Query 031189
Match_columns 164
No_of_seqs 116 out of 126
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lqv_P Splicing factor 3B subu 37.9 13 0.00043 23.5 1.2 14 50-63 18-31 (39)
2 2fho_A Spliceosomal protein SF 31.7 20 0.00067 23.3 1.4 16 50-65 17-32 (47)
3 1baz_A ARC repressor; transcri 27.2 33 0.0011 21.7 1.9 15 140-154 15-29 (53)
4 2kta_A Putative helicase; PSI, 22.6 24 0.00083 24.2 0.7 33 38-75 35-67 (74)
5 2kmu_A ATP-dependent DNA helic 20.8 66 0.0023 21.2 2.5 18 140-157 6-23 (56)
6 3zwt_A Dihydroorotate dehydrog 19.6 25 0.00084 30.2 0.2 36 56-91 69-108 (367)
7 3nj2_A DUF269-containing prote 17.9 78 0.0027 25.5 2.8 31 132-163 75-105 (174)
8 3g7p_A Nitrogen fixation prote 17.4 83 0.0028 24.8 2.8 31 132-163 57-87 (156)
9 2gmg_A Hypothetical protein PF 17.1 46 0.0016 24.7 1.2 18 20-37 26-43 (105)
10 1und_A Advillin, P92; actin bi 15.9 45 0.0015 20.3 0.7 13 54-66 2-14 (37)
No 1
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=37.92 E-value=13 Score=23.48 Aligned_cols=14 Identities=29% Similarity=0.798 Sum_probs=11.9
Q ss_pred CCCCCCChhhHHHh
Q 031189 50 KRSKSVTDEDVDEL 63 (164)
Q Consensus 50 rr~KSlTD~DleEL 63 (164)
.|.|-|||+||+.+
T Consensus 18 ~RNrpltDEeLD~m 31 (39)
T 3lqv_P 18 ERNRPLSDEELDAM 31 (39)
T ss_dssp HTTCCCCHHHHHHT
T ss_pred hhcCCCCHHHHHHh
Confidence 46789999999986
No 2
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.68 E-value=20 Score=23.35 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=13.1
Q ss_pred CCCCCCChhhHHHhhh
Q 031189 50 KRSKSVTDEDVDELKA 65 (164)
Q Consensus 50 rr~KSlTD~DleELKG 65 (164)
.|.+-|||+|||.+==
T Consensus 17 ~rnrpltDEeLD~~LP 32 (47)
T 2fho_A 17 ERNRPLSDEELDAMFP 32 (47)
T ss_dssp CCCCCSCTTHHHHHSC
T ss_pred cccCCCCHHHHHHhCC
Confidence 5678999999998754
No 3
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=27.19 E-value=33 Score=21.68 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q 031189 140 PQTVKTRLRQWAQVV 154 (164)
Q Consensus 140 p~dvK~rLK~WAqaV 154 (164)
|.+++.+|+.||..=
T Consensus 15 p~eL~~~l~~~A~~~ 29 (53)
T 1baz_A 15 PREVLDLVRKVAEEN 29 (53)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 578999999999753
No 4
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=22.62 E-value=24 Score=24.22 Aligned_cols=33 Identities=12% Similarity=0.374 Sum_probs=22.0
Q ss_pred HHHHhhhccCCCCCCCCCChhhHHHhhhhhhhcCCCCC
Q 031189 38 EAWLRRKGNFKNKRSKSVTDEDVDELKACIELGFGFDS 75 (164)
Q Consensus 38 eaW~rrk~~~~~rr~KSlTD~DleELKGc~DLGFgF~~ 75 (164)
-.|....|...+ .-.||++=++.|. +|||+|+-
T Consensus 35 G~WV~~QR~~~k--~g~Ls~eRi~~L~---~lGf~w~~ 67 (74)
T 2kta_A 35 GGWCHTQRKMRK--QGKLPNDRRLLLD---KIGFVWSL 67 (74)
T ss_dssp HHHHHHHHHHHH--HTCCCHHHHHHHH---HHTCCCCC
T ss_pred hhhHHHHHHHHH--cCCCCHHHHHHHH---HcCCEecc
Confidence 456665443321 2248988888887 89999984
No 5
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=20.80 E-value=66 Score=21.19 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031189 140 PQTVKTRLRQWAQVVACS 157 (164)
Q Consensus 140 p~dvK~rLK~WAqaVAcs 157 (164)
-.++|.+||.|-++.+-.
T Consensus 6 ~~~lk~~LK~WE~~F~~~ 23 (56)
T 2kmu_A 6 LRDVRERLQAWERAFRRQ 23 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367999999999988744
No 6
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=19.56 E-value=25 Score=30.23 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=23.5
Q ss_pred ChhhHHHhhhhhhhcCCCCCCC----CCCCccccchhhhh
Q 031189 56 TDEDVDELKACIELGFGFDSPA----GPDQDAADQRLSDT 91 (164)
Q Consensus 56 TD~DleELKGc~DLGFgF~~~~----~~d~ed~~p~L~~t 91 (164)
+|-+-++++++.+|||||=+-+ .|-.....||+..+
T Consensus 69 ~~~~~~~~~~~~~~g~G~v~~ktvt~~pq~GNp~PR~~~~ 108 (367)
T 3zwt_A 69 FDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRL 108 (367)
T ss_dssp SSTTSSSHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEE
T ss_pred cCCCHHHHHHHHhcCcCeEEeCCccCCCCCCCCCCeEEEe
Confidence 5667789999999999995322 11112345677655
No 7
>3nj2_A DUF269-containing protein; cyanobacteria, circadium rhythms, nitrogen fixation, unknown; 1.59A {Cyanothece SP}
Probab=17.91 E-value=78 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=23.6
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhhhcccCC
Q 031189 132 IFGTGENDPQTVKTRLRQWAQVVACSVRQFSS 163 (164)
Q Consensus 132 I~spgD~~p~dvK~rLK~WAqaVAcsVrq~s~ 163 (164)
|+.-||.||+.+ .||+..=+|||..|-.+.|
T Consensus 75 IpiiGDpDp~tl-~Ri~~FY~AVA~~IEk~TG 105 (174)
T 3nj2_A 75 ISLEGDIDPTTK-LRILCYFRAIAALIEKETG 105 (174)
T ss_dssp SCSSSCCCHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHC
Confidence 555588856655 9999999999999865543
No 8
>3g7p_A Nitrogen fixation protein; DUF 269 family protein, structural genomics, joint center FO structural genomics; HET: SO4 PG6; 2.00A {Acidithiobacillus ferrooxidans atcc 23ORGANISM_TAXID}
Probab=17.40 E-value=83 Score=24.84 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=24.0
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhhhcccCC
Q 031189 132 IFGTGENDPQTVKTRLRQWAQVVACSVRQFSS 163 (164)
Q Consensus 132 I~spgD~~p~dvK~rLK~WAqaVAcsVrq~s~ 163 (164)
|+.-||.||..+ .||+..=+|||..|-.+.|
T Consensus 57 IpiigdpDp~tl-~Ri~~FY~AVa~~IEk~TG 87 (156)
T 3g7p_A 57 IPIIGDPDPEIL-WRVELFYNAVGLATERASG 87 (156)
T ss_dssp CCCCSSCCHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHC
Confidence 556688856655 9999999999999865544
No 9
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=17.13 E-value=46 Score=24.67 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=11.5
Q ss_pred CCcccccccCCCCccchH
Q 031189 20 APQGLRKQHSWSPDVYRD 37 (164)
Q Consensus 20 ~~~~L~kq~s~spd~~rd 37 (164)
.++-|.+.+..-|..++|
T Consensus 26 ta~ei~~~l~i~~~~~ke 43 (105)
T 2gmg_A 26 SPSELARILDMRGKGSKK 43 (105)
T ss_dssp CTTHHHHSSCCCSSCCHH
T ss_pred CHHHHHHHhCCCCCChHH
Confidence 356777777775555555
No 10
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=15.89 E-value=45 Score=20.30 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=10.0
Q ss_pred CCChhhHHHhhhh
Q 031189 54 SVTDEDVDELKAC 66 (164)
Q Consensus 54 SlTD~DleELKGc 66 (164)
-|||+|+++|=|+
T Consensus 2 yLsd~dF~~vFgm 14 (37)
T 1und_A 2 YLSEQDFVSVFGI 14 (37)
T ss_dssp CCCHHHHHHHHSS
T ss_pred CCCHHHHHHHHCc
Confidence 3889999998553
Done!