BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031190
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
G STT++ ILKAK G ++ T +D VYDA+K M + +GAL+VV + +AG
Sbjct: 3 GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
I+TERDY RK+++Q RSSK+T+V +IMT K+ V P M LMT H +
Sbjct: 58 IVTERDYARKVVLQERSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRM 109
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 7/84 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
T+ +L+ KG + + DD+V++A++ M N+GAL+V+K + + GI+TERD
Sbjct: 7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERD 59
Query: 115 YLRKIIVQGRSSKSTKVGDIMTEE 138
+ RK + + K T+V +IMT +
Sbjct: 60 FSRKSYLLDKPVKDTQVKEIMTRQ 83
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T D TV +A+ M ++ +G L VV E+ + G++T RD V+ + S K+
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD------VRFEKNLSKKI 157
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML 162
D+MT KLI PD + +A +++ H +
Sbjct: 158 KDLMTPREKLIVAPPDISLEKAKEILHQHRI 188
>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
pdb|3GHD|B Chain B, Crystal Structure Of A Cystathionine Beta-Synthase Domain
Protein Fused To A Zn-Ribbon-Like Domain
Length = 70
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
DTV K ++++ G+ VV E + G++TERD L K++ +G++ K KV +I T+
Sbjct: 9 DTVDRVAKILSRNKAGSAVVX---EGDEILGVVTERDILDKVVAKGKNPKEVKVEEIXTK 65
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
+T + D+L KG+ + D ++ +A ++ H +GA+VV V GI TE
Sbjct: 23 ATFVKDLLDRKGR----DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA--DGVVLGIFTE 76
Query: 113 RDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTG 159
RD ++ + QG +S V MT+ ++ ++ + M++MTG
Sbjct: 77 RDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTG 121
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
+ T + VYDA M ++ + + VV +++ + GIIT RD +R I S K+
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI-----QDYSIKI 177
Query: 132 GDIMTEENKLITVSPDTKVLRAMQLM 157
D+MT+E +LIT T + A +++
Sbjct: 178 SDVMTKE-QLITAPVGTTLSEAEKIL 202
>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp And Moa Bound
pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Mycophenolic Acid
Bound
pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Xmp And Nad Bound
pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
Tritrichomonas Foetus
Length = 503
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 77 DDTVYD--AVKSMTQHNVGALVVVKPGEQKSVA-GIITERDYLRKIIVQGRSSKSTKVGD 133
D T D A+ T HN + V G V G++T+RDY + + TKV D
Sbjct: 113 DQTFADVLAISQRTTHNT--VAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKVSD 165
Query: 134 IMTEENKLITVSPDTKVLRAMQLM 157
+MT +KL+T DTK+ A +++
Sbjct: 166 MMTPFSKLVTAHQDTKLSEANKII 189
>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Rvp Bound
pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp Bound
pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
Tritrichomonas Foetus With Imp And Moa Bound
Length = 503
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 77 DDTVYD--AVKSMTQHNVGALVVVKPGEQKSVA-GIITERDYLRKIIVQGRSSKSTKVGD 133
D T D A+ T HN + V G V G++T+RDY + + TKV D
Sbjct: 113 DQTFADVLAISQRTTHNT--VAVTDDGTPHGVLLGLVTQRDYPIDL-----TQTETKVSD 165
Query: 134 IMTEENKLITVSPDTKVLRAMQLM 157
+MT +KL+T DTK+ A +++
Sbjct: 166 MMTPFSKLVTAHQDTKLSEANKII 189
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVV---KPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
+ T D + D K T+ N+G+++VV KP GIITERD + K I +G+S +
Sbjct: 15 ISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKP------VGIITERDIV-KAIGKGKSLE- 66
Query: 129 TKVGDIMTEENKLITVSPDTKVLRAMQL 156
TK + T LIT+ D+ + A+ L
Sbjct: 67 TKAEEFXTA--SLITIREDSPITGALAL 92
>pdb|2XED|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
Length = 273
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISD--ILKAKGKGADGSWLWCTTDD 78
QR+ LV P +RP+ A +E GF TISD L+ AD + + C +
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRALEV----ADNTEVGCIPGE 194
Query: 79 TVYDAVKSMTQHNVGALVV 97
V A +S+ V ALV+
Sbjct: 195 QVMAAARSLDLSEVDALVI 213
>pdb|2XEC|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
Length = 273
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISD--ILKAKGKGADGSWLWCTTDD 78
QR+ LV P +RP+ A +E GF TISD L+ AD + + C +
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRALEV----ADNTEVGCIPGE 194
Query: 79 TVYDAVKSMTQHNVGALVV 97
V A +S+ V ALV+
Sbjct: 195 QVMAAARSLDLSEVDALVI 213
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 32.0 bits (71), Expect = 0.16, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
D +K G + T + VYDA ++ + + VV +++ + GIIT RD R
Sbjct: 110 DKVKRSESGVISDPFFLTPEHQVYDAEHLXGKYRISGVPVVNNLDERKLVGIITNRD-XR 168
Query: 118 KIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLM 157
I S K+ D+ T+E +LIT T + A +++
Sbjct: 169 FI-----QDYSIKISDVXTKE-QLITAPVGTTLSEAEKIL 202
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 45 RMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSMTQHNVGALVVV 98
R +E G+ I D+L A+ GA+GSW +C+ + +K+ + + V
Sbjct: 90 RRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFV 149
Query: 99 KPGEQK 104
+ E +
Sbjct: 150 QEAESR 155
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 45 RMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSMTQHNVGALVVV 98
R +E G+ I D+L A+ GA+GSW +C+ + +K+ + + V
Sbjct: 92 RRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFV 151
Query: 99 KPGEQK 104
+ E +
Sbjct: 152 QEAESR 157
>pdb|4ESY|A Chain A, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
DDT+ K+ +H +G VV + + GIITE D+LR
Sbjct: 34 DDTLDAVAKTXLEHQIGCAPVVD--QNGHLVGIITESDFLR 72
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 45 RMEEHGFESTTISDILKAKGKGADGSWL------WCTTDDTVYDAVKSMTQHNVGALVVV 98
R +E G+ I D+L A+ GA+GSW +C+ + +K+ + + V
Sbjct: 132 RRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFV 191
Query: 99 KPGEQK 104
+ E +
Sbjct: 192 QEAESR 197
>pdb|4ESY|B Chain B, Crystal Structure Of The Cbs Domain Of Cbs Domain
Containing Membrane Protein From Sphaerobacter
Thermophilus
Length = 170
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
DDT+ K+ +H +G VV + + GIITE D+LR
Sbjct: 34 DDTLDAVAKTXLEHQIGXAPVVD--QNGHLVGIITESDFLR 72
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
TV+DAVK M ++++ LVV + + G+++ER +++ I + + + +M
Sbjct: 27 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM 81
>pdb|3FV6|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FV6|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor
pdb|3FWR|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWR|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Adp
pdb|3FWS|A Chain A, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
pdb|3FWS|B Chain B, Crystal Structure Of The Cbs Domains From The Bacillus
Subtilis Ccpn Repressor Complexed With Appnp, Phosphate
And Magnesium Ions
Length = 159
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
+VYDA+ +M +VG L VV + G+++ +D LR I Q + S V IMT
Sbjct: 34 SVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQQELT-SVPVHIIMT 88
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
TV+DAVK M ++++ LVV + + G+++ER +++ I + + + +M
Sbjct: 41 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM 95
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 234 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 272
>pdb|2IDA|A Chain A, Solution Nmr Structure Of Protein Rpa1320 From
Rhodopseudomonas Palustris. Northeast Structural
Genomics Consortium Target Rpt3; Ontario Center For
Structural Proteomics Target Rp1313
Length = 102
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 63 KGKGADGSWLWCTTDDTVYDAVKSMTQHN 91
+G W WC D+ ++D MT HN
Sbjct: 67 EGYDPPEGWGWCYVDEVMFDLSDRMTPHN 95
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
D++KA AD + V+DA+K + N L++ G ++ ++ E + +
Sbjct: 165 DLVKANKLNADPA-------SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMN 217
Query: 118 KIIVQGRSSKSTKVG---DIMTEENKLITVSPDTKV 150
KII Q S +V D T +N +I +KV
Sbjct: 218 KIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFSKV 253
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 92 VGALVVVKPGEQKSVAGIITE-RDYLRKIIVQG 123
VG +V+V+PGE+ V G++ E Y+ + ++ G
Sbjct: 153 VGDIVIVRPGEKIPVDGVVVEGESYVDESMISG 185
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 26.9 bits (58), Expect = 4.8, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 92 VGALVVVKPGEQKSVAGIITE-RDYLRKIIVQG 123
VG +V+V+PGE+ V G++ E Y+ + ++ G
Sbjct: 231 VGDIVIVRPGEKIPVDGVVVEGESYVDESMISG 263
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 31 RPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH 90
+P+V F +EHG ++ S A KG G+W W TD + + ++ M QH
Sbjct: 288 KPMVIGEFN-------QEHGAGMSSESMFEWAYTKGYSGAWTWSRTDVSWNNQLRGM-QH 339
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
D + G +W+ D V AV + Q+N AL V P ++A
Sbjct: 46 DFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALA 95
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 12 GNIVKSAVLQRIRLVNPMLRPVVS-------SRFESVSSARMEEHGFESTTISDILKAKG 64
GNI + L +++ NP L+ ++S +RF V++ F ++ + + K
Sbjct: 108 GNINQ---LNKLKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNF 164
Query: 65 KGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
G D W + + ++ + + N L++ K E+ AG + + YL I
Sbjct: 165 DGVDLDWEYPVSGGLDGNSKRPEDKQNY-TLLLSKIREKLDAAGAVDGKKYLLTI 218
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 87 MTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
M +++GAL VV E + GIITE+D L+
Sbjct: 249 MVTNDIGALPVV--DENLRIKGIITEKDVLK 277
>pdb|2ZQK|A Chain A, Crystal Structure Of Intimin-Tir68 Complex
pdb|2ZQK|B Chain B, Crystal Structure Of Intimin-Tir68 Complex
pdb|3NCW|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|C Chain C, Crystal Structure Of Ehec O157:h7 Intimin
pdb|3NCW|D Chain D, Crystal Structure Of Ehec O157:h7 Intimin
Length = 189
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 60 LKAKGKGADGSWLWCTTDDTV--YDAVKSMTQHNVGALVV-VKPGEQKSVAGIITERDYL 116
K K G DG++ W + + ++ DA +T + G++V+ G++++V+ I Y+
Sbjct: 38 FKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYM 97
Query: 117 RKI 119
K+
Sbjct: 98 IKV 100
>pdb|3NCX|A Chain A, Crystal Structure Of Ehec O157:h7 Intimin Mutant
pdb|3NCX|B Chain B, Crystal Structure Of Ehec O157:h7 Intimin Mutant
Length = 189
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 60 LKAKGKGADGSWLWCTTDDTV--YDAVKSMTQHNVGALVV-VKPGEQKSVAGIITERDYL 116
K K G DG++ W + + ++ DA +T + G++V+ G++++V+ I Y+
Sbjct: 38 FKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYM 97
Query: 117 RKI 119
K+
Sbjct: 98 IKV 100
>pdb|2ZWK|A Chain A, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|C Chain C, Crystal Structure Of Intimin-Tir90 Complex
pdb|2ZWK|E Chain E, Crystal Structure Of Intimin-Tir90 Complex
Length = 184
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 60 LKAKGKGADGSWLWCTTDDTV--YDAVKSMTQHNVGALVV-VKPGEQKSVAGIITERDYL 116
K K G DG++ W + + ++ DA +T + G++V+ G++++V+ I Y+
Sbjct: 33 FKLKASGGDGTYSWYSENTSIATVDASGKVTLNGKGSVVIKATSGDKQTVSYTIKAPSYM 92
Query: 117 RKI 119
K+
Sbjct: 93 IKV 95
>pdb|2QRV|A Chain A, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|D Chain D, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|E Chain E, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|H Chain H, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
Length = 295
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 100 PGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKL 141
PG + +A + ++ L++ + GR +K +KV I T N +
Sbjct: 182 PGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSI 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,210,173
Number of Sequences: 62578
Number of extensions: 143468
Number of successful extensions: 456
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 42
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)