Query 031188
Match_columns 164
No_of_seqs 164 out of 1205
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r94_A Protein YFHF; tetrameri 100.0 4.7E-39 1.6E-43 237.4 12.1 108 53-163 1-108 (118)
2 1nwb_A Hypothetical protein AQ 100.0 4.5E-39 1.5E-43 239.5 8.5 110 52-163 7-116 (124)
3 1x0g_A ISCA; [2Fe-2S], biosynt 100.0 1E-38 3.4E-43 233.4 6.2 109 54-163 1-110 (112)
4 2d2a_A SUFA protein; iron-sulf 100.0 1.7E-37 5.8E-42 236.9 11.8 108 52-162 38-145 (145)
5 2apn_A Protein HI1723; HI1723 100.0 1.3E-37 4.4E-42 228.1 6.4 108 53-162 7-114 (114)
6 2k4z_A DSRR; ISCA/SUFA/HESB li 100.0 4.8E-28 1.7E-32 180.4 12.0 100 51-155 19-121 (125)
7 2p2e_A Putative Fe-S biosynthe 99.8 1.7E-21 5.7E-26 145.5 6.6 95 53-151 3-115 (128)
8 2qgo_A Putative Fe-S biosynthe 99.8 5.7E-21 1.9E-25 144.9 4.3 90 52-149 3-103 (141)
9 1paa_A Yeast transcription fac 36.6 13 0.00045 17.6 1.1 10 153-162 4-14 (30)
10 2m0e_A Zinc finger and BTB dom 35.1 18 0.00061 16.8 1.4 10 153-162 4-14 (29)
11 1znf_A 31ST zinc finger from X 34.9 13 0.00043 17.3 0.8 10 153-162 3-13 (27)
12 1ard_A Yeast transcription fac 34.6 13 0.00045 17.4 0.8 10 153-162 4-14 (29)
13 1klr_A Zinc finger Y-chromosom 34.0 17 0.00058 17.0 1.2 10 153-162 4-14 (30)
14 2lvu_A Zinc finger and BTB dom 39.9 8.7 0.0003 17.9 0.0 10 153-162 4-14 (26)
15 2k02_A Ferrous iron transport 31.3 59 0.002 21.7 3.9 33 53-89 24-56 (87)
16 2kvh_A Zinc finger and BTB dom 31.2 11 0.00038 17.7 0.2 10 153-162 5-15 (27)
17 2a6s_A Toxin YOEB; YEFM, antit 30.3 36 0.0012 21.3 2.6 16 53-68 1-16 (84)
18 1rik_A E6APC1 peptide; E6-bind 30.2 14 0.00046 17.4 0.4 10 153-162 4-14 (29)
19 2m0d_A Zinc finger and BTB dom 29.2 13 0.00046 17.4 0.3 9 153-161 5-14 (30)
20 1p7a_A BF3, BKLF, kruppel-like 28.4 21 0.00072 18.0 1.0 11 152-162 12-23 (37)
21 2kvf_A Zinc finger and BTB dom 27.6 14 0.00049 17.3 0.2 10 153-162 5-15 (28)
22 1rim_A E6APC2 peptide; E6-bind 27.4 23 0.00077 17.8 1.0 10 153-162 4-14 (33)
23 2lvt_A Zinc finger and BTB dom 33.3 13 0.00045 17.6 0.0 10 153-162 4-14 (29)
24 2lvr_A Zinc finger and BTB dom 31.9 14 0.00049 17.4 0.0 10 153-162 5-15 (30)
25 2m0f_A Zinc finger and BTB dom 25.7 16 0.00056 17.0 0.2 9 153-161 4-13 (29)
26 2kfq_A FP1; protein, de novo p 25.0 18 0.00063 17.9 0.3 9 153-161 4-13 (32)
27 2elx_A Zinc finger protein 406 24.6 18 0.00061 18.0 0.2 10 153-162 9-19 (35)
28 2elr_A Zinc finger protein 406 24.2 40 0.0014 16.6 1.7 11 152-162 10-21 (36)
29 1zfd_A SWI5; DNA binding motif 22.7 37 0.0013 16.3 1.3 10 153-162 5-17 (32)
30 2elp_A Zinc finger protein 406 22.3 23 0.00078 17.9 0.4 12 152-163 10-22 (37)
31 2kvg_A Zinc finger and BTB dom 21.9 12 0.00042 17.7 -0.8 10 153-162 5-15 (27)
32 2elm_A Zinc finger protein 406 21.4 20 0.0007 18.4 0.1 10 153-162 11-21 (37)
33 1srk_A Zinc finger protein ZFP 21.2 23 0.00077 17.6 0.2 10 153-162 9-19 (35)
34 1sp2_A SP1F2; zinc finger, tra 20.3 34 0.0012 16.4 0.8 10 153-162 4-16 (31)
No 1
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=100.00 E-value=4.7e-39 Score=237.45 Aligned_cols=108 Identities=37% Similarity=0.667 Sum_probs=92.7
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID 132 (164)
|+|+|||+|+++|++++++++ ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++||
T Consensus 1 M~I~iT~~A~~~l~~ll~~~~--~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~ID 78 (118)
T 1r94_A 1 MSITLSDSAAARVNTFLANRG--KGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD 78 (118)
T ss_dssp CCCEECHHHHHHHHHHHHHHC--CCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred CceEECHHHHHHHHHHHhhCC--CCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEE
Confidence 799999999999999998875 257899999999999999999999888999999999999999999999999999999
Q ss_pred eeecCccceEEEccCCCCCCCCCCCCCCccC
Q 031188 133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163 (164)
Q Consensus 133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~~ 163 (164)
|++++++++|+| .|||++.+||||+||.++
T Consensus 79 y~~~~~g~gF~~-~NPna~~~CgCG~SF~~~ 108 (118)
T 1r94_A 79 FVKEGLNEGFKF-TNPNVKDECGCGESFKLA 108 (118)
T ss_dssp EEEETTEEEEEE-ECTTCCC-----------
T ss_pred EEcCCCcCceEE-eCCCCCCCCCCCCCcCCC
Confidence 999999999999 999999999999999976
No 2
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=100.00 E-value=4.5e-39 Score=239.50 Aligned_cols=110 Identities=38% Similarity=0.746 Sum_probs=89.9
Q ss_pred CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188 52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (164)
Q Consensus 52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI 131 (164)
+|||+|||+|+++|++++++++. ++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++|
T Consensus 7 ~m~I~iT~~A~~~l~~ll~~~~~-~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I 85 (124)
T 1nwb_A 7 QFIFKVTDKAVEEIKKVAQENNI-ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL 85 (124)
T ss_dssp CCCCEECHHHHHHHHHHHHTTTC-SSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred CceEEECHHHHHHHHHHHhhCCC-CCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEE
Confidence 49999999999999999988763 36789999999999999999999998889999999999999999999999999999
Q ss_pred EeeecCccceEEEccCCCCCCCCCCCCCCccC
Q 031188 132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163 (164)
Q Consensus 132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~~ 163 (164)
||++++.+++|+| +|||++.+||||+||+++
T Consensus 86 Dy~~~~~g~gF~~-~NPna~~~CgCG~SF~~~ 116 (124)
T 1nwb_A 86 DYVVDFMGGGFTI-RNPNATGSCGCGSSFSCG 116 (124)
T ss_dssp EEEEETTEEEEEE-ECC---------------
T ss_pred EEEcCCCcceEEE-eCCCCCcCCCCCCCcCCC
Confidence 9999999999999 999999999999999976
No 3
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=100.00 E-value=1e-38 Score=233.44 Aligned_cols=109 Identities=27% Similarity=0.551 Sum_probs=97.1
Q ss_pred eeeeCHHHHHHHHHHHhcc-CCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188 54 SIHMTDNFIKRMKELQASE-TSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (164)
Q Consensus 54 ~ItIT~~A~~~lk~ll~~~-~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID 132 (164)
||+|||+|+++|+++++++ +.+++.+|||+|+++||+||+|.|.++++++++|.+++.+|++|+||+.+++||+|++||
T Consensus 1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID 80 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD 80 (112)
T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence 6999999999999999876 432156899999999999999999999988899999999999999999999999999999
Q ss_pred eeecCccceEEEccCCCCCCCCCCCCCCccC
Q 031188 133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163 (164)
Q Consensus 133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~~ 163 (164)
|++++++++|+| +|||++.+||||+||++|
T Consensus 81 y~~~~~g~gF~~-~nPna~~~CgCG~SF~~~ 110 (112)
T 1x0g_A 81 YIEDLMGGAFRF-HNPNASQTCGCGMAFRVS 110 (112)
T ss_dssp EEEETTEEEEEE-ECTTCSEECSSSSEEECC
T ss_pred EEecCCCCEEEE-eCCCCCcCCCCCCccccC
Confidence 999999999999 999999999999999976
No 4
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=100.00 E-value=1.7e-37 Score=236.91 Aligned_cols=108 Identities=35% Similarity=0.609 Sum_probs=102.7
Q ss_pred CCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEE
Q 031188 52 LDSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATV 131 (164)
Q Consensus 52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tI 131 (164)
+|.|+|||+|+++|++++++++ ++.+|||+|+++||+||+|.|.|+++++++|.+++.+|++|+||+.+++||+|++|
T Consensus 38 ~m~ItiTe~Aa~~lk~ll~~~~--~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I 115 (145)
T 2d2a_A 38 WQGLTLTPAAAIHIRELVAKQP--GMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEV 115 (145)
T ss_dssp CCCCEECHHHHHHHHHHHHHST--TCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEE
T ss_pred cceEEECHHHHHHHHHHHhcCC--CCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEE
Confidence 6889999999999999998875 35789999999999999999999988899999999999999999999999999999
Q ss_pred EeeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 132 Dy~e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
||++++.+++|+| +|||++.+||||+||.+
T Consensus 116 Dy~e~l~g~gF~f-~NPna~~~CGCG~SF~v 145 (145)
T 2d2a_A 116 DFVREGLNQIFKF-HNPKAQNECGCGESFGV 145 (145)
T ss_dssp EEEEETTEEEEEE-ECTTTCSCCCCBCEEEC
T ss_pred EEEcCCCcceEEE-eCCCCCcccCCCCCccC
Confidence 9999999999999 99999999999999974
No 5
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-37 Score=228.08 Aligned_cols=108 Identities=43% Similarity=0.733 Sum_probs=102.1
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCCcEEE
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKGATVD 132 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g~tID 132 (164)
|+|+|||+|+++|++++++++. ++.+|||+|+++||+|++|.|.+++++.++|++++.+|++|+||+.+++||+|++||
T Consensus 7 ~~i~iT~~A~~~i~~l~~~~~~-~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~ID 85 (114)
T 2apn_A 7 VPLTFTDAAANKVKSLISEEEN-TDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVD 85 (114)
T ss_dssp CSCEECSHHHHHHHHHHHHHTC-SSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEEE
T ss_pred CcEEECHHHHHHHHHHHHhCCC-CCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEEE
Confidence 7899999999999999988763 467999999999999999999999987899999999999999999999999999999
Q ss_pred eeecCccceEEEccCCCCCCCCCCCCCCcc
Q 031188 133 YVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162 (164)
Q Consensus 133 y~e~~~g~gF~i~~nPn~~~~CgCG~SF~~ 162 (164)
|++++.+++|+| +|||++.+||||+||++
T Consensus 86 y~~~~~g~~F~~-~nPna~~~CgCG~SF~~ 114 (114)
T 2apn_A 86 YTEGLEGSRFTV-NNPNATSTCGCGSSFSI 114 (114)
T ss_dssp EECSSSCCEEEE-ECHHHHCCCCCCCCSCC
T ss_pred EEcCCCcceEEE-eCCCCCcCCCCCCCccC
Confidence 999999999999 99999999999999974
No 6
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.95 E-value=4.8e-28 Score=180.35 Aligned_cols=100 Identities=22% Similarity=0.290 Sum_probs=93.0
Q ss_pred CCCeeeeCHHHHHHHHHHHhccCCCCCceEEEEEe--cCCCCCeEEEEeecCCCCCCceEEEeCCeEEEEcCCcccccCC
Q 031188 51 SLDSIHMTDNFIKRMKELQASETSDNKAMLRLGVE--TGGCSGFQYAFDLDYKINPDDRIFEKDGVKLVVDNISYDFVKG 128 (164)
Q Consensus 51 ~~~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~--~~GCsG~~y~l~l~~~~~~dD~v~e~~Gi~v~VD~~s~~~L~g 128 (164)
.+|+|+||++|+++|++++++++. ++.+|||+|+ ++| ||+|.|.|+++ +++|.+++.+|++|+||+.+++||+|
T Consensus 19 ~~m~ItiT~~Aa~~ik~ll~~~~~-~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~G 94 (125)
T 2k4z_A 19 SHMMFKLTPAAAEQVLKAAKQGGT-EGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLDQ 94 (125)
T ss_dssp CSSCEEECHHHHHHHHHHHHHSSS-TTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHTT
T ss_pred CCCEEEECHHHHHHHHHHHhhCCC-CCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhCC
Confidence 459999999999999999988763 3578999999 888 99999999987 89999999999999999999999999
Q ss_pred cEEEeee-cCccceEEEccCCCCCCCCC
Q 031188 129 ATVDYVE-ELIRSAFVVSTNPSAVGGCS 155 (164)
Q Consensus 129 ~tIDy~e-~~~g~gF~i~~nPn~~~~Cg 155 (164)
++|||++ ++.+++|+| +|||+++.|.
T Consensus 95 ~~IDy~~~~l~g~gF~~-~NPna~~~~p 121 (125)
T 2k4z_A 95 TTLDYVELEPGQFHFIF-LNPRDPTYRP 121 (125)
T ss_dssp EEEEEEEEETTEEEEEE-ECSSSCSSCC
T ss_pred CEEEEEeCCCCcCeEEE-CCCCCCccCC
Confidence 9999999 999999999 9999998885
No 7
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=99.84 E-value=1.7e-21 Score=145.52 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=85.7
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecC-------CCCC-eEEEEeecCCCCC----CceEEEeCCeEEEEcC
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETG-------GCSG-FQYAFDLDYKINP----DDRIFEKDGVKLVVDN 120 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~-------GCsG-~~y~l~l~~~~~~----dD~v~e~~Gi~v~VD~ 120 (164)
|.|+|||+|+++|++++..++ ....||+. +++ ||+| +.|.|.+++++.+ +|++++.+|++|+||+
T Consensus 3 M~ItlT~~A~~~l~~~l~~~~--~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~ 79 (128)
T 2p2e_A 3 LKITVTDDAAKKLQRYTDDSN--AVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKG 79 (128)
T ss_dssp CEEEECHHHHHHHHHHHTCTT--EEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECG
T ss_pred cEEEECHHHHHHHHHHHhcCC--ceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECc
Confidence 789999999999999998874 13578998 666 7999 6999999988877 8999999999999999
Q ss_pred CcccccCC-cEEEeeecC----ccce-EEEccCCCCC
Q 031188 121 ISYDFVKG-ATVDYVEEL----IRSA-FVVSTNPSAV 151 (164)
Q Consensus 121 ~s~~~L~g-~tIDy~e~~----~g~g-F~i~~nPn~~ 151 (164)
.++.||+| ++|||+++. ++++ |.| .|||++
T Consensus 80 ~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~-~NPN~~ 115 (128)
T 2p2e_A 80 YSKMYMDDNMKISLNTNNSLLRLTGDNSGE-LMPALS 115 (128)
T ss_dssp GGGGGSCSEEEEEECSSSSCEEEEETTTEE-EEEEEC
T ss_pred chHHhhCCCeEEEEeCCCceEEecCCccEE-ECCCCe
Confidence 99999996 999999998 8999 999 899986
No 8
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}
Probab=99.81 E-value=5.7e-21 Score=144.87 Aligned_cols=90 Identities=20% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCeeeeCHHHHHHHHHHHhccCCCCCceE-------EEEEecCCCC-CeEEEEeecCCCCCC-ceEEEeC-CeEEEEcCC
Q 031188 52 LDSIHMTDNFIKRMKELQASETSDNKAML-------RLGVETGGCS-GFQYAFDLDYKINPD-DRIFEKD-GVKLVVDNI 121 (164)
Q Consensus 52 ~~~ItIT~~A~~~lk~ll~~~~~~~~~~L-------Rl~v~~~GCs-G~~y~l~l~~~~~~d-D~v~e~~-Gi~v~VD~~ 121 (164)
||.|+|||+|+++|++++..++ ..+| |+.++++||+ |+.|.|.+++++.++ |.+++.+ |++|+||+.
T Consensus 3 ~M~ItlTd~Aa~~ik~~l~~~~---~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~ 79 (141)
T 2qgo_A 3 LLNIKFTDNAVDYLKRREILDK---ILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDF 79 (141)
T ss_dssp -CBEEECHHHHHHHHHTTCTTS---EEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHH
T ss_pred ceEEEECHHHHHHHHHHHhhcc---ceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECch
Confidence 6899999999999999998763 5688 9999999999 999999999988899 9999999 599999999
Q ss_pred cccccC-CcEEEeeecCccceEEEccCCC
Q 031188 122 SYDFVK-GATVDYVEELIRSAFVVSTNPS 149 (164)
Q Consensus 122 s~~~L~-g~tIDy~e~~~g~gF~i~~nPn 149 (164)
+++||+ |++|||+++ .|.+ ++|.
T Consensus 80 sl~yLd~G~~IDy~~~----~l~L-ks~s 103 (141)
T 2qgo_A 80 DKTMLGPNMVMDYNAG----SLSL-SSDE 103 (141)
T ss_dssp HHTTSCSSEEEEEETT----EEEE-EETT
T ss_pred HHHHhcCCCEEeEECC----EEEE-cCCC
Confidence 999999 999999975 6877 6654
No 9
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=36.62 E-value=13 Score=17.64 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=7.6
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1paa_A 4 ACGLCNRAFTR 14 (30)
T ss_dssp BCTTTCCBCSS
T ss_pred CCcccCcccCC
Confidence 476 9999974
No 10
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.09 E-value=18 Score=16.77 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=7.6
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 2m0e_A 4 KCPHCDKKFNQ 14 (29)
T ss_dssp CCSSCCCCCCT
T ss_pred cCCCCCcccCC
Confidence 476 9999974
No 11
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.95 E-value=13 Score=17.29 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=7.4
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T 1znf_A 3 KCGLCERSFVE 13 (27)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCCCCCcCCC
Confidence 465 9999963
No 12
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=34.64 E-value=13 Score=17.43 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=7.6
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 1ard_A 4 VCEVCTRAFAR 14 (29)
T ss_dssp BCTTTCCBCSS
T ss_pred ECCCCCcccCC
Confidence 476 9999963
No 13
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=33.97 E-value=17 Score=17.02 Aligned_cols=10 Identities=20% Similarity=0.467 Sum_probs=7.6
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~k~f~~ 14 (30)
T 1klr_A 4 QCQYCEFRSAD 14 (30)
T ss_dssp CCSSSSCCCSC
T ss_pred cCCCCCCccCC
Confidence 476 9999964
No 14
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.95 E-value=8.7 Score=17.91 Aligned_cols=10 Identities=30% Similarity=0.860 Sum_probs=7.4
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~k~f~~ 14 (26)
T 2lvu_A 4 VCERCGKRFVQ 14 (26)
Confidence 465 9999864
No 15
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=31.30 E-value=59 Score=21.67 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=25.7
Q ss_pred CeeeeCHHHHHHHHHHHhccCCCCCceEEEEEecCCC
Q 031188 53 DSIHMTDNFIKRMKELQASETSDNKAMLRLGVETGGC 89 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~ll~~~~~~~~~~LRl~v~~~GC 89 (164)
..+.+|+.++.+..+.|.++ |.-.|+.....||
T Consensus 24 ~~l~VS~~TIRrDL~~Le~~----G~l~R~~~~~~~C 56 (87)
T 2k02_A 24 ARLQTPQPLIDAMLERMEAM----GKVVRISETSEGC 56 (87)
T ss_dssp HHTTCCHHHHHHHHHHHHTT----CCSEEEEEECCSS
T ss_pred HHHCcCHHHHHHHHHHHHHC----CCEEEEecCCCCC
Confidence 46788999999999999887 4667886556666
No 16
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.25 E-value=11 Score=17.68 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=7.3
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvh_A 5 SCSLCPQRSRD 15 (27)
T ss_dssp ECSSSSCEESS
T ss_pred cCCCcChhhCC
Confidence 466 9998863
No 17
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=30.32 E-value=36 Score=21.29 Aligned_cols=16 Identities=0% Similarity=-0.170 Sum_probs=13.0
Q ss_pred CeeeeCHHHHHHHHHH
Q 031188 53 DSIHMTDNFIKRMKEL 68 (164)
Q Consensus 53 ~~ItIT~~A~~~lk~l 68 (164)
|.|.+|++|.+.|+++
T Consensus 1 m~i~~t~~a~kdl~~l 16 (84)
T 2a6s_A 1 MKLIWSEESWDDYLYW 16 (84)
T ss_dssp CEEEECHHHHHHHHHH
T ss_pred CeEEECHHHHHHHHHH
Confidence 6788899988887766
No 18
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=30.16 E-value=14 Score=17.43 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=7.2
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 1rik_A 4 ACPECPKRFMR 14 (29)
T ss_dssp ECSSSSCEESC
T ss_pred cCCCCCchhCC
Confidence 365 8988864
No 19
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.22 E-value=13 Score=17.42 Aligned_cols=9 Identities=44% Similarity=1.073 Sum_probs=6.9
Q ss_pred CCC-CCCCCc
Q 031188 153 GCS-CKSSFM 161 (164)
Q Consensus 153 ~Cg-CG~SF~ 161 (164)
.|. ||.+|.
T Consensus 5 ~C~~C~~~f~ 14 (30)
T 2m0d_A 5 QCDYCGRSFS 14 (30)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 466 999886
No 20
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=28.39 E-value=21 Score=18.02 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=8.3
Q ss_pred CCCC-CCCCCcc
Q 031188 152 GGCS-CKSSFMV 162 (164)
Q Consensus 152 ~~Cg-CG~SF~~ 162 (164)
-.|. ||.+|..
T Consensus 12 ~~C~~C~k~f~~ 23 (37)
T 1p7a_A 12 FQCPDCDRSFSR 23 (37)
T ss_dssp BCCTTTCCCBSS
T ss_pred ccCCCCCcccCc
Confidence 3587 9999974
No 21
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.64 E-value=14 Score=17.28 Aligned_cols=10 Identities=40% Similarity=1.059 Sum_probs=7.2
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 5 ~C~~C~k~f~~ 15 (28)
T 2kvf_A 5 SCSVCGKRFSL 15 (28)
T ss_dssp ECSSSCCEESC
T ss_pred cCCCCCcccCC
Confidence 466 9998863
No 22
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=27.40 E-value=23 Score=17.76 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=7.7
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~k~F~~ 14 (33)
T 1rim_A 4 ACPECPKRFMR 14 (33)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCCCCchhCC
Confidence 476 9999963
No 23
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.34 E-value=13 Score=17.63 Aligned_cols=10 Identities=30% Similarity=0.866 Sum_probs=7.4
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 4 ~C~~C~k~f~~ 14 (29)
T 2lvt_A 4 QCVMCGKAFTQ 14 (29)
Confidence 466 9999864
No 24
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=31.89 E-value=14 Score=17.45 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=7.4
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 5 ~C~~C~k~f~~ 15 (30)
T 2lvr_A 5 VCIHCQRQFAD 15 (30)
Confidence 466 9999863
No 25
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.75 E-value=16 Score=16.97 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=6.7
Q ss_pred CCC-CCCCCc
Q 031188 153 GCS-CKSSFM 161 (164)
Q Consensus 153 ~Cg-CG~SF~ 161 (164)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2m0f_A 4 KCRECGKQFT 13 (29)
T ss_dssp ECTTTSCEES
T ss_pred cCCCCCCccC
Confidence 365 898886
No 26
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=25.02 E-value=18 Score=17.93 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=7.2
Q ss_pred CCC-CCCCCc
Q 031188 153 GCS-CKSSFM 161 (164)
Q Consensus 153 ~Cg-CG~SF~ 161 (164)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (32)
T 2kfq_A 4 ACPACPKRFM 13 (32)
T ss_dssp SSSSSCTTHH
T ss_pred CCCCCCcccC
Confidence 576 999986
No 27
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.56 E-value=18 Score=17.95 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=7.6
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 2elx_A 9 VCALCLKKFVS 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred ECCCCcchhCC
Confidence 576 9999863
No 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.18 E-value=40 Score=16.64 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=8.5
Q ss_pred CCCC-CCCCCcc
Q 031188 152 GGCS-CKSSFMV 162 (164)
Q Consensus 152 ~~Cg-CG~SF~~ 162 (164)
..|. ||.+|..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 4687 9999974
No 29
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.69 E-value=37 Score=16.29 Aligned_cols=10 Identities=30% Similarity=1.072 Sum_probs=7.9
Q ss_pred CCC---CCCCCcc
Q 031188 153 GCS---CKSSFMV 162 (164)
Q Consensus 153 ~Cg---CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 5 ~C~~~~C~k~f~~ 17 (32)
T 1zfd_A 5 SCDHPGCDKAFVR 17 (32)
T ss_dssp CCCCTTCCCCBSS
T ss_pred cCcCCCCCCccCC
Confidence 585 9999974
No 30
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.30 E-value=23 Score=17.93 Aligned_cols=12 Identities=33% Similarity=0.694 Sum_probs=8.5
Q ss_pred CCCC-CCCCCccC
Q 031188 152 GGCS-CKSSFMVK 163 (164)
Q Consensus 152 ~~Cg-CG~SF~~~ 163 (164)
..|. ||.+|..+
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elp_A 10 MKCPYCDFYFMKN 22 (37)
T ss_dssp EECSSSSCEECSS
T ss_pred eECCCCChhhccC
Confidence 3576 99998743
No 31
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.91 E-value=12 Score=17.71 Aligned_cols=10 Identities=20% Similarity=0.747 Sum_probs=6.9
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 5 ~C~~C~k~f~~ 15 (27)
T 2kvg_A 5 RCPLCRAGCPS 15 (27)
T ss_dssp EETTTTEEESC
T ss_pred CCCCCCcccCC
Confidence 365 8888863
No 32
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=20 Score=18.38 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=7.5
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 11 ~C~~C~k~f~~ 21 (37)
T 2elm_A 11 YCSQCHYSSIT 21 (37)
T ss_dssp ECSSSSCEEEC
T ss_pred ECCCCCcccCC
Confidence 476 9999863
No 33
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.24 E-value=23 Score=17.63 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=7.5
Q ss_pred CCC-CCCCCcc
Q 031188 153 GCS-CKSSFMV 162 (164)
Q Consensus 153 ~Cg-CG~SF~~ 162 (164)
.|. ||.+|..
T Consensus 9 ~C~~C~k~f~~ 19 (35)
T 1srk_A 9 VCRICLSAFTT 19 (35)
T ss_dssp ECSSSCCEESS
T ss_pred eCCCCCcccCC
Confidence 576 9999863
No 34
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=20.33 E-value=34 Score=16.36 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=7.8
Q ss_pred CC---CCCCCCcc
Q 031188 153 GC---SCKSSFMV 162 (164)
Q Consensus 153 ~C---gCG~SF~~ 162 (164)
.| .||.+|..
T Consensus 4 ~C~~~~C~k~f~~ 16 (31)
T 1sp2_A 4 MCTWSYCGKRFTR 16 (31)
T ss_dssp BCCSTTCCCBCSS
T ss_pred CCcCCCCCcccCC
Confidence 57 59999974
Done!