Query 031188
Match_columns 164
No_of_seqs 164 out of 1205
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03082 Iron-sulfur cluster a 100.0 2E-46 4.3E-51 292.1 11.9 159 1-163 5-163 (163)
2 COG0316 sufA Fe-S cluster asse 100.0 6.9E-38 1.5E-42 229.8 13.1 109 52-162 2-110 (110)
3 PRK09502 iscA iron-sulfur clus 100.0 5.9E-37 1.3E-41 223.8 12.7 107 53-162 1-107 (107)
4 PRK13623 iron-sulfur cluster i 100.0 7.4E-37 1.6E-41 225.6 13.1 109 52-162 7-115 (115)
5 PRK09504 sufA iron-sulfur clus 100.0 3.2E-36 6.9E-41 224.8 12.7 109 51-162 14-122 (122)
6 TIGR02011 IscA iron-sulfur clu 100.0 1.4E-35 3.1E-40 215.7 12.4 105 55-162 1-105 (105)
7 TIGR01997 sufA_proteo FeS asse 100.0 3.7E-35 8E-40 214.2 12.8 105 54-161 2-106 (107)
8 KOG1119 Mitochondrial Fe-S clu 100.0 8.7E-35 1.9E-39 227.2 11.1 154 2-163 45-198 (199)
9 TIGR00049 Iron-sulfur cluster 100.0 1.3E-33 2.9E-38 204.3 12.2 105 56-162 1-105 (105)
10 KOG1120 Fe-S cluster biosynthe 100.0 1.5E-32 3.1E-37 203.5 10.7 125 35-162 10-134 (134)
11 PRK11190 Fe/S biogenesis prote 99.9 1.8E-26 3.9E-31 184.2 12.2 96 54-152 1-98 (192)
12 TIGR01911 HesB_rel_seleno HesB 99.9 1.4E-26 3E-31 165.2 10.1 89 54-144 3-91 (92)
13 TIGR03341 YhgI_GntY IscR-regul 99.9 3E-25 6.4E-30 177.0 12.1 95 55-152 1-97 (190)
14 PF01521 Fe-S_biosyn: Iron-sul 99.9 3.8E-24 8.2E-29 156.1 9.0 101 53-158 1-112 (112)
15 COG4841 Uncharacterized protei 99.7 1.5E-16 3.3E-21 111.4 8.2 88 53-144 1-94 (95)
16 COG4918 Uncharacterized protei 98.7 2.9E-08 6.3E-13 71.6 6.4 84 53-137 1-86 (114)
17 COG3564 Uncharacterized protei 97.0 0.0065 1.4E-07 43.9 8.2 89 53-149 5-99 (116)
18 PF05610 DUF779: Protein of un 96.0 0.051 1.1E-06 39.0 7.5 68 82-151 14-87 (95)
19 COG5134 Uncharacterized conser 58.1 28 0.0006 28.9 5.3 56 62-120 58-113 (272)
20 KOG0633 Histidinol phosphate a 44.3 22 0.00049 30.6 2.8 51 53-109 314-368 (375)
21 cd03063 TRX_Fd_FDH_beta TRX-li 41.2 36 0.00079 24.0 3.2 28 59-92 17-44 (92)
22 cd01234 PH_CADPS CADPS (Ca2+-d 39.3 22 0.00047 26.3 1.8 18 120-137 46-63 (117)
23 cd04482 RPA2_OBF_like RPA2_OBF 38.7 1.1E+02 0.0024 21.1 5.3 19 100-118 46-64 (91)
24 PF03852 Vsr: DNA mismatch end 34.3 41 0.00089 23.1 2.4 33 91-123 35-67 (75)
25 KOG4777 Aspartate-semialdehyde 33.8 34 0.00073 29.4 2.3 90 53-149 54-151 (361)
26 COG1909 Uncharacterized protei 32.9 62 0.0013 25.5 3.5 28 56-88 90-117 (167)
27 COG4647 AcxC Acetone carboxyla 32.5 21 0.00047 27.3 0.9 19 142-161 61-80 (165)
28 PF14135 DUF4302: Domain of un 32.0 1.1E+02 0.0025 24.7 5.2 41 59-101 15-56 (235)
29 PF10571 UPF0547: Uncharacteri 28.9 32 0.0007 18.6 1.0 14 148-161 11-25 (26)
30 KOG3348 BolA (bacterial stress 28.5 2E+02 0.0042 20.3 5.0 38 61-101 4-41 (85)
31 PF11858 DUF3378: Domain of un 27.5 93 0.002 21.4 3.3 38 53-90 3-41 (81)
32 PF04019 DUF359: Protein of un 25.7 95 0.0021 23.0 3.3 27 56-87 45-71 (121)
33 PRK01160 hypothetical protein; 24.4 1E+02 0.0022 24.5 3.4 30 56-87 95-124 (178)
34 PF15643 Tox-PL-2: Papain fold 24.2 1.3E+02 0.0029 21.7 3.7 54 58-118 21-74 (100)
35 PF10008 DUF2251: Uncharacteri 22.7 3E+02 0.0065 19.8 6.8 79 78-161 10-95 (97)
36 PHA02681 ORF089 virion membran 22.3 58 0.0013 22.9 1.5 11 16-26 56-66 (92)
37 TIGR02588 conserved hypothetic 22.1 2.8E+02 0.006 20.8 5.2 24 127-150 84-109 (122)
38 COG1395 Predicted transcriptio 21.8 2.9E+02 0.0063 24.0 5.9 72 56-144 52-123 (313)
39 COG3369 Zinc finger domain con 21.4 34 0.00073 23.7 0.2 9 153-161 33-41 (78)
40 TIGR03829 YokU_near_AblA uncha 21.4 1.3E+02 0.0028 21.3 3.1 22 139-161 24-46 (89)
41 COG0608 RecJ Single-stranded D 20.6 2.8E+02 0.0061 25.0 5.9 103 53-161 17-157 (491)
No 1
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=100.00 E-value=2e-46 Score=292.12 Aligned_cols=159 Identities=77% Similarity=1.125 Sum_probs=132.1
Q ss_pred CchhhhhhhhhHHHHHHhhhcccccCCccccccccccCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHHHhccCCCCCceE
Q 031188 1 MSRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAML 80 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~A~~~lk~ll~~~~~~~~~~L 80 (164)
++|+|++|++|++++|+|++||+|.+++++.......+++.| ......+.|+|||+|+++|++++++++..++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~I~lTd~A~~~ik~l~~~~~~~~~~~L 80 (163)
T PLN03082 5 MSRSLLRRVAPLLAGRIRQNHRLLNFSSSSALKEASTSSSSP----SSSASLDAVHMTDNCIRRLKELQTSEPSAEDKML 80 (163)
T ss_pred cchhhhhccccceeecccchhhHHHhhhhhhhhhhcccccCc----cccccCCceEECHHHHHHHHHHHHhCCCCCCceE
Confidence 589999999999999999999999763222111111111111 1111236799999999999999988653235789
Q ss_pred EEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEeeecCccceEEEccCCCCCCCCCCCCCC
Q 031188 81 RLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160 (164)
Q Consensus 81 Rl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~SF 160 (164)
||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||++++++++|+|.+|||++++||||+||
T Consensus 81 Rl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f~~NPna~~~CgCG~SF 160 (163)
T PLN03082 81 RLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160 (163)
T ss_pred EEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEEEeecCCCCCeeEEecCCCCCCCcCCCCCE
Confidence 99999999999999999999888999999999999999999999999999999999999999975699999999999999
Q ss_pred ccC
Q 031188 161 MVK 163 (164)
Q Consensus 161 ~~~ 163 (164)
.+|
T Consensus 161 ~vk 163 (163)
T PLN03082 161 MVK 163 (163)
T ss_pred eCC
Confidence 986
No 2
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-38 Score=229.76 Aligned_cols=109 Identities=47% Similarity=0.811 Sum_probs=104.3
Q ss_pred CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188 52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (164)
Q Consensus 52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI 131 (164)
.++|+|||+|++++++++.+++. ++.+|||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.++.||+|++|
T Consensus 2 ~~~itlT~~Aa~~v~~ll~~~~~-~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~I 80 (110)
T COG0316 2 AMMITLTDAAAARVKALLAKEGE-ENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEI 80 (110)
T ss_pred CCceeeCHHHHHHHHHHHHhccC-CCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEE
Confidence 37999999999999999999863 57899999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
||+++++|++|+| +|||++..||||+||.+
T Consensus 81 Dyv~~~~g~~F~~-~NPNA~~~CgCg~Sf~v 110 (110)
T COG0316 81 DYVEDLLGSGFTF-KNPNAKSSCGCGESFSV 110 (110)
T ss_pred EEEEcCcCCceEE-ECCCCCccccCCCCCCC
Confidence 9999999999999 99999999999999974
No 3
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=223.77 Aligned_cols=107 Identities=38% Similarity=0.680 Sum_probs=101.0
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID 132 (164)
|+|+|||+|+++|++++++++ .+.+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++||
T Consensus 1 m~i~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~ID 78 (107)
T PRK09502 1 MSITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD 78 (107)
T ss_pred CeEEECHHHHHHHHHHHhCcC--CCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEE
Confidence 679999999999999998764 356899999999999999999998889999999999999999999999999999999
Q ss_pred eeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
|++++.+++|+| +|||++++||||+||.+
T Consensus 79 y~~~~~~~~F~f-~NPna~~~CgCG~Sf~~ 107 (107)
T PRK09502 79 FVKEGLNEGFKF-TNPNVKDECGCGESFHV 107 (107)
T ss_pred EeeCCCCceEEE-ECCCCCCccCCCCCeeC
Confidence 999999999999 99999999999999974
No 4
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=100.00 E-value=7.4e-37 Score=225.62 Aligned_cols=109 Identities=44% Similarity=0.718 Sum_probs=102.3
Q ss_pred CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188 52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (164)
Q Consensus 52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI 131 (164)
.|+|+||++|+++|+++++.++. ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++|
T Consensus 7 ~~~i~iT~~A~~~i~~~~~~~~~-~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~I 85 (115)
T PRK13623 7 PLPLVFTDAAAAKVKELIEEEGN-PDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEV 85 (115)
T ss_pred CcceEECHHHHHHHHHHHhhCCC-CceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEE
Confidence 48999999999999999977652 35679999999999999999999998899999999999999999999999999999
Q ss_pred EeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
||++++.+++|+| +|||++.+||||+||.+
T Consensus 86 Dy~~~~~~~~F~f-~NPn~~~~CgCg~SF~~ 115 (115)
T PRK13623 86 DYTEGLEGSRFVI-KNPNAKTTCGCGSSFSI 115 (115)
T ss_pred EeecCCCcceEEE-ECCCCCcCCCCCcCccC
Confidence 9999999999999 99999999999999974
No 5
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=224.85 Aligned_cols=109 Identities=36% Similarity=0.621 Sum_probs=102.8
Q ss_pred CCCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcE
Q 031188 51 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGAT 130 (164)
Q Consensus 51 ~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~t 130 (164)
.||+|+|||+|+++|++++++++ ...+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++
T Consensus 14 ~~~~I~iT~~A~~~i~~l~~~~~--~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~ 91 (122)
T PRK09504 14 AWQGLTLTPAAAAHIRELMAKQP--GMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTE 91 (122)
T ss_pred CcCCEEECHHHHHHHHHHHhcCC--CCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcE
Confidence 46999999999999999998764 3468999999999999999999999899999999999999999999999999999
Q ss_pred EEeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 131 VDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 131 IDy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
|||++++.+++|+| .|||+.++||||+||.+
T Consensus 92 IDy~~~~~~~gF~f-~NPna~~~CgCG~SF~v 122 (122)
T PRK09504 92 VDYVREGLNQIFKF-HNPKAQNECGCGESFGV 122 (122)
T ss_pred EEeecCCCcceEEE-ECCCCCCCcCCCCCeeC
Confidence 99999999999999 99999999999999974
No 6
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=100.00 E-value=1.4e-35 Score=215.66 Aligned_cols=105 Identities=38% Similarity=0.703 Sum_probs=99.4
Q ss_pred eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEee
Q 031188 55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYV 134 (164)
Q Consensus 55 ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~ 134 (164)
|+||++|+++|++++++++ ++.+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus 1 I~iT~~A~~~i~~~~~~~~--~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~ 78 (105)
T TIGR02011 1 ITLTDSAAARVNTFLANRG--KGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFV 78 (105)
T ss_pred CEECHHHHHHHHHHHhccC--CCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEe
Confidence 6899999999999998764 35689999999999999999999888999999999999999999999999999999999
Q ss_pred ecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 135 EELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 135 e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
+++++++|+| +|||++++||||+||.+
T Consensus 79 ~~~~~~~F~~-~nPna~~~CgCg~Sf~~ 105 (105)
T TIGR02011 79 KEGLNEGFKF-TNPNVKDECGCGESFHV 105 (105)
T ss_pred cCCCcceEEE-ECCCCCccCCCCCCccC
Confidence 9999999999 99999999999999974
No 7
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=100.00 E-value=3.7e-35 Score=214.17 Aligned_cols=105 Identities=35% Similarity=0.641 Sum_probs=99.9
Q ss_pred eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEe
Q 031188 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY 133 (164)
Q Consensus 54 ~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy 133 (164)
+|+|||+|+++|++++++++ +..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus 2 ~i~iT~~A~~~i~~l~~~~~--~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy 79 (107)
T TIGR01997 2 VITLTDAAAIHIRELVAKRP--EAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDF 79 (107)
T ss_pred eEEECHHHHHHHHHHHhcCC--CCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEE
Confidence 69999999999999998765 3468999999999999999999988899999999999999999999999999999999
Q ss_pred eecCccceEEEccCCCCCCCCCCCCCCc
Q 031188 134 VEELIRSAFVVSTNPSAVGGCSCKSSFM 161 (164)
Q Consensus 134 ~e~~~g~gF~i~~nPn~~~~CgCG~SF~ 161 (164)
++++.+++|+| +|||++.+||||+||.
T Consensus 80 ~~~~~~~~F~~-~NPn~~~~CgCG~Sf~ 106 (107)
T TIGR01997 80 VRTTLRQGFKF-NNPNATSACGCGESFE 106 (107)
T ss_pred EEcCCcceEEE-ECCCCCCccCCCCCcc
Confidence 99999999999 9999999999999996
No 8
>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-35 Score=227.18 Aligned_cols=154 Identities=47% Similarity=0.709 Sum_probs=129.5
Q ss_pred chhhhhhhhhHHHHHHhhhcccccCCccccccccccCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHHHhccCCCCCceEE
Q 031188 2 SRSLIQRLAPYFAARLRQNHRLLSSSPSSAAAALNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLR 81 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LR 81 (164)
.+++.+++++++..+++++|+..-. .+++.+-.++++++.....+|+ -.+.|+|.|.++|+|+..... ..||
T Consensus 45 ~~~~~~~~T~~~~~~l~e~~~~~~f---~s~~~~ke~~ss~~~~~e~~~~-~~~~lsds~~krl~EI~~~~p----e~LR 116 (199)
T KOG1119|consen 45 RRSFRRTVTTLAQFPLTELFIKKAF---YSASATKEAFSSSSRIPEKSPG-FNLHLSDSCSKRLKEIYENSP----EFLR 116 (199)
T ss_pred HHhhhchhhhhhhhhhHHHHHHhhh---ccHHHHhhhhcCcccCCccCCC-ceEEehhHHHHHHHHHHhCCc----ceEE
Confidence 4567788888888888877776633 3334444444443333333333 589999999999999998762 6899
Q ss_pred EEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEeeecCccceEEEccCCCCCCCCCCCCCCc
Q 031188 82 LGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFM 161 (164)
Q Consensus 82 l~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~SF~ 161 (164)
|.|++|||+||||.|.+|...++||.+++.+|.+|+||..++.|++|+||||.+|+++++|+|+.||.++.+||||+||+
T Consensus 117 l~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~ELIrSsF~ivnNP~A~~gCsCgSSF~ 196 (199)
T KOG1119|consen 117 LTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNELIRSSFRIVNNPSAKQGCSCGSSFD 196 (199)
T ss_pred EEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHHHhhhhheeecCcccccCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred cC
Q 031188 162 VK 163 (164)
Q Consensus 162 ~~ 163 (164)
+|
T Consensus 197 ik 198 (199)
T KOG1119|consen 197 IK 198 (199)
T ss_pred cC
Confidence 87
No 9
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=100.00 E-value=1.3e-33 Score=204.28 Aligned_cols=105 Identities=50% Similarity=0.850 Sum_probs=98.9
Q ss_pred eeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEeee
Q 031188 56 HMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVE 135 (164)
Q Consensus 56 tIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~e 135 (164)
+||++|+++|++++++++. ++.+|||+++.+||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++|||++
T Consensus 1 ~iT~~A~~~l~~~~~~~~~-~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~ 79 (105)
T TIGR00049 1 TLTDSAAKRIKALLAGEGE-PNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVE 79 (105)
T ss_pred CcCHHHHHHHHHHHhcCCC-CceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEee
Confidence 5899999999999988753 357899999999999999999999888999999999999999999999999999999999
Q ss_pred cCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 136 ELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 136 ~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
+..+++|+| .|||+.+.||||+||++
T Consensus 80 ~~~~~~f~i-~nPn~~~~c~cg~sf~~ 105 (105)
T TIGR00049 80 ELLGSGFTF-TNPNAKGTCGCGKSFSV 105 (105)
T ss_pred cCCcceEEE-ECCCCCccCCCCcCccC
Confidence 999999999 89999999999999974
No 10
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=203.53 Aligned_cols=125 Identities=27% Similarity=0.585 Sum_probs=114.8
Q ss_pred cccCCCCCCCCCCCCCCCCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCe
Q 031188 35 LNEASSSPSSSESPSPSLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGV 114 (164)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi 114 (164)
+...+++....++..|.+..|++||.|+++|++++++++ +...|||.|+..||+|+.|.|.+.+++...|++++.||+
T Consensus 10 ~s~~~~~~~a~~~~~~~k~~ltLTp~Av~~ik~ll~~~~--e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv 87 (134)
T KOG1120|consen 10 LSPRNARAPAARKLAPRKAALTLTPSAVNHIKQLLSDKP--EDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGV 87 (134)
T ss_pred cccccccccccccccccccccccCHHHHHHHHHHHHhCC--cCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCc
Confidence 344555566667777888999999999999999999874 578999999999999999999999999999999999999
Q ss_pred EEEEcCCcccccCCcEEEeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 115 KLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 115 ~v~VD~~s~~~L~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
+|+||+++...+-|+++||+++.++++|+| .|||+++.||||+||++
T Consensus 88 ~I~ie~KA~l~liGteMDyvddkL~Sefvf-~npna~gtcGcgeSf~~ 134 (134)
T KOG1120|consen 88 RIFIEPKALLTLIGTEMDYVDDKLSSEFVF-SNPNAKGTCGCGESFSV 134 (134)
T ss_pred EEEEcccceeeeccceehhhhhhhcCceEe-eCCCccccccccccccC
Confidence 999999999999999999999999999999 89999999999999974
No 11
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=99.94 E-value=1.8e-26 Score=184.23 Aligned_cols=96 Identities=21% Similarity=0.320 Sum_probs=90.0
Q ss_pred eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEee--cCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (164)
Q Consensus 54 ~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI 131 (164)
||+|||+|+++|++++++++ .+.+|||+|+++||+|++|+|.| +++++++|.+++.+|++|+||+.++.||+|++|
T Consensus 1 ~i~iTd~A~~~i~~ll~~~~--~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~I 78 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQE--EGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEI 78 (192)
T ss_pred CcEECHHHHHHHHHHHhcCC--CCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEE
Confidence 68999999999999998765 34689999999999999999999 677889999999999999999999999999999
Q ss_pred EeeecCccceEEEccCCCCCC
Q 031188 132 DYVEELIRSAFVVSTNPSAVG 152 (164)
Q Consensus 132 Dy~e~~~g~gF~i~~nPn~~~ 152 (164)
||++++++++|+| +|||++.
T Consensus 79 Dyve~~~g~gF~f-~NPNa~~ 98 (192)
T PRK11190 79 DFVTDQLGSQLTL-KAPNAKM 98 (192)
T ss_pred EEeecCCCCceEE-ECCCCCC
Confidence 9999999999999 9999975
No 12
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=99.94 E-value=1.4e-26 Score=165.20 Aligned_cols=89 Identities=18% Similarity=0.326 Sum_probs=83.1
Q ss_pred eeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEe
Q 031188 54 SIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDY 133 (164)
Q Consensus 54 ~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy 133 (164)
||+|||+|+++|++++++++. +..+|||+|+++||+||+|.|.+++ ++++|.+++.+|++|+||+.++.||+|++|||
T Consensus 3 ~i~lT~~A~~~i~~ll~~~~~-~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy 80 (92)
T TIGR01911 3 IVAMSDDAYEEFKDFLKENDI-DNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC 80 (92)
T ss_pred ceEECHHHHHHHHHHHHhCCC-CCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence 799999999999999987753 2357999999999999999999987 58999999999999999999999999999999
Q ss_pred eecCccceEEE
Q 031188 134 VEELIRSAFVV 144 (164)
Q Consensus 134 ~e~~~g~gF~i 144 (164)
++++.+++|+|
T Consensus 81 ~~~~~g~gF~~ 91 (92)
T TIGR01911 81 AEENFGAGFSL 91 (92)
T ss_pred ecCCCCCcEEe
Confidence 99999999997
No 13
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=99.93 E-value=3e-25 Score=177.03 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=88.5
Q ss_pred eeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEee--cCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188 55 IHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDL--DYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (164)
Q Consensus 55 ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l--~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID 132 (164)
|+||++|+++|++++++++ .+.+|||+|+++||+||+|+|.| +++++++|.+++.+|++|+||+.++.||+|++||
T Consensus 1 I~IT~~A~~~l~~ll~~~~--~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~ID 78 (190)
T TIGR03341 1 ITITEAAQAYLAKLLAKQN--EGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVID 78 (190)
T ss_pred CEECHHHHHHHHHHHhhCC--CCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEE
Confidence 6899999999999998765 35689999999999999999999 5678899999999999999999999999999999
Q ss_pred eeecCccceEEEccCCCCCC
Q 031188 133 YVEELIRSAFVVSTNPSAVG 152 (164)
Q Consensus 133 y~e~~~g~gF~i~~nPn~~~ 152 (164)
|++++++++|+| +|||++.
T Consensus 79 yve~~~g~gF~f-~NPna~~ 97 (190)
T TIGR03341 79 FVTDRMGGQLTL-KAPNAKM 97 (190)
T ss_pred EeecCCCceeEE-eCCccCC
Confidence 999999999999 9999874
No 14
>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein. They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.
Probab=99.91 E-value=3.8e-24 Score=156.09 Aligned_cols=101 Identities=36% Similarity=0.621 Sum_probs=93.2
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCC--------CC-CeEEEEeecCCC-CCCceEEEeCCeEEEEcCCc
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGG--------CS-GFQYAFDLDYKI-NPDDRIFEKDGVKLVVDNIS 122 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~G--------Cs-G~~y~l~l~~~~-~~dD~v~e~~Gi~v~VD~~s 122 (164)
|.|+||++|+++|++++.+++ .. |||+++.+| |+ |++|.|.+++++ +++|.+++.+|++|+||+.+
T Consensus 1 M~I~iT~~A~~~l~~~~~~~~---~~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~ 76 (112)
T PF01521_consen 1 MKITITDAAAERLKQLLKEDP---KK-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYS 76 (112)
T ss_dssp -EEEE-HHHHHHHHHHHHCTT---ES-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGG
T ss_pred CEEEECHHHHHHHHHHHhcCC---CE-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccH
Confidence 899999999999999999875 22 999999999 99 999999999877 89999999999999999999
Q ss_pred cccc-CCcEEEeeecCccceEEEccCCCCCCCCCCCC
Q 031188 123 YDFV-KGATVDYVEELIRSAFVVSTNPSAVGGCSCKS 158 (164)
Q Consensus 123 ~~~L-~g~tIDy~e~~~g~gF~i~~nPn~~~~CgCG~ 158 (164)
.+|| +|++|||+++..+.+|++ .||+..+.|+||.
T Consensus 77 ~~~l~~~~~iD~~~~~~~~~f~~-~~~~~~~~~~~~~ 112 (112)
T PF01521_consen 77 LWYLDEGLTIDYVEDLGGFGFKS-DNPNLDSNCGCGD 112 (112)
T ss_dssp HHHH-TTEEEEEEEETTEEEEEE-ETTTEEEEECECE
T ss_pred hhhhhCCCEEEEEEccCccEEEE-CCCCcCceeccCC
Confidence 9999 999999999999999998 9999999999984
No 15
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.68 E-value=1.5e-16 Score=111.40 Aligned_cols=88 Identities=25% Similarity=0.333 Sum_probs=75.2
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCC----CeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCC
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCS----GFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG 128 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCs----G~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g 128 (164)
|+|+||+.|.+|+++.+..++ |..||++++.|||+ ||+.++.-+. |++--...+.+|++|||+..++||+++
T Consensus 1 Mni~vtd~A~~wfk~E~~l~~---g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d 76 (95)
T COG4841 1 MNIEVTDQALKWFKEELDLEE---GNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDD 76 (95)
T ss_pred CceEEcHHHHHHHHHhcCCCC---CCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcC
Confidence 789999999999999998874 78899999999997 6666665443 666555667899999999999999998
Q ss_pred --cEEEeeecCccceEEE
Q 031188 129 --ATVDYVEELIRSAFVV 144 (164)
Q Consensus 129 --~tIDy~e~~~g~gF~i 144 (164)
.+|||.++.....|..
T Consensus 77 ~d~~v~y~~~~Dei~fs~ 94 (95)
T COG4841 77 HDLKVDYSPDTDEISFSY 94 (95)
T ss_pred CcEEEeccCCCCcceeec
Confidence 8999999988888864
No 16
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.74 E-value=2.9e-08 Score=71.62 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=63.3
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCC-eEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCC-cE
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSG-FQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG-AT 130 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG-~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g-~t 130 (164)
|.|++||+|+++|+........ ....++...++.||.| -.+.+++..+.+..|..++.++.+|+|-....-||++ ++
T Consensus 1 M~Itftd~a~~~l~~a~d~nl~-~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mt 79 (114)
T COG4918 1 MKITFTDKAADKLKAAGDVNLV-FDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMT 79 (114)
T ss_pred CeEEecHHHHHHHHHhhccCcC-ccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceee
Confidence 7899999999999987766532 1234554444455533 2367777776678899999999999999988888886 89
Q ss_pred EEeeecC
Q 031188 131 VDYVEEL 137 (164)
Q Consensus 131 IDy~e~~ 137 (164)
|||.+..
T Consensus 80 idyN~~~ 86 (114)
T COG4918 80 IDYNPSY 86 (114)
T ss_pred eecCCcc
Confidence 9999764
No 17
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.0065 Score=43.90 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=62.0
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecC---CCCCCceEE-EeCCeEEEEcCCcccccCC
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG 128 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~g 128 (164)
..++.|++|+.-|.++..+.+. -++-..+||..-+--|-+.. -..+.|+.. +++|++|||....+.+-+-
T Consensus 5 ~~V~aT~aAl~Li~~l~~~hgp------vmFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKH 78 (116)
T COG3564 5 ARVLATPAALDLIAELQAEHGP------VMFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKH 78 (116)
T ss_pred cceecCHHHHHHHHHHHHhcCC------EEEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhc
Confidence 4789999999999999988751 34556788852122232211 123456544 6899999999999988775
Q ss_pred --cEEEeeecCccceEEEccCCC
Q 031188 129 --ATVDYVEELIRSAFVVSTNPS 149 (164)
Q Consensus 129 --~tIDy~e~~~g~gF~i~~nPn 149 (164)
+.||.+.. -|..|.+ +|-.
T Consensus 79 TqLIIDVVpG-RGGmFSL-dng~ 99 (116)
T COG3564 79 TQLIIDVVPG-RGGMFSL-DNGR 99 (116)
T ss_pred cEEEEEEecC-CCceeEc-cCCc
Confidence 68998864 4678998 6543
No 18
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=96.01 E-value=0.051 Score=38.95 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=47.8
Q ss_pred EEEecCCCCCeEEEEeecC---CCCCCceEE-EeCCeEEEEcCCcccccCC--cEEEeeecCccceEEEccCCCCC
Q 031188 82 LGVETGGCSGFQYAFDLDY---KINPDDRIF-EKDGVKLVVDNISYDFVKG--ATVDYVEELIRSAFVVSTNPSAV 151 (164)
Q Consensus 82 l~v~~~GCsG~~y~l~l~~---~~~~dD~v~-e~~Gi~v~VD~~s~~~L~g--~tIDy~e~~~g~gF~i~~nPn~~ 151 (164)
++-..+||..-+-=|-+.. ...+.|+.+ ++.|++|+|.+....|.+. ++||-++ ..|.+|.+ ++|..+
T Consensus 14 mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSL-E~~~G~ 87 (95)
T PF05610_consen 14 MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSL-EAPEGK 87 (95)
T ss_pred EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeec-cCCCCc
Confidence 4456788852222333321 234567654 6899999999999999997 5999887 45789998 888654
No 19
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=58.13 E-value=28 Score=28.87 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcC
Q 031188 62 IKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDN 120 (164)
Q Consensus 62 ~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~ 120 (164)
.+..++++++..-..-+.-|+.+.-.||+-. ..+ -..|..+|.|+|.+|++=++..
T Consensus 58 fNavkE~~~dK~y~~~kiYRf~I~C~~C~n~-i~~--RTDPkN~~YV~EsGg~R~i~pq 113 (272)
T COG5134 58 FNAVKEEIGDKSYYTTKIYRFSIKCHLCSNP-IDV--RTDPKNTEYVVESGGRRKIEPQ 113 (272)
T ss_pred hhHHHHHhcccccceeEEEEEEEEccCCCCc-eee--ecCCCCceEEEecCceeecCcc
Confidence 4556777777653223456888988888763 444 4457899999999999855443
No 20
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=44.25 E-value=22 Score=30.58 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=36.9
Q ss_pred CeeeeC----HHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEE
Q 031188 53 DSIHMT----DNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIF 109 (164)
Q Consensus 53 ~~ItIT----~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~ 109 (164)
--|+|| ..|++.+++++.+. +..+|++-...||.|. ..++... ++++++.+
T Consensus 314 iLi~v~~~~n~~akkly~q~at~~----gVvVRfrgse~~c~G~-lRitvGt-~EentvL~ 368 (375)
T KOG0633|consen 314 ILIEVTGGDNGMAKKLYKQDATKM----GVVVRFRGSEEGCKGY-LRITVGT-PEENTVLM 368 (375)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhc----ceEEEEcCCcccccee-EEEEcCC-cccchHHH
Confidence 447777 55666667777665 5789999999999996 7777665 46666543
No 21
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=41.25 E-value=36 Score=24.02 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEEEecCCCCCe
Q 031188 59 DNFIKRMKELQASETSDNKAMLRLGVETGGCSGF 92 (164)
Q Consensus 59 ~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~ 92 (164)
++-.+.|++.+++++ |++.+..-||.||
T Consensus 17 ~~V~~al~~ei~~~g------l~v~v~~tGC~G~ 44 (92)
T cd03063 17 DEVAEAIEAEAAARG------LAATIVRNGSRGM 44 (92)
T ss_pred HHHHHHHHHHHHHcC------CeEEEEEecCcee
Confidence 344566666666653 3788889999987
No 22
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.33 E-value=22 Score=26.26 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=11.1
Q ss_pred CCcccccCCcEEEeeecC
Q 031188 120 NISYDFVKGATVDYVEEL 137 (164)
Q Consensus 120 ~~s~~~L~g~tIDy~e~~ 137 (164)
+.....|+|-||||-+..
T Consensus 46 P~e~~qldGyTvDy~~~~ 63 (117)
T cd01234 46 PTEFIQLDGYTVDYMPES 63 (117)
T ss_pred chhheeecceEEeccCCC
Confidence 333455777778887653
No 23
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=38.67 E-value=1.1e+02 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=13.6
Q ss_pred CCCCCCceEEEeCCeEEEE
Q 031188 100 YKINPDDRIFEKDGVKLVV 118 (164)
Q Consensus 100 ~~~~~dD~v~e~~Gi~v~V 118 (164)
..+.++|.|.-..++.++-
T Consensus 46 ~~l~~Gd~V~v~G~v~~y~ 64 (91)
T cd04482 46 RLLIPGDEVTVYGSVRPGT 64 (91)
T ss_pred CCCCCCCEEEEEEEEecCC
Confidence 3467889887777777664
No 24
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=34.32 E-value=41 Score=23.08 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=20.1
Q ss_pred CeEEEEeecCCCCCCceEEEeCCeEEEEcCCcc
Q 031188 91 GFQYAFDLDYKINPDDRIFEKDGVKLVVDNISY 123 (164)
Q Consensus 91 G~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~ 123 (164)
|+.|.+...+-+..-|.++....+-||||---+
T Consensus 35 G~RyR~~~~~lpG~PDiv~~~~k~aIFVdGCFW 67 (75)
T PF03852_consen 35 GLRYRLNRKDLPGKPDIVFPKYKIAIFVDGCFW 67 (75)
T ss_dssp T--EEES-TTSTT--SEEEGGGTEEEEEE-TTT
T ss_pred CCEEEEccCcCCCCCCEEECCCCEEEEEeccee
Confidence 556666655556677999988889999986533
No 25
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=33.83 E-value=34 Score=29.42 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=55.7
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCC-CCCceEEE-------eCCeEEEEcCCccc
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKI-NPDDRIFE-------KDGVKLVVDNISYD 124 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~-~~dD~v~e-------~~Gi~v~VD~~s~~ 124 (164)
+.+.+.+.|-++.-+....+... ..-|.+-+-+ ..|.=.+.... +.+-+++. .+|++++|..---+
T Consensus 54 qt~~lp~~~~e~~V~ec~~~~F~---ecDIvfsgld---ad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpe 127 (361)
T KOG4777|consen 54 QTDLLPESAHEYTVEECTADSFN---ECDIVFSGLD---ADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPE 127 (361)
T ss_pred hcccccchhhhhhHhhcChhhcc---cccEEEecCC---chhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHH
Confidence 56677778877777666544321 1222222211 12222222211 22333331 47899999999999
Q ss_pred ccCCcEEEeeecCccceEEEccCCC
Q 031188 125 FVKGATVDYVEELIRSAFVVSTNPS 149 (164)
Q Consensus 125 ~L~g~tIDy~e~~~g~gF~i~~nPn 149 (164)
.|++..+-..+..++.||+| .|||
T Consensus 128 hld~ik~~~~~~k~~~G~iI-~nsN 151 (361)
T KOG4777|consen 128 HLDGIKVGLDTGKMGKGAII-ANSN 151 (361)
T ss_pred HhhhheeccccCCCCCceEE-ecCC
Confidence 99999999999999999999 7876
No 26
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.90 E-value=62 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=23.1
Q ss_pred eeCHHHHHHHHHHHhccCCCCCceEEEEEecCC
Q 031188 56 HMTDNFIKRMKELQASETSDNKAMLRLGVETGG 88 (164)
Q Consensus 56 tIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~G 88 (164)
+||..|++.+++.+.+ ++.++|+|+|.-
T Consensus 90 tIt~el~~ai~~a~~~-----~k~~~I~V~GEE 117 (167)
T COG1909 90 TITFELIKAIEKALED-----GKRVRIFVDGEE 117 (167)
T ss_pred EeEHHHHHHHHHHHhc-----CCcEEEEEeChh
Confidence 7999999999999654 567999998653
No 27
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.51 E-value=21 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=13.2
Q ss_pred EEEccCCCCC-CCCCCCCCCc
Q 031188 142 FVVSTNPSAV-GGCSCKSSFM 161 (164)
Q Consensus 142 F~i~~nPn~~-~~CgCG~SF~ 161 (164)
|+. ..|..+ -.|.||.||.
T Consensus 61 fi~-qs~~~rv~rcecghsf~ 80 (165)
T COG4647 61 FIC-QSAQKRVIRCECGHSFG 80 (165)
T ss_pred EEE-ecccccEEEEecccccc
Confidence 555 565543 3699999995
No 28
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=32.02 E-value=1.1e+02 Score=24.75 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhccCCCCCceEEEEEecCC-CCCeEEEEeecCC
Q 031188 59 DNFIKRMKELQASETSDNKAMLRLGVETGG-CSGFQYAFDLDYK 101 (164)
Q Consensus 59 ~~A~~~lk~ll~~~~~~~~~~LRl~v~~~G-CsG~~y~l~l~~~ 101 (164)
++++++++++|... +.|..+-++.+... =+|+.|-|.|+++
T Consensus 15 ~e~~~~~k~~L~~a--~~GW~~~yyp~~~~~~GGy~f~~kF~~~ 56 (235)
T PF14135_consen 15 NEALAEYKKILTSA--PNGWKLEYYPKTDQSYGGYTFLMKFDDD 56 (235)
T ss_pred HHHHHHHHHHHhcC--CCceEEEEECCCCccCCcEEEEEEECCC
Confidence 56777788888666 35777777776632 2488998988753
No 29
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.94 E-value=32 Score=18.64 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=10.2
Q ss_pred CCCCCCCC-CCCCCc
Q 031188 148 PSAVGGCS-CKSSFM 161 (164)
Q Consensus 148 Pn~~~~Cg-CG~SF~ 161 (164)
|.....|. ||-.|.
T Consensus 11 ~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 11 PESAKFCPHCGYDFE 25 (26)
T ss_pred hhhcCcCCCCCCCCc
Confidence 34456788 999985
No 30
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=28.49 E-value=2e+02 Score=20.26 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCC
Q 031188 61 FIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYK 101 (164)
Q Consensus 61 A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~ 101 (164)
..++|.+++.+.- +...|++.=..+||++ .|.+.+..+
T Consensus 4 ~e~~l~~~L~~~l--~p~~v~V~D~SgGCG~-~F~v~IvS~ 41 (85)
T KOG3348|consen 4 TEERLEELLTEAL--EPEHVEVQDVSGGCGS-MFDVVIVSA 41 (85)
T ss_pred hHHHHHHHHHhhc--CceEEEEEEcCCCccc-eEEEEEEcc
Confidence 4567888887764 2356777777899866 588877653
No 31
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=27.51 E-value=93 Score=21.38 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=25.6
Q ss_pred CeeeeCHHHHHHHHHHHhccCC-CCCceEEEEEecCCCC
Q 031188 53 DSIHMTDNFIKRMKELQASETS-DNKAMLRLGVETGGCS 90 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~-~~~~~LRl~v~~~GCs 90 (164)
..|++|+..++.|+..+..... ....+.++..+..||.
T Consensus 3 ~vlkl~~~~i~~l~~~y~~~~~~~~~p~~~f~aK~~~~t 41 (81)
T PF11858_consen 3 IVLKLTSEQIEKLKKYYKPYLTSSKPPYAVFQAKYNGVT 41 (81)
T ss_dssp EEEE--HHHHHHHHHHSTT-B-SS--TTEEEEEEETTEE
T ss_pred EEEECCHHHHHHHHHHHHHhcccCCCCCEEEEEeCCCeE
Confidence 4689999999999998854321 2346789999998884
No 32
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=25.70 E-value=95 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred eeCHHHHHHHHHHHhccCCCCCceEEEEEecC
Q 031188 56 HMTDNFIKRMKELQASETSDNKAMLRLGVETG 87 (164)
Q Consensus 56 tIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~ 87 (164)
+||+++.+.|++.+... ...+|.|+|.
T Consensus 45 ~It~el~~ai~~a~~~~-----~~~~I~V~GE 71 (121)
T PF04019_consen 45 TITEELIEAIKKALESG-----KPVVIFVDGE 71 (121)
T ss_pred cccHHHHHHHHHHHhCC-----CCEEEEEeCh
Confidence 79999999999997653 4589999864
No 33
>PRK01160 hypothetical protein; Provisional
Probab=24.36 E-value=1e+02 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=22.4
Q ss_pred eeCHHHHHHHHHHHhccCCCCCceEEEEEecC
Q 031188 56 HMTDNFIKRMKELQASETSDNKAMLRLGVETG 87 (164)
Q Consensus 56 tIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~ 87 (164)
+||+++++.|++.+.... .+..++|.|+|.
T Consensus 95 tIt~el~~ai~~a~~~~~--~~~~~~I~VdGE 124 (178)
T PRK01160 95 TITLALLRAIKKAFSLIE--RGKKVRIEVNGE 124 (178)
T ss_pred cccHHHHHHHHHHHHhhh--cCCeEEEEEcCh
Confidence 799999999999855322 245689999854
No 34
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=24.17 E-value=1.3e+02 Score=21.70 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEE
Q 031188 58 TDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVV 118 (164)
Q Consensus 58 T~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~V 118 (164)
=.+.++.|++.|.+++. +++.|||+.... .|+ | -+.+. -..+.-+..||...-|
T Consensus 21 C~~cA~Al~~~L~~~gI-~Gk~i~l~T~~~--~~~-~--I~sd~-~~~~~sIt~NG~H~gI 74 (100)
T PF15643_consen 21 CVECASALKQFLKQAGI-PGKIIRLYTGYH--EGP-F--IYSDR-LGPQESITTNGRHYGI 74 (100)
T ss_pred hHHHHHHHHHHHHHCCC-CceEEEEEecCC--CCc-e--ehhhh-hcCCcceeeCCEEEEE
Confidence 46888999999999987 589999997532 122 2 22332 2233556667654443
No 35
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.73 E-value=3e+02 Score=19.81 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=47.1
Q ss_pred ceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEc--CCcccccCCcEEEeeecCccceEEEccCCCC----C
Q 031188 78 AMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVD--NISYDFVKGATVDYVEELIRSAFVVSTNPSA----V 151 (164)
Q Consensus 78 ~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD--~~s~~~L~g~tIDy~e~~~g~gF~i~~nPn~----~ 151 (164)
....+..+..|-.|+=|.+.... +...++. -+-||-- -.+..--..+.|-|.++.....+.|..-|.+ .
T Consensus 10 ~~~~vVFEDdGeTGYFYa~d~~q---e~~~I~D--AL~IYNv~~v~~~~~~~~~~I~Wsedg~~a~L~Ingy~hA~FDF~ 84 (97)
T PF10008_consen 10 GPYAVVFEDDGETGYFYACDTSQ---EEQPIVD--ALHIYNVEDVSDKDEPRIVSICWSEDGQKAALLINGYPHAVFDFA 84 (97)
T ss_pred CCEEEEEEeCCCcEEEEEEeccc---cCCceee--EEEEEeeccccCCCCCceEEEEEcccccEEEEEECCcEEEEEEec
Confidence 45677778888899888887652 3333332 2222211 1122233457899999888888887222443 3
Q ss_pred CCCC-CCCCCc
Q 031188 152 GGCS-CKSSFM 161 (164)
Q Consensus 152 ~~Cg-CG~SF~ 161 (164)
..+| |-+.|-
T Consensus 85 ~~~Gycr~~fP 95 (97)
T PF10008_consen 85 NHVGYCRTNFP 95 (97)
T ss_pred ccccccCCCCC
Confidence 5677 777763
No 36
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.32 E-value=58 Score=22.92 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=9.0
Q ss_pred HHhhhcccccC
Q 031188 16 RLRQNHRLLSS 26 (164)
Q Consensus 16 ~~~~~~~~~~~ 26 (164)
.+|+.||+.++
T Consensus 56 QVrAlHRlvTs 66 (92)
T PHA02681 56 QVRAFHALVTS 66 (92)
T ss_pred HHHHHHHHHhC
Confidence 47999999965
No 37
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=22.11 E-value=2.8e+02 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCcEEEeeecCc--cceEEEccCCCC
Q 031188 127 KGATVDYVEELI--RSAFVVSTNPSA 150 (164)
Q Consensus 127 ~g~tIDy~e~~~--g~gF~i~~nPn~ 150 (164)
...+|||..... ..+|+|..+|..
T Consensus 84 ~e~tiDfl~g~e~~~G~~IF~~dP~~ 109 (122)
T TIGR02588 84 AEVTIDYLASGSKENGTLIFRSDPRN 109 (122)
T ss_pred eeEEEEEcCCCCeEeEEEEEccCccc
Confidence 457999996554 588999556654
No 38
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=21.83 E-value=2.9e+02 Score=23.99 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=51.4
Q ss_pred eeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEEeee
Q 031188 56 HMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVDYVE 135 (164)
Q Consensus 56 tIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tIDy~e 135 (164)
.|++.+++.|+.+...-. ...|-+..+.++ ++-++.+|++-.||+++--.-...|+.|-..=..-
T Consensus 52 ~l~~e~a~eLkkla~~l~---aspivVg~r~~~------------~~LE~GVVY~R~gV~~vs~~Tf~~~~~Ge~P~v~a 116 (313)
T COG1395 52 GLSRETAEELKKLAKSLL---ASPIVVGLRTKN------------EPLEDGVVYERYGVPAVSPETFYDYVEGEPPYVYA 116 (313)
T ss_pred ccCHHHHHHHHHHHHHhC---CCceEEEEecCC------------CccccceEEEecCceeeCHHHHHHHhCCCCceEEe
Confidence 578999999999877654 345666665433 35678899999999998888888888886554443
Q ss_pred cCccceEEE
Q 031188 136 ELIRSAFVV 144 (164)
Q Consensus 136 ~~~g~gF~i 144 (164)
+. +||.+
T Consensus 117 ~r--GG~yV 123 (313)
T COG1395 117 AR--GGFYV 123 (313)
T ss_pred cC--CeEEE
Confidence 33 45655
No 39
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=21.43 E-value=34 Score=23.66 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=7.1
Q ss_pred CCCCCCCCc
Q 031188 153 GCSCKSSFM 161 (164)
Q Consensus 153 ~CgCG~SF~ 161 (164)
-|+||.|=+
T Consensus 33 LCrCG~S~N 41 (78)
T COG3369 33 LCRCGHSEN 41 (78)
T ss_pred EEeccCcCC
Confidence 499999854
No 40
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=21.43 E-value=1.3e+02 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=12.6
Q ss_pred cceEEEccCCCCCCCCC-CCCCCc
Q 031188 139 RSAFVVSTNPSAVGGCS-CKSSFM 161 (164)
Q Consensus 139 g~gF~i~~nPn~~~~Cg-CG~SF~ 161 (164)
|...++++|=.+ ..|. ||+.|-
T Consensus 24 G~~~IvIknVPa-~~C~~CGe~y~ 46 (89)
T TIGR03829 24 GTKAIEIKETPS-ISCSHCGMEYQ 46 (89)
T ss_pred CceEEEEecCCc-ccccCCCcEee
Confidence 334444366333 3687 999874
No 41
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=20.56 E-value=2.8e+02 Score=24.99 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=61.2
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCC--------------CCeEEEEeecCCCCCCc-----eEEEeCC
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGC--------------SGFQYAFDLDYKINPDD-----RIFEKDG 113 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GC--------------sG~~y~l~l~~~~~~dD-----~v~e~~G 113 (164)
..+.=-++|++++.+.+.+. ..|+|+.....- -|+++.+.+.....++. ...+..+
T Consensus 17 ~~l~~~~~a~~~i~~ai~~~-----~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~ 91 (491)
T COG0608 17 FLLKDMEKAAARIAEAIEKG-----EKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGAD 91 (491)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCC
Confidence 44555578888888888765 457887765432 17778887776555543 2233445
Q ss_pred eEEEEcCCcccc-----cC--C---cEEEeeecCc--cceEEEccCCCCC-------CCCCCCCCCc
Q 031188 114 VKLVVDNISYDF-----VK--G---ATVDYVEELI--RSAFVVSTNPSAV-------GGCSCKSSFM 161 (164)
Q Consensus 114 i~v~VD~~s~~~-----L~--g---~tIDy~e~~~--g~gF~i~~nPn~~-------~~CgCG~SF~ 161 (164)
+.|++|--+... .+ | ..+|+..... -....+ -||+.. ..||||-+|.
T Consensus 92 liItvD~G~~~~~~i~~~~~~g~~vIVtDHH~~~~~~p~~~~i-vNP~~~~~~~~~~~lag~gv~f~ 157 (491)
T COG0608 92 LIITVDNGSGSLEEIARAKELGIDVIVTDHHPPGEELPDAVAI-VNPNLPGCDYPFKELAGVGVAFK 157 (491)
T ss_pred EEEEECCCcccHHHHHHHHhCCCcEEEECCCCCCCCCCCceEE-ECCCCCCCCCCchhhhhhhHHHH
Confidence 777777654322 11 2 4677772211 114566 599864 4577777764
Done!