BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031189
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5J|A Chain A, Crystal Structure Of Burkholderia Cenocepacia
Dihydropteroate Synthase.
pdb|2Y5S|A Chain A, Crystal Structure Of Burkholderia Cenocepacia
Dihydropteroate Synthase Complexed With
7,8-Dihydropteroate.
pdb|2Y5S|B Chain B, Crystal Structure Of Burkholderia Cenocepacia
Dihydropteroate Synthase Complexed With
7,8-Dihydropteroate
Length = 294
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 46 NFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQDAADQRLSDTLPA 94
+F R++++ D V + C++ GFGF D A L DT PA
Sbjct: 171 DFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPA 219
>pdb|1IA9|A Chain A, Crystal Structure Of The Atypical Protein Kinase Domain Of
A Trp Ca-Channel, Chak (Amppnp Complex)
pdb|1IA9|B Chain B, Crystal Structure Of The Atypical Protein Kinase Domain Of
A Trp Ca-Channel, Chak (Amppnp Complex)
pdb|1IAH|A Chain A, Crystal Structure Of The Atypical Protein Kinase Domain Of
A Trp Ca-Channel, Chak (Adp-Mg Complex)
pdb|1IAH|B Chain B, Crystal Structure Of The Atypical Protein Kinase Domain Of
A Trp Ca-Channel, Chak (Adp-Mg Complex)
pdb|1IAJ|A Chain A, Crystal Structure Of The Atypical Protein Kinase Domain Of
A Trp Ca-Channel, Chak (Apo)
pdb|1IAJ|B Chain B, Crystal Structure Of The Atypical Protein Kinase Domain Of
A Trp Ca-Channel, Chak (Apo)
Length = 280
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 125 PLGSPHTIFGTGENDPQTVKTRLRQWAQVVACSVRQFSS 163
P G P T++ E+ P + + W+Q+ C+ +F S
Sbjct: 27 PRGEPVTVYRLEESSPSILNNSMSSWSQLGLCAKIEFLS 65
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPEDVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPADVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPADVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPEDVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPEDVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPEDVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPEDVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 194 TWEPEDVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 250
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 251 VAAARDIRDTFARMAM 266
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 29 SWSP-DVY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQD--- 82
+W P DVY ++ WL G ++ S D ++ A +++G + +P GPD +
Sbjct: 160 TWEPEDVYWGSEKIWLELSGGPNSRYSG---DRQLENPLAAVQMGLIYVNPEGPDGNPDP 216
Query: 83 -AADQRLSDTLPALEL 97
AA + + DT + +
Sbjct: 217 VAAARDIRDTFARMAM 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,916,115
Number of Sequences: 62578
Number of extensions: 195533
Number of successful extensions: 310
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 11
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)