BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031189
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 81 QDAADQRLSDTLPALELYYAVNKHYLSKSTPPSL 114
+DA+D D LP ELYY +K L+ PP++
Sbjct: 880 EDASDLNDDDNLPTQELYYVFDKFILTSGKPPTI 913
>sp|B2II34|KATG_BEII9 Catalase-peroxidase OS=Beijerinckia indica subsp. indica (strain
ATCC 9039 / DSM 1715 / NCIB 8712) GN=katG PE=3 SV=1
Length = 738
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 29 SWSPD--VY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPD 80
+W PD Y + WL + NK S+ D D++ A +++G + +P GPD
Sbjct: 179 TWEPDQSAYWGAETTWLALSNDPNNKHSRYSGDRDLENPLAAVQMGLIYVNPEGPD 234
>sp|Q9JW14|XERC_NEIMA Tyrosine recombinase XerC OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=xerC PE=3 SV=1
Length = 305
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 33 DVYRDEAWLRRKGNFKNKRSKSVTDEDVDELKACIEL 69
DVY DEAW+ G + +R +T + V+ LK + L
Sbjct: 166 DVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPL 202
>sp|A9M1G2|XERC_NEIM0 Tyrosine recombinase XerC OS=Neisseria meningitidis serogroup C
(strain 053442) GN=xerC PE=3 SV=1
Length = 305
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 33 DVYRDEAWLRRKGNFKNKRSKSVTDEDVDELKACIEL 69
DVY DEAW+ G + +R +T + V+ LK + L
Sbjct: 166 DVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPL 202
>sp|A8GGQ0|KATG_SERP5 Catalase-peroxidase OS=Serratia proteamaculans (strain 568) GN=katG
PE=3 SV=1
Length = 732
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 29 SWSPD-VY--RDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPD 80
+W PD VY ++ WL G + S+ D D+++ A +++G + +P GPD
Sbjct: 179 TWEPDDVYWGSEKIWLELSGG---QNSRYSGDRDLEDPLAAVQMGLIYVNPEGPD 230
>sp|O08340|GLTD_RHOSH Putative glutamate synthase [NADPH] small chain OS=Rhodobacter
sphaeroides GN=gltD PE=3 SV=1
Length = 413
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 105 YLSKSTPPSLSTVSDCDTLSPLGSPHTIFGTGENDPQTVKTRLRQWAQVVACSVRQ 160
YL+ S S D D L G + G G+ V+T +RQ A V C R+
Sbjct: 203 YLTASNRRSFGDEVDDDGLDASGKRVVVIGGGDTAMDCVRTAIRQGATSVKCLYRR 258
>sp|A1KS31|XERC_NEIMF Tyrosine recombinase XerC OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=xerC PE=3
SV=1
Length = 305
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 33 DVYRDEAWLRRKGNFKNKRSKSVTDEDVDELKACIEL 69
DVY DEAW+ G + +R +T + V+ LK + L
Sbjct: 166 DVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPL 202
>sp|B4RNW5|XERC_NEIG2 Tyrosine recombinase XerC OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=xerC PE=3 SV=1
Length = 305
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 33 DVYRDEAWLRRKGNFKNKRSKSVTDEDVDELKACIEL 69
DVY DEAW+ G + +R +T + V+ LK + L
Sbjct: 166 DVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPL 202
>sp|Q5FAI3|XERC_NEIG1 Tyrosine recombinase XerC OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=xerC PE=3 SV=1
Length = 305
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 33 DVYRDEAWLRRKGNFKNKRSKSVTDEDVDELKACIEL 69
DVY DEAW+ G + +R +T + V+ LK + L
Sbjct: 166 DVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYLPL 202
>sp|Q6AXV6|SPERT_RAT Spermatid-associated protein OS=Rattus norvegicus GN=Spert PE=2
SV=1
Length = 447
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 45 GNFKNKRSKSVTDEDVDELKACIELGFGFDSPAGPDQDAADQRLSDTLPALELYYAVNK 103
+F+ ++ T ED L+A E+ P+G ++ A L+D+ L+L +N+
Sbjct: 304 SHFEEPKASPTTQEDSKTLRALREMVTNLSGPSGEEEGKAGPNLTDSAQPLQLLREMNQ 362
>sp|Q96QT4|TRPM7_HUMAN Transient receptor potential cation channel subfamily M member 7
OS=Homo sapiens GN=TRPM7 PE=1 SV=1
Length = 1865
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 12/138 (8%)
Query: 33 DVYRDEAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDSPAG---PDQDAADQRLS 89
D +R + K K R S D + KA + + D P+ P ++ L+
Sbjct: 1483 DCHRTSIPVHSKQAEKISRRPSTEDTHEVDSKAALIPDWLQDRPSNREMPSEEGTLNGLT 1542
Query: 90 DTL-PALE---LYYAVNKHYLSKSTPPSLSTVSDCDTLSPLGSPHTIFGTGENDPQTVKT 145
PA++ Y AV ++ L + LS + P G P T++ E+ P +
Sbjct: 1543 SPFKPAMDTNYYYSAVERNNLMR-----LSQSIPFTPVPPRGEPVTVYRLEESSPNILNN 1597
Query: 146 RLRQWAQVVACSVRQFSS 163
+ W+Q+ C+ +F S
Sbjct: 1598 SMSSWSQLGLCAKIEFLS 1615
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,545,878
Number of Sequences: 539616
Number of extensions: 2848976
Number of successful extensions: 5309
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5296
Number of HSP's gapped (non-prelim): 22
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)