Query 031190
Match_columns 164
No_of_seqs 151 out of 2343
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3620 Predicted transcriptio 99.5 4.3E-14 9.4E-19 98.4 8.9 143 8-162 13-161 (187)
2 COG2524 Predicted transcriptio 99.5 6.2E-14 1.3E-18 104.6 9.0 96 52-162 170-265 (294)
3 PRK07807 inosine 5-monophospha 99.4 7.4E-13 1.6E-17 109.0 10.1 116 29-162 43-179 (479)
4 COG4109 Predicted transcriptio 99.4 4E-13 8.8E-18 104.3 7.9 116 31-162 158-280 (432)
5 cd04630 CBS_pair_17 The CBS do 99.4 1E-11 2.2E-16 82.9 11.1 89 70-162 2-91 (114)
6 PRK10892 D-arabinose 5-phospha 99.4 9.1E-12 2E-16 98.3 11.7 101 52-162 200-300 (326)
7 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 5.8E-12 1.3E-16 103.6 9.4 118 27-163 40-178 (475)
8 TIGR03520 GldE gliding motilit 99.3 4.6E-12 9.9E-17 102.8 8.7 107 43-163 178-286 (408)
9 cd04619 CBS_pair_6 The CBS dom 99.3 2.9E-11 6.4E-16 80.8 11.1 88 71-162 3-90 (114)
10 PF00571 CBS: CBS domain CBS d 99.3 1.3E-11 2.9E-16 72.7 7.9 56 56-120 1-56 (57)
11 cd04623 CBS_pair_10 The CBS do 99.3 6.8E-11 1.5E-15 78.3 11.5 89 70-162 2-90 (113)
12 cd04643 CBS_pair_30 The CBS do 99.3 3.6E-11 7.9E-16 80.2 9.6 90 70-163 2-95 (116)
13 PRK11543 gutQ D-arabinose 5-ph 99.3 4.6E-11 1E-15 94.0 11.3 97 53-162 196-294 (321)
14 PRK11573 hypothetical protein; 99.3 3.2E-11 7E-16 98.0 10.2 104 50-163 183-286 (413)
15 PRK15094 magnesium/cobalt effl 99.3 1.3E-11 2.9E-16 96.0 7.6 100 50-162 63-163 (292)
16 cd04592 CBS_pair_EriC_assoc_eu 99.3 1.2E-10 2.5E-15 80.7 11.4 90 70-163 2-110 (133)
17 TIGR00400 mgtE Mg2+ transporte 99.3 4.3E-11 9.4E-16 98.3 10.5 95 50-162 127-226 (449)
18 cd04608 CBS_pair_PALP_assoc Th 99.3 7.4E-11 1.6E-15 80.4 10.0 86 70-160 3-88 (124)
19 cd04617 CBS_pair_4 The CBS dom 99.3 1.7E-10 3.6E-15 77.6 11.4 91 70-163 2-92 (118)
20 COG3448 CBS-domain-containing 99.2 2.9E-11 6.3E-16 92.2 8.0 102 51-163 242-347 (382)
21 TIGR00393 kpsF KpsF/GutQ famil 99.2 7.7E-11 1.7E-15 90.4 10.5 96 54-162 155-251 (268)
22 cd04593 CBS_pair_EriC_assoc_ba 99.2 1.9E-10 4.2E-15 76.7 11.2 88 70-162 2-89 (115)
23 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1.3E-10 2.8E-15 77.0 10.3 88 70-162 2-89 (114)
24 cd04600 CBS_pair_HPP_assoc Thi 99.2 1.7E-10 3.6E-15 77.9 10.7 90 70-163 3-101 (124)
25 cd04603 CBS_pair_KefB_assoc Th 99.2 1.7E-10 3.6E-15 76.8 10.4 86 70-162 2-87 (111)
26 cd04641 CBS_pair_28 The CBS do 99.2 2.7E-10 5.8E-15 76.7 10.9 89 70-162 2-96 (120)
27 TIGR01302 IMP_dehydrog inosine 99.2 2E-10 4.3E-15 94.4 11.9 124 30-162 34-175 (450)
28 cd04605 CBS_pair_MET2_assoc Th 99.2 2.9E-10 6.3E-15 75.1 10.7 84 70-162 3-86 (110)
29 PRK01862 putative voltage-gate 99.2 1.3E-10 2.7E-15 98.3 10.8 100 51-162 444-543 (574)
30 cd04632 CBS_pair_19 The CBS do 99.2 2.1E-10 4.6E-15 78.0 10.1 89 70-162 2-102 (128)
31 cd04621 CBS_pair_8 The CBS dom 99.2 2.7E-10 5.9E-15 78.8 10.4 89 70-162 2-112 (135)
32 cd04587 CBS_pair_CAP-ED_DUF294 99.2 4.4E-10 9.6E-15 74.5 11.1 88 70-162 2-89 (113)
33 cd04629 CBS_pair_16 The CBS do 99.2 2.6E-10 5.6E-15 75.7 9.9 89 70-162 2-91 (114)
34 PRK07107 inosine 5-monophospha 99.2 8.4E-11 1.8E-15 97.4 9.0 120 32-162 53-194 (502)
35 cd04801 CBS_pair_M50_like This 99.2 3.7E-10 8E-15 75.2 10.6 88 70-162 2-90 (114)
36 cd04639 CBS_pair_26 The CBS do 99.2 3.1E-10 6.7E-15 75.1 10.1 86 70-162 2-87 (111)
37 cd04624 CBS_pair_11 The CBS do 99.2 4.9E-10 1.1E-14 74.3 11.1 87 70-162 2-88 (112)
38 TIGR01137 cysta_beta cystathio 99.2 2.3E-10 5E-15 94.0 11.3 100 51-162 332-431 (454)
39 cd04596 CBS_pair_DRTGG_assoc T 99.2 2.9E-10 6.3E-15 75.1 9.7 82 70-162 3-84 (108)
40 cd04626 CBS_pair_13 The CBS do 99.2 4E-10 8.7E-15 74.6 10.4 87 70-162 2-88 (111)
41 PTZ00314 inosine-5'-monophosph 99.2 3E-10 6.5E-15 94.2 11.8 124 31-162 51-192 (495)
42 cd04622 CBS_pair_9 The CBS dom 99.2 5.1E-10 1.1E-14 74.2 10.8 88 70-162 2-89 (113)
43 PRK05567 inosine 5'-monophosph 99.2 2.3E-10 5E-15 94.9 10.9 115 31-162 42-179 (486)
44 cd04607 CBS_pair_NTP_transfera 99.2 5.6E-10 1.2E-14 74.2 10.9 86 71-162 4-89 (113)
45 cd04803 CBS_pair_15 The CBS do 99.2 3.7E-10 8E-15 76.0 10.0 89 70-162 2-98 (122)
46 COG2905 Predicted signal-trans 99.2 1.6E-10 3.6E-15 94.7 9.4 99 53-163 148-246 (610)
47 cd04615 CBS_pair_2 The CBS dom 99.2 5.2E-10 1.1E-14 74.2 10.4 87 71-162 3-89 (113)
48 cd04618 CBS_pair_5 The CBS dom 99.2 3.1E-10 6.8E-15 74.3 9.1 71 71-163 3-74 (98)
49 cd04802 CBS_pair_3 The CBS dom 99.2 8E-10 1.7E-14 73.2 11.1 88 70-162 2-89 (112)
50 cd04589 CBS_pair_CAP-ED_DUF294 99.2 9E-10 1.9E-14 72.9 11.2 87 70-162 2-88 (111)
51 cd04800 CBS_pair_CAP-ED_DUF294 99.2 7.4E-10 1.6E-14 73.3 10.6 87 70-162 2-88 (111)
52 cd04609 CBS_pair_PALP_assoc2 T 99.1 6.6E-10 1.4E-14 73.1 9.9 86 69-160 1-86 (110)
53 cd04595 CBS_pair_DHH_polyA_Pol 99.1 8.7E-10 1.9E-14 72.9 10.4 85 70-162 3-87 (110)
54 cd04583 CBS_pair_ABC_OpuCA_ass 99.1 1.1E-09 2.3E-14 72.1 10.7 83 70-162 3-85 (109)
55 cd04625 CBS_pair_12 The CBS do 99.1 1.2E-09 2.5E-14 72.4 10.9 88 70-162 2-89 (112)
56 cd04586 CBS_pair_BON_assoc Thi 99.1 6.8E-10 1.5E-14 76.3 10.0 89 70-162 3-112 (135)
57 cd04582 CBS_pair_ABC_OpuCA_ass 99.1 1.2E-09 2.6E-14 71.7 10.5 81 70-162 2-82 (106)
58 cd04604 CBS_pair_KpsF_GutQ_ass 99.1 1E-09 2.2E-14 72.7 10.1 88 70-162 3-90 (114)
59 cd04611 CBS_pair_PAS_GGDEF_DUF 99.1 1.2E-09 2.6E-14 72.0 10.2 86 70-162 2-87 (111)
60 cd04642 CBS_pair_29 The CBS do 99.1 7E-10 1.5E-14 75.4 9.2 89 70-163 2-103 (126)
61 PLN02274 inosine-5'-monophosph 99.1 7.8E-10 1.7E-14 91.9 11.1 124 31-162 55-196 (505)
62 cd04588 CBS_pair_CAP-ED_DUF294 99.1 1.6E-09 3.6E-14 71.5 10.7 85 70-162 2-86 (110)
63 cd04636 CBS_pair_23 The CBS do 99.1 1.2E-09 2.6E-14 74.8 10.3 88 70-162 2-109 (132)
64 cd04631 CBS_pair_18 The CBS do 99.1 1E-09 2.2E-14 74.1 9.6 88 70-162 2-101 (125)
65 cd04590 CBS_pair_CorC_HlyC_ass 99.1 1.5E-09 3.3E-14 71.7 10.2 85 70-162 2-87 (111)
66 COG1253 TlyC Hemolysins and re 99.1 5E-10 1.1E-14 91.6 9.4 102 50-163 202-303 (429)
67 cd04627 CBS_pair_14 The CBS do 99.1 1.4E-09 3.1E-14 73.5 9.9 89 70-162 2-99 (123)
68 cd04635 CBS_pair_22 The CBS do 99.1 1.2E-09 2.6E-14 73.4 9.3 89 70-162 2-98 (122)
69 cd04599 CBS_pair_GGDEF_assoc2 99.1 2.1E-09 4.5E-14 70.3 9.9 81 70-162 2-82 (105)
70 cd04633 CBS_pair_20 The CBS do 99.1 2.2E-09 4.8E-14 72.1 9.9 88 70-162 2-98 (121)
71 cd04612 CBS_pair_SpoIVFB_EriC_ 99.1 2.9E-09 6.3E-14 70.2 10.3 86 70-162 2-87 (111)
72 COG2239 MgtE Mg/Co/Ni transpor 99.1 6E-10 1.3E-14 90.9 8.3 133 12-162 89-227 (451)
73 cd04640 CBS_pair_27 The CBS do 99.1 1.7E-09 3.7E-14 73.5 9.3 89 70-162 2-101 (126)
74 cd04585 CBS_pair_ACT_assoc2 Th 99.1 3.6E-09 7.7E-14 70.8 10.5 88 70-162 2-98 (122)
75 cd04610 CBS_pair_ParBc_assoc T 99.0 3.8E-09 8.3E-14 69.3 9.8 81 70-162 3-83 (107)
76 cd04594 CBS_pair_EriC_assoc_ar 99.0 3.3E-09 7.2E-14 69.6 9.2 79 71-162 3-81 (104)
77 cd04638 CBS_pair_25 The CBS do 99.0 5.4E-09 1.2E-13 68.7 10.0 83 70-163 2-84 (106)
78 cd04584 CBS_pair_ACT_assoc Thi 99.0 5.6E-09 1.2E-13 70.0 9.8 89 70-162 2-98 (121)
79 KOG2550 IMP dehydrogenase/GMP 99.0 6.4E-10 1.4E-14 88.2 5.9 124 31-162 63-202 (503)
80 cd04620 CBS_pair_7 The CBS dom 99.0 8.7E-09 1.9E-13 68.6 10.5 87 70-162 2-91 (115)
81 cd04634 CBS_pair_21 The CBS do 99.0 6.6E-09 1.4E-13 72.3 10.2 88 70-162 2-120 (143)
82 cd04614 CBS_pair_1 The CBS dom 99.0 5.1E-09 1.1E-13 68.1 8.9 71 70-162 2-72 (96)
83 cd04606 CBS_pair_Mg_transporte 99.0 4.4E-09 9.6E-14 69.5 8.5 78 74-162 2-84 (109)
84 cd04637 CBS_pair_24 The CBS do 99.0 7.8E-09 1.7E-13 69.5 9.8 88 70-162 2-98 (122)
85 cd04598 CBS_pair_GGDEF_assoc T 99.0 4.6E-09 1E-13 70.2 8.3 87 70-161 2-91 (119)
86 cd04601 CBS_pair_IMPDH This cd 99.0 6.5E-09 1.4E-13 68.4 8.8 83 70-162 3-86 (110)
87 cd02205 CBS_pair The CBS domai 99.0 1.6E-08 3.5E-13 66.0 10.6 88 70-162 2-89 (113)
88 COG4536 CorB Putative Mg2+ and 98.9 1E-09 2.3E-14 86.2 4.9 102 51-162 197-298 (423)
89 cd04602 CBS_pair_IMPDH_2 This 98.9 1.3E-08 2.8E-13 67.8 9.6 83 70-162 3-90 (114)
90 cd04591 CBS_pair_EriC_assoc_eu 98.9 2.8E-08 6.2E-13 65.6 9.4 77 70-162 3-82 (105)
91 COG0517 FOG: CBS domain [Gener 98.8 5.2E-08 1.1E-12 64.7 10.0 86 70-162 8-94 (117)
92 COG2524 Predicted transcriptio 98.8 3.6E-08 7.8E-13 74.1 7.3 60 52-120 232-291 (294)
93 cd04603 CBS_pair_KefB_assoc Th 98.7 3.8E-08 8.3E-13 65.3 6.0 56 53-117 55-110 (111)
94 TIGR00400 mgtE Mg2+ transporte 98.7 6E-08 1.3E-12 79.9 7.9 93 52-162 193-285 (449)
95 COG4535 CorC Putative Mg2+ and 98.7 4.5E-08 9.9E-13 72.8 5.9 101 51-163 64-164 (293)
96 PRK14869 putative manganese-de 98.7 2.9E-07 6.4E-12 77.5 11.5 58 54-120 68-125 (546)
97 cd04619 CBS_pair_6 The CBS dom 98.7 1.2E-07 2.5E-12 63.2 7.0 57 52-117 57-113 (114)
98 cd04597 CBS_pair_DRTGG_assoc2 98.6 1.4E-07 3E-12 63.2 6.4 54 54-116 58-111 (113)
99 cd04607 CBS_pair_NTP_transfera 98.5 5.7E-07 1.2E-11 59.5 7.3 56 53-117 57-112 (113)
100 cd04600 CBS_pair_HPP_assoc Thi 98.5 4.4E-07 9.6E-12 61.0 6.8 56 53-117 68-123 (124)
101 cd04615 CBS_pair_2 The CBS dom 98.5 4.8E-07 1E-11 59.8 6.6 58 51-117 55-112 (113)
102 PRK14869 putative manganese-de 98.5 1.2E-06 2.7E-11 73.8 10.6 118 32-163 227-369 (546)
103 cd04618 CBS_pair_5 The CBS dom 98.5 3.2E-07 7E-12 59.8 5.4 56 54-117 41-97 (98)
104 PRK15094 magnesium/cobalt effl 98.5 1.5E-06 3.2E-11 67.8 9.9 94 54-157 133-227 (292)
105 cd04620 CBS_pair_7 The CBS dom 98.5 6.9E-07 1.5E-11 59.3 6.8 56 53-117 57-114 (115)
106 cd04604 CBS_pair_KpsF_GutQ_ass 98.5 8.3E-07 1.8E-11 58.6 7.2 56 53-117 58-113 (114)
107 cd04596 CBS_pair_DRTGG_assoc T 98.5 8.6E-07 1.9E-11 58.3 7.2 56 53-117 52-107 (108)
108 cd04610 CBS_pair_ParBc_assoc T 98.5 8E-07 1.7E-11 58.1 6.9 56 53-117 51-106 (107)
109 cd04585 CBS_pair_ACT_assoc2 Th 98.5 7.9E-07 1.7E-11 59.3 7.0 56 53-117 66-121 (122)
110 cd04617 CBS_pair_4 The CBS dom 98.4 6.3E-07 1.4E-11 60.0 6.2 59 51-116 55-116 (118)
111 cd04630 CBS_pair_17 The CBS do 98.4 9.4E-07 2E-11 58.7 6.9 56 52-117 58-113 (114)
112 cd04627 CBS_pair_14 The CBS do 98.4 6.9E-07 1.5E-11 60.2 6.1 44 70-115 77-120 (123)
113 cd04625 CBS_pair_12 The CBS do 98.4 1.1E-06 2.3E-11 58.0 6.8 56 52-117 56-111 (112)
114 cd04606 CBS_pair_Mg_transporte 98.4 1.3E-06 2.8E-11 57.5 7.2 56 53-117 52-107 (109)
115 cd04803 CBS_pair_15 The CBS do 98.4 1.6E-06 3.4E-11 58.1 7.4 57 52-117 65-121 (122)
116 cd04582 CBS_pair_ABC_OpuCA_ass 98.4 1.3E-06 2.9E-11 56.9 6.9 54 55-117 52-105 (106)
117 TIGR03520 GldE gliding motilit 98.4 3.4E-06 7.4E-11 68.7 10.5 86 71-159 264-350 (408)
118 cd04635 CBS_pair_22 The CBS do 98.4 1.4E-06 3.1E-11 58.3 7.1 57 52-117 65-121 (122)
119 cd04631 CBS_pair_18 The CBS do 98.4 1.4E-06 3.1E-11 58.5 7.1 56 53-117 69-124 (125)
120 cd04611 CBS_pair_PAS_GGDEF_DUF 98.4 1.6E-06 3.4E-11 57.0 7.1 57 52-117 54-110 (111)
121 cd04583 CBS_pair_ABC_OpuCA_ass 98.4 1.5E-06 3.2E-11 56.9 6.7 55 54-117 54-108 (109)
122 cd04587 CBS_pair_CAP-ED_DUF294 98.4 1.2E-06 2.7E-11 57.7 6.4 55 54-117 58-112 (113)
123 cd04639 CBS_pair_26 The CBS do 98.4 1.5E-06 3.3E-11 57.1 6.8 55 53-116 55-109 (111)
124 cd04623 CBS_pair_10 The CBS do 98.4 1.6E-06 3.5E-11 57.0 6.9 55 53-117 58-112 (113)
125 cd04595 CBS_pair_DHH_polyA_Pol 98.4 1.8E-06 3.9E-11 56.8 6.9 56 52-117 54-109 (110)
126 cd04621 CBS_pair_8 The CBS dom 98.4 1.7E-06 3.6E-11 59.7 7.0 55 53-117 80-134 (135)
127 cd04593 CBS_pair_EriC_assoc_ba 98.4 1.6E-06 3.4E-11 57.6 6.6 56 53-117 57-114 (115)
128 cd04586 CBS_pair_BON_assoc Thi 98.4 1.3E-06 2.8E-11 59.9 6.2 55 53-117 80-134 (135)
129 cd04590 CBS_pair_CorC_HlyC_ass 98.4 1.6E-06 3.4E-11 57.1 6.4 53 54-116 57-109 (111)
130 cd04801 CBS_pair_M50_like This 98.4 1.1E-06 2.4E-11 58.2 5.7 58 53-117 56-113 (114)
131 smart00116 CBS Domain in cysta 98.3 2.8E-06 6.1E-11 46.8 6.3 45 71-117 2-46 (49)
132 cd04601 CBS_pair_IMPDH This cd 98.3 2.2E-06 4.8E-11 56.1 6.8 56 53-117 53-109 (110)
133 cd04602 CBS_pair_IMPDH_2 This 98.3 2E-06 4.3E-11 57.1 6.5 55 54-117 57-113 (114)
134 cd04622 CBS_pair_9 The CBS dom 98.3 2.3E-06 5E-11 56.4 6.8 55 54-117 58-112 (113)
135 cd04588 CBS_pair_CAP-ED_DUF294 98.3 2.8E-06 6.1E-11 55.8 7.2 55 54-117 55-109 (110)
136 cd04641 CBS_pair_28 The CBS do 98.3 2E-06 4.3E-11 57.6 6.5 46 70-117 74-119 (120)
137 cd04800 CBS_pair_CAP-ED_DUF294 98.3 2.4E-06 5.2E-11 56.2 6.7 55 53-117 56-110 (111)
138 cd04599 CBS_pair_GGDEF_assoc2 98.3 2.3E-06 4.9E-11 55.7 6.5 54 53-116 50-103 (105)
139 cd04613 CBS_pair_SpoIVFB_EriC_ 98.3 1.9E-06 4.2E-11 56.7 6.2 56 53-117 57-113 (114)
140 cd04614 CBS_pair_1 The CBS dom 98.3 2.1E-06 4.6E-11 55.6 6.2 56 54-117 40-95 (96)
141 PRK11543 gutQ D-arabinose 5-ph 98.3 2.3E-06 5E-11 67.4 7.4 57 52-117 261-317 (321)
142 cd04626 CBS_pair_13 The CBS do 98.3 2.4E-06 5.1E-11 56.3 6.4 55 53-117 56-110 (111)
143 cd04802 CBS_pair_3 The CBS dom 98.3 2.8E-06 6.1E-11 55.9 6.7 56 52-117 56-111 (112)
144 cd04633 CBS_pair_20 The CBS do 98.3 1.9E-06 4.2E-11 57.5 5.9 56 52-117 65-120 (121)
145 cd04629 CBS_pair_16 The CBS do 98.3 2.2E-06 4.8E-11 56.6 6.1 55 53-117 59-113 (114)
146 cd04612 CBS_pair_SpoIVFB_EriC_ 98.3 3.8E-06 8.2E-11 55.1 7.2 55 54-117 56-110 (111)
147 cd04636 CBS_pair_23 The CBS do 98.3 2.7E-06 5.9E-11 58.0 6.6 54 54-117 78-131 (132)
148 cd04624 CBS_pair_11 The CBS do 98.3 3.5E-06 7.5E-11 55.5 7.0 56 53-117 56-111 (112)
149 cd04640 CBS_pair_27 The CBS do 98.3 1.5E-06 3.2E-11 58.9 5.2 57 52-117 62-125 (126)
150 cd04632 CBS_pair_19 The CBS do 98.3 3.3E-06 7.2E-11 57.1 6.9 58 53-117 70-127 (128)
151 cd04605 CBS_pair_MET2_assoc Th 98.3 4E-06 8.7E-11 55.0 7.1 53 55-116 56-108 (110)
152 cd04637 CBS_pair_24 The CBS do 98.3 3.9E-06 8.4E-11 56.2 7.1 55 54-117 67-121 (122)
153 PRK07107 inosine 5-monophospha 98.3 3.4E-06 7.3E-11 70.3 7.8 60 52-118 159-218 (502)
154 cd04589 CBS_pair_CAP-ED_DUF294 98.3 4.2E-06 9.2E-11 55.0 6.9 56 52-117 55-110 (111)
155 cd04643 CBS_pair_30 The CBS do 98.3 3.3E-06 7.1E-11 55.9 6.4 54 53-117 62-115 (116)
156 cd04642 CBS_pair_29 The CBS do 98.3 2.9E-06 6.2E-11 57.4 6.1 46 70-117 80-125 (126)
157 cd04584 CBS_pair_ACT_assoc Thi 98.3 5E-06 1.1E-10 55.4 7.2 56 52-117 65-120 (121)
158 COG3448 CBS-domain-containing 98.2 3E-06 6.6E-11 65.2 6.2 61 52-121 313-373 (382)
159 PRK10892 D-arabinose 5-phospha 98.2 3.9E-06 8.5E-11 66.3 7.2 57 51-117 266-322 (326)
160 PRK07807 inosine 5-monophospha 98.2 5.6E-06 1.2E-10 68.6 7.8 57 54-119 148-204 (479)
161 cd04594 CBS_pair_EriC_assoc_ar 98.2 5.2E-06 1.1E-10 54.2 6.2 54 54-117 50-103 (104)
162 cd04608 CBS_pair_PALP_assoc Th 98.2 1.4E-06 3.1E-11 59.1 3.3 58 52-118 57-123 (124)
163 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 7E-06 1.5E-10 68.0 7.8 58 54-120 146-203 (475)
164 PLN02274 inosine-5'-monophosph 98.2 8.3E-06 1.8E-10 68.1 8.1 63 52-121 161-223 (505)
165 cd04591 CBS_pair_EriC_assoc_eu 98.1 9.8E-06 2.1E-10 53.3 6.0 45 70-117 60-104 (105)
166 COG0517 FOG: CBS domain [Gener 98.1 1.2E-05 2.6E-10 53.2 6.4 52 55-115 63-116 (117)
167 cd04598 CBS_pair_GGDEF_assoc T 98.1 1.3E-05 2.8E-10 53.3 6.0 57 52-117 59-118 (119)
168 cd04634 CBS_pair_21 The CBS do 98.1 1.7E-05 3.7E-10 55.0 6.7 55 53-117 88-142 (143)
169 KOG1764 5'-AMP-activated prote 98.0 2.2E-05 4.9E-10 63.4 8.0 92 70-163 238-334 (381)
170 cd02205 CBS_pair The CBS domai 98.0 2.4E-05 5.3E-10 50.7 6.8 53 56-117 60-112 (113)
171 PRK01862 putative voltage-gate 98.0 1.8E-05 4E-10 67.1 7.6 57 54-119 512-570 (574)
172 COG4109 Predicted transcriptio 98.0 3.6E-05 7.8E-10 60.7 8.4 61 52-121 247-307 (432)
173 cd04638 CBS_pair_25 The CBS do 98.0 3.1E-05 6.8E-10 50.4 6.5 54 54-117 52-105 (106)
174 cd04609 CBS_pair_PALP_assoc2 T 98.0 3E-05 6.4E-10 50.6 6.4 54 53-117 56-109 (110)
175 PRK05567 inosine 5'-monophosph 98.0 6E-05 1.3E-09 62.8 9.6 60 53-120 146-205 (486)
176 PTZ00314 inosine-5'-monophosph 97.9 3.6E-05 7.7E-10 64.2 7.2 59 53-118 158-216 (495)
177 TIGR01302 IMP_dehydrog inosine 97.9 4.2E-05 9E-10 63.2 7.3 59 53-119 142-200 (450)
178 COG3620 Predicted transcriptio 97.9 5E-05 1.1E-09 53.5 6.4 57 51-119 127-183 (187)
179 COG2905 Predicted signal-trans 97.9 3.8E-05 8.2E-10 63.8 6.5 58 52-119 212-269 (610)
180 PRK11573 hypothetical protein; 97.9 0.00012 2.5E-09 59.9 9.4 86 70-157 263-349 (413)
181 TIGR00393 kpsF KpsF/GutQ famil 97.9 4.7E-05 1E-09 58.3 6.5 50 53-111 219-268 (268)
182 COG2239 MgtE Mg/Co/Ni transpor 97.6 0.00012 2.7E-09 60.2 6.0 60 52-120 194-253 (451)
183 PRK10070 glycine betaine trans 97.6 0.00067 1.5E-08 55.3 10.0 78 74-161 290-367 (400)
184 COG1253 TlyC Hemolysins and re 97.6 0.00063 1.4E-08 55.9 9.6 87 70-158 280-367 (429)
185 TIGR01186 proV glycine betaine 97.6 0.0003 6.5E-09 56.6 7.5 56 55-120 303-358 (363)
186 COG4536 CorB Putative Mg2+ and 97.5 0.0011 2.3E-08 53.0 9.8 87 71-159 277-363 (423)
187 TIGR01186 proV glycine betaine 97.4 0.002 4.4E-08 51.8 10.3 82 71-162 252-333 (363)
188 KOG1764 5'-AMP-activated prote 97.3 0.0015 3.3E-08 52.8 8.0 51 70-122 311-361 (381)
189 PRK10070 glycine betaine trans 97.3 0.0014 3.1E-08 53.4 7.8 50 70-122 346-395 (400)
190 TIGR01137 cysta_beta cystathio 97.2 0.00093 2E-08 55.1 6.5 54 53-118 399-452 (454)
191 KOG0474 Cl- channel CLC-7 and 97.0 0.00075 1.6E-08 57.0 3.9 102 52-162 580-721 (762)
192 COG4535 CorC Putative Mg2+ and 96.4 0.026 5.7E-07 42.6 8.0 91 54-157 133-227 (293)
193 KOG2550 IMP dehydrogenase/GMP 96.2 0.0088 1.9E-07 48.4 4.6 57 52-117 169-225 (503)
194 KOG0474 Cl- channel CLC-7 and 96.0 0.016 3.5E-07 49.3 5.5 46 70-117 699-744 (762)
195 cd04592 CBS_pair_EriC_assoc_eu 95.9 0.011 2.4E-07 40.6 3.6 30 70-99 87-116 (133)
196 KOG0475 Cl- channel CLC-3 and 95.8 0.1 2.3E-06 44.5 9.3 104 55-162 544-670 (696)
197 TIGR03415 ABC_choXWV_ATP choli 95.6 0.04 8.6E-07 44.8 6.2 47 70-120 334-380 (382)
198 PF00571 CBS: CBS domain CBS d 95.3 0.016 3.5E-07 33.3 2.3 30 131-162 1-30 (57)
199 KOG2118 Predicted membrane pro 94.7 0.027 5.8E-07 47.3 2.8 104 51-163 201-305 (498)
200 COG1125 OpuBA ABC-type proline 92.8 0.26 5.6E-06 38.0 4.9 60 53-117 248-307 (309)
201 KOG0475 Cl- channel CLC-3 and 91.9 0.58 1.3E-05 40.1 6.3 55 54-118 639-693 (696)
202 KOG0476 Cl- channel CLC-2 and 91.3 0.23 4.9E-06 43.5 3.4 62 51-119 585-646 (931)
203 COG4175 ProV ABC-type proline/ 90.9 0.72 1.6E-05 36.7 5.6 48 70-120 336-383 (386)
204 TIGR03415 ABC_choXWV_ATP choli 88.9 1.3 2.7E-05 36.2 5.8 84 53-162 273-356 (382)
205 KOG0476 Cl- channel CLC-2 and 85.5 1.8 3.9E-05 38.2 5.0 48 70-121 811-858 (931)
206 cd04597 CBS_pair_DRTGG_assoc2 82.9 1.4 3.1E-05 28.8 2.8 32 129-162 58-89 (113)
207 PF08220 HTH_DeoR: DeoR-like h 74.4 1.9 4.1E-05 25.0 1.2 34 2-35 3-36 (57)
208 COG4175 ProV ABC-type proline/ 71.3 4.6 0.0001 32.3 3.0 83 54-160 274-356 (386)
209 PF05198 IF3_N: Translation in 70.3 16 0.00035 22.6 4.8 28 92-121 12-39 (76)
210 PF08279 HTH_11: HTH domain; 68.5 2.5 5.5E-05 23.9 0.8 32 3-34 4-36 (55)
211 PF14044 NETI: NETI protein 64.0 11 0.00024 21.9 2.9 22 143-164 3-24 (57)
212 PF09012 FeoC: FeoC like trans 60.8 3.9 8.6E-05 24.5 0.7 34 2-35 3-36 (69)
213 cd06404 PB1_aPKC PB1 domain is 57.7 13 0.00029 23.4 2.6 29 69-97 50-78 (83)
214 PF13412 HTH_24: Winged helix- 55.8 11 0.00024 20.5 2.0 29 3-31 7-35 (48)
215 PF14827 Cache_3: Sensory doma 54.7 16 0.00034 24.1 2.9 18 93-112 92-109 (116)
216 smart00550 Zalpha Z-DNA-bindin 50.8 12 0.00026 22.4 1.6 32 3-34 10-43 (68)
217 COG2216 KdpB High-affinity K+ 50.7 24 0.00051 30.3 3.8 38 77-117 412-449 (681)
218 PF06163 DUF977: Bacterial pro 48.4 15 0.00033 25.0 2.0 31 2-32 15-45 (127)
219 KOG3235 Subunit of the major N 45.6 50 0.0011 23.8 4.2 58 52-115 5-62 (193)
220 COG1476 Predicted transcriptio 44.0 19 0.00041 21.8 1.7 35 5-39 6-40 (68)
221 PF13404 HTH_AsnC-type: AsnC-t 43.8 27 0.00059 18.7 2.2 28 3-30 7-34 (42)
222 PF02743 Cache_1: Cache domain 41.7 29 0.00064 20.9 2.5 17 94-112 18-34 (81)
223 COG1349 GlpR Transcriptional r 41.6 15 0.00032 28.1 1.3 34 2-35 8-41 (253)
224 smart00594 UAS UAS domain. 40.5 37 0.0008 22.6 3.0 64 45-117 44-119 (122)
225 PF02796 HTH_7: Helix-turn-hel 40.4 22 0.00047 19.3 1.5 19 14-32 22-40 (45)
226 COG1654 BirA Biotin operon rep 36.8 24 0.00052 22.0 1.5 23 12-34 18-40 (79)
227 PF12324 HTH_15: Helix-turn-he 36.4 13 0.00028 23.1 0.2 33 2-34 27-59 (77)
228 PRK10638 glutaredoxin 3; Provi 36.2 1E+02 0.0022 18.7 4.5 41 71-115 29-69 (83)
229 PRK00028 infC translation init 35.1 56 0.0012 23.7 3.3 37 78-115 35-71 (177)
230 PF13365 Trypsin_2: Trypsin-li 34.5 25 0.00054 22.5 1.4 19 89-109 102-120 (120)
231 cd02958 UAS UAS family; UAS is 34.5 1.3E+02 0.0028 19.4 5.1 67 44-119 33-107 (114)
232 COG0290 InfC Translation initi 34.3 1.3E+02 0.0029 21.7 5.0 28 91-120 17-44 (176)
233 TIGR02844 spore_III_D sporulat 34.0 44 0.00095 20.9 2.3 33 3-36 10-42 (80)
234 PRK10681 DNA-binding transcrip 33.9 29 0.00062 26.5 1.8 34 2-35 10-43 (252)
235 COG4189 Predicted transcriptio 31.2 49 0.0011 25.4 2.5 29 3-31 27-55 (308)
236 PRK04424 fatty acid biosynthes 31.1 26 0.00057 25.4 1.1 34 2-35 10-43 (185)
237 TIGR00168 infC translation ini 30.2 68 0.0015 23.0 3.1 36 79-115 24-59 (165)
238 PF13673 Acetyltransf_10: Acet 30.2 91 0.002 19.6 3.6 30 81-113 33-62 (117)
239 CHL00199 infC translation init 30.1 78 0.0017 23.1 3.4 24 93-118 25-48 (182)
240 PF12840 HTH_20: Helix-turn-he 29.5 38 0.00083 19.4 1.5 29 3-31 14-42 (61)
241 PF05225 HTH_psq: helix-turn-h 29.2 32 0.0007 18.7 1.0 30 1-31 5-34 (45)
242 PRK10434 srlR DNA-bindng trans 29.0 29 0.00062 26.5 1.1 33 2-34 8-40 (256)
243 PF01325 Fe_dep_repress: Iron 28.7 49 0.0011 19.2 1.8 29 4-32 13-41 (60)
244 smart00420 HTH_DEOR helix_turn 27.5 48 0.001 17.7 1.6 31 4-34 5-35 (53)
245 PF14420 Clr5: Clr5 domain 27.4 64 0.0014 18.3 2.1 21 143-163 16-37 (54)
246 PF00944 Peptidase_S3: Alphavi 27.0 69 0.0015 22.3 2.5 20 91-112 106-125 (158)
247 PF13812 PPR_3: Pentatricopept 25.9 73 0.0016 15.1 2.0 15 150-164 20-34 (34)
248 PF13596 PAS_10: PAS domain; P 25.7 83 0.0018 19.8 2.7 16 93-110 84-99 (106)
249 PF04703 FaeA: FaeA-like prote 25.5 30 0.00065 20.5 0.5 31 4-34 5-36 (62)
250 smart00344 HTH_ASNC helix_turn 25.3 64 0.0014 20.6 2.1 32 3-34 7-38 (108)
251 COG2345 Predicted transcriptio 24.9 55 0.0012 24.6 1.9 29 3-31 15-43 (218)
252 PRK11179 DNA-binding transcrip 24.8 65 0.0014 22.4 2.2 31 3-33 13-43 (153)
253 smart00418 HTH_ARSR helix_turn 24.7 49 0.0011 18.2 1.3 30 4-34 2-31 (66)
254 PF01022 HTH_5: Bacterial regu 24.2 45 0.00097 18.1 1.0 28 4-32 7-34 (47)
255 PRK04140 hypothetical protein; 23.9 1.7E+02 0.0036 23.4 4.5 91 6-98 132-226 (317)
256 cd03028 GRX_PICOT_like Glutare 23.8 1.9E+02 0.0041 17.9 4.1 41 71-116 40-81 (90)
257 cd01760 RBD Ubiquitin-like dom 23.7 1.4E+02 0.003 18.1 3.2 24 141-164 13-37 (72)
258 PHA00673 acetyltransferase dom 23.6 1.6E+02 0.0035 20.8 4.0 36 78-115 40-75 (154)
259 PF06971 Put_DNA-bind_N: Putat 23.5 34 0.00073 19.3 0.4 22 13-34 28-49 (50)
260 PF06297 PET: PET Domain; Int 23.5 63 0.0014 21.4 1.7 34 70-105 20-53 (106)
261 PF00325 Crp: Bacterial regula 23.1 34 0.00075 17.4 0.4 19 13-31 2-20 (32)
262 smart00455 RBD Raf-like Ras-bi 22.7 1.5E+02 0.0032 17.8 3.2 24 141-164 13-37 (70)
263 PRK09802 DNA-binding transcrip 22.3 48 0.001 25.6 1.2 33 2-34 20-52 (269)
264 PHA00738 putative HTH transcri 22.0 86 0.0019 20.8 2.2 29 3-31 16-44 (108)
265 COG1356 tfx Transcriptional re 21.8 63 0.0014 22.2 1.5 69 10-90 20-88 (143)
266 smart00346 HTH_ICLR helix_turn 21.7 67 0.0015 19.7 1.6 31 4-34 10-41 (91)
267 cd01818 TIAM1_RBD Ubiquitin do 21.6 1.5E+02 0.0033 18.4 3.1 24 141-164 13-37 (77)
268 PF03948 Ribosomal_L9_C: Ribos 21.5 90 0.002 19.6 2.2 22 101-122 23-44 (87)
269 PF13098 Thioredoxin_2: Thiore 20.8 1.1E+02 0.0024 19.3 2.6 29 87-117 78-110 (112)
270 cd00361 arom_aa_hydroxylase Bi 20.8 2.1E+02 0.0044 21.7 4.2 61 80-154 49-110 (221)
271 COG3355 Predicted transcriptio 20.6 73 0.0016 21.8 1.7 29 7-35 36-64 (126)
272 PRK10906 DNA-binding transcrip 20.6 53 0.0011 25.1 1.1 33 2-34 8-40 (252)
273 PF01047 MarR: MarR family; I 20.4 58 0.0013 18.2 1.0 29 4-32 8-36 (59)
274 PRK11169 leucine-responsive tr 20.3 87 0.0019 22.0 2.1 30 3-32 18-47 (164)
275 cd06407 PB1_NLP A PB1 domain i 20.1 1.1E+02 0.0025 19.0 2.4 27 69-95 50-76 (82)
No 1
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.54 E-value=4.3e-14 Score=98.44 Aligned_cols=143 Identities=24% Similarity=0.330 Sum_probs=109.1
Q ss_pred HhhcCCCChHHHHHHhCccccccccccccccccc--cchhhh----hcCcccccHHHHhhhcCCCCCCCceEecCCCcHH
Q 031190 8 FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESV--SSARME----EHGFESTTISDILKAKGKGADGSWLWCTTDDTVY 81 (164)
Q Consensus 8 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~ 81 (164)
.|..-.++..++|+..+.+.+-+...-....+.. +..++. ...-..++++.+|.. +++.|.+++++.
T Consensus 13 ~Rk~LGitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s-------pvv~v~pdDsi~ 85 (187)
T COG3620 13 RRKELGITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS-------PVVSVSPDDSIS 85 (187)
T ss_pred HHHHcCCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC-------CeeEECchhhHH
Confidence 3444579999999999986665443332222211 001111 111145789999998 799999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCC
Q 031190 82 DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHM 161 (164)
Q Consensus 82 ~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~ 161 (164)
+++++|..+++|.+||+ + +++++|-||..++.+..+..........++++|.. .+++|++++++..+.+++..|.
T Consensus 86 ~vv~lM~~~g~SQlPVi--~-~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~~ 160 (187)
T COG3620 86 DVVNLMRDKGISQLPVI--E-EDKVVGSITENDIVRALLEGMESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEHP 160 (187)
T ss_pred HHHHHHHHcCCccCcee--e-CCeeeeeecHHHHHHHHhccccchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhCC
Confidence 99999999999999999 4 49999999999998877654344556789999999 6999999999999999998875
Q ss_pred C
Q 031190 162 L 162 (164)
Q Consensus 162 ~ 162 (164)
.
T Consensus 161 A 161 (187)
T COG3620 161 A 161 (187)
T ss_pred e
Confidence 3
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.52 E-value=6.2e-14 Score=104.65 Aligned_cols=96 Identities=25% Similarity=0.431 Sum_probs=85.7
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v 131 (164)
.+.+|+++|++ ++.++.+++|+.+|.++|.++++.+.||+ |+ ++++|++|..|+..++. ++ ..+.+|
T Consensus 170 Pk~~V~~~~s~-------~~i~v~~d~tl~eaak~f~~~~i~GaPVv--d~-dk~vGiit~~dI~~aia-~g--~~~~kV 236 (294)
T COG2524 170 PKEKVKNLMSK-------KLITVRPDDTLREAAKLFYEKGIRGAPVV--DD-DKIVGIITLSDIAKAIA-NG--NLDAKV 236 (294)
T ss_pred CcchhhhhccC-------CceEecCCccHHHHHHHHHHcCccCCcee--cC-CceEEEEEHHHHHHHHH-cC--CccccH
Confidence 45789999998 69999999999999999999999999999 54 59999999999976654 43 257899
Q ss_pred ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+++|++ +++++.+|+.+.||+++|..+++
T Consensus 237 ~~~M~k--~vitI~eDe~i~dAir~M~~~nV 265 (294)
T COG2524 237 SDYMRK--NVITINEDEDIYDAIRLMNKNNV 265 (294)
T ss_pred HHHhcc--CCceEcCchhHHHHHHHHHhcCc
Confidence 999999 59999999999999999998876
No 3
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=7.4e-13 Score=109.00 Aligned_cols=116 Identities=28% Similarity=0.400 Sum_probs=97.5
Q ss_pred ccccccccccccccchhhh----hcC-----------------cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHH
Q 031190 29 MLRPVVSSRFESVSSARME----EHG-----------------FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM 87 (164)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~----~~~-----------------~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~ 87 (164)
.-.|.+++.||++++..|+ +.+ +...++.++|.. ++.++.+++++.+++++|
T Consensus 43 l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~-------~pvtv~~d~tv~eA~~~m 115 (479)
T PRK07807 43 TTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD-------TPVTLSPDDTVGDALALL 115 (479)
T ss_pred cccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc-------CCeEECCCCCHHHHHHHH
Confidence 3458999999999998887 233 133566677776 699999999999999999
Q ss_pred HHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 88 TQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 88 ~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.+++++.+||+ |++++++|+||.+|+.. . ....++.++|++ +++++++++++.+++++|.++++
T Consensus 116 ~~~~~s~l~VV--D~~gklvGIVT~rDL~~-~------~~~~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i 179 (479)
T PRK07807 116 PKRAHGAVVVV--DEEGRPVGVVTEADCAG-V------DRFTQVRDVMST--DLVTLPAGTDPREAFDLLEAARV 179 (479)
T ss_pred HhcCCceEEEE--CCCCeEEEEEeHHHHhc-C------ccCCCHHHhccC--CceEECCCCcHHHHHHHHHhcCC
Confidence 99999999999 78899999999999832 1 123679999998 59999999999999999998876
No 4
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.43 E-value=4e-13 Score=104.31 Aligned_cols=116 Identities=27% Similarity=0.364 Sum_probs=103.5
Q ss_pred ccccccccccccchhhhhcCccc-------ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC
Q 031190 31 RPVVSSRFESVSSARMEEHGFES-------TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ 103 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~-------~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~ 103 (164)
.|.++++||+.+.+.|...++.+ .+|.|+|.+-. +..++.+++++.+-.++..+.+++++||+ |+.
T Consensus 158 lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~-----~~~yL~~~d~v~d~~~l~~kt~~sRfPVv--n~~ 230 (432)
T COG4109 158 LPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLE-----DTSYLRETDTVEDWLDLVEKTGHSRFPVV--NRS 230 (432)
T ss_pred CceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhccccc-----cceeccccccHHHHHHHHHHcCCCcccee--ccc
Confidence 39999999999998888776532 68999999754 48999999999999999999999999999 899
Q ss_pred CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 104 KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 104 ~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.+++|+|+.+|++. ..++.++..+|++ ++.+|.+.+++..+.+.|.+.++
T Consensus 231 ~kvvGvVt~rDv~~-------~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~i 280 (432)
T COG4109 231 MKVVGVVTMRDVLD-------KKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGI 280 (432)
T ss_pred ceEEEEEEehhhhc-------CCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccc
Confidence 99999999999965 2467899999999 59999999999999999998876
No 5
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1e-11 Score=82.90 Aligned_cols=89 Identities=34% Similarity=0.483 Sum_probs=75.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT 148 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~ 148 (164)
++.++.+++++.++++.|.+++++.+||+ |++ ++++|+|+.+|+++.+..........++.++|.+ +++++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 77 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDM 77 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCC
Confidence 48899999999999999999999999999 666 8999999999997765543322234678999987 589999999
Q ss_pred CHHHHHHHHHhCCC
Q 031190 149 KVLRAMQLMTGHML 162 (164)
Q Consensus 149 ~l~e~~~~m~~~~~ 162 (164)
++.+++..|.+++.
T Consensus 78 ~l~~~~~~~~~~~~ 91 (114)
T cd04630 78 DIKYCARLMERTNI 91 (114)
T ss_pred CHHHHHHHHHHcCC
Confidence 99999999988765
No 6
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.37 E-value=9.1e-12 Score=98.28 Aligned_cols=101 Identities=24% Similarity=0.386 Sum_probs=84.0
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v 131 (164)
..++|+++|.+.+ ++.++++++++.+|++.|.+++...+||+ |++|+++|+||.+|+.+ +...+....+.++
T Consensus 200 ~~~~V~dim~~~~-----~~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~-~~~~~~~~~~~~v 271 (326)
T PRK10892 200 LLLRVSDIMHTGD-----EIPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRR-VFDMGIDLRQASI 271 (326)
T ss_pred ccCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHH-HHhcCCCcccCCH
Confidence 4568999998511 38999999999999999999888888889 78899999999999855 3333222335689
Q ss_pred ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.++|++ ++.++.+++++.++++.|.++++
T Consensus 272 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 300 (326)
T PRK10892 272 ADVMTP--GGIRVRPGILAVDALNLMQSRHI 300 (326)
T ss_pred HHhcCC--CCEEECCCCCHHHHHHHHHHCCC
Confidence 999998 58999999999999999998876
No 7
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.34 E-value=5.8e-12 Score=103.64 Aligned_cols=118 Identities=27% Similarity=0.374 Sum_probs=96.3
Q ss_pred ccccccccccccccccchhhhh----cC-c----------------ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHH
Q 031190 27 NPMLRPVVSSRFESVSSARMEE----HG-F----------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVK 85 (164)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~----~~-~----------------~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~ 85 (164)
.....|.+++.||++++..|+. .+ + ..+++.++|.. ++.++.+++++.++++
T Consensus 40 ~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~qae~v~~VKv~eim~~-------~pvtv~p~~tI~eA~~ 112 (475)
T TIGR01303 40 TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAVKQTVAFVKSRDLVLD-------TPITLAPHDTVSDAMA 112 (475)
T ss_pred CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHhhcchhhcccc-------CCeEECCCCCHHHHHH
Confidence 3345699999999999999983 21 1 23455677766 6999999999999999
Q ss_pred HHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 86 SMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 86 ~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
+|.+++++.+||+ | +++++|+||.+|+.. . ....+++++|++ +++++++++++.+++++|.++++.
T Consensus 113 lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~-~------~~~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~ 178 (475)
T TIGR01303 113 LIHKRAHGAAVVI--L-EDRPVGLVTDSDLLG-V------DRFTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRD 178 (475)
T ss_pred HHHhcCCeEEEEE--E-CCEEEEEEEHHHhhc-C------CCCCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCC
Confidence 9999999999999 5 478999999999832 1 134679999998 599999999999999999998763
No 8
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.34 E-value=4.6e-12 Score=102.82 Aligned_cols=107 Identities=10% Similarity=0.178 Sum_probs=88.1
Q ss_pred chhhhhc--CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 43 SARMEEH--GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 43 ~~~~~~~--~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
+..|... .|.+.+|+|+|+++.+ +.+++.++++.++++.+.+++++++||++ ++.++++|+|+.+|++....
T Consensus 178 E~~~i~~vl~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 178 EQKILQGIVSFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred HHHHHHHHhccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHhc
Confidence 3444433 4688999999998764 99999999999999999999999999994 33478999999999976331
Q ss_pred HcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 121 VQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 121 ~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
. ...++.++|++ +.+|++++++.++++.|.+++.|
T Consensus 252 --~---~~~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~ 286 (408)
T TIGR03520 252 --K---KNFDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNH 286 (408)
T ss_pred --c---CCCCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCce
Confidence 1 23457889987 89999999999999999988754
No 9
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.9e-11 Score=80.83 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=75.3
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l 150 (164)
+.++.+++++.+|++.|.+++...+||+ |++|+++|+|+.+|+++............++.++|.+ ++.++.+++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 78 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLL 78 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCH
Confidence 7889999999999999999999999999 7889999999999997654321222345689999988 58899999999
Q ss_pred HHHHHHHHhCCC
Q 031190 151 LRAMQLMTGHML 162 (164)
Q Consensus 151 ~e~~~~m~~~~~ 162 (164)
.++++.|.+++.
T Consensus 79 ~~a~~~m~~~~~ 90 (114)
T cd04619 79 HDVWQVMKQRGL 90 (114)
T ss_pred HHHHHHHHHcCC
Confidence 999999998876
No 10
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.32 E-value=1.3e-11 Score=72.72 Aligned_cols=56 Identities=27% Similarity=0.510 Sum_probs=52.0
Q ss_pred HHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 56 v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
|+++|.+ ++.++++++++.++++.|.+++++++||+ |++|+++|+||.+|+++.+.
T Consensus 1 v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP-------PPITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS-------SSEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcC-------CCEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence 5789988 69999999999999999999999999999 88999999999999987653
No 11
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=6.8e-11 Score=78.31 Aligned_cols=89 Identities=42% Similarity=0.602 Sum_probs=74.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.++.++.++++.|.+.+++.+||+ |++++++|+++.+|+++.+..........++.++|.. ++.+++++++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 77 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDT 77 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCc
Confidence 48889999999999999999999999999 7779999999999997755432222224578999977 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 78 ~~~~l~~~~~~~~ 90 (113)
T cd04623 78 VDEAMALMTERRF 90 (113)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988765
No 12
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.6e-11 Score=80.17 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=74.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCc----ccccccccccCCCeEEEc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----STKVGDIMTEENKLITVS 145 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~----~~~v~~vm~~~~~~~~v~ 145 (164)
++.++++++++.++++.|.+++++.+||+ |++++++|+|+.+|+++.......... ..++.++|.+ ++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~ 77 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVII 77 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceec
Confidence 48899999999999999999999999999 778999999999999765432111111 4678999998 589999
Q ss_pred CCCCHHHHHHHHHhCCCC
Q 031190 146 PDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 146 ~~~~l~e~~~~m~~~~~~ 163 (164)
+++++.++++.|.++++.
T Consensus 78 ~~~~l~~a~~~~~~~~~~ 95 (116)
T cd04643 78 DDADIEEILHLLIDQPFL 95 (116)
T ss_pred CCCCHHHHHHHHhcCCce
Confidence 999999999999887653
No 13
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.28 E-value=4.6e-11 Score=94.01 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=83.6
Q ss_pred cccHHHHhhhcCCCCCCC--ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190 53 STTISDILKAKGKGADGS--WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~--~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~ 130 (164)
..+|+++|.+ + +.++++++++.+|++.|..++...+||+ |++|+++|+|+.+|+.+.+. .+. ....+
T Consensus 196 ~~~V~~im~~-------~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~-~~~-~~~~~ 264 (321)
T PRK11543 196 LNKVHHLMRR-------DDAIPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLV-GGG-ALTTP 264 (321)
T ss_pred HhHHHHHhcc-------CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHh-CCC-CcCCc
Confidence 5789999998 5 8999999999999999998888999999 78899999999999865443 221 23567
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+.++|++ ++.++.+++++.++++.|.+++.
T Consensus 265 v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 294 (321)
T PRK11543 265 VNEAMTR--GGTTLQAQSRAIDAKEILMKRKI 294 (321)
T ss_pred HHHhcCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence 9999998 58999999999999999998875
No 14
>PRK11573 hypothetical protein; Provisional
Probab=99.27 E-value=3.2e-11 Score=98.00 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=85.9
Q ss_pred CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (164)
Q Consensus 50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~ 129 (164)
.|.+.+|+++|+++++ +.+++.++++.++++.+.+++++++||++ ++.+.++|+|+.+|++.... .+......
T Consensus 183 ~l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~~-~~~~~~~~ 255 (413)
T PRK11573 183 DLEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLMT-EKKEFTKE 255 (413)
T ss_pred ccCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHhh-ccCcCCHH
Confidence 4688999999999885 99999999999999999999999999995 44588999999999986432 21111223
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
.+.+++++ +.+|++++++.++++.|.+++.|
T Consensus 256 ~l~~~~r~---~~~Vpe~~~l~~lL~~~~~~~~~ 286 (413)
T PRK11573 256 NMLRAADE---IYFVPEGTPLSTQLVKFQRNKKK 286 (413)
T ss_pred HHHhhccC---CeEeCCCCcHHHHHHHHHhcCCe
Confidence 45577777 89999999999999999988754
No 15
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.27 E-value=1.3e-11 Score=95.98 Aligned_cols=100 Identities=12% Similarity=0.289 Sum_probs=84.1
Q ss_pred CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcc
Q 031190 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS 128 (164)
Q Consensus 50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~ 128 (164)
.|.+.+|+++|+++.+ +.+++.++++.++++.+..++++++||+ +++ ++++|+|+.+|++.... .. ...
T Consensus 63 ~l~~~~V~diMtpr~~-----i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~~-~~--~~~ 132 (292)
T PRK15094 63 DIADQRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMR-SD--AEA 132 (292)
T ss_pred ccCCCEEeEEccchHH-----EEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHhh-cc--CCc
Confidence 4688999999998653 8999999999999999999999999999 554 78999999999975432 11 123
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
..+.++|++ +.+|++++++.++++.|.+++.
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~ 163 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRY 163 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCC
Confidence 458899987 6799999999999999998875
No 16
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.27 E-value=1.2e-10 Score=80.66 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=71.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCC----------cccccccccc---
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----------KSTKVGDIMT--- 136 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~----------~~~~v~~vm~--- 136 (164)
++.++.+++++.+|++.|..++++.+||+ |++|+++|+|+..|+++.+....... ....+.++|.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 48999999999999999999999999999 78899999999999987654322110 0011344553
Q ss_pred ------cCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 137 ------EENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 137 ------~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
. +++++.+++++.+|+++|.++++.
T Consensus 80 ~~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~ 110 (133)
T cd04592 80 SYGGQEC--GLWTCTPDTDLTTAKKLMEAKGVK 110 (133)
T ss_pred hhcccCC--CCEEECCCCCHHHHHHHHHHcCCC
Confidence 4 588999999999999999998874
No 17
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.26 E-value=4.3e-11 Score=98.29 Aligned_cols=95 Identities=16% Similarity=0.258 Sum_probs=82.2
Q ss_pred CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH-----cCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC
Q 031190 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR 124 (164)
Q Consensus 50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~-----~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~ 124 (164)
+|.+.+++++|++ ++.+++++.|+.++++.+++ +....+||+ |++++++|+|+.+|++..
T Consensus 127 ~~~e~tvg~iMt~-------~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a------ 191 (449)
T TIGR00400 127 SYSDDSAGRIMTI-------EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA------ 191 (449)
T ss_pred CCCcchHHHhCcC-------ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC------
Confidence 5788999999997 69999999999999999985 455788999 788999999999998641
Q ss_pred CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 125 SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 125 ~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
..+.+++++|++ +++++++++++.++++.|.++++
T Consensus 192 -~~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~ 226 (449)
T TIGR00400 192 -KPEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDF 226 (449)
T ss_pred -CCCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCC
Confidence 235679999998 58899999999999999998875
No 18
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.26 E-value=7.4e-11 Score=80.41 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=74.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+++.+++||+ |++++++|+|+.+|+++.+.... ...+.+++++|++ ++.++.++++
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~-~~~~~~v~~im~~--~~~~v~~~~~ 77 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGK-VQPSDPVSKALYK--QFKRVNKNDT 77 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhc-cCCCCcHHHHhhc--cceecCCCCC
Confidence 58999999999999999999999999999 77899999999999987654332 2356799999999 5999999999
Q ss_pred HHHHHHHHHhC
Q 031190 150 VLRAMQLMTGH 160 (164)
Q Consensus 150 l~e~~~~m~~~ 160 (164)
+.++.++|..+
T Consensus 78 ~~~v~~~~~~~ 88 (124)
T cd04608 78 LGKLSRILETD 88 (124)
T ss_pred HHHHHhhcccC
Confidence 99999976543
No 19
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=1.7e-10 Score=77.59 Aligned_cols=91 Identities=27% Similarity=0.439 Sum_probs=75.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.+|++.|..++..++||+ |++++++|+|+..|+++..... ......++.++|.+...+.+++++++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTRMPNITTTTPEES 78 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCCCCCcEEECCCCc
Confidence 47899999999999999999999999999 7779999999999997755422 22235678889974114889999999
Q ss_pred HHHHHHHHHhCCCC
Q 031190 150 VLRAMQLMTGHMLL 163 (164)
Q Consensus 150 l~e~~~~m~~~~~~ 163 (164)
+.+++++|.+++.+
T Consensus 79 l~~~~~~~~~~~~~ 92 (118)
T cd04617 79 VLEAAKKLIEHQVD 92 (118)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999998764
No 20
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.25 E-value=2.9e-11 Score=92.23 Aligned_cols=102 Identities=28% Similarity=0.410 Sum_probs=87.3
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC----CCC
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSS 126 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~----~~~ 126 (164)
+.+.+..+||++ +++++++++++.+|.+++.++++..+||+ |++.+++|+|+.+|+++.+.... +..
T Consensus 242 ~~~LtcadIMSr-------dVvtv~~~ts~dhA~~ll~~H~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~ 312 (382)
T COG3448 242 MGELTCADIMSR-------DVVTVSTDTSIDHARKLLQEHRIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRFL 312 (382)
T ss_pred hccccHHHhcCc-------cceecCCcCChHHHHHHHHHcCccccccc--ccccceeeeeeHHHHhhccCcchHHHhhcc
Confidence 467899999998 79999999999999999999999999999 88999999999999976321100 112
Q ss_pred cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 127 KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 127 ~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
....++.+|++ ++.++.++++..+++..+++.+.|
T Consensus 313 ~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H 347 (382)
T COG3448 313 RPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLH 347 (382)
T ss_pred CCCcccccccC--cceeecCCCcHHHHHHHhhcCCcc
Confidence 34578999998 599999999999999999988775
No 21
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.25 E-value=7.7e-11 Score=90.43 Aligned_cols=96 Identities=22% Similarity=0.402 Sum_probs=83.0
Q ss_pred ccHHHHhhhcCCCCCCC-ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190 54 TTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~-~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~ 132 (164)
++|+++|.+ + +.++.+++++.++++.|.+.+++++||+ |++|+++|+|+..|+++... .+ .....++.
T Consensus 155 ~~v~~im~~-------~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~-~~~~~~v~ 223 (268)
T TIGR00393 155 VKVKDLMQT-------TDLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GG-GSLKSEVR 223 (268)
T ss_pred hhHHHHhCC-------CCCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cC-CcccCcHH
Confidence 688999987 5 8999999999999999999999999999 77899999999999976432 22 22457899
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 133 DIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
++|.+ ++.++.+++++.+++++|.+++.
T Consensus 224 ~im~~--~~~~v~~~~~l~~a~~~m~~~~~ 251 (268)
T TIGR00393 224 DFMTL--GPKTFKLDALLLEALEFLERRKI 251 (268)
T ss_pred HhCCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence 99988 58899999999999999999875
No 22
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.25 E-value=1.9e-10 Score=76.74 Aligned_cols=88 Identities=25% Similarity=0.366 Sum_probs=74.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+.+.+.+||+ |++|+++|+|+.+|+++... ........++.++|.. ++.++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~--~~~~v~~~~~ 76 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATP--PLLTVHPDEP 76 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccC--CceEECCCCC
Confidence 57889999999999999999999999999 77899999999999976443 2222234568899988 5999999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.+++++|.+++.
T Consensus 77 l~~~l~~~~~~~~ 89 (115)
T cd04593 77 LAHALDRMASRGL 89 (115)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998875
No 23
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=1.3e-10 Score=77.03 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=74.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|...+++.+||+ |++|+++|+|+..|+++... +.......++.++|++ ++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~ 76 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTK--PPVVVYPEDS 76 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccC--CCcEEcCCCC
Confidence 58899999999999999999999999999 77799999999999965432 3222223689999988 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+.+.
T Consensus 77 ~~~~~~~~~~~~~ 89 (114)
T cd04613 77 LEDALKKFEDSDY 89 (114)
T ss_pred HHHHHHHHhhCCc
Confidence 9999999987764
No 24
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.7e-10 Score=77.89 Aligned_cols=90 Identities=32% Similarity=0.481 Sum_probs=74.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------CCcccccccccccCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK 140 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------~~~~~~v~~vm~~~~~ 140 (164)
++.++.+++++.++.+.|.+.+++++||+ +++|+++|+|+.++++........ .....++.++|.+ +
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 78 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP--P 78 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC--C
Confidence 68999999999999999999999999999 777999999999999764432110 0124478999988 5
Q ss_pred eEEEcCCCCHHHHHHHHHhCCCC
Q 031190 141 LITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
+.++++++++.++++.|.+++..
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~ 101 (124)
T cd04600 79 VVTVRPDTPIAELVPLLADGGHH 101 (124)
T ss_pred CeeeCCCCcHHHHHHHHHhcCCC
Confidence 99999999999999999887653
No 25
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.7e-10 Score=76.84 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=72.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.+|++.|..++.+.+||+ |++|+++|+|+..|+.+ .. .....+.++.++|.. ++.++.++++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~-~~--~~~~~~~~v~~~~~~--~~~~v~~~~~ 74 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLE-IG--PNDYETLKVCEVYIV--PVPIVYCDSK 74 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHh-hc--cccccccChhheeec--CCcEECCCCc
Confidence 37889999999999999999999999999 77899999999999965 21 111224579999987 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 75 l~~al~~m~~~~~ 87 (111)
T cd04603 75 VTDLLRIFRETEP 87 (111)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998875
No 26
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=2.7e-10 Score=76.75 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=69.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc------ccccCCCeEE
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD------IMTEENKLIT 143 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~------vm~~~~~~~~ 143 (164)
++.++++++++.+|++.|.+++++.+||+ |++|+++|+++.+|++..............+.+ +|.. ++.+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 77 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRT 77 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeE
Confidence 58899999999999999999999999999 778999999999999754322111111122332 3334 4789
Q ss_pred EcCCCCHHHHHHHHHhCCC
Q 031190 144 VSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 144 v~~~~~l~e~~~~m~~~~~ 162 (164)
+++++++.++++.|.+++.
T Consensus 78 v~~~~~l~~~~~~m~~~~~ 96 (120)
T cd04641 78 CSPDDCLRTIFDLIVKARV 96 (120)
T ss_pred EcCCCcHHHHHHHHHhcCc
Confidence 9999999999999998875
No 27
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.21 E-value=2e-10 Score=94.42 Aligned_cols=124 Identities=25% Similarity=0.421 Sum_probs=93.3
Q ss_pred cccccccccccccchhhh----hc---C-c-ccccHHH---HhhhcCCCCC---CCceEecCCCcHHHHHHHHHHcCCCe
Q 031190 30 LRPVVSSRFESVSSARME----EH---G-F-ESTTISD---ILKAKGKGAD---GSWLWCTTDDTVYDAVKSMTQHNVGA 94 (164)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~----~~---~-~-~~~~v~d---im~~~~~~~~---~~~~~v~~~~tl~~a~~~~~~~~~~~ 94 (164)
..|.++++|+++++..|+ .. + + .++++.+ .+..-.++.+ .++.++++++++.++++.|.+++++.
T Consensus 34 ~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~ 113 (450)
T TIGR01302 34 NIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVKRAENGIISDPVTISPETTVADVLELMERKGISG 113 (450)
T ss_pred CCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCE
Confidence 358999999999998886 11 2 1 2333321 1111112222 26899999999999999999999999
Q ss_pred EEEEecCCC---CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 95 LVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 95 ipVv~~d~~---~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+||+ |++ ++++|+|+.+|++.. . ....++.++|++. +++++++++++.++++.|.+++.
T Consensus 114 lpVv--d~~~~~~~lvGIVt~rDL~~~---~---~~~~~V~dvm~~~-~~~~V~~~~sl~eal~~m~~~~~ 175 (450)
T TIGR01302 114 IPVV--EDGDMTGKLVGIITKRDIRFV---K---DKGKPVSEVMTRE-EVITVPEGIDLEEALKVLHEHRI 175 (450)
T ss_pred EEEE--eCCCCCCeEEEEEEHHHHhhh---h---cCCCCHHHhhCCC-CCEEECCCCcHHHHHHHHHHcCC
Confidence 9999 555 799999999999531 1 1356899999831 49999999999999999998875
No 28
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.9e-10 Score=75.10 Aligned_cols=84 Identities=30% Similarity=0.432 Sum_probs=72.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+++++++||+ |++|+++|+++.+++++.+. . ...++.++|.+ ++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~-~----~~~~~~~~~~~--~~~~v~~~~~ 73 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAVA-R----DKKSVEDIMTR--NVITATPDEP 73 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHHh-h----CccCHHHhcCC--CCeEECCCCc
Confidence 58899999999999999999999999999 77899999999999976432 1 12358899977 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 74 l~~~~~~~~~~~~ 86 (110)
T cd04605 74 IDVAARKMERHNI 86 (110)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999988764
No 29
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.21 E-value=1.3e-10 Score=98.27 Aligned_cols=100 Identities=13% Similarity=0.215 Sum_probs=85.6
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~ 130 (164)
+..++++|+|.+ ++.++++++++.++.+.+.+++.+.+||+ |++++++|+|+.+|+.+.+.... ...+.+
T Consensus 444 L~~~~V~dim~~-------~~~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~~~~~ 513 (574)
T PRK01862 444 LRTTQMRELIQP-------AQTVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DTTDKT 513 (574)
T ss_pred HhhCcHHHHhcC-------CCceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-ccccch
Confidence 467899999987 58899999999999999999999999999 78899999999999966443222 223467
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+.++|++ ++.++++++++.++++.|.+++.
T Consensus 514 v~dim~~--~~~~v~~d~~L~~al~~m~~~~~ 543 (574)
T PRK01862 514 AADYAHT--PFPLLTPDMPLGDALEHFMAFQG 543 (574)
T ss_pred HHHhccC--CCeeECCCCCHHHHHHHHHhcCC
Confidence 8999988 58899999999999999998876
No 30
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=2.1e-10 Score=78.02 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=73.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC------------CCCccccccccccc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG------------RSSKSTKVGDIMTE 137 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~------------~~~~~~~v~~vm~~ 137 (164)
++.++.+++++.++++.|.+.+.+.+||+ |++|+++|+|+.+|+++.+.... ......++.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 47889999999999999999999999999 77899999999999976432110 00123578899987
Q ss_pred CCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 138 ENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 138 ~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+++++++++++.++++.|.+.+.
T Consensus 80 --~~~~v~~~~~l~~~l~~~~~~~~ 102 (128)
T cd04632 80 --PVITASPNDSVRDAVDRMLENDD 102 (128)
T ss_pred --CCceECCCCcHHHHHHHHHhCCC
Confidence 58999999999999999988765
No 31
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=2.7e-10 Score=78.75 Aligned_cols=89 Identities=28% Similarity=0.395 Sum_probs=74.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCC----------------------c
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----------------------K 127 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~----------------------~ 127 (164)
++.++.+++++.+|++.|.+++.+.+||+ |++|+++|+|+..|+++......... .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 47889999999999999999999999999 78899999999999977543211110 1
Q ss_pred ccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 128 STKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 128 ~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
..++.++|.+ ++.++.+++++.++++.|.+++.
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 112 (135)
T cd04621 80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANI 112 (135)
T ss_pred cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCC
Confidence 4578999988 58899999999999999988765
No 32
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.20 E-value=4.4e-10 Score=74.51 Aligned_cols=88 Identities=28% Similarity=0.398 Sum_probs=73.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+++.+.+||+ ++ ++++|+|+..|++..+...+......++.++|.+ ++.+++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~ 76 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTP 76 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCC
Confidence 47889999999999999998889999999 65 9999999999997655433222222678999987 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 77 l~~~~~~~~~~~~ 89 (113)
T cd04587 77 VLEALHLMVQGKF 89 (113)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988765
No 33
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2.6e-10 Score=75.75 Aligned_cols=89 Identities=27% Similarity=0.407 Sum_probs=74.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-CCCcccccccccccCCCeEEEcCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-RSSKSTKVGDIMTEENKLITVSPDT 148 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-~~~~~~~v~~vm~~~~~~~~v~~~~ 148 (164)
++.++++++++.++++.|.+++++.+||+ |++++++|+|+..++++.+.... ......++.++|.. ++.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~ 77 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDD 77 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCC
Confidence 58889999999999999998889999999 78899999999999976554321 11235678999988 588999999
Q ss_pred CHHHHHHHHHhCCC
Q 031190 149 KVLRAMQLMTGHML 162 (164)
Q Consensus 149 ~l~e~~~~m~~~~~ 162 (164)
++.++++.|.+++.
T Consensus 78 ~l~~~~~~~~~~~~ 91 (114)
T cd04629 78 SIVDLAQLMLKAKP 91 (114)
T ss_pred cHHHHHHHHHHhCC
Confidence 99999999988764
No 34
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=8.4e-11 Score=97.44 Aligned_cols=120 Identities=30% Similarity=0.343 Sum_probs=93.6
Q ss_pred cccccccccccchhhh-----hcCcc----c----------ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCC
Q 031190 32 PVVSSRFESVSSARME-----EHGFE----S----------TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV 92 (164)
Q Consensus 32 ~~~~~~~~~~~~~~~~-----~~~~~----~----------~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~ 92 (164)
|.+++.|++++...|+ ..+|. + ..|+++|...-. +++++++++++.+|++.|.++++
T Consensus 53 P~~SatmdtvtgdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~----~~~tV~pd~tl~eAl~~m~~~~~ 128 (502)
T PRK07107 53 PLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVV----SDSNLTPDNTLADVLDLKEKTGH 128 (502)
T ss_pred ChHHHHHHHHhhHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcC----CCCEeCCCCcHHHHHHHHHhcCC
Confidence 8888999998888777 22232 2 245566642101 46799999999999999999999
Q ss_pred CeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 93 GALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 93 ~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+.+||+ |+ +++++|+||.+|+.. . . ...+.+++++|++.++++++++++++.+|+++|.++++
T Consensus 129 ~~vpVV--D~~~~~gkLvGIVT~~DLr~-~--~--~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i 194 (502)
T PRK07107 129 STVAVT--EDGTAHGKLLGIVTSRDYRI-S--R--MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKL 194 (502)
T ss_pred CeEEEE--eCCCcCCEEEEEEEcHHhhc-c--c--cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCC
Confidence 999999 54 589999999999842 1 1 23467899999964358899999999999999999876
No 35
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=3.7e-10 Score=75.22 Aligned_cols=88 Identities=22% Similarity=0.228 Sum_probs=72.0
Q ss_pred CceEecCCCcHHHHHHHHHHcC-CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT 148 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~-~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~ 148 (164)
++.++++++++.+|++.|..++ .+.+||+ |++|+++|+|+.+|++.... . .....++.++|....+++++.+++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~--~~~~~~v~~~~~~~~~~~~v~~~~ 76 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPT-S--QWAQTTVIQVMTPAAKLVTVLSEE 76 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHH-h--hccccchhhhhcccccceEECCCC
Confidence 5889999999999999987665 8899999 77899999999999976543 1 112467889997522367899999
Q ss_pred CHHHHHHHHHhCCC
Q 031190 149 KVLRAMQLMTGHML 162 (164)
Q Consensus 149 ~l~e~~~~m~~~~~ 162 (164)
++.++++.|.+++.
T Consensus 77 ~l~~a~~~~~~~~~ 90 (114)
T cd04801 77 SLAEVLKLLEEQGL 90 (114)
T ss_pred cHHHHHHHHHHCCC
Confidence 99999999998875
No 36
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=3.1e-10 Score=75.10 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=73.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+.+.+.+||+ +++|+++|+|+..++++.+... ....++.++|.. ++.+++++++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~---~~~~~v~~~~~~--~~~~i~~~~~ 74 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALAEG---GPDAPVRGVMRR--DFPTVSPSAT 74 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHHhc---CCCCcHHHHhcC--CCcEECCCCc
Confidence 48889999999999999998889999999 7779999999999997654322 134579999987 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 75 ~~~~~~~~~~~~~ 87 (111)
T cd04639 75 LDAVLRLMQQGGA 87 (111)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988764
No 37
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=4.9e-10 Score=74.26 Aligned_cols=87 Identities=37% Similarity=0.546 Sum_probs=73.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++++++++.++++.|.+.+++++||+ |++++++|+|+..|+++.+. .+. ....++.++|.. .++++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~-~~~-~~~~~v~~~~~~--~~~~v~~~~~ 75 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVA-AGI-DLDTPVSEIMTR--DLVTVDPDEP 75 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHh-ccC-CCccCHHHhccC--CCEEECCCCc
Confidence 47889999999999999999999999999 77799999999999976544 222 234678899988 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.+++..|.+++.
T Consensus 76 ~~~~~~~~~~~~~ 88 (112)
T cd04624 76 VAEAAKLMRKNNI 88 (112)
T ss_pred HHHHHHHHHHcCc
Confidence 9999999987654
No 38
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.19 E-value=2.3e-10 Score=94.04 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=84.5
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~ 130 (164)
+...+++++|.+ ++.++.+++++.++++.|.+++++.+||+ |++++++|+|+.+|+++.+.... ...+.+
T Consensus 332 l~~~~v~~im~~-------~~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~-~~~~~~ 401 (454)
T TIGR01137 332 LKNATVKDLHLP-------APVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGK-ANPDDA 401 (454)
T ss_pred hccCCHHHhCcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccC-CCcCCC
Confidence 356889999987 59999999999999999999999999999 77889999999999977554321 223457
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+.++|.+ ++.++++++++.+++++|.+++.
T Consensus 402 v~~im~~--~~~~v~~~~~l~~a~~~~~~~~~ 431 (454)
T TIGR01137 402 VSKVMSK--KFIQIGEGEKLSDLSKFLEKNSS 431 (454)
T ss_pred HHHhcCC--CCeEECCcCcHHHHHHHHHHCCe
Confidence 9999988 58899999999999999987653
No 39
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=2.9e-10 Score=75.11 Aligned_cols=82 Identities=30% Similarity=0.353 Sum_probs=72.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++++++++.++++.|.+.+.+.+||+ |++|+++|+|+..+++.. ....++.++|.. .+.+++++++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~v~~~~~ 71 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGK-------DPDTTIEKVMTK--NPITVNPKTS 71 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhcc-------cccccHHHHhcC--CCeEECCCCC
Confidence 58999999999999999999999999999 788999999999999541 134679999987 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 72 l~~~~~~~~~~~~ 84 (108)
T cd04596 72 VASVAHMMIWEGI 84 (108)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988765
No 40
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=4e-10 Score=74.62 Aligned_cols=87 Identities=18% Similarity=0.293 Sum_probs=73.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++++++++.++++.|.+++++++||+ |++|+++|+++..|++.... .. ...+.++.++|.+ ++.++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~-~~~~~~v~~~~~~--~~~~v~~~~~ 75 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FE-SFLEKKVFNIVSQ--DVFYVNEEDT 75 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hc-ccccCcHHHHhcC--CcEEEcCCCc
Confidence 47889999999999999999999999999 77899999999999965332 11 1124578899988 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.+++..|.+++.
T Consensus 76 l~~~~~~~~~~~~ 88 (111)
T cd04626 76 IDEALDIMREKQI 88 (111)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988865
No 41
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.19 E-value=3e-10 Score=94.19 Aligned_cols=124 Identities=20% Similarity=0.289 Sum_probs=94.2
Q ss_pred ccccccccccccchhhh----hcC-c----ccccHHHHhh---hcCCCCC---CCceEecCCCcHHHHHHHHHHcCCCeE
Q 031190 31 RPVVSSRFESVSSARME----EHG-F----ESTTISDILK---AKGKGAD---GSWLWCTTDDTVYDAVKSMTQHNVGAL 95 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~~~----~~~-~----~~~~v~dim~---~~~~~~~---~~~~~v~~~~tl~~a~~~~~~~~~~~i 95 (164)
.|.+++.|+++++..|+ +.| + .++++.+... ..+++++ .++.++++++++.+++++|.+++++.+
T Consensus 51 ~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~v 130 (495)
T PTZ00314 51 IPIVSSPMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSI 130 (495)
T ss_pred CceeecCccccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEE
Confidence 58899999999998888 222 2 3444433221 1122222 278999999999999999999999999
Q ss_pred EEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 96 VVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 96 pVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
||+ |+ +++++|+|+.+|+. .. ...+.++.++|++..+++++++++++.+++++|.+++.
T Consensus 131 pVv--d~~~~~gkLvGIVt~~DL~-~~-----~~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i 192 (495)
T PTZ00314 131 LIT--VDGKVGGKLLGIVTSRDID-FV-----KDKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRK 192 (495)
T ss_pred EEE--eCCccCCeEEEEEEHHHHh-hc-----ccCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCC
Confidence 999 55 37999999999984 21 12357899999862248899999999999999998876
No 42
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=5.1e-10 Score=74.19 Aligned_cols=88 Identities=36% Similarity=0.607 Sum_probs=72.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++.+.|.+++++++||+ ++ |+++|+++..|++.+....+......++.++|.. ++.++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 76 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDD 76 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCC
Confidence 48899999999999999999999999999 66 9999999999986443333222223358999988 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+.+.
T Consensus 77 ~~~~~~~~~~~~~ 89 (113)
T cd04622 77 VDEAARLMREHQV 89 (113)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987765
No 43
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.18 E-value=2.3e-10 Score=94.85 Aligned_cols=115 Identities=29% Similarity=0.427 Sum_probs=92.9
Q ss_pred ccccccccccccchhhh----hcC---c--ccc-------------cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHH
Q 031190 31 RPVVSSRFESVSSARME----EHG---F--EST-------------TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT 88 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~~~----~~~---~--~~~-------------~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~ 88 (164)
.|.++++|+++++..|+ +.+ + .++ .++++|.. ++.++++++++.++++.|.
T Consensus 42 ~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk~~~dim~~-------~~v~i~~~~tv~ea~~~m~ 114 (486)
T PRK05567 42 IPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRSESGVVT-------DPVTVTPDTTLAEALALMA 114 (486)
T ss_pred cCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhhhhhhcccC-------CCeEeCCCCCHHHHHHHHH
Confidence 58899999999988886 111 1 111 33455554 6999999999999999999
Q ss_pred HcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccc-cCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 89 QHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT-EENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 89 ~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~-~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+++++.+||+ |++++++|+|+.+|+... .....++.++|+ . +++++++++++.++++.|.++++
T Consensus 115 ~~~~~~lpVv--d~~g~lvGiVt~~DL~~~------~~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~ 179 (486)
T PRK05567 115 RYGISGVPVV--DENGKLVGIITNRDVRFE------TDLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRI 179 (486)
T ss_pred HhCCCEEEEE--ccCCEEEEEEEHHHhhhc------ccCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCC
Confidence 9999999999 788999999999998531 123468999998 4 58999999999999999988875
No 44
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=5.6e-10 Score=74.22 Aligned_cols=86 Identities=22% Similarity=0.387 Sum_probs=73.4
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l 150 (164)
+.++.+++++.++++.|...+...+||+ |++|+++|+|+.+|+++.+. ... ....++.++|.+ .+.++++++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~-~~~~~v~~~~~~--~~~~v~~~~~l 77 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALL-KGL-SLDDPVSEVMNR--NPITAKVGSSR 77 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHh-cCC-CcCCCHHHhhcC--CCEEEcCCCCH
Confidence 7889999999999999999899999999 77899999999999966443 222 234578999988 58899999999
Q ss_pred HHHHHHHHhCCC
Q 031190 151 LRAMQLMTGHML 162 (164)
Q Consensus 151 ~e~~~~m~~~~~ 162 (164)
.++++.|.+++.
T Consensus 78 ~~~~~~~~~~~~ 89 (113)
T cd04607 78 EEILALMRERSI 89 (113)
T ss_pred HHHHHHHHHCCC
Confidence 999999998865
No 45
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=3.7e-10 Score=75.99 Aligned_cols=89 Identities=28% Similarity=0.473 Sum_probs=74.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCC--------CcccccccccccCCCe
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS--------SKSTKVGDIMTEENKL 141 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~--------~~~~~v~~vm~~~~~~ 141 (164)
++.++.+++++.++.+.|.+.+++.+||+ +++|+++|+++.+++++........ ....++.++|.. ++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 77 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DV 77 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CC
Confidence 48889999999999999999999999999 7779999999999997644321111 135678899988 58
Q ss_pred EEEcCCCCHHHHHHHHHhCCC
Q 031190 142 ITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 142 ~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.++++++++.++++.|.+++.
T Consensus 78 ~~v~~~~~~~~~~~~~~~~~~ 98 (122)
T cd04803 78 LTVTPDTPLREAAEIMVENKI 98 (122)
T ss_pred eEeCCCCcHHHHHHHHHHcCC
Confidence 999999999999999988765
No 46
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.17 E-value=1.6e-10 Score=94.69 Aligned_cols=99 Identities=26% Similarity=0.453 Sum_probs=89.6
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~ 132 (164)
...+++++.. ++++|++..++.+|...|..++.+.+.|+ +++++..||||.+|+..++...+. ....+|+
T Consensus 148 ~trv~~~~~~-------~~~~v~~~~~i~~aa~km~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~-~~~~~V~ 217 (610)
T COG2905 148 LTRVGEVKTL-------PAVTVSPQASIQDAARKMKDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGR-SKTQKVS 217 (610)
T ss_pred HHHHHHHhcC-------CCcccCccCcHHHHHHHHHhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCC-Ccccchh
Confidence 3577888887 69999999999999999999999999999 788999999999999988887664 4678999
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 133 DIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
++|+. ++++|+.++.+.||+-.|.+++++
T Consensus 218 evmT~--p~~svd~~~~~feAml~m~r~~I~ 246 (610)
T COG2905 218 EVMTS--PVISVDRGDFLFEAMLMMLRNRIK 246 (610)
T ss_pred hhhcc--CceeecCcchHHHHHHHHHHhCCc
Confidence 99999 699999999999999999999874
No 47
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=5.2e-10 Score=74.22 Aligned_cols=87 Identities=26% Similarity=0.343 Sum_probs=73.5
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l 150 (164)
+..+.+++++.++++.|.+.+.+.+||+ |++++++|+|+..|+++..... ......++.++|.+ ++.+++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~-~~~~~~~i~~~~~~--~~~~v~~~~~l 77 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALES-EELKDAKVREVMNS--PVITIDANDSI 77 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhh-hhhcCCcHHHhccC--CceEECCCCcH
Confidence 7889999999999999999999999999 7789999999999997644322 12245678999987 59999999999
Q ss_pred HHHHHHHHhCCC
Q 031190 151 LRAMQLMTGHML 162 (164)
Q Consensus 151 ~e~~~~m~~~~~ 162 (164)
.++++.|.+++.
T Consensus 78 ~~~~~~~~~~~~ 89 (113)
T cd04615 78 AKARWLMSNNNI 89 (113)
T ss_pred HHHHHHHHHcCC
Confidence 999999987764
No 48
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=3.1e-10 Score=74.28 Aligned_cols=71 Identities=14% Similarity=0.320 Sum_probs=62.3
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCC-CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~-~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
+.++++++++.+|.+.|.+++++++||+ |+ +|+++|+||.+|+.+.. . +.++.++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~-------~-------------~~~v~~~~~ 60 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILIL-------R-------------LVSIHPERS 60 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhe-------e-------------eEEeCCCCc
Confidence 8899999999999999999999999999 66 48999999999995421 0 568999999
Q ss_pred HHHHHHHHHhCCCC
Q 031190 150 VLRAMQLMTGHMLL 163 (164)
Q Consensus 150 l~e~~~~m~~~~~~ 163 (164)
+.+|+++|.+++++
T Consensus 61 l~~a~~~m~~~~~~ 74 (98)
T cd04618 61 LFDAALLLLKNKIH 74 (98)
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999988763
No 49
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=8e-10 Score=73.23 Aligned_cols=88 Identities=35% Similarity=0.621 Sum_probs=73.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++++++++.++++.|.+.+.+.+||+ |+ ++++|+++..|+++.+..........++.++|.+ ++.++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 76 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVV--DN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNAS 76 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEE--EC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCC
Confidence 47889999999999999999899999999 54 4999999999998755433211235678999987 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 77 l~~~~~~~~~~~~ 89 (112)
T cd04802 77 LNEAAKLMAKHGI 89 (112)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988775
No 50
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.16 E-value=9e-10 Score=72.93 Aligned_cols=87 Identities=34% Similarity=0.463 Sum_probs=73.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
+++.++++.++.++++.|.+.+...+||+ |+ ++++|+++..|+++... ........++.++|.+ ++.+++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~~ 75 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATF--PLITVDPDDF 75 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCC--CcEEECCCCc
Confidence 47889999999999999999899999999 66 89999999999976443 2222245678999988 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 76 l~~~~~~~~~~~~ 88 (111)
T cd04589 76 LFNALLLMTRHRI 88 (111)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999988765
No 51
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.16 E-value=7.4e-10 Score=73.27 Aligned_cols=87 Identities=33% Similarity=0.586 Sum_probs=73.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++++++++.++.+.|.+++++.+||+ |+ ++++|+|+..+++..+...+ .....++.++|.. ++++++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~--~~~~v~~~~~ 75 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEG-LDPDTPVSEVMTA--PPITIPPDAT 75 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccC-CCccCCHHHHhCC--CCeEECCCCc
Confidence 48889999999999999998889999999 65 99999999999976544322 2234678899988 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 76 l~~~~~~~~~~~~ 88 (111)
T cd04800 76 VFEALLLMLERGI 88 (111)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998865
No 52
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.15 E-value=6.6e-10 Score=73.14 Aligned_cols=86 Identities=34% Similarity=0.470 Sum_probs=71.5
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT 148 (164)
Q Consensus 69 ~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~ 148 (164)
|++.++.+++++.++++.|.+++++++||+ ++ ++++|+++..|+++.+. ........++.++|.+ ++.++++++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~--~~~~v~~~~ 74 (110)
T cd04609 1 GDVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALI-EGKAKFSLPVREVMGE--PLPTVDPDA 74 (110)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHh-ccccccCcCHHHHhcC--CCceeCCCC
Confidence 368899999999999999999999999999 66 89999999999976543 2212124678899987 588999999
Q ss_pred CHHHHHHHHHhC
Q 031190 149 KVLRAMQLMTGH 160 (164)
Q Consensus 149 ~l~e~~~~m~~~ 160 (164)
++.+++.+|.+.
T Consensus 75 ~l~~~~~~~~~~ 86 (110)
T cd04609 75 PIEELSELLDRG 86 (110)
T ss_pred cHHHHHHHHHhC
Confidence 999999999773
No 53
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=8.7e-10 Score=72.88 Aligned_cols=85 Identities=28% Similarity=0.359 Sum_probs=72.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.+++.+.++.++.+.|.+++++++||+ |+ |+++|+|+..|+++.. ... ....++.++|.+ ++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~--~~~~~~~~~~~~--~~~~v~~~~~ 74 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHG--LGHAPVKDYMST--DVVTVPPDTP 74 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hcc--cccCcHHHHhcC--CCEEECCCCc
Confidence 58899999999999999999899999999 66 9999999999996543 222 245789999988 5999999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.+++.+|.+++.
T Consensus 75 l~~~~~~~~~~~~ 87 (110)
T cd04595 75 LSEVQELMVEHDI 87 (110)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988764
No 54
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.14 E-value=1.1e-09 Score=72.09 Aligned_cols=83 Identities=25% Similarity=0.355 Sum_probs=71.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++..+++++++.++++.|.++++.++||+ |++++++|+|+..|++.... ...++.++|.. .+.+++++++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~------~~~~v~~~~~~--~~~~v~~~~~ 72 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAYK------EAKSLEDIMLE--DVFTVQPDAS 72 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHhh------cCCcHhHhhcC--CceEECCCCc
Confidence 48889999999999999999999999999 77799999999999965321 23578899988 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 73 ~~~~~~~~~~~~~ 85 (109)
T cd04583 73 LRDVLGLVLKRGP 85 (109)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988654
No 55
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=1.2e-09 Score=72.40 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=71.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
.+.++.+++++.++++.|.++++..++|. + +|+++|+++..|+++.+..........++.++|+. .+.+++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 76 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVM--E-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDS 76 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEe--e-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCC
Confidence 47889999999999999988888888777 4 48999999999997655422112234679999988 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 77 l~~a~~~m~~~~~ 89 (112)
T cd04625 77 IDEVRRLMVERHL 89 (112)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988765
No 56
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=6.8e-10 Score=76.34 Aligned_cols=89 Identities=28% Similarity=0.455 Sum_probs=74.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------------------CCcc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------------------SSKS 128 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------------------~~~~ 128 (164)
++.++.+++++.++++.|.++++.++||+ |++++++|+|+..|+++....... ....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 58899999999999999999999999999 788999999999999764322100 0123
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.++.++|.+ ++.++.+++++.+++..|.+++.
T Consensus 81 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 112 (135)
T cd04586 81 RKVADVMTR--PVVTVGEDTPLAEVAELMEEHRI 112 (135)
T ss_pred CCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCC
Confidence 578899988 58999999999999999998876
No 57
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.13 E-value=1.2e-09 Score=71.69 Aligned_cols=81 Identities=26% Similarity=0.289 Sum_probs=70.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.+++++.++.+|++.|.+.+.+.+||+ |++|+++|+++..|+++. ...++.++|.+ .+.++.++++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~--------~~~~~~~~~~~--~~~~~~~~~~ 69 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARA--------SGGCCGDHAEP--FKVTVSVDDD 69 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHh--------cccchhhhccc--CCEEECCCCC
Confidence 48899999999999999998889999999 778999999999999652 11357889987 4788999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 70 ~~~~~~~~~~~~~ 82 (106)
T cd04582 70 LRIVLSRMFAHDM 82 (106)
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998875
No 58
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.12 E-value=1e-09 Score=72.74 Aligned_cols=88 Identities=27% Similarity=0.425 Sum_probs=73.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.+.+.+++.+||+ |++|+++|+|+..++++.+. ........++.++|.+ ++.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~ 77 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTR--NPKTIDPDAL 77 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhcc--CCeEECCCCc
Confidence 47889999999999999988889999999 77899999999999976543 3222234579999988 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 78 ~~~~~~~~~~~~~ 90 (114)
T cd04604 78 AAEALELMEENKI 90 (114)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987754
No 59
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.12 E-value=1.2e-09 Score=72.05 Aligned_cols=86 Identities=36% Similarity=0.571 Sum_probs=72.4
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+.+++.+||+ ++ ++++|+++.+|+++... .+.. ...++.++|.+ ++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~--~~~~~~~~~~ 74 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLA-SGPD-LQTPVGEVMSS--PLLTVPADTS 74 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHh-cCCC-CCcCHHHhcCC--CceEECCCCC
Confidence 47889999999999999999889999999 55 89999999999976543 2211 45678999988 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+.+.
T Consensus 75 l~~~l~~~~~~~~ 87 (111)
T cd04611 75 LYDARQLMREHGI 87 (111)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987764
No 60
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=7e-10 Score=75.38 Aligned_cols=89 Identities=21% Similarity=0.308 Sum_probs=69.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcc-------------cccccccc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS-------------TKVGDIMT 136 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~-------------~~v~~vm~ 136 (164)
.+.++++++++.+|++.|.+++++++||+ |++|+++|+|+..|+++...... .... ....+.|.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKS 78 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhccccccccc
Confidence 37899999999999999999999999999 77899999999999976442111 1011 11224555
Q ss_pred cCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 137 EENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 137 ~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
. ++.++++++++.+++++|.+++.+
T Consensus 79 ~--~~~~v~~~~~l~~a~~~~~~~~~~ 103 (126)
T cd04642 79 R--PLITCTPSSTLKEVITKLVANKVH 103 (126)
T ss_pred C--CCeEECCCCcHHHHHHHHHHhCCc
Confidence 5 588999999999999999988764
No 61
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.11 E-value=7.8e-10 Score=91.85 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=91.9
Q ss_pred ccccccccccccchhhh----hcC-c----ccccHHHHhh---hcCCCCC---CCceEecCCCcHHHHHHHHHHcCCCeE
Q 031190 31 RPVVSSRFESVSSARME----EHG-F----ESTTISDILK---AKGKGAD---GSWLWCTTDDTVYDAVKSMTQHNVGAL 95 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~~~----~~~-~----~~~~v~dim~---~~~~~~~---~~~~~v~~~~tl~~a~~~~~~~~~~~i 95 (164)
.|.+++.|+++++..|+ ..| + .+.+..+... ....+++ .+++++++++++.+++++|.+++++.+
T Consensus 55 ~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~l 134 (505)
T PLN02274 55 IPCVSSPMDTVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSV 134 (505)
T ss_pred CCEeccCCcccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceE
Confidence 48888999999988887 222 1 2222222110 0001111 269999999999999999999999999
Q ss_pred EEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 96 VVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 96 pVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
||+ |+ +++++|+||.+|+.. .. ..+.+|.++|++.++++++++++++.+++++|.+++.
T Consensus 135 pVv--D~~~~~GklvGIVT~~DL~~-v~-----~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~ 196 (505)
T PLN02274 135 CVT--ETGTMGSKLLGYVTKRDWDF-VN-----DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKK 196 (505)
T ss_pred EEE--eCCCcCCeEEEEEEHHHHhh-cc-----ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCC
Confidence 999 55 489999999999843 21 2467899999974347899999999999999998875
No 62
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.11 E-value=1.6e-09 Score=71.47 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=72.0
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+.+++++||+ ++ ++++|+++..|+++... .+. ...++.++|.. ++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~~-~~~--~~~~v~~~~~~--~~~~v~~~~~ 73 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAIA-RGL--ELAKVKDVMTK--DVITIDEDEQ 73 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHHh-ccc--cccCHHHHhcC--CceEECCCCC
Confidence 58899999999999999999999999999 66 89999999999976432 221 23678899987 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|...+.
T Consensus 74 ~~~~~~~~~~~~~ 86 (110)
T cd04588 74 LYDAIRLMNKHNV 86 (110)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987764
No 63
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=1.2e-09 Score=74.80 Aligned_cols=88 Identities=31% Similarity=0.424 Sum_probs=72.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcc--------------------c
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS--------------------T 129 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~--------------------~ 129 (164)
++.++.+++++.++++.|...+++++||+ |++++++|+|+..++++.+.... .... .
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIYKGK-GLFYVTLLYSVIFLDESKIKKLLGK 78 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHhccC-CcccccccccccccchHHHHHHcCC
Confidence 58899999999999999998899999999 77899999999999976543221 1111 2
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
++.++|.+ ++.++.+++++.+++..|.+.+.
T Consensus 79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~ 109 (132)
T cd04636 79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNI 109 (132)
T ss_pred CHHHhccC--CceEECCCCcHHHHHHHHHHCCC
Confidence 78889988 58999999999999999987764
No 64
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=1e-09 Score=74.13 Aligned_cols=88 Identities=28% Similarity=0.383 Sum_probs=73.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCC-----------ccccccccccc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSS-----------KSTKVGDIMTE 137 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~-----------~~~~v~~vm~~ 137 (164)
++.++.++.++.+++++|.+.+++.+||+ |++ |+++|+|+..|+++.+. ..... ...++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLG-GGEKFNKIKTGNGLEAINEPVRSIMTR 78 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhh-ccchhccccccccchhhhcCHHHHhcC
Confidence 48889999999999999999999999999 666 99999999999976543 21110 13478899987
Q ss_pred CCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 138 ENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 138 ~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+++++++++++.++++.|.+.+.
T Consensus 79 --~~~~v~~~~~l~~~~~~~~~~~~ 101 (125)
T cd04631 79 --NVITITPDDSIKDAAELMLEKRV 101 (125)
T ss_pred --CceEeCCCCcHHHHHHHHHHcCC
Confidence 59999999999999999988765
No 65
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.10 E-value=1.5e-09 Score=71.75 Aligned_cols=85 Identities=15% Similarity=0.272 Sum_probs=70.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT 148 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~ 148 (164)
++.++++++++.+|++.|.+.+++.+||+ +++ |+++|+++..++++... ... ...++.++|.+ +.++.+++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~-~~~--~~~~~~~~~~~---~~~v~~~~ 73 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA-EGE--EDLDLRDLLRP---PLFVPEST 73 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH-cCC--CcCCHHHHhcC---CeecCCCC
Confidence 47889999999999999999899999999 777 89999999999976543 221 11457777754 78999999
Q ss_pred CHHHHHHHHHhCCC
Q 031190 149 KVLRAMQLMTGHML 162 (164)
Q Consensus 149 ~l~e~~~~m~~~~~ 162 (164)
++.++++.|.+++.
T Consensus 74 ~l~~~~~~~~~~~~ 87 (111)
T cd04590 74 PLDDLLEEMRKERS 87 (111)
T ss_pred cHHHHHHHHHhcCC
Confidence 99999999998765
No 66
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.10 E-value=5e-10 Score=91.59 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=84.4
Q ss_pred CcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (164)
Q Consensus 50 ~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~ 129 (164)
.|.+.+|+++|+++++ +.+++.+.++.++.+.+.++++|++||++ ++.+.++|+|+.+|++......+. ..
T Consensus 202 ~l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~~~~~---~~ 272 (429)
T COG1253 202 DLDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDGQS---DL 272 (429)
T ss_pred ccCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHhcCcc---cc
Confidence 3588999999999875 99999999999999999999999999995 477899999999999986653211 12
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
.....+.+ +++|++++++.++++.|++++.|
T Consensus 273 ~~~~~~~~---~~~Vpet~~~~~lL~~~r~~~~h 303 (429)
T COG1253 273 DLRVLVRP---PLFVPETLSLSDLLEEFREERTH 303 (429)
T ss_pred chhhcccC---CeEecCCCcHHHHHHHHHHhCCe
Confidence 22334445 89999999999999999987653
No 67
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=1.4e-09 Score=73.48 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=70.0
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHHHHHHcCCCCc--------ccccccccccCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSK--------STKVGDIMTEENK 140 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~~~~~~~~~~~--------~~~v~~vm~~~~~ 140 (164)
++.++.+++++.+|++.|...+++++||+ |++ |+++|+|+..|+++.+........ ...+.++|.. +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 77 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--D 77 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--C
Confidence 58889999999999999999899999999 676 899999999999765432211000 0112346766 5
Q ss_pred eEEEcCCCCHHHHHHHHHhCCC
Q 031190 141 LITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+.++++++++.+|++.|.+++.
T Consensus 78 ~~~v~~~~~l~~a~~~m~~~~~ 99 (123)
T cd04627 78 VISINGDQPLIDALHLMHNEGI 99 (123)
T ss_pred ceEeCCCCCHHHHHHHHHHcCC
Confidence 8899999999999999998875
No 68
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=1.2e-09 Score=73.44 Aligned_cols=89 Identities=31% Similarity=0.424 Sum_probs=73.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC---CC-----CcccccccccccCCCe
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---RS-----SKSTKVGDIMTEENKL 141 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~---~~-----~~~~~v~~vm~~~~~~ 141 (164)
++.++.+++++.++++.|.+.+++++||+ |++|+++|+++..|+++...... .. ....++.++|.+ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PV 77 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CC
Confidence 48899999999999999999999999999 77899999999999976421110 00 134568889987 58
Q ss_pred EEEcCCCCHHHHHHHHHhCCC
Q 031190 142 ITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 142 ~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.++++++++.+++..|.+++.
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~ 98 (122)
T cd04635 78 YSVTPDDSIATAVELMLEHDI 98 (122)
T ss_pred eeECCCCCHHHHHHHHHHcCC
Confidence 999999999999999988775
No 69
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08 E-value=2.1e-09 Score=70.28 Aligned_cols=81 Identities=33% Similarity=0.470 Sum_probs=70.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.++++.|.+++++.+||+ | +++++|+++..+++.. ....++.++|.+ .+.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~ 69 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRRA-------HPNRLVADAMTR--EVVTISPEAS 69 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhcc-------cccCCHHHHccC--CCEEECCCCC
Confidence 47889999999999999998899999999 6 5899999999999652 124568899988 5899999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 70 l~~~~~~~~~~~~ 82 (105)
T cd04599 70 LLEAKRLMEEKKI 82 (105)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988875
No 70
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=2.2e-09 Score=72.05 Aligned_cols=88 Identities=30% Similarity=0.407 Sum_probs=72.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------CCcccccccccccCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR---------SSKSTKVGDIMTEENK 140 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~---------~~~~~~v~~vm~~~~~ 140 (164)
++.++.+++++.++++.|.+++++.+||+ |+ |+++|+++..+++........ .....++.++|.. +
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 76 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--P 76 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--C
Confidence 47899999999999999999999999999 55 999999999999764432110 1124578889987 5
Q ss_pred eEEEcCCCCHHHHHHHHHhCCC
Q 031190 141 LITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+.++++++++.+++..|.+.+.
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~~~ 98 (121)
T cd04633 77 VITIEPDTSVSDVASLMLENNI 98 (121)
T ss_pred ceEECCCCcHHHHHHHHHHcCC
Confidence 8999999999999999988765
No 71
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.07 E-value=2.9e-09 Score=70.22 Aligned_cols=86 Identities=28% Similarity=0.343 Sum_probs=71.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++..+.+++++.++++.|.+.+++.+||+ |+ ++++|+++..|+++... ... ....++.++|.+ ++.++.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~-~~~~~~~~~~~~--~~~~v~~~~~ 74 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGR-EATVLVGDVMTR--DPVTASPDET 74 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCc-ccccCHHHhccC--CCeEECCCCC
Confidence 58899999999999999999889999999 66 99999999999965332 211 112367888988 5999999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 75 ~~~~~~~~~~~~~ 87 (111)
T cd04612 75 LRDALKRMAERDI 87 (111)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988764
No 72
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.07 E-value=6e-10 Score=90.90 Aligned_cols=133 Identities=18% Similarity=0.261 Sum_probs=107.7
Q ss_pred CCCChHHHHHHhCccccccccccccccccccchhhh-hcCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHc
Q 031190 12 GNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARME-EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH 90 (164)
Q Consensus 12 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~ 90 (164)
.+...++.++.+.-.+...+..+.+.++........ ..++.+.+++.+|+. .++++.++.|+.+++..++..
T Consensus 89 e~m~~Dd~~~ll~elp~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~-------e~v~l~~~~Tv~~al~~ir~~ 161 (451)
T COG2239 89 EELDIDDAADLLDELPDEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTT-------EFVTLPEDVTVDEALDRIRER 161 (451)
T ss_pred HhcCcHHHHHHHHhCCHHHHHHHHHhCCHHHHHHHHHhcCCChhhhhcccee-------eeEEeccCcCHHHHHHHHHHh
Confidence 455666666666666666666666666654444444 336788999999999 599999999999999999853
Q ss_pred -----CCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 91 -----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 91 -----~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
...+++|+ |.+++++|+|+.++++. ...+.+++++|.++ +.+|.+++..+++.+++.++++
T Consensus 162 ~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~-------a~~~~~i~~im~~~--~~~V~~~~dqeevA~~~~~ydl 227 (451)
T COG2239 162 AEDAETIYYLYVV--DEKGKLLGVVSLRDLLT-------AEPDELLKDLMEDD--VVSVLADDDQEEVARLFEKYDL 227 (451)
T ss_pred cccccccceEEEE--CCccceEEEeeHHHHhc-------CCcHhHHHHHhccc--ceeecccCCHHHHHHHHHHhCC
Confidence 46889999 88999999999999975 34678999999994 8999999999999999999986
No 73
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=1.7e-09 Score=73.49 Aligned_cols=89 Identities=24% Similarity=0.279 Sum_probs=69.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH-----HHHcCCCCcccccccccccCCCeEE-
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK-----IIVQGRSSKSTKVGDIMTEENKLIT- 143 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~-----~~~~~~~~~~~~v~~vm~~~~~~~~- 143 (164)
++.++.+++++.++++.|.+.+...+||+ |++|+++|+|+..|+++. +...+....+.++.++|++. +..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~~ 77 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPK--EDLK 77 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCch--hhhc
Confidence 47889999999999999998899999999 778999999999999642 22111122356799999873 333
Q ss_pred -E----cCCCCHHHHHHHHHhCCC
Q 031190 144 -V----SPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 144 -v----~~~~~l~e~~~~m~~~~~ 162 (164)
+ .+++++.++++.|.+++.
T Consensus 78 ~~~~~~~~~~~l~~~l~~m~~~~~ 101 (126)
T cd04640 78 ALDLEELENASVGDVVETLKASGR 101 (126)
T ss_pred cccHHHhccCcHHHHHHHHHHCCC
Confidence 3 268999999999998875
No 74
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.05 E-value=3.6e-09 Score=70.79 Aligned_cols=88 Identities=33% Similarity=0.423 Sum_probs=72.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCC---------CcccccccccccCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---------SKSTKVGDIMTEENK 140 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~---------~~~~~v~~vm~~~~~ 140 (164)
++.++.+++++.++++.|.+.+++.+||+ |+ |+++|+++..++++........ ....++.++|.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 76 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR--D 76 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC--C
Confidence 47889999999999999999999999999 66 8999999999997654321100 013568889988 5
Q ss_pred eEEEcCCCCHHHHHHHHHhCCC
Q 031190 141 LITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+.++++++++.+++..|.+++.
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~~~ 98 (122)
T cd04585 77 PITVSPDASVEEAAELMLERKI 98 (122)
T ss_pred CeEeCCCCcHHHHHHHHHHcCC
Confidence 8999999999999999987764
No 75
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=3.8e-09 Score=69.26 Aligned_cols=81 Identities=26% Similarity=0.442 Sum_probs=69.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++..+.++.++++.|...+.+.+||+ |+ ++++|+++..|++.. ....++.++|.. .+.++.++++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~ 70 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK-------DPDETVEEIMSK--DLVVAVPEMD 70 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc-------CccccHHHhCCC--CCeEECCCCC
Confidence 58899999999999999988888899999 65 899999999999641 134578999988 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.++++.|.+++.
T Consensus 71 l~~~~~~~~~~~~ 83 (107)
T cd04610 71 IMDAARVMFRTGI 83 (107)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987764
No 76
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.03 E-value=3.3e-09 Score=69.61 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=67.9
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l 150 (164)
-.++.+++++.++++.|.+.+++.+||+ |+ ++++|+|+.+|+++. ...++.++|.+ .+.++++++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~--------~~~~~~~~~~~--~~~~v~~~~~l 69 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIENA--------TYGDVVDYIVR--GIPYVRLTSTA 69 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhhh--------cccchhhhhhc--CCcEEcCCCCH
Confidence 3578999999999999999999999999 66 999999999999642 12357788887 58899999999
Q ss_pred HHHHHHHHhCCC
Q 031190 151 LRAMQLMTGHML 162 (164)
Q Consensus 151 ~e~~~~m~~~~~ 162 (164)
.+++..|.+++.
T Consensus 70 ~~a~~~~~~~~~ 81 (104)
T cd04594 70 EEAWEVMMKNKT 81 (104)
T ss_pred HHHHHHHHHcCc
Confidence 999999988765
No 77
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=5.4e-09 Score=68.65 Aligned_cols=83 Identities=29% Similarity=0.396 Sum_probs=70.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.++.++.++++.|.+.+++.+||+ +++++++|+++.++++.. ....++.++|.. ++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~~-------~~~~~~~~~~~~--~~~~v~~~~~ 70 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLRN-------PEEEQLALLMTR--DPPTVSPDDD 70 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHhc-------cccchHHHHhcC--CCceECCCCC
Confidence 47889999999999999999899999999 677999999999999641 123467888887 5889999999
Q ss_pred HHHHHHHHHhCCCC
Q 031190 150 VLRAMQLMTGHMLL 163 (164)
Q Consensus 150 l~e~~~~m~~~~~~ 163 (164)
+.+++..|.+++..
T Consensus 71 l~~~~~~~~~~~~~ 84 (106)
T cd04638 71 VKEAAKLMVENNIR 84 (106)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999887753
No 78
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.00 E-value=5.6e-09 Score=69.96 Aligned_cols=89 Identities=30% Similarity=0.343 Sum_probs=73.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcC-C-------CCcccccccccccCCCe
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG-R-------SSKSTKVGDIMTEENKL 141 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~-~-------~~~~~~v~~vm~~~~~~ 141 (164)
++.++++++++.+|++.|.+.+++++||+ |++++++|+|+..++++...... . .....++.++|.. ++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 77 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DV 77 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CC
Confidence 47899999999999999999999999999 77899999999999865432110 0 1234678899988 58
Q ss_pred EEEcCCCCHHHHHHHHHhCCC
Q 031190 142 ITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 142 ~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.+++.++++.++++.|.+++.
T Consensus 78 ~~i~~~~~l~~~~~~~~~~~~ 98 (121)
T cd04584 78 ITVHPLDTVEEAALLMREHRI 98 (121)
T ss_pred eEECCCCcHHHHHHHHHHcCC
Confidence 999999999999999988765
No 79
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.00 E-value=6.4e-10 Score=88.15 Aligned_cols=124 Identities=23% Similarity=0.349 Sum_probs=96.7
Q ss_pred ccccccccccccchhhhhc-------Cc--ccccHHH---HhhhcCCCCCC---CceEecCCCcHHHHHHHHHHcCCCeE
Q 031190 31 RPVVSSRFESVSSARMEEH-------GF--ESTTISD---ILKAKGKGADG---SWLWCTTDDTVYDAVKSMTQHNVGAL 95 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~-------~~--~~~~v~d---im~~~~~~~~~---~~~~v~~~~tl~~a~~~~~~~~~~~i 95 (164)
.|+++++||++++..|+.. ++ .+++..+ ...+.+.|++| ++++++|+.++.++++....++++.+
T Consensus 63 tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 63 TPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGI 142 (503)
T ss_pred CceeccCCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccccCCcccCCcccchhhhhhccccccccc
Confidence 4899999999999999822 22 5555321 22223445554 78999999999999999999999999
Q ss_pred EEEecC-CCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 96 VVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 96 pVv~~d-~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
||.+.+ -..+++|+||.+|+ +++ .....+++++|+++ .++.+.+.+|.++-+++.+++.
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi-~f~-----~~~~~~~~~vmt~~--~~~~~~gi~l~~~neiL~~~kk 202 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDI-QFL-----EDNSLLVSDVMTKN--PVTGAQGITLKEANEILKKIKK 202 (503)
T ss_pred ccccCCcccceeEEEEehhhh-hhh-----hcccchhhhhcccc--cccccccccHHHHHHHHHhhhc
Confidence 999411 14789999999998 765 23568899999995 6899999999999999977653
No 80
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.00 E-value=8.7e-09 Score=68.56 Aligned_cols=87 Identities=29% Similarity=0.467 Sum_probs=69.4
Q ss_pred CceEecCCCcHHHHHHHHHHcC-CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCC-
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPD- 147 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~-~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~- 147 (164)
++.+++++.++.++++.|..++ ...+||+ + +|+++|+|+..|+++... .+......++.++|.. +++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~--~~~~v~~~~ 75 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQ--PVVTLQESE 75 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCC--CcEEEeccc
Confidence 4788999999999999998888 6677777 5 589999999999976432 2222234678899988 48888887
Q ss_pred -CCHHHHHHHHHhCCC
Q 031190 148 -TKVLRAMQLMTGHML 162 (164)
Q Consensus 148 -~~l~e~~~~m~~~~~ 162 (164)
+++.++++.|.+++.
T Consensus 76 ~~~l~~a~~~~~~~~~ 91 (115)
T cd04620 76 IQDIFTALSLFRQHQI 91 (115)
T ss_pred ccCHHHHHHHHHHhCC
Confidence 789999999998775
No 81
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.99 E-value=6.6e-09 Score=72.33 Aligned_cols=88 Identities=32% Similarity=0.552 Sum_probs=72.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC--C----------------------
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--S---------------------- 125 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~--~---------------------- 125 (164)
++.++.+++++.++++.|.+.+++.+||+ |+ ++++|+++..|+++.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 48899999999999999999999999999 66 899999999999765532210 0
Q ss_pred -------CcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 126 -------SKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 126 -------~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
....++.++|.. ++.++++++++.+++..|.+++.
T Consensus 79 ~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~ 120 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKI 120 (143)
T ss_pred HHHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCC
Confidence 024567888887 59999999999999999988765
No 82
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.99 E-value=5.1e-09 Score=68.11 Aligned_cols=71 Identities=31% Similarity=0.354 Sum_probs=62.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.+++++.+|++.|.+++++.+||+ |++|+++|+|+.+|++.. . . +.+++++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~--------~---------~---~~~v~~~~~ 59 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK--------S---------E---VVTATKRTT 59 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC--------C---------C---cEEecCCCC
Confidence 58899999999999999999999999999 788999999999999541 0 1 668999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.+++++|.+++.
T Consensus 60 l~~a~~~m~~~~~ 72 (96)
T cd04614 60 VSECAQKMKRNRI 72 (96)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998875
No 83
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.98 E-value=4.4e-09 Score=69.47 Aligned_cols=78 Identities=28% Similarity=0.355 Sum_probs=65.9
Q ss_pred ecCCCcHHHHHHHHHHcC-----CCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCC
Q 031190 74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDT 148 (164)
Q Consensus 74 v~~~~tl~~a~~~~~~~~-----~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~ 148 (164)
+.+++++.++++.|.+++ +..+||+ |++++++|+|+.+++++. ....++.++|.+ ++.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~-------~~~~~v~~~~~~--~~~~i~~~~ 70 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA-------DPDTPVSDIMDT--DVISVSADD 70 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC-------CCcchHHHHhCC--CCeEEcCCC
Confidence 578999999999998776 4789999 778999999999998641 134678999988 589999999
Q ss_pred CHHHHHHHHHhCCC
Q 031190 149 KVLRAMQLMTGHML 162 (164)
Q Consensus 149 ~l~e~~~~m~~~~~ 162 (164)
++.++++.|.+++.
T Consensus 71 ~~~~~~~~~~~~~~ 84 (109)
T cd04606 71 DQEEVARLFEKYDL 84 (109)
T ss_pred CHHHHHHHHHHcCC
Confidence 99999999987765
No 84
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.98 E-value=7.8e-09 Score=69.52 Aligned_cols=88 Identities=30% Similarity=0.419 Sum_probs=71.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC--C-------CcccccccccccCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--S-------SKSTKVGDIMTEENK 140 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~--~-------~~~~~v~~vm~~~~~ 140 (164)
++.++.+++++.++++.|.+.+++++||+ |+ |+++|+++..++++.+..... . ....++.++|.. +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 76 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR--D 76 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC--C
Confidence 47889999999999999999999999999 65 899999999999764431100 0 013468899988 5
Q ss_pred eEEEcCCCCHHHHHHHHHhCCC
Q 031190 141 LITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
++++++++++.++++.|.+++.
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~~~ 98 (122)
T cd04637 77 PITVSPDTPVDEASKLLLENSI 98 (122)
T ss_pred CeeeCCCCcHHHHHHHHHHcCC
Confidence 9999999999999999988765
No 85
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=4.6e-09 Score=70.24 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=71.0
Q ss_pred CceEecCCCcHHHHHHHHHHcC-CCeEEEEecCCCCcEEEEEehHHHHHHHHHc--CCCCcccccccccccCCCeEEEcC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQ--GRSSKSTKVGDIMTEENKLITVSP 146 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~-~~~ipVv~~d~~~~~vGivt~~dil~~~~~~--~~~~~~~~v~~vm~~~~~~~~v~~ 146 (164)
++.++++++++.++++.|...+ ++.+||+ |+ |+++|+|+..|+++.+... .......++.++|.+ ++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 76 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEA 76 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecC
Confidence 4788999999999999998877 8999999 67 9999999999997543210 000134578999988 5899999
Q ss_pred CCCHHHHHHHHHhCC
Q 031190 147 DTKVLRAMQLMTGHM 161 (164)
Q Consensus 147 ~~~l~e~~~~m~~~~ 161 (164)
++++.+++..|.+++
T Consensus 77 ~~~~~~~~~~~~~~~ 91 (119)
T cd04598 77 DTPLEEVSRLATGRD 91 (119)
T ss_pred CCCHHHHHHHHHcCC
Confidence 999999999998775
No 86
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.97 E-value=6.5e-09 Score=68.42 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=69.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC-CC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP-DT 148 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~-~~ 148 (164)
++..+.+++++.++++.|.+++++.+||+ |++|+++|+++.++++.. .....++.++|.. .+.++.. ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~------~~~~~~v~~~~~~--~~~~~~~~~~ 72 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFE------TDLDKPVSEVMTP--ENLLTTVEGT 72 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeec------ccCCCCHHHhccc--CceEEecCCC
Confidence 48899999999999999999999999999 777999999999998531 1134678999977 3666666 99
Q ss_pred CHHHHHHHHHhCCC
Q 031190 149 KVLRAMQLMTGHML 162 (164)
Q Consensus 149 ~l~e~~~~m~~~~~ 162 (164)
++.++++.|.+++.
T Consensus 73 ~l~~~~~~~~~~~~ 86 (110)
T cd04601 73 SLEEALELLHEHKI 86 (110)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999988875
No 87
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.96 E-value=1.6e-08 Score=66.01 Aligned_cols=88 Identities=39% Similarity=0.582 Sum_probs=71.8
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.++.++.++.+.|...+.+.+||+ +++++++|+++.+|++....... ......+.++|.. ++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 76 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALAEGG-LDPLVTVGDVMTR--DVVTVSPDTS 76 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHHhcc-CCccccHHHHhcC--CceecCCCcC
Confidence 47889999999999999999889999999 77799999999999977554221 1112226778887 5889999999
Q ss_pred HHHHHHHHHhCCC
Q 031190 150 VLRAMQLMTGHML 162 (164)
Q Consensus 150 l~e~~~~m~~~~~ 162 (164)
+.+++..|.+.+.
T Consensus 77 ~~~~~~~~~~~~~ 89 (113)
T cd02205 77 LEEAAELMLEHGI 89 (113)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988754
No 88
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.94 E-value=1e-09 Score=86.22 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=86.3
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~ 130 (164)
+.+++|+|+|.++++ +..++.+++.+++++.+.+..+.++||++ |+-+.++|+++.+|+++.+..++ ......
T Consensus 197 Le~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~~-~~~k~d 269 (423)
T COG4536 197 LENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEKN-EFTKED 269 (423)
T ss_pred cccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhccC-cccHhH
Confidence 578999999999885 99999999999999999999999999997 55567999999999988765443 234445
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+..+..+ +++|++++++.+.+..|.+++-
T Consensus 270 ~~~~a~e---pyFVPe~Tpl~~QL~~F~~~k~ 298 (423)
T COG4536 270 ILRAADE---PYFVPEGTPLSDQLVAFQRNKK 298 (423)
T ss_pred HHHHhcC---CeecCCCCcHHHHHHHHHHhcc
Confidence 5555566 9999999999999999987764
No 89
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.94 E-value=1.3e-08 Score=67.78 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=68.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP 146 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~ 146 (164)
++.++.+++++.++++.|.+++++.+||+ |+ +|+++|+|+.+|++. .. . ...++.++|... ...+..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~-~~--~---~~~~v~~~~~~~--~~~~~~ 72 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDF-LT--D---SETPLSEVMTPR--EVLVVA 72 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhh-hh--c---cCCCHHHhcCCC--ceEEEC
Confidence 47889999999999999998899999999 65 689999999999853 21 1 235689999884 666755
Q ss_pred --CCCHHHHHHHHHhCCC
Q 031190 147 --DTKVLRAMQLMTGHML 162 (164)
Q Consensus 147 --~~~l~e~~~~m~~~~~ 162 (164)
++++.++++.|.+++.
T Consensus 73 ~~~~~l~~~l~~~~~~~~ 90 (114)
T cd04602 73 PTGITLEEANEILRESKK 90 (114)
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 9999999999988865
No 90
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.88 E-value=2.8e-08 Score=65.55 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=66.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCC---CCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSP 146 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~---~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~ 146 (164)
....+.+++++.++.+.+.+.++..+||+ |+ +|+++|+|+.+|+..... . +|.+ ++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~~-~-----------~m~~--~~~~v~~ 66 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVALK-N-----------YIDP--SPFTVSP 66 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHHH-H-----------hccC--CCceECC
Confidence 36788999999999999999889999999 66 689999999999965331 1 7877 5889999
Q ss_pred CCCHHHHHHHHHhCCC
Q 031190 147 DTKVLRAMQLMTGHML 162 (164)
Q Consensus 147 ~~~l~e~~~~m~~~~~ 162 (164)
++++.++++.|.+++.
T Consensus 67 ~~~l~~~~~~~~~~~~ 82 (105)
T cd04591 67 RTSLEKVHQLFRKLGL 82 (105)
T ss_pred CCcHHHHHHHHHHcCC
Confidence 9999999999988775
No 91
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.85 E-value=5.2e-08 Score=64.73 Aligned_cols=86 Identities=36% Similarity=0.555 Sum_probs=72.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTK 149 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~ 149 (164)
++.++.++.++.+|...|.++++..+||+ + .++++|++|.+|+++....... ...++.++|+. ++.++.++.+
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~--~-~~~l~Giit~~di~~~~~~~~~--~~~~v~~v~~~--~~~~~~~~~~ 80 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVV--D-DGKLVGIITERDILRALAAGGK--RLLPVKEVMTK--PVVTVDPDTP 80 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEe--e-CCEEEEEEEHHHHHHHHhccCC--ccccHHHhccC--CcEEECCCCC
Confidence 59999999999999999999999999999 3 3489999999999877653321 12268999997 5899999999
Q ss_pred HHHHHHHHHh-CCC
Q 031190 150 VLRAMQLMTG-HML 162 (164)
Q Consensus 150 l~e~~~~m~~-~~~ 162 (164)
+.++++.|.. +++
T Consensus 81 ~~~~~~~m~~~~~~ 94 (117)
T COG0517 81 LEEALELMVERHKI 94 (117)
T ss_pred HHHHHHHHHHHcCc
Confidence 9999999988 454
No 92
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.75 E-value=3.6e-08 Score=74.12 Aligned_cols=60 Identities=32% Similarity=0.545 Sum_probs=56.3
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
.+.+|+++|.+ ++++++.+..+.||+++|..+++.++.|+ |.+|+++|+||+.|+|..+.
T Consensus 232 ~~~kV~~~M~k-------~vitI~eDe~i~dAir~M~~~nVGRLlV~--ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 232 LDAKVSDYMRK-------NVITINEDEDIYDAIRLMNKNNVGRLLVT--DSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ccccHHHHhcc-------CCceEcCchhHHHHHHHHHhcCcceEEEE--ccCCcEEEEEehHHHHHHhh
Confidence 56899999998 69999999999999999999999999999 88999999999999998764
No 93
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.72 E-value=3.8e-08 Score=65.31 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=50.5
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++.++.+++++.+|++.|.+++.+.+||+ |++|+++|+||.+|+++
T Consensus 55 ~~~v~~~~~~-------~~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV-------PVPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec-------CCcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence 3568899976 58999999999999999999999999999 77799999999999964
No 94
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.70 E-value=6e-08 Score=79.85 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=76.0
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v 131 (164)
.+.+++++|.+ ++.++.+++++.+|++.|.+++...+||+ |++|+++|+||.+|+++.+.. ...
T Consensus 193 ~~~~v~~im~~-------~~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~-------~~~ 256 (449)
T TIGR00400 193 PEEILSSIMRS-------SVFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQS-------EAT 256 (449)
T ss_pred CCCcHHHHhCC-------CCeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHh-------hhH
Confidence 34579999987 58999999999999999999999999999 888999999999999876642 223
Q ss_pred ccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 132 GDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 132 ~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+++|+.. ..+..+++.+.+++..|.++++
T Consensus 257 ed~~~~~--gv~~~~~~~l~~~~~~~~~~R~ 285 (449)
T TIGR00400 257 EDFYMIA--AVKPLDDSYFDTSILVMAKNRI 285 (449)
T ss_pred HHHHHhc--CCCCCcchhhhchHHHHHHhcc
Confidence 6788773 4444457788888888888776
No 95
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.68 E-value=4.5e-08 Score=72.81 Aligned_cols=101 Identities=12% Similarity=0.256 Sum_probs=85.2
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK 130 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~ 130 (164)
+.+..|+|+|.++.+ ..++..+.++.+.+..+.+..+|++||+. ++.+.+.|++..+|++.++... .....
T Consensus 64 iadl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~iiesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~~~---~~~F~ 134 (293)
T COG4535 64 IADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVIS-EDKDHVEGILLAKDLLPFMRSD---AEPFD 134 (293)
T ss_pred HHHhhHhhhcccHHH-----heeccccCCHHHHHHHHHHhccccCCccc-CCchhhhhhhhHHHHHHHhcCC---ccccc
Confidence 467899999999875 89999999999999999999999999994 4567899999999999875321 12356
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
+.++.++ .++|+++-.+...++-|..++.|
T Consensus 135 i~~lLRP---av~VPESKrvd~lLkeFR~~RnH 164 (293)
T COG4535 135 IKELLRP---AVVVPESKRVDRLLKEFRSQRNH 164 (293)
T ss_pred HHHhccc---ceecccchhHHHHHHHHHhhcCc
Confidence 7888888 89999999999999988776654
No 96
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.67 E-value=2.9e-07 Score=77.50 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=53.4
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
.+++++|.. ++.++++++++.+|++.|.+++++.+||+ |++|+++|+|+.+|+.+.+.
T Consensus 68 ~~V~dim~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~ 125 (546)
T PRK14869 68 PQVRDLEID-------KPVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYM 125 (546)
T ss_pred CcHHHhcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHH
Confidence 689999987 59999999999999999999999999999 77899999999999987554
No 97
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.66 E-value=1.2e-07 Score=63.20 Aligned_cols=57 Identities=21% Similarity=0.401 Sum_probs=51.5
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++.++.+++++.+|++.|.+++...+||+ |++|+++|+|+.+|+++
T Consensus 57 ~~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR-------AVVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhcc
Confidence 34679999987 59999999999999999999999999999 77789999999999853
No 98
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.61 E-value=1.4e-07 Score=63.20 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=50.0
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil 116 (164)
.+++++|.. ++.++.+++++.++++.|.+.++..+||+ |++|+++|+|+.+|+.
T Consensus 58 ~~v~dim~~-------~~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR-------KPVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC-------CCCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhh
Confidence 679999987 58999999999999999999999999999 7889999999999984
No 99
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=5.7e-07 Score=59.54 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=50.5
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...+.++|.. .+.++.+++++.++++.|.+++.+.+||+ +++|+++|+||.+|++.
T Consensus 57 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR-------NPITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC-------CCEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhcc
Confidence 3578999976 58999999999999999999999999999 77899999999999853
No 100
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=4.4e-07 Score=60.95 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=50.9
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++.++.+++++.++++.|..++.+.+||+ |++|+++|+|+..|++.
T Consensus 68 ~~~i~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSP-------PVVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccC-------CCeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence 4578999977 59999999999999999999999999999 77899999999999864
No 101
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.50 E-value=4.8e-07 Score=59.80 Aligned_cols=58 Identities=24% Similarity=0.462 Sum_probs=51.8
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+...++.++|.. ++.++.+++++.++++.|.+++...+||+ +++|+++|+|+..|+++
T Consensus 55 ~~~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNS-------PVITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccC-------CceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence 355789999976 59999999999999999999999999999 77889999999999864
No 102
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.50 E-value=1.2e-06 Score=73.77 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=81.4
Q ss_pred cccccccccccchhhhhcCcccccHHHHhh-hcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEE
Q 031190 32 PVVSSRFESVSSARMEEHGFESTTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110 (164)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~v~dim~-~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGiv 110 (164)
|.+...+++....+... ...+|+++|. . ++.++++++++.++.+.|.++++..+||+ |++|+++|+|
T Consensus 227 ~ii~t~~dt~~t~~~l~---~~~~V~~iM~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lvGii 294 (546)
T PRK14869 227 TVISTPYDTFTTARLIN---QSIPVSYIMTTE-------DLVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVVGVI 294 (546)
T ss_pred eEEEecccHHHHHHHhh---cCCCHHHhccCC-------CcEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEEEEE
Confidence 44555555444333332 3578999998 5 59999999999999999999999999999 8889999999
Q ss_pred ehHHHHHHHHHc------C---C---CC---------cccccccccccCCCeEEE---cCCCCHHHHHHHHHhCCCC
Q 031190 111 TERDYLRKIIVQ------G---R---SS---------KSTKVGDIMTEENKLITV---SPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 111 t~~dil~~~~~~------~---~---~~---------~~~~v~~vm~~~~~~~~v---~~~~~l~e~~~~m~~~~~~ 163 (164)
|.+|+++....+ . . .. +.-++.++|+.. ++.+ +...+...+.++|.+.++.
T Consensus 295 t~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~--pi~~~~~~~gst~tiv~~~~~~~~i~ 369 (546)
T PRK14869 295 SRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSN--PIFFRNEPVGSTSTIVARMYRENGIE 369 (546)
T ss_pred EHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCC--CcEEEeeeeeeHHHHHHHHHHHcCCC
Confidence 999997633210 0 0 00 011345666663 4433 3466666778888777653
No 103
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.49 E-value=3.2e-07 Score=59.84 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=46.6
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~ 117 (164)
.+..|+.... .+.++.+++++.+|++.|.+++..++||+ |++ |+++|+||.+|++.
T Consensus 41 vt~~Dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~ 97 (98)
T cd04618 41 LTITDFILIL------RLVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK 97 (98)
T ss_pred EEHHHHhhhe------eeEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence 4556665441 16889999999999999999999999999 565 89999999999853
No 104
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.48 E-value=1.5e-06 Score=67.81 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=71.0
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccc-c
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV-G 132 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v-~ 132 (164)
..+.++|.+ +.++++++++.++++.|.+++.+.+||+ |+.|.++|+||..|+++.+.+.-....+..- .
T Consensus 133 ~~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv--De~G~viGiVTleDIle~ivGei~de~d~~~~~ 202 (292)
T PRK15094 133 FSMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIVGEIEDEYDEEDDI 202 (292)
T ss_pred CCHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEE--eCCCCEEEEeEHHHHHHHHhCCCcccccccccc
Confidence 347777765 6799999999999999999999999999 7888999999999999988754111111111 1
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHH
Q 031190 133 DIMTEENKLITVSPDTKVLRAMQLM 157 (164)
Q Consensus 133 ~vm~~~~~~~~v~~~~~l~e~~~~m 157 (164)
++-...+.-+.|+..+++.++.+.+
T Consensus 203 ~i~~~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 203 DFRQLSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred ccEEeCCCeEEEEeccCHHHHHHHh
Confidence 1222122478899999999998876
No 105
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.47 E-value=6.9e-07 Score=59.27 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=49.5
Q ss_pred cccHHHHhhhcCCCCCCCceEecCC--CcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~--~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+.++.++|.. ++.++.++ +++.++++.|.+++...+||+ |++|+++|+||.+|+++
T Consensus 57 ~~~i~~~~~~-------~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ-------PVVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC-------CcEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence 4678899976 58888887 789999999999999999999 77899999999999864
No 106
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.47 E-value=8.3e-07 Score=58.57 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=50.6
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.+ ++.++.+++++.++++.|..++...+||+ +++++++|+|+..|+++
T Consensus 58 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~ 113 (114)
T cd04604 58 TLPVADVMTR-------NPKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR 113 (114)
T ss_pred cCCHHHhhcc-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence 3579999987 58999999999999999999999999999 77899999999999864
No 107
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=8.6e-07 Score=58.26 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=50.8
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...+.++|.. ++.++.+++++.++++.|..++...+||+ +++|+++|+++..|+++
T Consensus 52 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK-------NPITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence 4579999976 59999999999999999999999999999 77899999999999853
No 108
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=8e-07 Score=58.06 Aligned_cols=56 Identities=27% Similarity=0.472 Sum_probs=50.2
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++++|.. ++.++.+++++.++++.|.+++...+||+ +++|+++|+|+..|+++
T Consensus 51 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK-------DLVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC-------CCeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence 3568899976 58999999999999999999999999999 77899999999999864
No 109
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.46 E-value=7.9e-07 Score=59.25 Aligned_cols=56 Identities=32% Similarity=0.479 Sum_probs=50.7
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+ +++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTR-------DPITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccC-------CCeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence 4678899977 59999999999999999999999999999 77789999999999964
No 110
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.45 E-value=6.3e-07 Score=59.97 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=50.3
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC---CcEEEEEehHHHH
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYL 116 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~---~~~vGivt~~dil 116 (164)
+...+++++|.... ++.++.+++++.+++++|.+++...+||+ |++ |+++|+||..|++
T Consensus 55 ~~~~~~~~~~~~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 55 LQKVPVGVIMTRMP-----NITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred ccCCCHHHHhCCCC-----CcEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhhee
Confidence 34678889997311 38899999999999999999999999999 555 6999999999985
No 111
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=9.4e-07 Score=58.65 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=50.1
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++.++++++++.++++.|.+.+...+||+ |+ |+++|+|+..|+++
T Consensus 58 ~~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK-------PLISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence 34679999976 59999999999999999999999999999 65 89999999999864
No 112
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=6.9e-07 Score=60.16 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=42.0
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di 115 (164)
++.++.+++++.+|++.|.+++.+.+||+ |++++++|+||.+|+
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di 120 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDV 120 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHh
Confidence 58999999999999999999999999999 778999999999998
No 113
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=1.1e-06 Score=58.02 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=49.7
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++.++.+++++.++++.|.+++...+||+ + +|+++|+||.+|+++
T Consensus 56 ~~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 56 LDTTVRAIMNP-------EPIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK 111 (112)
T ss_pred hcCCHHHHhCC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence 34679999976 58999999999999999999999999999 5 589999999999864
No 114
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.43 E-value=1.3e-06 Score=57.52 Aligned_cols=56 Identities=29% Similarity=0.406 Sum_probs=50.8
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+.++.++|.. ++.++.+++++.++++.|..++...+||+ |++++++|+|+..|+++
T Consensus 52 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 52 DTPVSDIMDT-------DVISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVID 107 (109)
T ss_pred cchHHHHhCC-------CCeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhh
Confidence 4578899876 58999999999999999999999999999 77899999999999975
No 115
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=1.6e-06 Score=58.08 Aligned_cols=57 Identities=30% Similarity=0.571 Sum_probs=50.9
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++.++.+++++.++++.|.+.+.+.+||+ +++|+++|++|..|+++
T Consensus 65 ~~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT-------DVLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC-------CCeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence 35678899976 59999999999999999999999999999 67789999999999863
No 116
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.41 E-value=1.3e-06 Score=56.95 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=48.5
Q ss_pred cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+++++|.+ .+..+.+++++.++++.|.+++.+.+||+ |++++++|+|+.+++++
T Consensus 52 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP-------FKVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc-------CCEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 57888876 47889999999999999999999999999 77889999999999864
No 117
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.40 E-value=3.4e-06 Score=68.75 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=67.3
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccccccc-CCCeEEEcCCCC
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE-ENKLITVSPDTK 149 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~-~~~~~~v~~~~~ 149 (164)
+.++++++++.++++.|++++.+..+|+ |+.|..+|+||..|+++.+.+.-....+ .-.+.+.+ ++..+.++..++
T Consensus 264 ~~~Vpe~~~l~~ll~~m~~~~~~~aiVv--DE~G~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~ 340 (408)
T TIGR03520 264 PYFVPENKKLDDLLRDFQEKKNHLAIVV--DEYGGTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTS 340 (408)
T ss_pred CeEeCCCCcHHHHHHHHHhcCceEEEEE--cCCCCEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccC
Confidence 8899999999999999999999999999 8889999999999999988654211111 11222322 125788999999
Q ss_pred HHHHHHHHHh
Q 031190 150 VLRAMQLMTG 159 (164)
Q Consensus 150 l~e~~~~m~~ 159 (164)
+.++.+.|.-
T Consensus 341 l~~l~~~l~~ 350 (408)
T TIGR03520 341 LKDFYKILKL 350 (408)
T ss_pred HHHHHHHhCC
Confidence 9999988843
No 118
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.40 E-value=1.4e-06 Score=58.26 Aligned_cols=57 Identities=33% Similarity=0.550 Sum_probs=50.9
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++.++.+++++.++++.|.+++.+.+||+ +++|+++|++|..|+++
T Consensus 65 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST-------PVYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence 35678889876 59999999999999999999999999999 77799999999999864
No 119
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.40 E-value=1.4e-06 Score=58.54 Aligned_cols=56 Identities=34% Similarity=0.557 Sum_probs=50.2
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++.++.+++++.++++.|.+.+...+||+ +++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR-------NVITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC-------CceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence 3578899876 59999999999999999999999999999 66789999999999864
No 120
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.40 E-value=1.6e-06 Score=56.97 Aligned_cols=57 Identities=26% Similarity=0.533 Sum_probs=50.9
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
....++++|.. ++..+.+++++.++++.|.+.+...+||+ |++|+++|+|+.+|+++
T Consensus 54 ~~~~v~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS-------PLLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC-------CceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence 45678999876 58999999999999999999999999999 77799999999999853
No 121
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.39 E-value=1.5e-06 Score=56.91 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=49.7
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..+.++|.. .+.++.+++++.++++.|.+.+.+++||+ +++|+++|++|.+|+++
T Consensus 54 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE-------DVFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC-------CceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence 468888876 59999999999999999999999999999 77889999999999853
No 122
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.38 E-value=1.2e-06 Score=57.70 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=49.8
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
.++.++|.+ ++.++.+++++.++++.|.+++...+||+ +++++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP-------NPVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC-------CCeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhcc
Confidence 578999976 58999999999999999999999999999 77799999999999853
No 123
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=1.5e-06 Score=57.14 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=49.7
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil 116 (164)
...+.++|.. ++..+.+++++.++++.|.+++...+||+ +++|+++|++|..|+.
T Consensus 55 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~ 109 (111)
T cd04639 55 DAPVRGVMRR-------DFPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVG 109 (111)
T ss_pred CCcHHHHhcC-------CCcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhh
Confidence 3578899976 59999999999999999999999999999 7678999999999985
No 124
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.38 E-value=1.6e-06 Score=57.01 Aligned_cols=55 Identities=31% Similarity=0.430 Sum_probs=49.5
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++.++.+++++.++++.|.+.+.+.+||+ ++ |+++|+|+..|+++
T Consensus 58 ~~~~~~~~~~-------~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR-------NVITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC-------CcEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence 4689999976 59999999999999999999999999999 55 89999999999864
No 125
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.37 E-value=1.8e-06 Score=56.79 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=50.5
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++..+.+++++.++++.|.+++.+.+||+ + +|+++|+||..|+++
T Consensus 54 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST-------DVVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC-------CCEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence 55789999976 59999999999999999999999999999 6 789999999999853
No 126
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.37 E-value=1.7e-06 Score=59.67 Aligned_cols=55 Identities=31% Similarity=0.471 Sum_probs=49.5
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.+ ++..+.+++++.++++.|.+++.+.+||+ ++ |+++|+|+..|+++
T Consensus 80 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTE-------EIITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence 4579999987 58999999999999999999999999999 55 89999999999864
No 127
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.37 E-value=1.6e-06 Score=57.56 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=49.6
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC--CcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~--~~~vGivt~~dil~ 117 (164)
...+.++|.. ++.++.+++++.+++++|.+++...+||+ |++ |+++|+||..|+++
T Consensus 57 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 57 PSAVDEVATP-------PLLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred cccHHHhccC-------CceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence 3458888876 59999999999999999999999999999 665 79999999999864
No 128
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=1.3e-06 Score=59.85 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=50.2
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.+ ++..+.+++++.++++.|.+.+.+.+||+ | +|+++|+||.+|+++
T Consensus 80 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR-------PVVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC-------CceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence 4679999977 59999999999999999999999999999 7 799999999999864
No 129
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.36 E-value=1.6e-06 Score=57.07 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=47.0
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil 116 (164)
..+.++|.+ +.++.+++++.++++.|..++.+.+||+ |++|+++|+||.+|++
T Consensus 57 ~~~~~~~~~--------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~ 109 (111)
T cd04590 57 LDLRDLLRP--------PLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDIL 109 (111)
T ss_pred CCHHHHhcC--------CeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhh
Confidence 456776643 8999999999999999999999999999 7779999999999985
No 130
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.36 E-value=1.1e-06 Score=58.23 Aligned_cols=58 Identities=24% Similarity=0.454 Sum_probs=49.6
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.+.. .+.++.+++++.+|++.|.+++.+.+||+ |++|+++|+|+.+|+++
T Consensus 56 ~~~v~~~~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAA-----KLVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccc-----cceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence 467889987521 26789999999999999999999999999 66789999999999853
No 131
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.34 E-value=2.8e-06 Score=46.80 Aligned_cols=45 Identities=29% Similarity=0.502 Sum_probs=41.2
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+.++.+++++.++++.|..++...+||+ +++++++|+++..++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHH
Confidence 6788999999999999999999999999 67789999999999865
No 132
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.34 E-value=2.2e-06 Score=56.13 Aligned_cols=56 Identities=21% Similarity=0.424 Sum_probs=48.7
Q ss_pred cccHHHHhhhcCCCCCCCceEecC-CCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~-~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. .+..+.+ ++++.++++.|.+.+...+||+ +++|+++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP-------ENLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc-------CceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence 4678899976 3666676 9999999999999999999999 77899999999999864
No 133
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.34 E-value=2e-06 Score=57.12 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=48.1
Q ss_pred ccHHHHhhhcCCCCCCCceEecC--CCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~--~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..+.++|.. ...++.. ++++.++++.|..++...+||+ +++|+++|+||.+|+++
T Consensus 57 ~~v~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP-------REVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC-------CceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence 468899976 4677765 9999999999999999999999 77889999999999853
No 134
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.34 E-value=2.3e-06 Score=56.39 Aligned_cols=55 Identities=33% Similarity=0.486 Sum_probs=49.5
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
.++.++|.. .+.++.+++++.++++.|...+.+.+||+ +++|+++|+|+..|+++
T Consensus 58 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR-------GVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC-------CccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 359999977 58999999999999999999999999999 77799999999999853
No 135
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.34 E-value=2.8e-06 Score=55.76 Aligned_cols=55 Identities=35% Similarity=0.640 Sum_probs=49.6
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..+.++|.. .+.++.+++++.++++.|.+.+...+||+ +++|+++|+|+..|+++
T Consensus 55 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK-------DVITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC-------CceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence 578888876 59999999999999999999999999999 77789999999999863
No 136
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=2e-06 Score=57.63 Aligned_cols=46 Identities=35% Similarity=0.467 Sum_probs=42.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
++.++.+++++.++++.|.+++.+.+||+ |++|+++|+||.+|+++
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~~~Givt~~di~~ 119 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVV--DENKRVEGIISLSDILQ 119 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEE--CCCCCEEEEEEHHHhhc
Confidence 47899999999999999999999999999 77789999999999864
No 137
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.33 E-value=2.4e-06 Score=56.21 Aligned_cols=55 Identities=29% Similarity=0.479 Sum_probs=49.6
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++..+.+++++.++++.|.+++.+.+||+ ++ |+++|+++..|+++
T Consensus 56 ~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA-------PPITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC-------CCeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence 4679999976 59999999999999999999999999999 55 89999999999853
No 138
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.33 E-value=2.3e-06 Score=55.67 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=48.8
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil 116 (164)
...+.++|.. ++.++.+++++.++++.|.+++...+||+ |+ |+++|+||..|++
T Consensus 50 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR-------EVVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC-------CCEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence 4568899977 59999999999999999999999999999 55 8999999999985
No 139
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.32 E-value=1.9e-06 Score=56.71 Aligned_cols=56 Identities=25% Similarity=0.362 Sum_probs=50.6
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCC-CCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~-~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++.++.+++++.++++.|...+.+.+||+ ++ .++++|+|+..|++.
T Consensus 57 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK-------PPVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC-------CCcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence 3789999987 59999999999999999999999999999 66 789999999999853
No 140
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.32 E-value=2.1e-06 Score=55.62 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=48.3
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
++..+++... .+.++.+++++.++++.|.+++...+||+ +++|+++|+||.+|+++
T Consensus 40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~ 95 (96)
T cd04614 40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK 95 (96)
T ss_pred EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence 4666766542 38899999999999999999999999999 77789999999999864
No 141
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.31 E-value=2.3e-06 Score=67.37 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=51.9
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++.++.+++++.+|++.|.+++...+||+ |++|+++|+||..|+++
T Consensus 261 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 261 LTTPVNEAMTR-------GGTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQ 317 (321)
T ss_pred cCCcHHHhcCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHh
Confidence 34578999987 58999999999999999999999999999 77789999999999975
No 142
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=2.4e-06 Score=56.28 Aligned_cols=55 Identities=22% Similarity=0.495 Sum_probs=49.2
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++..+.+++++.++++.|.+++...+||+ ++ |+++|+||..|++.
T Consensus 56 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ-------DVFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC-------CcEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhcc
Confidence 3578899876 58999999999999999999999999999 55 89999999999853
No 143
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=2.8e-06 Score=55.95 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=49.2
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.+ ++..+.+++++.++++.|.+++.+.+||+ +++ +++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST-------PLITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC-------CcEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence 34678999976 58999999999999999999999999999 554 8999999999864
No 144
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=1.9e-06 Score=57.55 Aligned_cols=56 Identities=32% Similarity=0.505 Sum_probs=50.0
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++..+.+++++.++++.|.+.+.+.+||+ ++ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR-------PVITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC-------CceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence 45678899876 59999999999999999999999999999 66 89999999999863
No 145
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=2.2e-06 Score=56.57 Aligned_cols=55 Identities=29% Similarity=0.426 Sum_probs=49.3
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...+.++|.. ++.++.+++++.++++.|.+++.+.+||+ |+ |+++|+||.+|+++
T Consensus 59 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT-------EVLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc-------CceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence 4678899976 58999999999999999999999999999 55 89999999999864
No 146
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.30 E-value=3.8e-06 Score=55.09 Aligned_cols=55 Identities=29% Similarity=0.546 Sum_probs=49.5
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..+.++|.. ++.++.+++++.++++.|.+++.+.+||+ +++++++|+|+..|+++
T Consensus 56 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR-------DPVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC-------CCeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence 367888877 59999999999999999999999999999 66799999999999853
No 147
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=2.7e-06 Score=58.00 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=48.9
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
.++.++|.. ++..+.+++++.++++.|.+.+.+.+||+ ++ |+++|+||..|+++
T Consensus 78 ~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 78 KKVEEIMTK-------KVITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCHHHhccC-------CceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence 378899876 58999999999999999999999999999 66 99999999999964
No 148
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=3.5e-06 Score=55.50 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=50.1
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+..+.++|.. ++.++.+++++.++++.|.+++...+||+ +++|+++|+++..|+++
T Consensus 56 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR-------DLVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC-------CCEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence 4578899876 59999999999999999999999999999 77799999999999853
No 149
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.30 E-value=1.5e-06 Score=58.91 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=46.6
Q ss_pred ccccHHHHhhhcCCCCCCCceE--e----cCCCcHHHHHHHHHHcCCCeEEEEecCCC-CcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLW--C----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~--v----~~~~tl~~a~~~~~~~~~~~ipVv~~d~~-~~~vGivt~~dil~ 117 (164)
...+++++|.. ++.. + .+++++.++++.|.+++.+.+||+ |++ |+++|+||.+|+++
T Consensus 62 ~~~~v~~im~~-------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTP-------KEDLKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCc-------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence 34679999975 2333 3 368999999999999999999999 665 79999999999964
No 150
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=3.3e-06 Score=57.14 Aligned_cols=58 Identities=31% Similarity=0.543 Sum_probs=49.4
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...+.++|.. +++++.+++++.++++.|.+++...+||++.+++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSS-------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcC-------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4578899976 599999999999999999999999999983124689999999999864
No 151
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=4e-06 Score=55.02 Aligned_cols=53 Identities=34% Similarity=0.515 Sum_probs=48.4
Q ss_pred cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL 116 (164)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil 116 (164)
.+.++|.. ++.++.+++++.++++.|.+++...+||+ +++|+++|+|+..|++
T Consensus 56 ~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~ 108 (110)
T cd04605 56 SVEDIMTR-------NVITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDIS 108 (110)
T ss_pred CHHHhcCC-------CCeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhh
Confidence 58888876 58999999999999999999999999999 7789999999999984
No 152
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=3.9e-06 Score=56.19 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=49.5
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..+.++|.. ++..+.+++++.++++.|.+++...+||+ +++++++|+++..|+++
T Consensus 67 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR-------DPITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC-------CCeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence 467888876 59999999999999999999999999999 77799999999999864
No 153
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.27 E-value=3.4e-06 Score=70.32 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=53.2
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~ 118 (164)
.+.+++++|++.. +++++.+++++.+|+++|.++++..+||+ |++++++|+||.+|+++.
T Consensus 159 ~~~~V~dIMt~~~-----~~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 159 LDTKVKDFMTPFE-----KLVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCCHHHHhCCCC-----CeEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence 4578999998522 38899999999999999999999999999 778999999999999763
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.27 E-value=4.2e-06 Score=55.05 Aligned_cols=56 Identities=27% Similarity=0.435 Sum_probs=49.7
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. ++..+.+++++.++++.|.+++...+||+ ++ ++++|+||..|+++
T Consensus 55 ~~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF-------PLITVDPDDFLFNALLLMTRHRIHRVVVR--EG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC-------CcEEECCCCcHHHHHHHHHHhCccEEEEe--eC-CEEEEEEEhHHhhc
Confidence 34678999976 59999999999999999999999999999 54 89999999999864
No 155
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=3.3e-06 Score=55.91 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=47.3
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+.++.++|.+ ++.++.+++++.+|++.|.+.+ .+||+ |++|+++|+||.+|+++
T Consensus 62 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~--~~~Vv--~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNT-------DVPVIIDDADIEEILHLLIDQP--FLPVV--DDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcC-------CCceecCCCCHHHHHHHHhcCC--ceeEE--eCCCeEEEEEEHHHhhc
Confidence 4678999987 5999999999999999998754 59999 77899999999999864
No 156
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.26 E-value=2.9e-06 Score=57.40 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=42.7
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
++.++++++++.+|+++|.+++.+.+||+ |++++++|+||..|+++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence 58999999999999999999999999999 77799999999999863
No 157
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.26 E-value=5e-06 Score=55.45 Aligned_cols=56 Identities=34% Similarity=0.470 Sum_probs=50.0
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.++|.. .+.++.+++++.++++.|.+.+.+.+||+ ++ |+++|+|+.+|+++
T Consensus 65 ~~~~v~~~~~~-------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK-------DVITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC-------CCeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence 34678899987 58999999999999999999999999999 55 89999999999864
No 158
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.24 E-value=3e-06 Score=65.19 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=55.9
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~ 121 (164)
...+++.+|++ ++.++.++++..+++-.+.+.+..++||+ |..|+++||||..|++..+..
T Consensus 313 ~~~~vk~imt~-------~v~tv~pdtpa~~lvp~lad~g~H~lpvl--d~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 313 RPPTVKGIMTT-------PVVTVRPDTPAVELVPRLADEGLHALPVL--DAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred CCCcccccccC-------cceeecCCCcHHHHHHHhhcCCcceeeEE--cCCCcEEEEeeHHHHHHHHHH
Confidence 45788999997 49999999999999999999999999999 899999999999999887653
No 159
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.24 E-value=3.9e-06 Score=66.27 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=51.5
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+.+.++.++|.+ ++.++.+++++.+|++.|.+++...+||+ + +++++|+||..|+++
T Consensus 266 ~~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~-~~~lvGiit~~dil~ 322 (326)
T PRK10892 266 LRQASIADVMTP-------GGIRVRPGILAVDALNLMQSRHITSVLVA--D-GDHLLGVLHMHDLLR 322 (326)
T ss_pred cccCCHHHhcCC-------CCEEECCCCCHHHHHHHHHHCCCcEEEEe--e-CCEEEEEEEhHHhHh
Confidence 345689999987 59999999999999999999999999999 5 578999999999975
No 160
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.21 E-value=5.6e-06 Score=68.65 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=52.4
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~ 119 (164)
..+.++|.. ++.++++++++.+|+++|.+++...+||+ |++++++|+||.+|+++..
T Consensus 148 ~~V~diMt~-------~~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 148 TQVRDVMST-------DLVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRAT 204 (479)
T ss_pred CCHHHhccC-------CceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHh
Confidence 568999987 69999999999999999999999999999 7788999999999998754
No 161
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.21 E-value=5.2e-06 Score=54.20 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=47.8
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
.++.++|.. .+.++.++.++.++++.|.+++...+||+ + +|+++|+||..|++.
T Consensus 50 ~~~~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR-------GIPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc-------CCcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence 357788876 58999999999999999999999999999 5 589999999999853
No 162
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.19 E-value=1.4e-06 Score=59.11 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=48.7
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH---------cCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ---------HNVGALVVVKPGEQKSVAGIITERDYLRK 118 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~---------~~~~~ipVv~~d~~~~~vGivt~~dil~~ 118 (164)
.+.+++++|.. ++.++.+++++.++.+++.. .+...+||+ +++|+++|+||.+|+++.
T Consensus 57 ~~~~v~~im~~-------~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 57 PSDPVSKALYK-------QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK--EKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred CCCcHHHHhhc-------cceecCCCCCHHHHHhhcccCCceEEEecccccccccc--ccccceEEEEehhHhhhh
Confidence 45799999988 69999999999999996532 356778888 777999999999999763
No 163
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.18 E-value=7e-06 Score=68.02 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=53.0
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
..+.++|+. ++.++.+++++.+|+++|.+++...+||+ |++++++|+||.+|+++...
T Consensus 146 ~~V~dIMt~-------~litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 146 TQVRDIMST-------DLVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRATI 203 (475)
T ss_pred CCHHHHccC-------CceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHh
Confidence 579999987 69999999999999999999999999999 77899999999999987543
No 164
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.17 E-value=8.3e-06 Score=68.10 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=54.7
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~ 121 (164)
.+.+|.++|++.. .++++.+++++.+|+++|.+++...+||+ |++++++|+||++|+++....
T Consensus 161 ~~~~V~eIMt~~~-----~lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 161 RETKLSEVMTSDD-----DLVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCcHHHHhccCC-----CcEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhhC
Confidence 4567999998621 27899999999999999999999999999 788999999999999876643
No 165
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.11 E-value=9.8e-06 Score=53.27 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=41.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
++.++++++++.++++.|.+++...+||+ + +|+++|+|+.+|+++
T Consensus 60 ~~~~v~~~~~l~~~~~~~~~~~~~~~pVv--~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 60 SPFTVSPRTSLEKVHQLFRKLGLRHLLVV--D-EGRLVGIITRKDLLK 104 (105)
T ss_pred CCceECCCCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEhhhhhc
Confidence 58999999999999999999999999999 4 689999999999854
No 166
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.11 E-value=1.2e-05 Score=53.19 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=47.7
Q ss_pred cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH-cCCCeEEEEecCCCC-cEEEEEehHHH
Q 031190 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERDY 115 (164)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~-~~~~~ipVv~~d~~~-~~vGivt~~di 115 (164)
.+.++|.. ++.++.++.++.++.+.|.. ++...+||+ ++++ +++|++|..|+
T Consensus 63 ~v~~v~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK-------PVVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccC-------CcEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence 68999987 59999999999999999999 699999999 6675 99999999997
No 167
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.07 E-value=1.3e-05 Score=53.29 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=48.1
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCC---CeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV---GALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~---~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
.+.+++++|.+ ++..+.+++++.++++.|.+++. ...||+ +++|+++|+|+..|+++
T Consensus 59 ~~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP-------DPLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC-------CcEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence 45679999987 59999999999999999998775 345688 67899999999999864
No 168
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.06 E-value=1.7e-05 Score=55.01 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=49.2
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.++|.. ++.++.+++++.+++..|.+++.+.+||+ ++ ++++|+|+.+|+++
T Consensus 88 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTK-------KVITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence 4578888877 59999999999999999999999999999 55 89999999999864
No 169
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.05 E-value=2.2e-05 Score=63.36 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=70.9
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc-cccccc----cCCCeEEE
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK-VGDIMT----EENKLITV 144 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~-v~~vm~----~~~~~~~v 144 (164)
++..+..+.++.+|++.|.+.+++.+||+ +..|+.+|.++..|+........-...+.. +++... ..++++++
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 48899999999999999999999999999 788888999999999544332221222223 333321 22368999
Q ss_pred cCCCCHHHHHHHHHhCCCC
Q 031190 145 SPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 145 ~~~~~l~e~~~~m~~~~~~ 163 (164)
.++.+|.+++..|..++.|
T Consensus 316 ~~~ssL~~vi~~lv~~~vH 334 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVH 334 (381)
T ss_pred eecchHHHHHHHHHhcCce
Confidence 9999999999999998876
No 170
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.04 E-value=2.4e-05 Score=50.66 Aligned_cols=53 Identities=26% Similarity=0.484 Sum_probs=47.8
Q ss_pred HHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 56 v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
+.++|.. ++..+.+++++.++++.|...+.+.+||+ |++++++|+++..|+++
T Consensus 60 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR-------DVVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC-------CceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence 6778876 58999999999999999999999999999 77799999999999853
No 171
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.03 E-value=1.8e-05 Score=67.13 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=50.8
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC--CcEEEEEehHHHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLRKI 119 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~--~~~vGivt~~dil~~~ 119 (164)
..+.++|.+ ++.++++++++.++++.|.+++.+.+||+ |++ ++++|+||.+|+++.+
T Consensus 512 ~~v~dim~~-------~~~~v~~d~~L~~al~~m~~~~~~~lpVV--d~~~~~~liGvIt~~DIl~~l 570 (574)
T PRK01862 512 KTAADYAHT-------PFPLLTPDMPLGDALEHFMAFQGERLPVV--ESEASPTLAGVVYKTSLLDAY 570 (574)
T ss_pred chHHHhccC-------CCeeECCCCCHHHHHHHHHhcCCCeeeeE--eCCCCCeEEEEEEHHHHHHHH
Confidence 578899877 58999999999999999999999999999 544 5899999999998765
No 172
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.02 E-value=3.6e-05 Score=60.67 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=56.4
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~ 121 (164)
.+.++..+|++ ++.++.+.+|++.+...|-=.++.-+||+ +++.+++|+||++|+++.+..
T Consensus 247 ~~t~ieKVMtk-------np~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 247 PSTTIEKVMTK-------NPITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCccHHHHhcc-------CCeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHHH
Confidence 56789999998 79999999999999999999999999999 889999999999999987753
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.98 E-value=3.1e-05 Score=50.45 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=47.3
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..+.++|.. ++.++..++++.++++.|..++...+||+ + +|+++|+|+..|+++
T Consensus 52 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d-~~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR-------DPPTVSPDDDVKEAAKLMVENNIRRVPVV--D-DGKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC-------CCceECCCCCHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHhhc
Confidence 457788876 58999999999999999999999999999 5 379999999999853
No 174
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.98 E-value=3e-05 Score=50.59 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=45.4
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...+.++|.. ++.++++++++.++.+.|.+ . ..+||+ +++|+++|+||.+|+++
T Consensus 56 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~-~-~~~~vv--~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE-------PLPTVDPDAPIEELSELLDR-G-NVAVVV--DEGGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC-------CCceeCCCCcHHHHHHHHHh-C-CceeEE--ecCCeEEEEEeHHHhhc
Confidence 3578899976 58999999999999999988 3 347888 67799999999999864
No 175
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.98 E-value=6e-05 Score=62.85 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=52.9
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
..++.++|..+ +++++.+++++.++++.|.+++.+.+||+ |++|+++|+||.+|+++...
T Consensus 146 ~~~V~dim~~~------~~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 146 SQPVSEVMTKE------RLVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhhh
Confidence 35688999722 58999999999999999999999999999 88999999999999987653
No 176
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.92 E-value=3.6e-05 Score=64.24 Aligned_cols=59 Identities=15% Similarity=0.320 Sum_probs=52.6
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~ 118 (164)
..++.++|++.. ++.++.++.++.+|+++|.+++...+||+ |++++++|+||.+|+++.
T Consensus 158 ~~~V~diMt~~~-----~lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 158 STPVSEVMTPRE-----KLVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKN 216 (495)
T ss_pred CCCHHHhhCCcC-----CceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhc
Confidence 467999998632 38999999999999999999999999999 788999999999999764
No 177
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.91 E-value=4.2e-05 Score=63.19 Aligned_cols=59 Identities=19% Similarity=0.376 Sum_probs=52.7
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~ 119 (164)
..++.++|.+. ++.++.+++++.++++.|.+++...+||+ |++|+++|+||.+|+++..
T Consensus 142 ~~~V~dvm~~~------~~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTRE------EVITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCC------CCEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence 45788999831 49999999999999999999999999999 8899999999999998754
No 178
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.89 E-value=5e-05 Score=53.53 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=49.5
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~ 119 (164)
+.+.+|.++|.. .+++++++.++..+-.++..+ .++.|+ ++|+++|+||..|+++.+
T Consensus 127 i~~~~vr~vM~e-------~fP~Vs~~~~l~vI~~LL~~~--~AVlV~---e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 127 IRSLRVREVMGE-------PFPTVSPDESLNVISQLLEEH--PAVLVV---ENGKVVGIITKADIMKLL 183 (187)
T ss_pred hhhhhHHHHhcC-------CCCcCCCCCCHHHHHHHHhhC--CeEEEE---eCCceEEEEeHHHHHHHH
Confidence 456899999988 699999999999999888875 668888 579999999999998754
No 179
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.88 E-value=3.8e-05 Score=63.79 Aligned_cols=58 Identities=22% Similarity=0.378 Sum_probs=53.7
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~ 119 (164)
...+|+++|+. ++.+++.++-+.+|.-.|.++++.++||+ ++|+++|+||..||++..
T Consensus 212 ~~~~V~evmT~-------p~~svd~~~~~feAml~m~r~~I~hl~V~---e~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 212 KTQKVSEVMTS-------PVISVDRGDFLFEAMLMMLRNRIKHLPVT---EDGQPLGILTLTDILRLF 269 (610)
T ss_pred cccchhhhhcc-------CceeecCcchHHHHHHHHHHhCCceeeee---cCCeeeEEeeHHHHHHhh
Confidence 45799999998 79999999999999999999999999999 579999999999998854
No 180
>PRK11573 hypothetical protein; Provisional
Probab=97.88 E-value=0.00012 Score=59.95 Aligned_cols=86 Identities=13% Similarity=0.206 Sum_probs=66.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccc-cccccccCCCeEEEcCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK-VGDIMTEENKLITVSPDT 148 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~-v~~vm~~~~~~~~v~~~~ 148 (164)
++..|+.+.++.++++.|++++.+-..|+ |+.|...|+||..|+++-+.+.-....+.. -..+....++.+.|+..+
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVv--DEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~ 340 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVV--DEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTA 340 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEE--ecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeee
Confidence 48899999999999999999999999999 889999999999999998875421111111 112222222578899999
Q ss_pred CHHHHHHHH
Q 031190 149 KVLRAMQLM 157 (164)
Q Consensus 149 ~l~e~~~~m 157 (164)
++.++.+.+
T Consensus 341 ~l~d~~~~l 349 (413)
T PRK11573 341 NVREINKAF 349 (413)
T ss_pred EHHHHHHHh
Confidence 999998877
No 181
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.86 E-value=4.7e-05 Score=58.34 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=45.7
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEe
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt 111 (164)
..++.++|.. ++.++.+++++.+|++.|.+++...+||+ |++|+++|+|+
T Consensus 219 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~GvI~ 268 (268)
T TIGR00393 219 KSEVRDFMTL-------GPKTFKLDALLLEALEFLERRKITSLVVV--DDHNKVLGVLH 268 (268)
T ss_pred cCcHHHhCCC-------CCeEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCeEEEEEC
Confidence 4679999987 58999999999999999999999999999 77889999986
No 182
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00012 Score=60.16 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=55.4
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
.+..++++|.+ .++.+.+++.-+++.++++++..-.+||+ |++++++|+||..|+++-+-
T Consensus 194 ~~~~i~~im~~-------~~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 194 PDELLKDLMED-------DVVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred cHhHHHHHhcc-------cceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHHH
Confidence 56789999998 59999999999999999999999999999 89999999999999987654
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00067 Score=55.27 Aligned_cols=78 Identities=9% Similarity=0.072 Sum_probs=64.5
Q ss_pred ecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHH
Q 031190 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRA 153 (164)
Q Consensus 74 v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~ 153 (164)
..++.+..+++..|...+.+.++|+ |++++++|+|+..++.+... ....+.+.+.. ...++++++++.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~ 359 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTALT------QQQGLDAALID--APLAVDAQTPLSEL 359 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhhh------cCCchhhhhcc--CCceeCCCCCHHHH
Confidence 4467789999999999999999999 88999999999999854321 12357777777 48899999999999
Q ss_pred HHHHHhCC
Q 031190 154 MQLMTGHM 161 (164)
Q Consensus 154 ~~~m~~~~ 161 (164)
+..|..+.
T Consensus 360 ~~~~~~~~ 367 (400)
T PRK10070 360 LSHVGQAP 367 (400)
T ss_pred HHHHHhCC
Confidence 99998754
No 184
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.59 E-value=0.00063 Score=55.93 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=66.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc-ccccccccCCCeEEEcCCC
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST-KVGDIMTEENKLITVSPDT 148 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~-~v~~vm~~~~~~~~v~~~~ 148 (164)
++..++++.++.++++.|++.+.+-..|+ |+-|.+.|+||..|+++.+.+.-....+. .-..+....++-+.++..+
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVv--DEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~ 357 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVV--DEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRV 357 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEE--EcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccc
Confidence 58999999999999999999999999999 88999999999999999887642211111 1112222211237899999
Q ss_pred CHHHHHHHHH
Q 031190 149 KVLRAMQLMT 158 (164)
Q Consensus 149 ~l~e~~~~m~ 158 (164)
++.++.+.+.
T Consensus 358 ~l~e~~~~l~ 367 (429)
T COG1253 358 PLEELEELLG 367 (429)
T ss_pred cHHHHHHHhC
Confidence 9999887763
No 185
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.59 E-value=0.0003 Score=56.59 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=49.0
Q ss_pred cHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
.+.+.+.. .+.++.+++++.+++..+.+++.. +||+ |++|+++|+|+..++++.+.
T Consensus 303 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 303 GLQDVLID-------DIYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred chhhhhcc-------CCceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHH
Confidence 45566655 588999999999999999999999 9999 88999999999999988764
No 186
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.0011 Score=52.97 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=72.2
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l 150 (164)
+..++.++++.+-+..|.+++-.--.|| |+-|.+.|+||..|+++-+.+.-....+....++....+.-+.++.+.++
T Consensus 277 pyFVPe~Tpl~~QL~~F~~~k~hialVV--DEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~i 354 (423)
T COG4536 277 PYFVPEGTPLSDQLVAFQRNKKHIALVV--DEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANV 354 (423)
T ss_pred CeecCCCCcHHHHHHHHHHhcceEEEEE--eccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcH
Confidence 8899999999999999999998888999 89999999999999999777653333445566776665567789999999
Q ss_pred HHHHHHHHh
Q 031190 151 LRAMQLMTG 159 (164)
Q Consensus 151 ~e~~~~m~~ 159 (164)
.++-+.|.+
T Consensus 355 RdlNr~l~W 363 (423)
T COG4536 355 RDLNRALDW 363 (423)
T ss_pred HHHHHhcCC
Confidence 999877754
No 187
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.42 E-value=0.002 Score=51.83 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=67.1
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKV 150 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l 150 (164)
.....++.+..++++.|...+.+.++|+ |.++++.|.|+..++..... ....+.+.+.. .+.++++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~ 321 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQARK------KAQGLQDVLID--DIYTVDAGTLL 321 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHhh------cCCchhhhhcc--CCceECCCCcH
Confidence 4456678889999999999999999999 78899999999999854321 12357778877 48899999999
Q ss_pred HHHHHHHHhCCC
Q 031190 151 LRAMQLMTGHML 162 (164)
Q Consensus 151 ~e~~~~m~~~~~ 162 (164)
.+++..|..++.
T Consensus 322 ~~~~~~~~~~~~ 333 (363)
T TIGR01186 322 RETVRKVLKAGI 333 (363)
T ss_pred HHHHHHHHhCCC
Confidence 999999988764
No 188
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.27 E-value=0.0015 Score=52.84 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=47.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~ 122 (164)
.+++|.++.|+.++++.+..++.++++|+ |++|.++|+||..|++..+...
T Consensus 311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VV--d~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVV--DEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ccEEEeecchHHHHHHHHHhcCceEEEEE--cCCCcEEEEeeHHHHHHHHHhC
Confidence 37999999999999999999999999999 7889999999999999887654
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0014 Score=53.38 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=44.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~ 122 (164)
...++.+++++.+++..+...... +||+ |++|+++|+|+..++++.+...
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 346 APLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CCceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhc
Confidence 588999999999999999997666 9999 8899999999999998877543
No 190
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.23 E-value=0.00093 Score=55.13 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=44.2
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~ 118 (164)
+.++.++|.. ++.++.+++++.++++.|.+++ .+|| +++++++|+||.+|+++.
T Consensus 399 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~~~~~~---~~vV--~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 399 DDAVSKVMSK-------KFIQIGEGEKLSDLSKFLEKNS---SAIV--TEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred CCCHHHhcCC-------CCeEECCcCcHHHHHHHHHHCC---eeEE--EECCEEEEEEEHHHHHHh
Confidence 3478899976 5889999999999999998753 3445 346899999999999874
No 191
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.00075 Score=56.97 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=78.0
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCC---CcEEEEEehHHHHHHHHHcC---C-
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQG---R- 124 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~---~~~vGivt~~dil~~~~~~~---~- 124 (164)
.+++++|+|.+ +++++..-..+..+++.++.+.++.+||+|..+. +++.|+|-++.++..+..+. .
T Consensus 580 r~L~a~ev~~~-------pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~ 652 (762)
T KOG0474|consen 580 RNLTAGEVMSK-------PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEES 652 (762)
T ss_pred hhhhHhhhccC-------CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccC
Confidence 57899999998 6999999999999999999999999999952222 57899999999865443220 0
Q ss_pred -CC--------------------------------cccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 125 -SS--------------------------------KSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 125 -~~--------------------------------~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.. .-..+..+|.+ .+++|++++++..+..++..-++
T Consensus 653 ~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGL 721 (762)
T KOG0474|consen 653 RSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGL 721 (762)
T ss_pred ccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcc
Confidence 00 01134555666 59999999999999999987554
No 192
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.026 Score=42.61 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=69.4
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC-CC---ccc
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-SS---KST 129 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~-~~---~~~ 129 (164)
..++++..+ .+.|+.+..+.-.++-|+.+++....|+ |+-|.+-|+||..|++..+.+.-. .+ ...
T Consensus 133 F~i~~lLRP--------av~VPESKrvd~lLkeFR~~RnHMAIVi--DEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~ 202 (293)
T COG4535 133 FDIKELLRP--------AVVVPESKRVDRLLKEFRSQRNHMAIVI--DEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDA 202 (293)
T ss_pred ccHHHhccc--------ceecccchhHHHHHHHHHhhcCceEEEE--eccCCeeeeEEHHHHHHHHhcccccccchhhhh
Confidence 456677766 8999999999999999999999999999 889999999999999998875411 11 122
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHH
Q 031190 130 KVGDIMTEENKLITVSPDTKVLRAMQLM 157 (164)
Q Consensus 130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m 157 (164)
.+..+-+. -+.|..=+++++--+.|
T Consensus 203 dI~~ls~~---~~~VrALT~IedFNe~F 227 (293)
T COG4535 203 DIRQLSRH---TWRVRALTEIEDFNEAF 227 (293)
T ss_pred hhHhhcCC---ceEEEecccHHHHHHHh
Confidence 24444333 67788888887766655
No 193
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.0088 Score=48.41 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=51.7
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
....+.++|++ +.++.+.+.++.++-+++.+++...+||+ |++|.++.+|++.|+.+
T Consensus 169 ~~~~~~~vmt~-------~~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 169 NSLLVSDVMTK-------NPVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMK 225 (503)
T ss_pred ccchhhhhccc-------ccccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhh
Confidence 35678899998 47889999999999999999999999999 88999999999999965
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.016 Score=49.25 Aligned_cols=46 Identities=26% Similarity=0.268 Sum_probs=43.2
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
.+.++.+++++..+..+|++-+..++.|+ +..++.+|++|++|+++
T Consensus 699 sPytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 699 SPYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLAR 744 (762)
T ss_pred CCcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhh
Confidence 69999999999999999999999999999 77788999999999964
No 195
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=95.87 E-value=0.011 Score=40.56 Aligned_cols=30 Identities=37% Similarity=0.394 Sum_probs=28.5
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEe
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVK 99 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~ 99 (164)
++.++.+++++.+|++.|.++++.++||++
T Consensus 87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 588999999999999999999999999994
No 196
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.1 Score=44.47 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=73.1
Q ss_pred cHHHHhhhcCCCCCCCceEecC-CCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCC---------
Q 031190 55 TISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR--------- 124 (164)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~-~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~--------- 124 (164)
-..++|.+... +.....+.. +.++.+...+|.+..++.+||+-.++.++++|+|.++++.-.+...+.
T Consensus 544 ~~~~v~~p~~~--~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~ 621 (696)
T KOG0475|consen 544 LAIPVMEPCRS--ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTS 621 (696)
T ss_pred hhhhhhchhcC--chhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecc
Confidence 34456655321 001444544 489999999999999999998753456789999999999877663210
Q ss_pred -------------CCcccccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 125 -------------SSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 125 -------------~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
......++++|.. .+.++...++.+-++.++++-+.
T Consensus 622 ~~f~~~~~~~~~~~~~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~ 670 (696)
T KOG0475|consen 622 IYFNDPSPSAVAGIPSRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGL 670 (696)
T ss_pred cccCCCCccccCCCCCCcCceeeccC--CcccccccCcHHHHHHHHHhhCc
Confidence 0112246777877 48899999999999999876543
No 197
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.59 E-value=0.04 Score=44.76 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=40.3
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
+..++++++++.+++..+.+..+. ++|+ |+ |+++|+|+..+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGGA-ILLV--EN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCCC-eEEe--eC-CeEEEEEeHHHHHHHHh
Confidence 478899999999999998887654 8888 54 99999999999988654
No 198
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=95.28 E-value=0.016 Score=33.26 Aligned_cols=30 Identities=47% Similarity=0.658 Sum_probs=26.7
Q ss_pred cccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 131 VGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 131 v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
++++|++ +++++++++++.++++.|.++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~ 30 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGI 30 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTS
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCC
Confidence 4678998 59999999999999999998875
No 199
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=94.66 E-value=0.027 Score=47.28 Aligned_cols=104 Identities=9% Similarity=0.132 Sum_probs=73.2
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHH-HHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccc
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVY-DAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST 129 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~-~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~ 129 (164)
+....++++|++-. ++..+..+..+. +........+++++||++++....+.|++....+ .... ........
T Consensus 201 l~ek~~~evmtpi~-----~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~-~~~~~~~~ 273 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIE-----DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQ-VEVPLEPL 273 (498)
T ss_pred HHHHHHHHhccchh-----hheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhc-cccccccc
Confidence 35678899999865 377788888887 5556677899999999953333445554444443 4332 22234566
Q ss_pred ccccccccCCCeEEEcCCCCHHHHHHHHHhCCCC
Q 031190 130 KVGDIMTEENKLITVSPDTKVLRAMQLMTGHMLL 163 (164)
Q Consensus 130 ~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~~ 163 (164)
++.+.+.. ....++.++++.+.+..+...+.|
T Consensus 274 ~v~~~~~~--~l~~vp~~~~~~~~l~~~~~~~~H 305 (498)
T KOG2118|consen 274 PVSESALL--RLPLVPENMPLLDLLNEFQKGKSH 305 (498)
T ss_pred cchhhhcc--ccccCCCcccHHHHHHHHhhhhce
Confidence 78888888 488999999999999988776543
No 200
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.81 E-value=0.26 Score=38.05 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=41.8
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
..++.+.|..... . +--.+.....-.+++..+...+.+.+||+ |++|+++|.||..+++.
T Consensus 248 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 248 LVSVADAVRRGEP-A--DGEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTVTRADLLD 307 (309)
T ss_pred hhhHHHhhccccc-c--cCCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEEEHHHHhh
Confidence 3566666655211 0 11223334455667888888899999999 89999999999999865
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.89 E-value=0.58 Score=40.13 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=48.4
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHH
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK 118 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~ 118 (164)
...+++|.. .+.++....+..-+++++++-+...+.|. .+|++.|+||.+|+++.
T Consensus 639 ~~lk~il~~-------tp~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 639 LDLKDILDM-------TPFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRH 693 (696)
T ss_pred cCceeeccC-------CcccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHh
Confidence 566677766 68999999999999999999999999988 58999999999999874
No 202
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.32 E-value=0.23 Score=43.46 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=52.0
Q ss_pred cccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHH
Q 031190 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119 (164)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~ 119 (164)
...+.|.++|.+ ++.++..+.|.+|..+.+.......+|+|+.-+.--++|.|.++.+...+
T Consensus 585 ~h~v~VE~iMV~-------dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 585 VHTVKVEHIMVT-------DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eeEEEeeeeccc-------cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 356899999998 79999999999999999998879999999622345689999999985443
No 203
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.88 E-value=0.72 Score=36.75 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=40.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
.+.++.+++.+.+.+....+.. ..++|+ |++++++|+++...++..+.
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVv--de~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAP-CPVAVV--DEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHHHHHHHHhcCC-CceeEE--cCCCcEEEEecHHHHHHHHh
Confidence 4778889999999888887754 468899 89999999999999988664
No 204
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=88.95 E-value=1.3 Score=36.16 Aligned_cols=84 Identities=11% Similarity=0.009 Sum_probs=54.2
Q ss_pred cccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccc
Q 031190 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132 (164)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~ 132 (164)
-.++.++|.+ ...+...+.. .+++. ++.+.++|+ |. |+++..+....... .....+.
T Consensus 273 ~l~a~~~m~~--------~~~~~~~~~~-~~~~~---~~~~~~~~~--~~-----~~~~~~~~~~~~~~----~~~~~~~ 329 (382)
T TIGR03415 273 VLTARSLMRP--------LTDLEHVDGG-WCVSD---RRDTWLFTI--DK-----QVRRRDAKLPVQAW----AAEQEVE 329 (382)
T ss_pred ceeHHHHhcc--------cccccccCcc-hhhhh---cccceeEee--cc-----ceecccchHhHhhc----ccccchh
Confidence 3688889954 3333323333 44443 688999999 54 89988886432211 1223466
Q ss_pred cccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 133 DIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 133 ~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
+ +.. ...++++++++.+++..+.....
T Consensus 330 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 356 (382)
T TIGR03415 330 S-LEA--APTVINPDTLMRDVLAARHRTGG 356 (382)
T ss_pred h-hcc--cCcccCCCCcHHHHHHHHhcCCC
Confidence 6 445 38899999999999998877653
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=85.53 E-value=1.8 Score=38.15 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=42.6
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~ 121 (164)
.+..+.+.+|+.++-.+|.--+.+..+|. +-|+++|+|..+++ ++++.
T Consensus 811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT---~~GrLvGVValkEL-RkAie 858 (931)
T KOG0476|consen 811 APFQLVEGTSLYKVHTLFSLLGLNHAYVT---SCGRLVGVVALKEL-RKAIE 858 (931)
T ss_pred CceeeeccchHHHHHHHHHHhccchhhhc---ccCcEEEEEEHHHH-HHHHH
Confidence 67888899999999999999999999999 57999999999998 54443
No 206
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=82.92 E-value=1.4 Score=28.85 Aligned_cols=32 Identities=28% Similarity=0.539 Sum_probs=28.1
Q ss_pred cccccccccCCCeEEEcCCCCHHHHHHHHHhCCC
Q 031190 129 TKVGDIMTEENKLITVSPDTKVLRAMQLMTGHML 162 (164)
Q Consensus 129 ~~v~~vm~~~~~~~~v~~~~~l~e~~~~m~~~~~ 162 (164)
.++.++|.+ ++.++++++++.++++.|.+++.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~ 89 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNI 89 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCC
Confidence 568999988 58899999999999999987764
No 207
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=74.40 E-value=1.9 Score=24.96 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=29.7
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCccccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS 35 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 35 (164)
+.|.+++...+.++..++++.++.+..+++-++.
T Consensus 3 ~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~ 36 (57)
T PF08220_consen 3 QQILELLKEKGKVSVKELAEEFGVSEMTIRRDLN 36 (57)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHH
Confidence 5688899999999999999999999888886653
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=71.33 E-value=4.6 Score=32.34 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=55.1
Q ss_pred ccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCccccccc
Q 031190 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133 (164)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~ 133 (164)
.+++++|... + ....-.+......+++.+.....+.+.++ +..++.+|+|+..+....
T Consensus 274 ltA~~IM~~~-~----~~~~~~~~~~~~~al~~~~~~~~~~~~~~--~~~~~~~g~v~~~~~~~~--------------- 331 (386)
T COG4175 274 LTAKDIMRRP-D----LLIRKTPGDGPRVALKLLRDEGREYGYAV--DRGNKFVGVVSIDSLVKA--------------- 331 (386)
T ss_pred eeHHHhhccc-c----cccccccccccchhhhhhhhccchhhHHH--hccCceeeEEeccchhcc---------------
Confidence 5888899852 1 12333344555678888998888888899 677889999999988442
Q ss_pred ccccCCCeEEEcCCCCHHHHHHHHHhC
Q 031190 134 IMTEENKLITVSPDTKVLRAMQLMTGH 160 (164)
Q Consensus 134 vm~~~~~~~~v~~~~~l~e~~~~m~~~ 160 (164)
.+.. .+..++.++++.+.+..+.+.
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~ 356 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQA 356 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcC
Confidence 2222 255666666666666555444
No 209
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=70.32 E-value=16 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=21.1
Q ss_pred CCeEEEEecCCCCcEEEEEehHHHHHHHHH
Q 031190 92 VGALVVVKPGEQKSVAGIITERDYLRKIIV 121 (164)
Q Consensus 92 ~~~ipVv~~d~~~~~vGivt~~dil~~~~~ 121 (164)
...+-|+ |++|..+|+++.++.++.+..
T Consensus 12 ~~~VrlI--~~~g~~lGv~~~~eAl~~A~~ 39 (76)
T PF05198_consen 12 APEVRLI--DEDGEQLGVMSLREALRLAKE 39 (76)
T ss_dssp -SEEEEE---TTS-EEEEEEHHHHHHHHHH
T ss_pred CCEEEEE--CCCCcEeceEEHHHHHHHHHH
Confidence 5678899 889999999999999876543
No 210
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=68.47 E-value=2.5 Score=23.86 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=24.0
Q ss_pred hHHHHH-hhcCCCChHHHHHHhCcccccccccc
Q 031190 3 GAIQSF-LSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 3 ~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
.|+.++ ...++++...|++.+++++.+++.++
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i 36 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVSRRTIRRDI 36 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 345555 66678999999999999888877654
No 211
>PF14044 NETI: NETI protein
Probab=64.03 E-value=11 Score=21.90 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEcCCCCHHHHHHHHHhCCCCC
Q 031190 143 TVSPDTKVLRAMQLMTGHMLLP 164 (164)
Q Consensus 143 ~v~~~~~l~e~~~~m~~~~~~~ 164 (164)
-|.++.++.++++.|.+.++.|
T Consensus 3 eV~enETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYMP 24 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCCc
Confidence 4789999999999999998866
No 212
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=60.84 E-value=3.9 Score=24.50 Aligned_cols=34 Identities=6% Similarity=0.145 Sum_probs=26.3
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCccccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS 35 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 35 (164)
+.|.+.++..+.++..+|+.+++..++.+++.+.
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~ 36 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELAREFGISPEAVEAMLE 36 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4677889999999999999999998888877653
No 213
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=57.71 E-value=13 Score=23.42 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=24.7
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeEEE
Q 031190 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVV 97 (164)
Q Consensus 69 ~~~~~v~~~~tl~~a~~~~~~~~~~~ipV 97 (164)
|++++++.+.-+.+|+++...++-+.+.+
T Consensus 50 GDp~tiSS~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 50 GDPCTISSQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred CCceeecCHHHHHHHHHHHHhcCcccEEE
Confidence 68999999999999999998887665543
No 214
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=55.82 E-value=11 Score=20.50 Aligned_cols=29 Identities=3% Similarity=0.186 Sum_probs=22.5
Q ss_pred hHHHHHhhcCCCChHHHHHHhCccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 31 (164)
.|+..+..++.++..+|++.+++++++..
T Consensus 7 ~Il~~l~~~~~~t~~ela~~~~is~~tv~ 35 (48)
T PF13412_consen 7 KILNYLRENPRITQKELAEKLGISRSTVN 35 (48)
T ss_dssp HHHHHHHHCTTS-HHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHH
Confidence 46778888899999999999999776654
No 215
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=54.65 E-value=16 Score=24.13 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=13.5
Q ss_pred CeEEEEecCCCCcEEEEEeh
Q 031190 93 GALVVVKPGEQKSVAGIITE 112 (164)
Q Consensus 93 ~~ipVv~~d~~~~~vGivt~ 112 (164)
-..||. |.+|+++|+|..
T Consensus 92 ~~~PV~--d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVY--DSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE---TTS-EEEEEEE
T ss_pred EEEeeE--CCCCcEEEEEEE
Confidence 457999 789999999975
No 216
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=50.84 E-value=12 Score=22.39 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=25.3
Q ss_pred hHHHHHhhcCC--CChHHHHHHhCcccccccccc
Q 031190 3 GAIQSFLSHGN--IVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 3 ~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~ 34 (164)
.|..++...++ ++..+|+..+++++......+
T Consensus 10 ~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L 43 (68)
T smart00550 10 KILEFLENSGDETSTALQLAKNLGLPKKEVNRVL 43 (68)
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 56777888876 999999999999776655443
No 217
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=50.72 E-value=24 Score=30.30 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHHHH
Q 031190 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117 (164)
Q Consensus 77 ~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~dil~ 117 (164)
...++.+.+...+.+-.-++|+ .++++.|+|..+|+.+
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~---~~~~~~GVI~LkDivK 449 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVV---ENGRILGVIYLKDIVK 449 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEE---ECCEEEEEEEehhhcc
Confidence 4457777888888888999999 4789999999999975
No 218
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.35 E-value=15 Score=25.04 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=27.3
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCcccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP 32 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 32 (164)
.+|+++++.+|.+|..++....+.++.++..
T Consensus 15 ~rIvElVRe~GRiTi~ql~~~TGasR~Tvk~ 45 (127)
T PF06163_consen 15 ARIVELVREHGRITIKQLVAKTGASRNTVKR 45 (127)
T ss_pred HHHHHHHHHcCCccHHHHHHHHCCCHHHHHH
Confidence 4789999999999999999999998877654
No 219
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=45.57 E-value=50 Score=23.78 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=32.8
Q ss_pred ccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH
Q 031190 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (164)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di 115 (164)
...++.|+|.-..- ++..++.+--+.--+--......-.+.-. |.+|++||+|-.+-.
T Consensus 5 R~ar~~DL~~mQ~~----Nl~~lpENyqmkyylyh~lswp~lSyVA~--D~~gkiVGYvlAkme 62 (193)
T KOG3235|consen 5 RRARPDDLLEMQHC----NLLNLPENYQMKYYLYHGLSWPQLSYVAE--DENGKIVGYVLAKME 62 (193)
T ss_pred ccCCHHHHHHhhhc----ccccCcHHHhHHHHHHhhcccccceEEEE--cCCCcEEEEeeeehh
Confidence 44567777543111 45556665555444444333333333334 789999999987654
No 220
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=43.97 E-value=19 Score=21.83 Aligned_cols=35 Identities=0% Similarity=0.189 Sum_probs=26.6
Q ss_pred HHHHhhcCCCChHHHHHHhCccccccccccccccc
Q 031190 5 IQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE 39 (164)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 39 (164)
+..+|..-.++.+++|..+|++|.++...-...++
T Consensus 6 ~k~~R~~~~ltQ~elA~~vgVsRQTi~~iEkgky~ 40 (68)
T COG1476 6 LKELRAELGLTQEELAKLVGVSRQTIIAIEKGKYN 40 (68)
T ss_pred HHHHHHHhCcCHHHHHHHcCcCHHHHHHHHcCCCC
Confidence 45567777899999999999999887655544333
No 221
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=43.83 E-value=27 Score=18.75 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=20.9
Q ss_pred hHHHHHhhcCCCChHHHHHHhCcccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPML 30 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 30 (164)
.|+.++...+..+-.+|++.++++.++.
T Consensus 7 ~Il~~Lq~d~r~s~~~la~~lglS~~~v 34 (42)
T PF13404_consen 7 KILRLLQEDGRRSYAELAEELGLSESTV 34 (42)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHTS-HHHH
T ss_pred HHHHHHHHcCCccHHHHHHHHCcCHHHH
Confidence 5778888889999999999999976553
No 222
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=41.66 E-value=29 Score=20.92 Aligned_cols=17 Identities=6% Similarity=0.337 Sum_probs=12.9
Q ss_pred eEEEEecCCCCcEEEEEeh
Q 031190 94 ALVVVKPGEQKSVAGIITE 112 (164)
Q Consensus 94 ~ipVv~~d~~~~~vGivt~ 112 (164)
+.||. +++|+++|++..
T Consensus 18 s~pi~--~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIY--DDDGKIIGVVGI 34 (81)
T ss_dssp EEEEE--ETTTEEEEEEEE
T ss_pred EEEEE--CCCCCEEEEEEE
Confidence 46888 668999998643
No 223
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=41.63 E-value=15 Score=28.11 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=30.6
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCccccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS 35 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 35 (164)
+.|++++...|.++.+++++.++.+..++|-++.
T Consensus 8 ~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~ 41 (253)
T COG1349 8 QKILELLKEKGKVSVEELAELFGVSEMTIRRDLN 41 (253)
T ss_pred HHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHH
Confidence 5688999999999999999999999999987654
No 224
>smart00594 UAS UAS domain.
Probab=40.51 E-value=37 Score=22.57 Aligned_cols=64 Identities=8% Similarity=0.216 Sum_probs=40.1
Q ss_pred hhhhcCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHHcC---CCeEEEEecCCCC---------cEEEEEeh
Q 031190 45 RMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN---VGALVVVKPGEQK---------SVAGIITE 112 (164)
Q Consensus 45 ~~~~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~~~---~~~ipVv~~d~~~---------~~vGivt~ 112 (164)
.+...-|.+-.|.+.+.. +++....+.+-.+..++....+ +-.+.++ +.++ ++-|.++.
T Consensus 44 ~~~r~vl~~~~V~~~i~~-------~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l--~~~~g~~~~~~~~~~~G~~~~ 114 (122)
T smart00594 44 VFNRDVLCNEAVKSLIRE-------NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV--DPRTGQRVIEWVGVVEGEISP 114 (122)
T ss_pred HHHHHHccCHHHHHHHHc-------CEEEEEecCCChhHHHHHHhcCcCCCCEEEEE--ecCCCceeEEEeccccCCCCH
Confidence 344455777888888876 4777666666566666666654 4555677 4443 44566666
Q ss_pred HHHHH
Q 031190 113 RDYLR 117 (164)
Q Consensus 113 ~dil~ 117 (164)
.+++.
T Consensus 115 ~~l~~ 119 (122)
T smart00594 115 EELMT 119 (122)
T ss_pred HHHHH
Confidence 66654
No 225
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=40.40 E-value=22 Score=19.26 Aligned_cols=19 Identities=0% Similarity=0.097 Sum_probs=13.8
Q ss_pred CChHHHHHHhCcccccccc
Q 031190 14 IVKSAVLQRIRLVNPMLRP 32 (164)
Q Consensus 14 ~~~~~i~~~~~~~~~~~~~ 32 (164)
.+..+||..+++++.+++-
T Consensus 22 ~si~~IA~~~gvsr~TvyR 40 (45)
T PF02796_consen 22 MSIAEIAKQFGVSRSTVYR 40 (45)
T ss_dssp --HHHHHHHTTS-HHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 8999999999998887654
No 226
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=36.77 E-value=24 Score=22.00 Aligned_cols=23 Identities=0% Similarity=0.072 Sum_probs=18.5
Q ss_pred CCCChHHHHHHhCcccccccccc
Q 031190 12 GNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 12 ~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
..++|+.|++.++++|..+-..+
T Consensus 18 ~~~SGe~La~~LgiSRtaVwK~I 40 (79)
T COG1654 18 NFVSGEKLAEELGISRTAVWKHI 40 (79)
T ss_pred CcccHHHHHHHHCccHHHHHHHH
Confidence 36999999999999887765443
No 227
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=36.42 E-value=13 Score=23.10 Aligned_cols=33 Identities=3% Similarity=0.033 Sum_probs=22.2
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCcccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
+-|.+++..+.|++.+.+|..++.+....+..+
T Consensus 27 r~LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L 59 (77)
T PF12324_consen 27 RPLLRLLAKGQPVTVEQLAAALGWPVEEVRAAL 59 (77)
T ss_dssp HHHHHHHTTTS-B-HHHHHHHHT--HHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 346777888889999999999998766655444
No 228
>PRK10638 glutaredoxin 3; Provisional
Probab=36.19 E-value=1e+02 Score=18.69 Aligned_cols=41 Identities=7% Similarity=-0.022 Sum_probs=21.8
Q ss_pred ceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH
Q 031190 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di 115 (164)
+..++.+..-....++...++...+|++ --+|+++| ...++
T Consensus 29 y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig--G~~~~ 69 (83)
T PRK10638 29 FQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG--GCDDL 69 (83)
T ss_pred cEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe--CHHHH
Confidence 4444443332222334455688899988 34566654 33565
No 229
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=35.14 E-value=56 Score=23.68 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=16.4
Q ss_pred CcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH
Q 031190 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (164)
Q Consensus 78 ~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di 115 (164)
.+..+|+.+..+.+.+-+-|- ++....+.=+++...+
T Consensus 35 ~~~~eAl~~A~~~~lDLV~v~-~~~~PPVckI~dy~k~ 71 (177)
T PRK00028 35 VSTREALELAEEAGLDLVEIS-PNAKPPVCKIMDYGKF 71 (177)
T ss_pred eeHHHHHHHHHHcCCCEEEEC-CCCCCCEEEEEeHHHH
Confidence 344555555555555444433 1222334444444443
No 230
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=34.50 E-value=25 Score=22.50 Aligned_cols=19 Identities=21% Similarity=0.213 Sum_probs=16.2
Q ss_pred HcCCCeEEEEecCCCCcEEEE
Q 031190 89 QHNVGALVVVKPGEQKSVAGI 109 (164)
Q Consensus 89 ~~~~~~ipVv~~d~~~~~vGi 109 (164)
..+.|.=||+ |.+|+++|+
T Consensus 102 ~~G~SGgpv~--~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGSSGGPVF--DSDGRVVGI 120 (120)
T ss_dssp STTTTTSEEE--ETTSEEEEE
T ss_pred CCCcEeHhEE--CCCCEEEeC
Confidence 3478999999 789999997
No 231
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=34.47 E-value=1.3e+02 Score=19.41 Aligned_cols=67 Identities=10% Similarity=0.307 Sum_probs=43.6
Q ss_pred hhhhhcCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH---cCCCeEEEEecCC-CCcE----EEEEehHHH
Q 031190 44 ARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ---HNVGALVVVKPGE-QKSV----AGIITERDY 115 (164)
Q Consensus 44 ~~~~~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~---~~~~~ipVv~~d~-~~~~----vGivt~~di 115 (164)
..+...-|.+-.|.+.+.. +++.+..+.+-.++.++... .++-.+.++ |. +|++ .|.++..++
T Consensus 33 ~~~~~~vl~~~~v~~~l~~-------~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i--~~~~g~~l~~~~G~~~~~~f 103 (114)
T cd02958 33 QVLNRDLWSNESVKEFIRE-------NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII--DPRTGEVLKVWSGNITPEDL 103 (114)
T ss_pred HHHHHHHcCCHHHHHHHHh-------CEEEEEecCCCccHHHHHHHhCccCCCeEEEE--eCccCcEeEEEcCCCCHHHH
Confidence 4444556778889998876 47666665543455555444 455667778 55 5654 588888888
Q ss_pred HHHH
Q 031190 116 LRKI 119 (164)
Q Consensus 116 l~~~ 119 (164)
+..+
T Consensus 104 ~~~L 107 (114)
T cd02958 104 LSQL 107 (114)
T ss_pred HHHH
Confidence 7654
No 232
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=34.31 E-value=1.3e+02 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCcEEEEEehHHHHHHHH
Q 031190 91 NVGALVVVKPGEQKSVAGIITERDYLRKII 120 (164)
Q Consensus 91 ~~~~ipVv~~d~~~~~vGivt~~dil~~~~ 120 (164)
+...+-++ |.+|.-+|+++..+.|..+-
T Consensus 17 r~~evrlI--g~~GeqlGiv~~~eAL~lA~ 44 (176)
T COG0290 17 RAREVRLI--GEDGEQLGIVSIEEALKLAE 44 (176)
T ss_pred cccEEEEE--CCCCcEEcceeHHHHHHHHH
Confidence 45677888 78899999999999887543
No 233
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=34.03 E-value=44 Score=20.87 Aligned_cols=33 Identities=3% Similarity=-0.026 Sum_probs=27.3
Q ss_pred hHHHHHhhcCCCChHHHHHHhCcccccccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS 36 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 36 (164)
.|++++.. +.++..+|++.+++++.+..-++..
T Consensus 10 ~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L~~ 42 (80)
T TIGR02844 10 EIGKYIVE-TKATVRETAKVFGVSKSTVHKDVTE 42 (80)
T ss_pred HHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHhcC
Confidence 46788888 9999999999999988887766643
No 234
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=33.94 E-value=29 Score=26.46 Aligned_cols=34 Identities=6% Similarity=0.058 Sum_probs=29.7
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCccccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS 35 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 35 (164)
+.|.+++...+.++..+|++.++.+..++|-++.
T Consensus 10 ~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~ 43 (252)
T PRK10681 10 GQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLN 43 (252)
T ss_pred HHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHH
Confidence 4578889999999999999999999999886654
No 235
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=31.16 E-value=49 Score=25.38 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=24.4
Q ss_pred hHHHHHhhcCCCChHHHHHHhCccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 31 (164)
.|++++++.+|+....||+++++..+++.
T Consensus 27 ~Il~lL~~k~plNvneiAe~lgLpqst~s 55 (308)
T COG4189 27 AILQLLHRKGPLNVNEIAEALGLPQSTMS 55 (308)
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCchhhhh
Confidence 46788999999999999999999665544
No 236
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=31.14 E-value=26 Score=25.41 Aligned_cols=34 Identities=6% Similarity=-0.005 Sum_probs=30.0
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCccccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS 35 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 35 (164)
+.|.+++...+.++..++++.++.+..++|-++.
T Consensus 10 ~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~ 43 (185)
T PRK04424 10 KALQELIEENPFITDEELAEKFGVSIQTIRLDRM 43 (185)
T ss_pred HHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHH
Confidence 4678889999999999999999999999987764
No 237
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=30.24 E-value=68 Score=22.97 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH
Q 031190 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (164)
Q Consensus 79 tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di 115 (164)
+..+|+++..+.+.+-+-|- ++.+..++=+++...+
T Consensus 24 ~~~eAl~~A~~~~lDLVev~-~~a~PPVckImdy~k~ 59 (165)
T TIGR00168 24 SREEALEIAEEAGLDLVLIS-PNAKPPVCKIMDYGKY 59 (165)
T ss_pred cHHHHHHHHHHcCCcEEEEC-CCCCCCEEEEeeHHHH
Confidence 36666666666666644443 1233445555555554
No 238
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=30.18 E-value=91 Score=19.64 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCeEEEEecCCCCcEEEEEehH
Q 031190 81 YDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113 (164)
Q Consensus 81 ~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~ 113 (164)
....+.+. .+...+.|+ ..+++++|++...
T Consensus 33 ~~~~~~~~-~~~~~~~v~--~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 33 EDLEEYLE-EGSHTIFVA--EEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHC-TCCCEEEEE--EETTEEEEEEEEE
T ss_pred HHHHHHHH-hcCCEEEEE--EECCEEEEEEEEc
Confidence 33333444 444677777 5688999999864
No 239
>CHL00199 infC translation initiation factor 3; Provisional
Probab=30.06 E-value=78 Score=23.13 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=12.0
Q ss_pred CeEEEEecCCCCcEEEEEehHHHHHH
Q 031190 93 GALVVVKPGEQKSVAGIITERDYLRK 118 (164)
Q Consensus 93 ~~ipVv~~d~~~~~vGivt~~dil~~ 118 (164)
..+-|+ |++|..+|+++..+.++.
T Consensus 25 ~~VrlI--~~~G~~lGv~~~~eAl~~ 48 (182)
T CHL00199 25 PKVRVI--DDSGEQLGIFTSEQAIQL 48 (182)
T ss_pred CEEEEE--CCCCcCCCceeHHHHHHH
Confidence 344455 445555555555555443
No 240
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=29.53 E-value=38 Score=19.41 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=21.7
Q ss_pred hHHHHHhhcCCCChHHHHHHhCccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 31 (164)
.|.+.+...++.+..+|++.+++..+++.
T Consensus 14 ~Il~~L~~~~~~t~~ela~~l~~~~~t~s 42 (61)
T PF12840_consen 14 RILRLLASNGPMTVSELAEELGISQSTVS 42 (61)
T ss_dssp HHHHHHHHCSTBEHHHHHHHHTS-HHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCHHHHH
Confidence 35566677889999999999998665543
No 241
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=29.23 E-value=32 Score=18.74 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=20.2
Q ss_pred ChhHHHHHhhcCCCChHHHHHHhCccccccc
Q 031190 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 31 (164)
|+.+++.++.++ .+.-..+..+++.+.++.
T Consensus 5 l~~Ai~~v~~g~-~S~r~AA~~ygVp~sTL~ 34 (45)
T PF05225_consen 5 LQKAIEAVKNGK-MSIRKAAKKYGVPRSTLR 34 (45)
T ss_dssp HHHHHHHHHTTS-S-HHHHHHHHT--HHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHCcCHHHHH
Confidence 455667777555 888999999999777765
No 242
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=29.04 E-value=29 Score=26.53 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=29.0
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCcccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
+.|.++++..+.++..+|++.++.++.++|-++
T Consensus 8 ~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL 40 (256)
T PRK10434 8 AAILEYLQKQGKTSVEELAQYFDTTGTTIRKDL 40 (256)
T ss_pred HHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHH
Confidence 467888999999999999999999999988654
No 243
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=28.72 E-value=49 Score=19.21 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=21.2
Q ss_pred HHHHHhhcCCCChHHHHHHhCcccccccc
Q 031190 4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRP 32 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 32 (164)
|-++-..+++++..+||+.+++.+++...
T Consensus 13 Iy~l~~~~~~v~~~~iA~~L~vs~~tvt~ 41 (60)
T PF01325_consen 13 IYELSEEGGPVRTKDIAERLGVSPPTVTE 41 (60)
T ss_dssp HHHHHHCTSSBBHHHHHHHHTS-HHHHHH
T ss_pred HHHHHcCCCCccHHHHHHHHCCChHHHHH
Confidence 44555566789999999999997776543
No 244
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=27.50 E-value=48 Score=17.67 Aligned_cols=31 Identities=6% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCChHHHHHHhCcccccccccc
Q 031190 4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
+.+.+...++.+..+|++.+++++++.+..+
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~s~~tv~~~l 35 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGVSEMTIRRDL 35 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 4455556677999999999998777765443
No 245
>PF14420 Clr5: Clr5 domain
Probab=27.35 E-value=64 Score=18.29 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=15.6
Q ss_pred EEcCCCCHHHHHHHH-HhCCCC
Q 031190 143 TVSPDTKVLRAMQLM-TGHMLL 163 (164)
Q Consensus 143 ~v~~~~~l~e~~~~m-~~~~~~ 163 (164)
.+.++.+|.++.+.| ..++|.
T Consensus 16 Y~~e~~tl~~v~~~M~~~~~F~ 37 (54)
T PF14420_consen 16 YIDENKTLEEVMEIMKEEHGFK 37 (54)
T ss_pred HHhCCCcHHHHHHHHHHHhCCC
Confidence 356788899999999 445664
No 246
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=26.95 E-value=69 Score=22.34 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=16.7
Q ss_pred CCCeEEEEecCCCCcEEEEEeh
Q 031190 91 NVGALVVVKPGEQKSVAGIITE 112 (164)
Q Consensus 91 ~~~~ipVv~~d~~~~~vGivt~ 112 (164)
+=|.=|+. |+.|+++|||--
T Consensus 106 GDSGRpi~--DNsGrVVaIVLG 125 (158)
T PF00944_consen 106 GDSGRPIF--DNSGRVVAIVLG 125 (158)
T ss_dssp TSTTEEEE--STTSBEEEEEEE
T ss_pred CCCCCccC--cCCCCEEEEEec
Confidence 55788999 889999999854
No 247
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.91 E-value=73 Score=15.08 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=10.5
Q ss_pred HHHHHHHHHhCCCCC
Q 031190 150 VLRAMQLMTGHMLLP 164 (164)
Q Consensus 150 l~e~~~~m~~~~~~~ 164 (164)
..++++.|.+.++.|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 456677777777776
No 248
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=25.72 E-value=83 Score=19.83 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=11.2
Q ss_pred CeEEEEecCCCCcEEEEE
Q 031190 93 GALVVVKPGEQKSVAGII 110 (164)
Q Consensus 93 ~~ipVv~~d~~~~~vGiv 110 (164)
...|+. +++|++.|++
T Consensus 84 ~~~P~~--~~~g~~~G~v 99 (106)
T PF13596_consen 84 RYRPYR--DEDGEYAGAV 99 (106)
T ss_dssp EEEEEE---TTS-EEEEE
T ss_pred EEEEEE--CCCCCEEEEE
Confidence 556888 7789999986
No 249
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=25.46 E-value=30 Score=20.47 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=22.3
Q ss_pred HHHHHhh-cCCCChHHHHHHhCcccccccccc
Q 031190 4 AIQSFLS-HGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 4 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
|++.+.. ++|++..+||+.+++++.+.+..+
T Consensus 5 Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL 36 (62)
T PF04703_consen 5 ILEYIKEQNGPLKTREIADALGLSIYQARYYL 36 (62)
T ss_dssp HHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 4566666 789999999999999777666544
No 250
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=25.33 E-value=64 Score=20.65 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=25.8
Q ss_pred hHHHHHhhcCCCChHHHHHHhCcccccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
.|+..+...++.+..+|++.+++++++.+..+
T Consensus 7 ~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l 38 (108)
T smart00344 7 KILEELQKDARISLAELAKKVGLSPSTVHNRV 38 (108)
T ss_pred HHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46677888889999999999999877766544
No 251
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=24.93 E-value=55 Score=24.62 Aligned_cols=29 Identities=7% Similarity=0.198 Sum_probs=25.0
Q ss_pred hHHHHHhhcCCCChHHHHHHhCccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 31 (164)
.|..++...++.+.++|++.|+++....+
T Consensus 15 ~il~lL~~~g~~sa~elA~~Lgis~~avR 43 (218)
T COG2345 15 RILELLKKSGPVSADELAEELGISPMAVR 43 (218)
T ss_pred HHHHHHhccCCccHHHHHHHhCCCHHHHH
Confidence 56677888899999999999999888765
No 252
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=24.76 E-value=65 Score=22.36 Aligned_cols=31 Identities=3% Similarity=0.173 Sum_probs=26.1
Q ss_pred hHHHHHhhcCCCChHHHHHHhCccccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRPV 33 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 33 (164)
.|+.++...+..+-.+|++.+++++++...-
T Consensus 13 ~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~R 43 (153)
T PRK11179 13 GILEALMENARTPYAELAKQFGVSPGTIHVR 43 (153)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 5788899999999999999999977775543
No 253
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=24.67 E-value=49 Score=18.23 Aligned_cols=30 Identities=7% Similarity=0.189 Sum_probs=21.0
Q ss_pred HHHHHhhcCCCChHHHHHHhCcccccccccc
Q 031190 4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
++..+. .++.+..+|++.++++++++...+
T Consensus 2 il~~l~-~~~~~~~~i~~~l~is~~~v~~~l 31 (66)
T smart00418 2 ILKLLA-EGELCVCELAEILGLSQSTVSHHL 31 (66)
T ss_pred HHHHhh-cCCccHHHHHHHHCCCHHHHHHHH
Confidence 345555 678899999999988666655433
No 254
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=24.16 E-value=45 Score=18.06 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCChHHHHHHhCcccccccc
Q 031190 4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRP 32 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 32 (164)
|+.++.. ++.+..+|++.+++.++++..
T Consensus 7 Il~~L~~-~~~~~~el~~~l~~s~~~vs~ 34 (47)
T PF01022_consen 7 ILKLLSE-GPLTVSELAEELGLSQSTVSH 34 (47)
T ss_dssp HHHHHTT-SSEEHHHHHHHHTS-HHHHHH
T ss_pred HHHHHHh-CCCchhhHHHhccccchHHHH
Confidence 3444444 889999999999997776543
No 255
>PRK04140 hypothetical protein; Provisional
Probab=23.86 E-value=1.7e+02 Score=23.40 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=50.8
Q ss_pred HHHhhcCCCChHHHHHHhCccccccccccccccc-cccc-hhhhhc-CcccccHHHHhhhcCCCCCCCceEec-CCCcHH
Q 031190 6 QSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSS-ARMEEH-GFESTTISDILKAKGKGADGSWLWCT-TDDTVY 81 (164)
Q Consensus 6 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~v~dim~~~~~~~~~~~~~v~-~~~tl~ 81 (164)
+..|....++..++|+.+++++.++......... .... ..++.. +..-...-|++..... +......+ .+....
T Consensus 132 k~lRe~~GlSq~eLA~~lGVSr~tIskyE~G~~~Ps~e~~~kLa~~Lgv~l~~~iD~l~~~~~--~~~~~~~~~~~~~~~ 209 (317)
T PRK04140 132 REAREELGLSLGELASELGVSRRTISKYENGGMNASIEVAIKLEEILDVPLTKPIDILEKVRD--DEVTPEDPEEDPFEK 209 (317)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCChHHHHHHhccccc--cccccccCCCCHHHH
Confidence 3456677899999999999987776554432222 1111 111111 1111122355554210 00112233 455557
Q ss_pred HHHHHHHHcCCCeEEEE
Q 031190 82 DAVKSMTQHNVGALVVV 98 (164)
Q Consensus 82 ~a~~~~~~~~~~~ipVv 98 (164)
+++..|...+++..|+.
T Consensus 210 ~il~~l~~~G~~~~~~~ 226 (317)
T PRK04140 210 EILNVLTRLGFDVLPTK 226 (317)
T ss_pred HHHHHHHHCCCcEEEee
Confidence 89999999999999987
No 256
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=23.84 E-value=1.9e+02 Score=17.90 Aligned_cols=41 Identities=5% Similarity=-0.115 Sum_probs=21.1
Q ss_pred ceEecCCCcHHHHHHHH-HHcCCCeEEEEecCCCCcEEEEEehHHHH
Q 031190 71 WLWCTTDDTVYDAVKSM-TQHNVGALVVVKPGEQKSVAGIITERDYL 116 (164)
Q Consensus 71 ~~~v~~~~tl~~a~~~~-~~~~~~~ipVv~~d~~~~~vGivt~~dil 116 (164)
+..++.... .++.+.+ ...+...+|++ =-+|+++| ...++.
T Consensus 40 y~~idv~~~-~~~~~~l~~~~g~~tvP~v--fi~g~~iG--G~~~l~ 81 (90)
T cd03028 40 FGTFDILED-EEVRQGLKEYSNWPTFPQL--YVNGELVG--GCDIVK 81 (90)
T ss_pred eEEEEcCCC-HHHHHHHHHHhCCCCCCEE--EECCEEEe--CHHHHH
Confidence 444444333 3343443 33567778876 34566643 445553
No 257
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=23.67 E-value=1.4e+02 Score=18.13 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=18.4
Q ss_pred eEEEcCCCCHHHHHHHH-HhCCCCC
Q 031190 141 LITVSPDTKVLRAMQLM-TGHMLLP 164 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~m-~~~~~~~ 164 (164)
.+.+.+++++.|++... .++++.|
T Consensus 13 ~V~vrpg~ti~d~L~~~c~kr~l~~ 37 (72)
T cd01760 13 VVPVRPGMSVRDVLAKACKKRGLNP 37 (72)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCH
Confidence 66789999999988764 6666644
No 258
>PHA00673 acetyltransferase domain containing protein
Probab=23.61 E-value=1.6e+02 Score=20.79 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHcCCCeEEEEecCCCCcEEEEEehHHH
Q 031190 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115 (164)
Q Consensus 78 ~tl~~a~~~~~~~~~~~ipVv~~d~~~~~vGivt~~di 115 (164)
.+-.++++.+.....+.+.|. ..+|+++|.+...-+
T Consensus 40 ~~y~~af~ai~~dp~~~llVa--~~~g~vVG~~~l~~~ 75 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGV--FRGEELVGFACLLVT 75 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEE--EECCEEEEEEEEEEe
Confidence 455667888888888899998 457899997776544
No 259
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=23.50 E-value=34 Score=19.31 Aligned_cols=22 Identities=5% Similarity=0.187 Sum_probs=16.8
Q ss_pred CCChHHHHHHhCcccccccccc
Q 031190 13 NIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 13 ~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
.++...|++.++++...+|.++
T Consensus 28 ~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 28 RVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp EE-HHHHHHHHTS-HHHHHHHH
T ss_pred eECHHHHHHHHCCCHHHhcccC
Confidence 5899999999999888877665
No 260
>PF06297 PET: PET Domain; InterPro: IPR010442 The PET domain is a ~110 amino acid motif in the N-terminal part of LIM domain proteins. The domain was described in Drosophila proteins involved in cell differentiation and is named after Prickle, Espinas and Testin. PET domain proteins contain about three zinc-binding LIM domains (see PDOC00382 from INTERPRO, IPR001781 from INTERPRO) and are found among metazoans. The PET domain has been suggested to play a role in protein-protein interactions with proteins involved in planar polarity signalling or organisation of the cytoskeleton []. Some proteins known to contain a PET domain: Mammalian testin protein (Q9UGI8 from SWISSPROT), which may function as a tumour suppressor. Mammalian LIM domain only protein 6 (LMO6/Prickle3, O43900 from SWISSPROT). Fruit fly prickle (A1Z6W3 from SWISSPROT) and espinas (Q9U1I1 from SWISSPROT) proteins encoded by the tissue polarity gene prickle (pk), involved in the control of orientation of bristles and hairs. Mammalian prickle-like proteins 1 (Q96MT3 from SWISSPROT) and 2 (Q7Z3G6 from SWISSPROT). ; GO: 0008270 zinc ion binding
Probab=23.45 E-value=63 Score=21.39 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=30.1
Q ss_pred CceEecCCCcHHHHHHHHHHcCCCeEEEEecCCCCc
Q 031190 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS 105 (164)
Q Consensus 70 ~~~~v~~~~tl~~a~~~~~~~~~~~ipVv~~d~~~~ 105 (164)
.+.|++++.+...+...|....-..+|++ +..|.
T Consensus 20 ~Y~WvPpgl~~~~v~~Ym~~LP~~~vP~~--gS~Ge 53 (106)
T PF06297_consen 20 EYAWVPPGLSPELVEQYMSCLPEEKVPVV--GSPGE 53 (106)
T ss_pred eeeecCCCCChHHHHHHHHhCCCcCCCCC--CCHHH
Confidence 48999999999999999999999999999 66653
No 261
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=23.14 E-value=34 Score=17.37 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=11.8
Q ss_pred CCChHHHHHHhCccccccc
Q 031190 13 NIVKSAVLQRIRLVNPMLR 31 (164)
Q Consensus 13 ~~~~~~i~~~~~~~~~~~~ 31 (164)
+++..+|++.+++++.+..
T Consensus 2 ~mtr~diA~~lG~t~ETVS 20 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVS 20 (32)
T ss_dssp E--HHHHHHHHTS-HHHHH
T ss_pred CcCHHHHHHHhCCcHHHHH
Confidence 4567888888888776543
No 262
>smart00455 RBD Raf-like Ras-binding domain.
Probab=22.66 E-value=1.5e+02 Score=17.79 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=18.2
Q ss_pred eEEEcCCCCHHHHHHH-HHhCCCCC
Q 031190 141 LITVSPDTKVLRAMQL-MTGHMLLP 164 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~-m~~~~~~~ 164 (164)
.+.+.++.++.|++.. +.++++.|
T Consensus 13 ~V~vrpg~tl~e~L~~~~~kr~l~~ 37 (70)
T smart00455 13 VVKVRPGKTVRDALAKALKKRGLNP 37 (70)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCH
Confidence 5668999999998876 47777654
No 263
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=22.32 E-value=48 Score=25.55 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=28.4
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCcccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
+.|.++++..+.++..+|++.++.++.++|-++
T Consensus 20 ~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL 52 (269)
T PRK09802 20 EQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDL 52 (269)
T ss_pred HHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHH
Confidence 457788889999999999999999999987554
No 264
>PHA00738 putative HTH transcription regulator
Probab=22.01 E-value=86 Score=20.84 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=22.3
Q ss_pred hHHHHHhhcCCCChHHHHHHhCccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLR 31 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 31 (164)
.|++++..+++....+|++.++++++++.
T Consensus 16 ~IL~lL~~~e~~~V~eLae~l~lSQptVS 44 (108)
T PHA00738 16 KILELIAENYILSASLISHTLLLSYTTVL 44 (108)
T ss_pred HHHHHHHHcCCccHHHHHHhhCCCHHHHH
Confidence 46677777778899999999988776653
No 265
>COG1356 tfx Transcriptional regulator [DNA replication, recombination and repair]
Probab=21.77 E-value=63 Score=22.19 Aligned_cols=69 Identities=7% Similarity=0.120 Sum_probs=43.0
Q ss_pred hcCCCChHHHHHHhCccccccccccccccccccchhhhhcCcccccHHHHhhhcCCCCCCCceEecCCCcHHHHHHHHHH
Q 031190 10 SHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89 (164)
Q Consensus 10 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dim~~~~~~~~~~~~~v~~~~tl~~a~~~~~~ 89 (164)
+...++...||+.|+.+|+.....-...+.....++- .-..+..++.+- -+.|...+++.++.+.+..
T Consensus 20 RekG~tQ~eIA~~L~TTraNvSaIEkrA~enIekarn-----TL~l~~~i~spv-------~i~v~aGe~~dei~e~l~k 87 (143)
T COG1356 20 REKGLTQSEIARILKTTRANVSAIEKRALENIEKARN-----TLLLWEQINSPV-------SITVKAGEDIDEIPERLFK 87 (143)
T ss_pred hhccccHHHHHHHHccchhhHHHHHHHHHHHHHHHHH-----HHHHHHHhCCCe-------EEEecCCCcHHHHHHHHHH
Confidence 4457999999999999877665444333332211110 012344566652 5778889999999988665
Q ss_pred c
Q 031190 90 H 90 (164)
Q Consensus 90 ~ 90 (164)
+
T Consensus 88 ~ 88 (143)
T COG1356 88 E 88 (143)
T ss_pred h
Confidence 4
No 266
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=21.73 E-value=67 Score=19.68 Aligned_cols=31 Identities=10% Similarity=0.326 Sum_probs=23.7
Q ss_pred HHHHHhhc-CCCChHHHHHHhCcccccccccc
Q 031190 4 AIQSFLSH-GNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 4 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
+.+.+... ++++..+|++.+++.+++....+
T Consensus 10 Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l 41 (91)
T smart00346 10 VLRALAEEPGGLTLAELAERLGLSKSTAHRLL 41 (91)
T ss_pred HHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 45555555 68999999999999888876544
No 267
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=21.59 E-value=1.5e+02 Score=18.36 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=17.6
Q ss_pred eEEEcCCCCHHHHHHHH-HhCCCCC
Q 031190 141 LITVSPDTKVLRAMQLM-TGHMLLP 164 (164)
Q Consensus 141 ~~~v~~~~~l~e~~~~m-~~~~~~~ 164 (164)
.+.|.+++++.++++.- ..+++.|
T Consensus 13 ~v~vrp~~tv~dvLe~aCk~~~ldp 37 (77)
T cd01818 13 LTYLRPGMSVEDFLESACKRKQLDP 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHhcCCCh
Confidence 45689999999998876 4555543
No 268
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=21.55 E-value=90 Score=19.62 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.7
Q ss_pred CCCCcEEEEEehHHHHHHHHHc
Q 031190 101 GEQKSVAGIITERDYLRKIIVQ 122 (164)
Q Consensus 101 d~~~~~vGivt~~dil~~~~~~ 122 (164)
+++|++.|-||..|+...+...
T Consensus 23 g~~gklfGSVt~~dIa~~l~~~ 44 (87)
T PF03948_consen 23 GENGKLFGSVTSKDIAKALKEQ 44 (87)
T ss_dssp SSCSSBSSEBSHHHHHHHHHHC
T ss_pred cCCcceecCcCHHHHHHHHHHh
Confidence 5679999999999998877655
No 269
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=20.84 E-value=1.1e+02 Score=19.32 Aligned_cols=29 Identities=10% Similarity=0.346 Sum_probs=16.4
Q ss_pred HHHcCCCeEEEEecCCCCc----EEEEEehHHHHH
Q 031190 87 MTQHNVGALVVVKPGEQKS----VAGIITERDYLR 117 (164)
Q Consensus 87 ~~~~~~~~ipVv~~d~~~~----~vGivt~~dil~ 117 (164)
+.-++.-.+.++ |.+|+ +.|+++..+++.
T Consensus 78 ~~v~gtPt~~~~--d~~G~~v~~~~G~~~~~~l~~ 110 (112)
T PF13098_consen 78 YGVNGTPTIVFL--DKDGKIVYRIPGYLSPEELLK 110 (112)
T ss_dssp TT--SSSEEEEC--TTTSCEEEEEESS--HHHHHH
T ss_pred cCCCccCEEEEE--cCCCCEEEEecCCCCHHHHHh
Confidence 333456666778 66665 577888888754
No 270
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=20.76 E-value=2.1e+02 Score=21.66 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=40.5
Q ss_pred HHHHHHHHHH-cCCCeEEEEecCCCCcEEEEEehHHHHHHHHHcCCCCcccccccccccCCCeEEEcCCCCHHHHH
Q 031190 80 VYDAVKSMTQ-HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAM 154 (164)
Q Consensus 80 l~~a~~~~~~-~~~~~ipVv~~d~~~~~vGivt~~dil~~~~~~~~~~~~~~v~~vm~~~~~~~~v~~~~~l~e~~ 154 (164)
+.++-+.+.. .++...||- |+|+.++++..+.. ..-++...+++..++...++=+-+.|++
T Consensus 49 l~~in~~L~~~TGw~~~pV~---------gli~~~~Ff~~LA~-----r~Fp~t~~iR~~~~~~YtpEPDifHe~~ 110 (221)
T cd00361 49 LEDVSEFLKALTGWTLVPVA---------GLISPRDFFALLAF-----RVFPVTQYIRHPEEPDYTPEPDIFHELF 110 (221)
T ss_pred HHHHHHHHHhhcCCEEEecC---------CcCCHHHHHHHHhc-----CCCceeeeecCcCCCCCCCCChhHHHHh
Confidence 4555555554 788888877 89999999987752 3456667777654555555555555543
No 271
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=20.62 E-value=73 Score=21.79 Aligned_cols=29 Identities=3% Similarity=0.069 Sum_probs=23.0
Q ss_pred HHhhcCCCChHHHHHHhCccccccccccc
Q 031190 7 SFLSHGNIVKSAVLQRIRLVNPMLRPVVS 35 (164)
Q Consensus 7 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 35 (164)
++..++|.+.++|++.++.++++....+.
T Consensus 36 LL~~~~~~tvdelae~lnr~rStv~rsl~ 64 (126)
T COG3355 36 LLEENGPLTVDELAEILNRSRSTVYRSLQ 64 (126)
T ss_pred HHhhcCCcCHHHHHHHHCccHHHHHHHHH
Confidence 44478999999999999998888665443
No 272
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=20.62 E-value=53 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.229 Sum_probs=28.8
Q ss_pred hhHHHHHhhcCCCChHHHHHHhCcccccccccc
Q 031190 2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV 34 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 34 (164)
+.|.++++..+.++..+|++.++.+..++|-++
T Consensus 8 ~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL 40 (252)
T PRK10906 8 DAIIELVKQQGYVSTEELVEHFSVSPQTIRRDL 40 (252)
T ss_pred HHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHH
Confidence 467888999999999999999999999987544
No 273
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=20.41 E-value=58 Score=18.21 Aligned_cols=29 Identities=10% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHHhhcCCCChHHHHHHhCcccccccc
Q 031190 4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRP 32 (164)
Q Consensus 4 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 32 (164)
+...+...++++..+|++.+++.++.+..
T Consensus 8 iL~~l~~~~~~~~~~la~~~~~~~~~~t~ 36 (59)
T PF01047_consen 8 ILRILYENGGITQSELAEKLGISRSTVTR 36 (59)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCCChhHHHH
Confidence 34556777889999999999997766543
No 274
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=20.29 E-value=87 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=25.2
Q ss_pred hHHHHHhhcCCCChHHHHHHhCcccccccc
Q 031190 3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRP 32 (164)
Q Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 32 (164)
.|+.++...+..+-.+|++.+++++++...
T Consensus 18 ~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~ 47 (164)
T PRK11169 18 NILNELQKDGRISNVELSKRVGLSPTPCLE 47 (164)
T ss_pred HHHHHhccCCCCCHHHHHHHHCcCHHHHHH
Confidence 577888899999999999999997776543
No 275
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=20.08 E-value=1.1e+02 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=22.7
Q ss_pred CCceEecCCCcHHHHHHHHHHcCCCeE
Q 031190 69 GSWLWCTTDDTVYDAVKSMTQHNVGAL 95 (164)
Q Consensus 69 ~~~~~v~~~~tl~~a~~~~~~~~~~~i 95 (164)
|+++.+..+.-+.+|+++...++.+.+
T Consensus 50 gd~v~ltsd~DL~eai~i~~~~~~~~v 76 (82)
T cd06407 50 EEWVLLTCDADLEECIDVYRSSGSHTI 76 (82)
T ss_pred CCeEEeecHHHHHHHHHHHHHCCCCeE
Confidence 479999999999999999888766554
Done!