Query 031186
Match_columns 164
No_of_seqs 18 out of 20
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 16:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1exk_A DNAJ protein; extended 98.5 5.8E-08 2E-12 64.4 2.5 54 88-162 10-76 (79)
2 2ctt_A DNAJ homolog subfamily 98.3 2.6E-07 8.9E-12 64.9 3.1 54 88-162 27-93 (104)
3 1nlt_A Protein YDJ1, mitochond 98.1 1.4E-06 4.7E-11 69.8 2.5 57 89-162 38-108 (248)
4 3lcz_A YCZA, inhibitor of trap 96.8 0.00054 1.9E-08 45.0 1.9 26 88-113 8-38 (53)
5 1exk_A DNAJ protein; extended 96.7 0.0007 2.4E-08 44.6 2.2 24 89-112 28-64 (79)
6 2bx9_A Anti-trap, AT, tryptoph 96.7 0.0007 2.4E-08 44.5 1.9 26 88-113 8-38 (53)
7 2ctt_A DNAJ homolog subfamily 96.4 0.0017 5.7E-08 45.4 2.7 24 89-112 45-81 (104)
8 1nlt_A Protein YDJ1, mitochond 95.5 0.0067 2.3E-07 48.4 2.6 23 89-111 54-93 (248)
9 3lcz_A YCZA, inhibitor of trap 91.4 0.069 2.4E-06 34.9 1.3 24 140-163 8-36 (53)
10 2bx9_A Anti-trap, AT, tryptoph 91.1 0.08 2.7E-06 34.6 1.4 27 137-163 5-36 (53)
11 2r6f_A Excinuclease ABC subuni 80.8 0.66 2.3E-05 44.6 2.1 25 88-112 266-305 (972)
12 3pih_A Uvrabc system protein A 79.9 0.84 2.9E-05 43.1 2.5 25 88-112 248-287 (916)
13 2ygr_A Uvrabc system protein A 79.7 0.97 3.3E-05 43.5 2.9 25 88-112 274-314 (993)
14 2k3r_A Ribonuclease P protein 57.3 15 0.0005 27.0 4.4 35 116-150 33-69 (123)
15 2vf7_A UVRA2, excinuclease ABC 53.2 8.2 0.00028 36.2 3.1 33 99-151 639-671 (842)
16 2vf7_A UVRA2, excinuclease ABC 48.7 6.7 0.00023 36.8 1.7 15 98-112 148-162 (842)
17 3j20_Y 30S ribosomal protein S 48.4 6.1 0.00021 25.3 1.0 18 140-157 18-44 (50)
18 3u5n_A E3 ubiquitin-protein li 46.7 15 0.00051 28.0 3.1 51 85-152 3-56 (207)
19 2ks1_B Epidermal growth factor 44.0 37 0.0013 21.5 4.2 17 65-81 24-40 (44)
20 1dl6_A Transcription factor II 42.5 21 0.0007 23.1 2.9 20 90-112 12-41 (58)
21 2r6f_A Excinuclease ABC subuni 41.0 16 0.00056 35.2 3.1 33 99-151 754-786 (972)
22 1b9r_A Protein (terpredoxin); 39.5 12 0.00042 25.1 1.5 14 93-106 37-50 (105)
23 3lxf_A Ferredoxin; iron, iron- 39.2 11 0.00038 25.9 1.3 14 93-106 37-50 (104)
24 3v2d_6 50S ribosomal protein L 38.6 11 0.00038 24.8 1.1 32 101-148 13-44 (54)
25 3n9z_C Adrenodoxin; cytochrome 37.8 13 0.00044 26.8 1.5 14 93-106 43-56 (123)
26 2yql_A PHD finger protein 21A; 36.0 18 0.0006 22.6 1.7 48 85-149 5-55 (56)
27 1x0t_A Ribonuclease P protein 35.8 46 0.0016 24.1 4.2 35 116-150 38-74 (120)
28 2bt6_A Adrenodoxin 1; rutheniu 35.3 12 0.00042 25.3 0.9 14 93-106 44-57 (108)
29 1uwm_A Ferredoxin VI, FDVI; el 34.9 14 0.00047 24.9 1.1 14 93-106 37-50 (106)
30 2y5c_A Adrenodoxin-like protei 34.8 14 0.00048 25.1 1.2 14 93-106 41-54 (109)
31 2ygr_A Uvrabc system protein A 34.8 23 0.0008 34.1 3.1 33 99-151 772-804 (993)
32 3pwf_A Rubrerythrin; non heme 34.5 41 0.0014 25.5 3.9 24 136-160 134-163 (170)
33 1xlq_A Putidaredoxin, PDX; [2F 34.0 15 0.0005 24.7 1.2 14 93-106 37-50 (106)
34 2ftc_P Mitochondrial ribosomal 33.9 14 0.00048 23.9 1.0 31 101-149 14-44 (52)
35 1l5p_A Ferredoxin; [2Fe-2S] cl 33.4 15 0.00052 24.4 1.2 14 93-106 36-49 (93)
36 2kdx_A HYPA, hydrogenase/ureas 32.9 47 0.0016 23.3 3.8 24 84-107 68-99 (119)
37 2gmg_A Hypothetical protein PF 32.7 21 0.00073 26.5 2.0 25 84-108 62-94 (105)
38 1ltl_A DNA replication initiat 31.7 18 0.00063 28.7 1.6 23 90-112 135-170 (279)
39 3r8s_1 50S ribosomal protein L 31.4 30 0.001 22.3 2.3 32 101-148 10-41 (50)
40 2bx2_L Ribonuclease E, RNAse E 30.7 16 0.00054 32.9 1.2 13 100-112 410-422 (517)
41 3hui_A Ferredoxin; cytochrome 29.9 18 0.00063 26.1 1.2 14 93-106 58-71 (126)
42 3ah7_A [2Fe-2S]ferredoxin; [2F 29.6 20 0.00068 24.4 1.3 15 93-107 40-54 (113)
43 2jwa_A Receptor tyrosine-prote 28.0 54 0.0018 21.0 3.0 19 64-82 23-41 (44)
44 2l2t_A Receptor tyrosine-prote 27.7 69 0.0024 20.4 3.5 12 70-81 28-39 (44)
45 2k0a_A PRE-mRNA-splicing facto 27.0 15 0.0005 27.9 0.2 44 89-161 22-69 (109)
46 1mm2_A MI2-beta; PHD, zinc fin 26.9 1E+02 0.0035 19.4 4.3 52 82-150 2-56 (61)
47 2wlb_A ETP1-FD, electron trans 26.6 24 0.00083 23.5 1.2 14 93-106 39-52 (103)
48 4bbr_M Transcription initiatio 26.1 29 0.00098 28.8 1.9 7 91-97 23-29 (345)
49 2bw2_A Bypass of forespore C; 26.0 23 0.00078 27.3 1.1 13 99-111 64-76 (140)
50 2k1k_A Ephrin type-A receptor 25.8 55 0.0019 20.0 2.7 7 72-78 31-37 (38)
51 3pmq_A Decaheme cytochrome C M 25.5 15 0.00053 34.0 0.1 23 86-108 188-221 (669)
52 2zjr_1 50S ribosomal protein L 24.4 26 0.00089 22.9 1.0 33 101-149 14-46 (55)
53 2ku7_A MLL1 PHD3-CYP33 RRM chi 23.8 17 0.00059 24.1 0.1 43 89-151 2-45 (140)
54 3pih_A Uvrabc system protein A 23.5 49 0.0017 31.3 3.1 33 99-151 714-746 (916)
55 2bx2_L Ribonuclease E, RNAse E 23.4 25 0.00086 31.6 1.1 12 151-162 409-420 (517)
56 2akl_A PHNA-like protein PA012 23.1 32 0.0011 26.9 1.5 20 140-159 26-53 (138)
57 2lri_C Autoimmune regulator; Z 23.0 71 0.0024 20.9 3.0 48 87-151 10-60 (66)
58 3v2d_5 50S ribosomal protein L 22.8 73 0.0025 21.0 3.0 18 140-157 29-50 (60)
59 2k5r_A Uncharacterized protein 22.2 98 0.0033 22.3 3.8 36 100-138 10-45 (97)
60 2apo_B Ribosome biogenesis pro 21.6 38 0.0013 22.8 1.4 20 140-159 5-27 (60)
61 2lcq_A Putative toxin VAPC6; P 20.7 32 0.0011 25.0 1.0 21 139-159 129-157 (165)
62 3nyb_B Protein AIR2; polya RNA 20.2 87 0.003 21.5 3.1 11 89-99 5-15 (83)
63 3agx_A DNAJ homolog subfamily 20.2 29 0.00098 26.1 0.7 13 101-113 30-42 (181)
No 1
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.47 E-value=5.8e-08 Score=64.41 Aligned_cols=54 Identities=35% Similarity=0.926 Sum_probs=44.5
Q ss_pred cccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccc
Q 031186 88 PLKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCA 154 (164)
Q Consensus 88 ~~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~ 154 (164)
..+.|+.|.|+| .||.|+|.|.+... + |..+....|+.|.+. ..|.
T Consensus 10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~------------------~---g~~~~~~~C~~C~G~G~~~~~~C~ 68 (79)
T 1exk_A 10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMR------------------Q---GFFAVQQTCPHCQGRGTLIKDPCN 68 (79)
T ss_dssp CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEE------------------E---TTEEEEEECTTTTTSSEECSSBCG
T ss_pred cceECCCCcccccCCCccCCCCCCCcCeEEEEEE------------------c---CCCEEeeECcCCCCccEECCCcCC
Confidence 357899999999 49999999998763 1 555566789999987 4799
Q ss_pred ccCCcccc
Q 031186 155 TCGGRGKL 162 (164)
Q Consensus 155 ~CgG~G~l 162 (164)
+|.|.|.+
T Consensus 69 ~C~G~G~~ 76 (79)
T 1exk_A 69 KCHGHGRV 76 (79)
T ss_dssp GGTTSSEE
T ss_pred CCCCeEEE
Confidence 99999976
No 2
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2.6e-07 Score=64.90 Aligned_cols=54 Identities=33% Similarity=0.776 Sum_probs=43.8
Q ss_pred cccccccCCCCC--------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC-----cccc
Q 031186 88 PLKTCEDCGGSG--------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS-----RSCA 154 (164)
Q Consensus 88 ~~~~Ce~C~GSG--------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~-----r~C~ 154 (164)
....|+.|.|+| .||.|+|.|.|.... |.......|+.|.+. ..|.
T Consensus 27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~---------------------G~~~~~~~C~~C~G~G~~i~~~C~ 85 (104)
T 2ctt_A 27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT---------------------GPFVMRSTCRRCGGRGSIIISPCV 85 (104)
T ss_dssp CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE---------------------TTEEEEEECSSSSSSSEECSSCCS
T ss_pred eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe---------------------CCEEEEEECCcCCCcceECCCcCC
Confidence 347899999998 499999999987631 434456789999996 4799
Q ss_pred ccCCcccc
Q 031186 155 TCGGRGKL 162 (164)
Q Consensus 155 ~CgG~G~l 162 (164)
+|.|.|.+
T Consensus 86 ~C~G~G~v 93 (104)
T 2ctt_A 86 VCRGAGQA 93 (104)
T ss_dssp SSSSCSEE
T ss_pred CCCCeeEE
Confidence 99999975
No 3
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.06 E-value=1.4e-06 Score=69.80 Aligned_cols=57 Identities=23% Similarity=0.672 Sum_probs=43.1
Q ss_pred ccccccCCCCC-------CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC-------Ccccc
Q 031186 89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS-------SRSCA 154 (164)
Q Consensus 89 ~~~Ce~C~GSG-------iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~-------~r~C~ 154 (164)
...|+.|.|+| .||.|+|.|++... ++...-.-+....|++|.| ...|.
T Consensus 38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~-----------------~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~ 100 (248)
T 1nlt_A 38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVT-----------------RQMGPMIQRFQTECDVCHGTGDIIDPKDRCK 100 (248)
T ss_dssp EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEE-----------------EESSSEEEEEECSCTTCSSSSSCCCTTSBCS
T ss_pred EEeCCCCcCccCCCCCCccCCCCCCCcEEEEE-----------------EecCceEEEEEEcCCCCCCcCEEeccCCCCc
Confidence 46899999999 69999999998763 2211111235678999998 46899
Q ss_pred ccCCcccc
Q 031186 155 TCGGRGKL 162 (164)
Q Consensus 155 ~CgG~G~l 162 (164)
+|.|.|.+
T Consensus 101 ~C~G~g~~ 108 (248)
T 1nlt_A 101 SCNGKKVE 108 (248)
T ss_dssp SSTTSCEE
T ss_pred ccCCCceE
Confidence 99999975
No 4
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.76 E-value=0.00054 Score=45.04 Aligned_cols=26 Identities=46% Similarity=1.109 Sum_probs=23.1
Q ss_pred cccccccCCCCCC-----CCCccCcceeeec
Q 031186 88 PLKTCEDCGGSGI-----CPECKGEGFVLKK 113 (164)
Q Consensus 88 ~~~~Ce~C~GSGi-----CpeC~GeGFV~k~ 113 (164)
-..+|++|.|+|- |+.|+|.|+|.++
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 3568999999995 9999999999885
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=96.72 E-value=0.0007 Score=44.58 Aligned_cols=24 Identities=50% Similarity=1.238 Sum_probs=20.2
Q ss_pred ccccccCCCCC-------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG-------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k 112 (164)
...|+.|+|+| .||.|+|.|.+.+
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 64 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK 64 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC
Confidence 46899999998 5999999998865
No 6
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.66 E-value=0.0007 Score=44.50 Aligned_cols=26 Identities=35% Similarity=0.924 Sum_probs=22.8
Q ss_pred cccccccCCCCC-----CCCCccCcceeeec
Q 031186 88 PLKTCEDCGGSG-----ICPECKGEGFVLKK 113 (164)
Q Consensus 88 ~~~~Ce~C~GSG-----iCpeC~GeGFV~k~ 113 (164)
-...|+.|+|+| .||.|+|.|+|.+.
T Consensus 8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 8 LEVACPKCERAGEIEGTPCPACSGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred ccccCCCCcceeccCCCCCccCCCCccEEEE
Confidence 356899999999 59999999999883
No 7
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.0017 Score=45.37 Aligned_cols=24 Identities=42% Similarity=1.124 Sum_probs=17.5
Q ss_pred ccccccCCCCC-------------CCCCccCcceeee
Q 031186 89 LKTCEDCGGSG-------------ICPECKGEGFVLK 112 (164)
Q Consensus 89 ~~~Ce~C~GSG-------------iCpeC~GeGFV~k 112 (164)
...|..|+|+| .||.|+|.|.+.+
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~ 81 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII 81 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC
Confidence 45788888887 4888888887654
No 8
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=95.49 E-value=0.0067 Score=48.43 Aligned_cols=23 Identities=39% Similarity=1.087 Sum_probs=18.7
Q ss_pred ccccccCCCCC-----------------CCCCccCcceee
Q 031186 89 LKTCEDCGGSG-----------------ICPECKGEGFVL 111 (164)
Q Consensus 89 ~~~Ce~C~GSG-----------------iCpeC~GeGFV~ 111 (164)
...|..|+|+| .||.|+|.|.+.
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i 93 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII 93 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence 37899999888 388888888777
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=91.40 E-value=0.069 Score=34.92 Aligned_cols=24 Identities=29% Similarity=0.768 Sum_probs=20.0
Q ss_pred ccccccCCCCC-----ccccccCCccccc
Q 031186 140 KWSYCTKCSSS-----RSCATCGGRGKLS 163 (164)
Q Consensus 140 kwsyC~kCS~~-----r~C~~CgG~G~ls 163 (164)
-...|+.|+|+ ..|++|+|.|.+.
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 35789999988 6799999999763
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=91.10 E-value=0.08 Score=34.60 Aligned_cols=27 Identities=26% Similarity=0.688 Sum_probs=21.7
Q ss_pred CCCccccccCCCCC-----ccccccCCccccc
Q 031186 137 LPKKWSYCTKCSSS-----RSCATCGGRGKLS 163 (164)
Q Consensus 137 lpkkwsyC~kCS~~-----r~C~~CgG~G~ls 163 (164)
++..-..|+.|.|. ..|++|+|.|++.
T Consensus 5 ~~~~~~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 5 TDDLEVACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp HHHHEEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred cCCccccCCCCcceeccCCCCCccCCCCccEE
Confidence 34445789999988 6899999999863
No 11
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=80.81 E-value=0.66 Score=44.60 Aligned_cols=25 Identities=44% Similarity=0.974 Sum_probs=21.2
Q ss_pred cccccccCCCC---------------CCCCCccCcceeee
Q 031186 88 PLKTCEDCGGS---------------GICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GS---------------GiCpeC~GeGFV~k 112 (164)
+.-.|++|+-+ |.||+|+|-|+++.
T Consensus 266 ~~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~~ 305 (972)
T 2r6f_A 266 EKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLE 305 (972)
T ss_dssp SSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEEE
T ss_pred ccccCCCCCCcCCCCChhhcCcCCCCCCCCCCcCccceEe
Confidence 34579999986 89999999999973
No 12
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=79.92 E-value=0.84 Score=43.12 Aligned_cols=25 Identities=40% Similarity=0.991 Sum_probs=20.2
Q ss_pred cccccccCCCC---------------CCCCCccCcceeee
Q 031186 88 PLKTCEDCGGS---------------GICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~GS---------------GiCpeC~GeGFV~k 112 (164)
+.-.|++|+-+ |.||+|.|-|+++.
T Consensus 248 ~~~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~G~G~~~~ 287 (916)
T 3pih_A 248 ENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTFE 287 (916)
T ss_dssp SSCBCTTTCCCCCCCSGGGGCTTSTTTBCTTTTTSSEEEE
T ss_pred ccccCcccCCccCCCCHhhcCCCCCCCcCCeeecccceEe
Confidence 34579999854 88999999999864
No 13
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=79.73 E-value=0.97 Score=43.50 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=20.7
Q ss_pred cccccccCC-CC---------------CCCCCccCcceeee
Q 031186 88 PLKTCEDCG-GS---------------GICPECKGEGFVLK 112 (164)
Q Consensus 88 ~~~~Ce~C~-GS---------------GiCpeC~GeGFV~k 112 (164)
+.-.|++|+ -+ |.||+|+|-|+++.
T Consensus 274 ~~~~c~~~g~~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~~ 314 (993)
T 2ygr_A 274 EKLACPNGHALAVDDLEPRSFSFNSPYGACPDCSGLGIRKE 314 (993)
T ss_dssp SSCBCTTCCCCSCSCCCGGGGCTTSTTTBCTTTTTSCEEEE
T ss_pred ccccCCCCCCcccCCCChhhcCcCCCCCCCCCCcCccceee
Confidence 345799999 54 89999999999973
No 14
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=57.31 E-value=15 Score=26.99 Aligned_cols=35 Identities=31% Similarity=0.597 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCCCcc--ccccCCCCC
Q 031186 116 EETAERARLTAKNMATRYTAGLPKKW--SYCTKCSSS 150 (164)
Q Consensus 116 ~~~A~kAr~~AKnmAtRytaGlpkkw--syC~kCS~~ 150 (164)
++-|..--..+++.+.++..-||..| .+|-+|.+-
T Consensus 33 p~LSr~Y~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~ 69 (123)
T 2k3r_A 33 PELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAF 69 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSSTTTTSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCE
Confidence 44455555677888999999999865 699999763
No 15
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=53.16 E-value=8.2 Score=36.17 Aligned_cols=33 Identities=39% Similarity=0.931 Sum_probs=23.8
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR 151 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r 151 (164)
|.|+.|+|+|++.-.+ . =+|..+..|..|.|.|
T Consensus 639 g~c~~c~g~G~~~~~~---------------~-----f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 639 GRCEHCQGEGWVMVEL---------------L-----FLPSVYAPCPVCHGTR 671 (842)
T ss_dssp TBCTTTTTCSEEEETT---------------C-----SSSCEEEECTTTTTCC
T ss_pred cccccccCCCccchhh---------------h-----cCCccceecccccCcc
Confidence 6688888888887532 2 2677777788887765
No 16
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=48.69 E-value=6.7 Score=36.76 Aligned_cols=15 Identities=53% Similarity=1.143 Sum_probs=13.4
Q ss_pred CCCCCCccCcceeee
Q 031186 98 SGICPECKGEGFVLK 112 (164)
Q Consensus 98 SGiCpeC~GeGFV~k 112 (164)
.|.||+|+|.|++..
T Consensus 148 ~G~C~~C~G~G~~~~ 162 (842)
T 2vf7_A 148 EGACPECHGLGRVYT 162 (842)
T ss_dssp TTBCTTTTSSSEEEE
T ss_pred CCCCccccCCccEEE
Confidence 389999999999976
No 17
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.43 E-value=6.1 Score=25.25 Aligned_cols=18 Identities=33% Similarity=1.138 Sum_probs=13.6
Q ss_pred ccccccCCCCC---------ccccccC
Q 031186 140 KWSYCTKCSSS---------RSCATCG 157 (164)
Q Consensus 140 kwsyC~kCS~~---------r~C~~Cg 157 (164)
...+||+|.+. ..|..||
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 45789999873 5788886
No 18
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=46.72 E-value=15 Score=27.97 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=35.4
Q ss_pred ccccccccccCCCCC---CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCcc
Q 031186 85 TEIPLKTCEDCGGSG---ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSRS 152 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSG---iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r~ 152 (164)
++.....|..|+..| .|..|. .+|=+.=|.+ -....|+.--+|+.|.....
T Consensus 3 ~d~~~~~C~~C~~~g~ll~Cd~C~-~~~H~~Cl~p----------------~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGDLLCCEKCP-KVFHLTCHVP----------------TLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CCSSCSSBTTTCCCEEEEECSSSS-CEECTTTSSS----------------CCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCCceEEcCCCC-CccCCccCCC----------------CCCCCCCCCEEeCceeCccc
Confidence 455667899999877 588887 6776665422 11236777779999988653
No 19
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=44.04 E-value=37 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhcCC
Q 031186 65 ATVVGAAATLLVRRTKG 81 (164)
Q Consensus 65 a~vVGaA~t~L~rr~k~ 81 (164)
+.+++.+..+++||.+.
T Consensus 24 ~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 24 LLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 33444555666777654
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=42.54 E-value=21 Score=23.07 Aligned_cols=20 Identities=45% Similarity=0.977 Sum_probs=14.9
Q ss_pred cccccCCCCC----------CCCCccCcceeee
Q 031186 90 KTCEDCGGSG----------ICPECKGEGFVLK 112 (164)
Q Consensus 90 ~~Ce~C~GSG----------iCpeC~GeGFV~k 112 (164)
..|++|++.. +|.+| |+|+.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~C---GlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPEC---GLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTT---CCEEC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCC---CCEEe
Confidence 4699997743 48888 88876
No 21
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=40.99 E-value=16 Score=35.16 Aligned_cols=33 Identities=30% Similarity=0.785 Sum_probs=22.4
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR 151 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r 151 (164)
|-||.|+|+|++.-.+ . =+|..+..|..|.|.|
T Consensus 754 grC~~C~g~G~i~~em---------------~-----fl~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 754 GRCEACHGDGIIKIEM---------------H-----FLPDVYVPCEVCHGKR 786 (972)
T ss_dssp TBCTTTTTCSEEEECC---------------S-----SSCCEEEECTTTTTCC
T ss_pred ccccccccccceeeeh---------------h-----cccccccccccccccc
Confidence 6788888888886532 1 2566677777776654
No 22
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=39.54 E-value=12 Score=25.10 Aligned_cols=14 Identities=43% Similarity=1.239 Sum_probs=12.2
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
-.|+|.|.|..|.-
T Consensus 37 ~~C~g~G~CgtC~v 50 (105)
T 1b9r_A 37 AECGGSCVCATCRI 50 (105)
T ss_dssp CSSTTSSCCCCCCC
T ss_pred cCCCCCCCcCcCEE
Confidence 46999999999975
No 23
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=39.25 E-value=11 Score=25.85 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
..|+|.|.|.-|.-
T Consensus 37 ~~C~G~G~CgtC~v 50 (104)
T 3lxf_A 37 ALCGGCCSCATCHV 50 (104)
T ss_dssp CTTCSSSSCSTTEE
T ss_pred cCCCCCCCCCCCEE
Confidence 48999999999974
No 24
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=38.62 E-value=11 Score=24.78 Aligned_cols=32 Identities=31% Similarity=0.646 Sum_probs=23.5
Q ss_pred CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCC
Q 031186 101 CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCS 148 (164)
Q Consensus 101 CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS 148 (164)
|.+|.+.-|+.++= .|.+-..-.--+||+.|.
T Consensus 13 ct~c~~~nY~T~KN----------------krn~p~rLelkKycp~c~ 44 (54)
T 3v2d_6 13 CTECKRRNYATEKN----------------KRNTPNKLELRKYCPWCR 44 (54)
T ss_dssp ETTTCCEEEEEEEE----------------TTTSCSCCEEEEEETTTT
T ss_pred EeCCCCccEeEeec----------------CCCCCcccEEeeeCCCCC
Confidence 77888888998751 556666666678999885
No 25
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=37.81 E-value=13 Score=26.78 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=12.4
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
..|+|.|.|..|.-
T Consensus 43 ~~CgG~g~CgtC~v 56 (123)
T 3n9z_C 43 GACEGTLACSTCHL 56 (123)
T ss_dssp CTTCSSSSCSTTBC
T ss_pred CCCCCCCEeCCCee
Confidence 47999999999986
No 26
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.04 E-value=18 Score=22.56 Aligned_cols=48 Identities=25% Similarity=0.556 Sum_probs=31.4
Q ss_pred ccccccccccCCCCC---CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC
Q 031186 85 TEIPLKTCEDCGGSG---ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS 149 (164)
Q Consensus 85 ~e~~~~~Ce~C~GSG---iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~ 149 (164)
.+.....|..|+..| .|..|. .+|=+.=|.+. ...+|+.--||+.|..
T Consensus 5 ~~~~~~~C~vC~~~g~ll~Cd~C~-~~~H~~Cl~pp----------------l~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKSGQLLMCDTCS-RVYHLDCLDPP----------------LKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCSSCCEECSSSS-CEECSSSSSSC----------------CCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCCCeEEEcCCCC-cceECccCCCC----------------cCCCCCCceEChhhhC
Confidence 455667799998777 499998 77866654221 1125666667888754
No 27
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=35.81 E-value=46 Score=24.08 Aligned_cols=35 Identities=26% Similarity=0.634 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCCCcc--ccccCCCCC
Q 031186 116 EETAERARLTAKNMATRYTAGLPKKW--SYCTKCSSS 150 (164)
Q Consensus 116 ~~~A~kAr~~AKnmAtRytaGlpkkw--syC~kCS~~ 150 (164)
++-|..--..+++.+.++..-||..| .+|-+|.+-
T Consensus 38 p~lSr~Y~~~~~~is~k~~irlp~~~KR~~Ck~C~s~ 74 (120)
T 1x0t_A 38 PDLAKRYVELALEIQKKAKVKIPRKWKRRYCKRCHTF 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCTTTTTSBCTTTCCB
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCE
Confidence 45566666677889999999999865 699999763
No 28
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=35.30 E-value=12 Score=25.31 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=12.4
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
-.|+|.|.|.-|..
T Consensus 44 ~~Cgg~G~CgtC~v 57 (108)
T 2bt6_A 44 GACEGTLACSTCHL 57 (108)
T ss_dssp TTTSSSSSBSTTEE
T ss_pred cCCCCCcCcCCCEE
Confidence 57999999999965
No 29
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=34.87 E-value=14 Score=24.90 Aligned_cols=14 Identities=43% Similarity=1.239 Sum_probs=12.0
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
-.|+|.|.|.-|.-
T Consensus 37 ~~C~g~G~CgtC~v 50 (106)
T 1uwm_A 37 ADCGGACACSTCHA 50 (106)
T ss_dssp CTTSSSSSSCTTEE
T ss_pred cCCCCCCCcCcCEE
Confidence 46999999999965
No 30
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=34.84 E-value=14 Score=25.15 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=12.0
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
-.|+|+|.|.-|..
T Consensus 41 ~~C~g~G~CgtC~v 54 (109)
T 2y5c_A 41 GACEASLACSTCHV 54 (109)
T ss_dssp CTTSSSSSCCTTEE
T ss_pred cCCCCCcCcCccEE
Confidence 36999999999965
No 31
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=34.78 E-value=23 Score=34.14 Aligned_cols=33 Identities=30% Similarity=0.767 Sum_probs=22.1
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR 151 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r 151 (164)
|-|+.|.|+|++.-.+ . =+|..+..|.-|.|.|
T Consensus 772 grC~~C~g~G~~~~e~---------------~-----fl~~v~~~ce~c~G~r 804 (993)
T 2ygr_A 772 GRCEACTGDGTIKIEM---------------N-----FLPDVYVPCEVCQGAR 804 (993)
T ss_dssp TBCTTTTSSSEEEECC---------------T-----TSCCEEEECTTTTTCS
T ss_pred ccccccccccceeehh---------------h-----ccccceeeehhccccc
Confidence 6688888888886532 1 2566677777776654
No 32
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.55 E-value=41 Score=25.47 Aligned_cols=24 Identities=25% Similarity=0.737 Sum_probs=18.0
Q ss_pred CCCCccccccCCCCC------ccccccCCcc
Q 031186 136 GLPKKWSYCTKCSSS------RSCATCGGRG 160 (164)
Q Consensus 136 GlpkkwsyC~kCS~~------r~C~~CgG~G 160 (164)
-.+++|. |+.|+-. -.||.||...
T Consensus 134 ~~~~~~~-C~~CG~i~~~~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 134 EIKKVYI-CPICGYTAVDEAPEYCPVCGAPK 163 (170)
T ss_dssp CCSCEEE-CTTTCCEEESCCCSBCTTTCCBG
T ss_pred CCCCeeE-eCCCCCeeCCCCCCCCCCCCCCH
Confidence 3456786 9999864 4899999654
No 33
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=34.03 E-value=15 Score=24.74 Aligned_cols=14 Identities=50% Similarity=1.189 Sum_probs=12.0
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
-.|+|.|.|.-|..
T Consensus 37 ~~C~g~G~CgtC~v 50 (106)
T 1xlq_A 37 GDCGGSASCATCHV 50 (106)
T ss_dssp CTTCSSSSSCTTEE
T ss_pred cCCCCCcccCcCEE
Confidence 46889999999965
No 34
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=33.89 E-value=14 Score=23.90 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=20.8
Q ss_pred CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC
Q 031186 101 CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS 149 (164)
Q Consensus 101 CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~ 149 (164)
|.+|.|.-|+.++ .| +...-.-..|||.|.-
T Consensus 14 ct~c~~~~Y~t~K-----------------nr-~~~rLelkKycp~~~k 44 (52)
T 2ftc_P 14 SEAGTGFCFNTKR-----------------NR-LREKLTLLHYDPVVKQ 44 (52)
T ss_pred EecCCCeeEEEec-----------------CC-CCceeEEEccCCCCCc
Confidence 6677777788875 23 4444455689999853
No 35
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=33.36 E-value=15 Score=24.35 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.8
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
-.|+|.|.|..|.-
T Consensus 36 ~~C~G~G~Cg~C~v 49 (93)
T 1l5p_A 36 DTCQGNKACGKCIC 49 (93)
T ss_dssp TSCSSSSSSCCCEE
T ss_pred cCCCCcCCcCCCEE
Confidence 35889999999965
No 36
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.92 E-value=47 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=17.6
Q ss_pred cccccccccccCCCC-------C-CCCCccCc
Q 031186 84 ETEIPLKTCEDCGGS-------G-ICPECKGE 107 (164)
Q Consensus 84 ~~e~~~~~Ce~C~GS-------G-iCpeC~Ge 107 (164)
......-.|.+|+-. . .||.|.+.
T Consensus 68 ~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 68 VDEKVELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EEECCEEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred EeccceEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 345567889999753 4 79999665
No 37
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.67 E-value=21 Score=26.46 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=18.8
Q ss_pred cccccccccccCCCCC--------CCCCccCcc
Q 031186 84 ETEIPLKTCEDCGGSG--------ICPECKGEG 108 (164)
Q Consensus 84 ~~e~~~~~Ce~C~GSG--------iCpeC~GeG 108 (164)
.-.+....|.+||-.- .||+|+.+-
T Consensus 62 ~L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFKAEINIPSRCPKCKSEW 94 (105)
T ss_dssp EEEECCCBBTTTCCBCCCCSSCCSSCSSSCCCC
T ss_pred EEEEECcChhhCcCeecccCCCCCCCcCCCCCc
Confidence 4456677899998653 599999874
No 38
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=31.72 E-value=18 Score=28.70 Aligned_cols=23 Identities=35% Similarity=0.852 Sum_probs=17.1
Q ss_pred cccccCCCC-------------CCCCCccCcceeee
Q 031186 90 KTCEDCGGS-------------GICPECKGEGFVLK 112 (164)
Q Consensus 90 ~~Ce~C~GS-------------GiCpeC~GeGFV~k 112 (164)
-.|..|+.. ..||.|++.||.+.
T Consensus 135 f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l~ 170 (279)
T 1ltl_A 135 FECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLL 170 (279)
T ss_dssp EEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEEC
T ss_pred EEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEEe
Confidence 479999732 14999999997654
No 39
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=31.37 E-value=30 Score=22.31 Aligned_cols=32 Identities=9% Similarity=-0.014 Sum_probs=24.1
Q ss_pred CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCC
Q 031186 101 CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCS 148 (164)
Q Consensus 101 CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS 148 (164)
|.+|.|.=|+.++= .|.+...-.--.||+.|-
T Consensus 10 ct~c~~~nY~t~kn----------------~~~~~~rLelkKycp~~~ 41 (50)
T 3r8s_1 10 SSAGTGHFYTTTKN----------------KRTKPEKLELKKFDPVVR 41 (50)
T ss_dssp ESSSSCCEEEEEEC----------------GGGCCSCCCEEEEETTTT
T ss_pred EcCCCCEEEEEEcc----------------CCCCCccceEeeeCcCCC
Confidence 88888888998751 456666666778999885
No 40
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=30.70 E-value=16 Score=32.86 Aligned_cols=13 Identities=46% Similarity=1.198 Sum_probs=11.2
Q ss_pred CCCCccCcceeee
Q 031186 100 ICPECKGEGFVLK 112 (164)
Q Consensus 100 iCpeC~GeGFV~k 112 (164)
.||.|+|.|+|..
T Consensus 410 ~Cp~C~G~G~v~s 422 (517)
T 2bx2_L 410 VCPRCSGTGTVRD 422 (517)
T ss_dssp CCSSSSSSSCCCC
T ss_pred cCCCcCCceeECC
Confidence 4899999999975
No 41
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=29.92 E-value=18 Score=26.14 Aligned_cols=14 Identities=36% Similarity=1.099 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
..|+|.|.|..|.-
T Consensus 58 ~~C~G~G~CgtC~v 71 (126)
T 3hui_A 58 AECGGACACATCHV 71 (126)
T ss_dssp CTTSSSSCCSTTEE
T ss_pred cCCCCCCCCCCCEE
Confidence 47999999999974
No 42
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=29.65 E-value=20 Score=24.44 Aligned_cols=15 Identities=33% Similarity=0.902 Sum_probs=12.3
Q ss_pred ccCCCCCCCCCccCc
Q 031186 93 EDCGGSGICPECKGE 107 (164)
Q Consensus 93 e~C~GSGiCpeC~Ge 107 (164)
-.|+|.|.|..|.-.
T Consensus 40 ~~C~g~G~CgtC~v~ 54 (113)
T 3ah7_A 40 SACGGVKACTTCHCI 54 (113)
T ss_dssp CTTCSSSSCSTTEEE
T ss_pred cCCCCCCCcCCCEEE
Confidence 369999999999753
No 43
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.00 E-value=54 Score=20.99 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 031186 64 AATVVGAAATLLVRRTKGS 82 (164)
Q Consensus 64 aa~vVGaA~t~L~rr~k~~ 82 (164)
.+.++|..+.+++||.+..
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4455566667777887543
No 44
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.71 E-value=69 Score=20.40 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=6.6
Q ss_pred HHHHHHHHhcCC
Q 031186 70 AAATLLVRRTKG 81 (164)
Q Consensus 70 aA~t~L~rr~k~ 81 (164)
....+++||.+.
T Consensus 28 ~~~~~~~RRRr~ 39 (44)
T 2l2t_A 28 LTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHhhhhhh
Confidence 444556666643
No 45
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.02 E-value=15 Score=27.92 Aligned_cols=44 Identities=36% Similarity=0.878 Sum_probs=32.2
Q ss_pred ccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC---ccccccC-Cccc
Q 031186 89 LKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS---RSCATCG-GRGK 161 (164)
Q Consensus 89 ~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~---r~C~~Cg-G~G~ 161 (164)
...||.|. |-||-|+. ||+-. .+.-.|..||-. ..|..|| |.|.
T Consensus 22 G~lCekcd--GkC~iCDs--~Vrp~-------------------------~~VrICdeCs~G~~~~rCIiCg~~~g~ 69 (109)
T 2k0a_A 22 GLLCEKCD--GKCPICDS--YVRPK-------------------------RKVRVCENCSFGKQAKNCIICNLNVGV 69 (109)
T ss_dssp CEECGGGT--TCCTTTCC--CCCCC-------------------------EECEEEHHHHTSSTTSBCTTTSSSBCC
T ss_pred hhhhhhcC--CcccccCC--ccCCc-------------------------ceEEECCcCCCCCcCCceEEcCCCCCc
Confidence 34688886 67999987 66652 245578888754 6899999 8885
No 46
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=26.90 E-value=1e+02 Score=19.43 Aligned_cols=52 Identities=17% Similarity=0.535 Sum_probs=33.8
Q ss_pred CccccccccccccCCCCC---CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCC
Q 031186 82 SEETEIPLKTCEDCGGSG---ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSS 150 (164)
Q Consensus 82 ~e~~e~~~~~Ce~C~GSG---iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~ 150 (164)
++.++.....|..|+..| +|-.|.. +|=+.=|.+. ...+|+.--||+.|...
T Consensus 2 p~~~d~~~~~C~vC~~~g~ll~Cd~C~~-~fH~~Cl~pp----------------l~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 2 PLGSDHHMEFCRVCKDGGELLCCDTCPS-SYHIHCLNPP----------------LPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp TTCSCSSCSSCTTTCCCSSCBCCSSSCC-CBCSSSSSSC----------------CSSCCSSCCCCTTTTTT
T ss_pred CccccCCCCcCCCCCCCCCEEEcCCCCH-HHcccccCCC----------------cCcCCCCccCChhhcCc
Confidence 345566778899998766 4888885 5766544220 11256666689999765
No 47
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=26.57 E-value=24 Score=23.53 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=11.9
Q ss_pred ccCCCCCCCCCccC
Q 031186 93 EDCGGSGICPECKG 106 (164)
Q Consensus 93 e~C~GSGiCpeC~G 106 (164)
..|+|.|.|.-|.-
T Consensus 39 ~~C~g~G~Cg~C~v 52 (103)
T 2wlb_A 39 GACEGSVACSTCHV 52 (103)
T ss_dssp CTTTTSSCCSTTEE
T ss_pred cCCCCCCCcCCCEE
Confidence 46899999999965
No 48
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.14 E-value=29 Score=28.78 Aligned_cols=7 Identities=43% Similarity=1.108 Sum_probs=4.6
Q ss_pred ccccCCC
Q 031186 91 TCEDCGG 97 (164)
Q Consensus 91 ~Ce~C~G 97 (164)
.|++|++
T Consensus 23 ~Cp~C~~ 29 (345)
T 4bbr_M 23 TCPECKV 29 (345)
T ss_dssp CCSSCCC
T ss_pred cCCCCCC
Confidence 5777765
No 49
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=25.97 E-value=23 Score=27.27 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=11.6
Q ss_pred CCCCCccCcceee
Q 031186 99 GICPECKGEGFVL 111 (164)
Q Consensus 99 GiCpeC~GeGFV~ 111 (164)
++||.|+..||+=
T Consensus 64 DisP~~K~ngY~G 76 (140)
T 2bw2_A 64 DISPLSKVNGYIG 76 (140)
T ss_dssp SCCTGGGTCCCEE
T ss_pred ccChHHhcCceEE
Confidence 8999999999973
No 50
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.76 E-value=55 Score=19.95 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 031186 72 ATLLVRR 78 (164)
Q Consensus 72 ~t~L~rr 78 (164)
..++.||
T Consensus 31 ~~~~~rr 37 (38)
T 2k1k_A 31 LVFRSRR 37 (38)
T ss_dssp HHHHHCC
T ss_pred HHHHeec
Confidence 3344444
No 51
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=25.45 E-value=15 Score=34.00 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=18.2
Q ss_pred cccccccccCCCCC-----------CCCCccCcc
Q 031186 86 EIPLKTCEDCGGSG-----------ICPECKGEG 108 (164)
Q Consensus 86 e~~~~~Ce~C~GSG-----------iCpeC~GeG 108 (164)
-...+.|+.|.|+| .|+.|.|..
T Consensus 188 v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~ 221 (669)
T 3pmq_A 188 LVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK 221 (669)
T ss_dssp CCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred eccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence 44567899997765 499999995
No 52
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=24.38 E-value=26 Score=22.94 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=21.5
Q ss_pred CCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCC
Q 031186 101 CPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSS 149 (164)
Q Consensus 101 CpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~ 149 (164)
|.+|.|.-|+..+ + .|.+...-.--.||+.|.-
T Consensus 14 ct~c~~~~Y~t~K-----------n-----rrn~~~rLelkKycp~~~k 46 (55)
T 2zjr_1 14 SSAGTGFYYTTTK-----------N-----RRNTQAKLELKKYDPVAKK 46 (55)
T ss_pred EcccCCeeEeEcc-----------c-----CCCCCcceEEEccCCCCCC
Confidence 7777778888875 1 3444444455679998853
No 53
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=23.76 E-value=17 Score=24.14 Aligned_cols=43 Identities=23% Similarity=0.604 Sum_probs=26.5
Q ss_pred ccccccCCCCCCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCcc-ccccCCCCCc
Q 031186 89 LKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKW-SYCTKCSSSR 151 (164)
Q Consensus 89 ~~~Ce~C~GSGiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkw-syC~kCS~~r 151 (164)
+..|+.|.. ...+.|.| ++++ .++..+-||... ..|+.|+...
T Consensus 2 mi~c~~c~~-w~H~~c~~-------~~~~------------~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 2 MMQCGKCDR-WVHSKCEN-------LSDE------------MYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCSCCSS-CHHHHHCC-------CCHH------------HHHHHHSSCTTTTCCSSCCTTTS
T ss_pred ccccccCCC-ccCCcccc-------cCHH------------HHHHHhhccccceeeCccccccc
Confidence 567888877 77788865 3333 244455567544 4488887543
No 54
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=23.50 E-value=49 Score=31.29 Aligned_cols=33 Identities=33% Similarity=0.832 Sum_probs=25.2
Q ss_pred CCCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186 99 GICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR 151 (164)
Q Consensus 99 GiCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r 151 (164)
|.|+.|.|.|||...+ .-+|..+..|..|.+.|
T Consensus 714 grc~~c~g~G~i~~e~--------------------~flp~~~v~c~~c~g~r 746 (916)
T 3pih_A 714 GRCEACQGQGYVKIEM--------------------LFLPDVYVECDVCKGKR 746 (916)
T ss_dssp TBCTTTTTSSEEEECC--------------------TTSCCEEEECTTTTTSC
T ss_pred cccccccCcceEEEee--------------------eccCcceeecccccccc
Confidence 6799999999998743 13588888888887754
No 55
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=23.40 E-value=25 Score=31.58 Aligned_cols=12 Identities=33% Similarity=1.055 Sum_probs=9.3
Q ss_pred ccccccCCcccc
Q 031186 151 RSCATCGGRGKL 162 (164)
Q Consensus 151 r~C~~CgG~G~l 162 (164)
..|++|+|+|.+
T Consensus 409 ~~Cp~C~G~G~v 420 (517)
T 2bx2_L 409 HVCPRCSGTGTV 420 (517)
T ss_dssp CCCSSSSSSSCC
T ss_pred CcCCCcCCceeE
Confidence 468888888865
No 56
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.06 E-value=32 Score=26.90 Aligned_cols=20 Identities=25% Similarity=0.735 Sum_probs=16.1
Q ss_pred ccccccCCCCC--------ccccccCCc
Q 031186 140 KWSYCTKCSSS--------RSCATCGGR 159 (164)
Q Consensus 140 kwsyC~kCS~~--------r~C~~CgG~ 159 (164)
.--.||+|++. -.|+.|+.+
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred cCCCCCCCCCcceEecCCeEECCccccc
Confidence 34679999997 689999865
No 57
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=23.00 E-value=71 Score=20.89 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=31.2
Q ss_pred ccccccccCCCCC---CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCCCccccccCCCCCc
Q 031186 87 IPLKTCEDCGGSG---ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLPKKWSYCTKCSSSR 151 (164)
Q Consensus 87 ~~~~~Ce~C~GSG---iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlpkkwsyC~kCS~~r 151 (164)
.+...|..|+..| +|-.|+ .+|=+.=|.+. ..-.|+.--||+.|++.+
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~-~~~H~~Cl~P~----------------l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCA-AAFHWRCHFPA----------------GTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSC-CEECHHHHCTT----------------TCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCCeEEECCCCC-CceecccCCCc----------------cCcCCCCCEECccccCCC
Confidence 4456799998777 498887 56766543111 123566666899998753
No 58
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.82 E-value=73 Score=21.03 Aligned_cols=18 Identities=28% Similarity=0.888 Sum_probs=15.6
Q ss_pred ccccccCCCCC----ccccccC
Q 031186 140 KWSYCTKCSSS----RSCATCG 157 (164)
Q Consensus 140 kwsyC~kCS~~----r~C~~Cg 157 (164)
.-..|+.|... +.|+.||
T Consensus 29 ~l~~c~~cGe~~~~H~vc~~CG 50 (60)
T 3v2d_5 29 TLVPCPECKAMKPPHTVCPECG 50 (60)
T ss_dssp CCEECTTTCCEECTTSCCTTTC
T ss_pred ceeECCCCCCeecceEEcCCCC
Confidence 47899999876 8899998
No 59
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=22.17 E-value=98 Score=22.33 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=19.2
Q ss_pred CCCCccCcceeeeccCHHHHHHHHHHhhhhhhhhhcCCC
Q 031186 100 ICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAGLP 138 (164)
Q Consensus 100 iCpeC~GeGFV~k~ls~~~A~kAr~~AKnmAtRytaGlp 138 (164)
.||.|+|+=.+ +.++.-++...+-++..-|...|.|
T Consensus 10 aCP~cK~pL~l---~~~~~~~~~~ca~~~~~~~~~~~~~ 45 (97)
T 2k5r_A 10 CSPDTRQPLSL---LESKGLEALNKAIVSGTVQRADGSI 45 (97)
T ss_dssp CCCTTSSCCEE---CCHHHHHHHHHHHHHTCCBCTTSCB
T ss_pred ECCCCCCcccc---cccchhhhhhhhhhccccccccccc
Confidence 49999995433 3333334444444444545555543
No 60
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.55 E-value=38 Score=22.81 Aligned_cols=20 Identities=30% Similarity=0.881 Sum_probs=15.1
Q ss_pred ccccccCCCCC---ccccccCCc
Q 031186 140 KWSYCTKCSSS---RSCATCGGR 159 (164)
Q Consensus 140 kwsyC~kCS~~---r~C~~CgG~ 159 (164)
+-..|++|.-. ..|+.||+.
T Consensus 5 ~mr~C~~CgvYTLk~~CP~CG~~ 27 (60)
T 2apo_B 5 RMKKCPKCGLYTLKEICPKCGEK 27 (60)
T ss_dssp CCEECTTTCCEESSSBCSSSCSB
T ss_pred hceeCCCCCCEeccccCcCCCCc
Confidence 34679999765 679999975
No 61
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.72 E-value=32 Score=24.97 Aligned_cols=21 Identities=38% Similarity=1.197 Sum_probs=15.5
Q ss_pred Ccccc-ccCCCCC-------ccccccCCc
Q 031186 139 KKWSY-CTKCSSS-------RSCATCGGR 159 (164)
Q Consensus 139 kkwsy-C~kCS~~-------r~C~~CgG~ 159 (164)
+.|.| |..|.-. ..|+.||+.
T Consensus 129 ~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp CCCCEEESSSCCEESSCCGGGBCTTTCCB
T ss_pred ccEEEECCCCCCcccCCCCCCcCCCCCCc
Confidence 45554 9999854 369999985
No 62
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=20.25 E-value=87 Score=21.49 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=7.1
Q ss_pred ccccccCCCCC
Q 031186 89 LKTCEDCGGSG 99 (164)
Q Consensus 89 ~~~Ce~C~GSG 99 (164)
...|--|+..|
T Consensus 5 ~~~C~~Cg~~G 15 (83)
T 3nyb_B 5 KVQCTLCKSKK 15 (83)
T ss_dssp --CCSSSCCSS
T ss_pred cCCCCCCCCCC
Confidence 45688888777
No 63
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=20.20 E-value=29 Score=26.12 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=10.5
Q ss_pred CCCccCcceeeec
Q 031186 101 CPECKGEGFVLKK 113 (164)
Q Consensus 101 CpeC~GeGFV~k~ 113 (164)
|+.|+|.|++.+.
T Consensus 30 c~~c~G~g~~~~~ 42 (181)
T 3agx_A 30 RLNPDGKSIRNED 42 (181)
T ss_dssp EECTTSSCEEEEE
T ss_pred cCCCCCceEEEEe
Confidence 7889999998763
Done!