-value=1.6e+02 Score=18.79 Aligned_cols=9 Identities=56% Similarity=1.161 Sum_probs=6.8
Q ss_pred cccccccCC
Q 031186 88 PLKTCEDCG 96 (164)
Q Consensus 88 ~~~~Ce~C~ 96 (164)
++++|+-||
T Consensus 2 ~LkPCPFCG 10 (61)
T PF14354_consen 2 ELKPCPFCG 10 (61)
T ss_pred CCcCCCCCC
Confidence 578888883
No 213
>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]
Probab=20.71 E-value=49 Score=22.64 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=22.4
Q ss_pred CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCC
Q 031186 100 ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCS 148 (164)
Q Consensus 100 iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS 148 (164)
.|.+|.|.=|+.++ +.||+. ..-.--.||+.|-
T Consensus 9 ~ct~c~g~nY~t~k-----------N~r~~~-----~rLelkKycp~~~ 41 (50)
T COG0267 9 ACTACTSRNYTTTK-----------NKRNKP-----ERLELKKYCPVCR 41 (50)
T ss_pred EEeccCCeeEEEee-----------ccCCCc-----ceEEEEecCcccc
Confidence 48888888899875 334444 4445568998885
No 214
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=20.57 E-value=59 Score=17.60 Aligned_cols=13 Identities=38% Similarity=1.076 Sum_probs=9.7
Q ss_pred ccccccCCccccc
Q 031186 151 RSCATCGGRGKLS 163 (164)
Q Consensus 151 r~C~~CgG~G~ls 163 (164)
+.|-.|+..|-++
T Consensus 1 ~~C~~C~~~GH~~ 13 (18)
T PF00098_consen 1 RKCFNCGEPGHIA 13 (18)
T ss_dssp SBCTTTSCSSSCG
T ss_pred CcCcCCCCcCccc
Confidence 4688888888654
No 215
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=20.45 E-value=1.6e+02 Score=18.45 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc
Q 031186 56 ETAASVAIAATVVGAAATLLVRRT 79 (164)
Q Consensus 56 etaas~Aiaa~vVGaA~t~L~rr~ 79 (164)
|.+.+.+++++++.=.+..|+|-.
T Consensus 4 ~~~l~~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 4 DYSLAGAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 456677778888777777777754
No 216
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=35 Score=25.87 Aligned_cols=27 Identities=37% Similarity=1.036 Sum_probs=18.0
Q ss_pred ccccCCC---CCCCCCccCcceeeeccCHHH
Q 031186 91 TCEDCGG---SGICPECKGEGFVLKKLSEET 118 (164)
Q Consensus 91 ~Ce~C~G---SGiCpeC~GeGFV~k~ls~~~ 118 (164)
.|-||.- .|+||.|-|| +|..-.-+++
T Consensus 31 FCadCae~~l~g~CPnCGGe-lv~RP~RPaa 60 (84)
T COG3813 31 FCADCAENRLHGLCPNCGGE-LVARPIRPAA 60 (84)
T ss_pred hhHhHHHHhhcCcCCCCCch-hhcCcCChHH
Confidence 4566654 5899999775 7776654443
No 217
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=20.35 E-value=36 Score=17.88 Aligned_cols=6 Identities=50% Similarity=1.680 Sum_probs=4.1
Q ss_pred cccccc
Q 031186 140 KWSYCT 145 (164)
Q Consensus 140 kwsyC~ 145 (164)
-|+||.
T Consensus 7 FWKYCv 12 (12)
T PF02083_consen 7 FWKYCV 12 (12)
T ss_pred hhhhcC
Confidence 488884
No 218
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=20.12 E-value=42 Score=15.98 Aligned_cols=8 Identities=38% Similarity=0.430 Sum_probs=4.9
Q ss_pred Ccceeccc
Q 031186 30 GKAFSSID 37 (164)
Q Consensus 30 ~~~~~s~~ 37 (164)
++.|+||+
T Consensus 1 ~pafnswg 8 (8)
T PF08260_consen 1 DPAFNSWG 8 (8)
T ss_pred CccccccC
Confidence 35677774
No 219
>PF02988 PLA2_inh: Phospholipase A2 inhibitor; InterPro: IPR004126 Proteins in this entry inhibit basic phospholipase A2 isozymes in snake's venom [, ].; GO: 0004859 phospholipase inhibitor activity, 0005576 extracellular region
Probab=20.07 E-value=56 Score=24.11 Aligned_cols=14 Identities=57% Similarity=1.414 Sum_probs=12.6
Q ss_pred ccccCCCCCCCCCccC
Q 031186 91 TCEDCGGSGICPECKG 106 (164)
Q Consensus 91 ~Ce~C~GSGiCpeC~G 106 (164)
+||.|.+.| +.|+|
T Consensus 2 ~CEvC~~~G--~~C~G 15 (83)
T PF02988_consen 2 SCEVCHGSG--KDCSG 15 (83)
T ss_pred CcceecCcC--CCCCC
Confidence 699999999 88888
No 220
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=20.02 E-value=44 Score=20.04 Aligned_cols=18 Identities=28% Similarity=0.901 Sum_probs=9.6
Q ss_pred ccccCCCCC-----ccccccCCc
Q 031186 142 SYCTKCSSS-----RSCATCGGR 159 (164)
Q Consensus 142 syC~kCS~~-----r~C~~CgG~ 159 (164)
..|.+|... ..|+.|++.
T Consensus 12 ~rC~~Cg~~~~pPr~~Cp~C~s~ 34 (37)
T PF12172_consen 12 QRCRDCGRVQFPPRPVCPHCGSD 34 (37)
T ss_dssp EE-TTT--EEES--SEETTTT--
T ss_pred EEcCCCCCEecCCCcCCCCcCcc
Confidence 457888765 678888653
Done!