BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031188
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex
Aeolicus: Northeast Structural Genomics Consortium
Target Qr6
Length = 124
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 57 MTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKL 116
+TD ++ +K++ A E + +LR+ V GGCSGFQYA D + D +FE DGVK+
Sbjct: 12 VTDKAVEEIKKV-AQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKV 70
Query: 117 VVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160
V+D S +V GA +DYV + + F + NP+A G C C SSF
Sbjct: 71 VIDPFSMPYVNGAELDYVVDFMGGGFTIR-NPNATGSCGCGSSF 113
>pdb|2APN|A Chain A, Hi1723 Solution Structure
Length = 114
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114
+ TD ++K L SE + LR+ + GGCSGFQY F D K+N D EK GV
Sbjct: 9 LTFTDAAANKVKSL-ISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGV 67
Query: 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
+LV+D +S ++ G TVDY E L S F V+ NP+A C C SSF +
Sbjct: 68 QLVIDPMSLQYLIGGTVDYTEGLEGSRFTVN-NPNATSTCGCGSSFSI 114
>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A
pdb|1S98|B Chain B, E.Coli Isca Crystal Structure To 2.3 A
Length = 107
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
SI ++D+ R+ A+ LRLGV T GCSG Y + + P+D +FE G
Sbjct: 2 SITLSDSAAARVNTFLANRGKGFG--LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
VK+VVD S F+ G +D+V+E + F TNP+ C C SF V
Sbjct: 60 VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKF-TNPNVKDECGCGESFHV 107
>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative)
pdb|1R94|B Chain B, Crystal Structure Of Isca (mercury Derivative)
pdb|1R95|A Chain A, Crystal Structure Of Isca (Native)
pdb|1R95|B Chain B, Crystal Structure Of Isca (Native)
Length = 118
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
SI ++D+ R+ A+ LRLGV T GCSG Y + + P+D +FE G
Sbjct: 2 SITLSDSAAARVNTFLANRGKGFG--LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160
VK+VVD S F+ G +D+V+E + F TNP+ C C SF
Sbjct: 60 VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKF-TNPNVKDECGCGESF 105
>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
pdb|2D2A|B Chain B, Crystal Structure Of Escherichia Coli Sufa Involved In
Biosynthesis Of Iron-Sulfur Clusters
Length = 145
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 64 RMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISY 123
++EL A + +RLGV+ GC+GF Y D + + DD +FE DG KL V +
Sbjct: 50 HIRELVAKQPG--MVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAM 107
Query: 124 DFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162
F+ G VD+V E + F NP A C C SF V
Sbjct: 108 PFIDGTEVDFVREGLNQIFKFH-NPKAQNECGCGESFGV 145
>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|B Chain B, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|C Chain C, Crystal Structure Of Isca With The [2fe-2s] Cluster
pdb|1X0G|D Chain D, Crystal Structure Of Isca With The [2fe-2s] Cluster
Length = 112
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 55 IHMTDNFIKRMKELQASETSDNKA-MLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDG 113
+ +T I+ ++ LQ +A +LR+ V+ C ++Y L + P D + + G
Sbjct: 2 VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61
Query: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMVKQ 164
+ + + + ++G VDY+E+L+ AF NP+A C C +F V +
Sbjct: 62 WTIAIAAEAAELLRGLRVDYIEDLMGGAFRFH-NPNASQTCGCGMAFRVSR 111
>pdb|3NPL|A Chain A, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
pdb|3NPL|B Chain B, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
Length = 470
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 60 NFIKRMKELQASETSD-NKAMLRLGVETGGCSGFQYAFDLDYKINP 104
+++ + L A E + + M RL ++T G SGF Y F+ Y+ P
Sbjct: 126 QLVQKWERLNADEHIEVPEDMTRLTLDTIGLSGFNYRFNSFYRDQP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,668,240
Number of Sequences: 62578
Number of extensions: 128965
Number of successful extensions: 333
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 8
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)