BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031191
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
CA+C D+F +EAKQ+PC HLYH +C+LP L +SCP+CR +LP +P
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDP 273
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
CA+C DEF S+ KQ+PC H++H +C+LP L +SCP+CRF+LP +P
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDP 265
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
CA+CKD + K+LPC H YH +CI+P L ++SCP+CRFQL
Sbjct: 257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CKD+++L +QLPCNHL+H CI+P L SCP+CR L
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CKD++ L +QLPCNHL+H CI+P L SCP+CR L
Sbjct: 232 CPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CK+++++ +QLPCNHL+H++CI+P L +CP+CR L
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CK+++++ +QLPCNHL+H++CI+P L +CP+CR L
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CK++++L +QLPCNHL+H CI+P L SCP+CR L
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
C +C EF +QLPC HL+HS CILP L +SCPLCR +LP +P
Sbjct: 78 KCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSP 128
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CK+++++ E +QLPCNH +HS CI+P L +CP+CR L
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 26 THFLEHM-ESINPDSPNQ----LTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNS 80
++F EH E NP+ + L L + L +D +S FD A + S
Sbjct: 3 SYFDEHDCEPTNPEEQYRQNALLELARSLMQGLDIDSGSFDLSDWDQRLPPPAAKAVVQS 62
Query: 81 SSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPL 140
V + + ++ C +C EF +++PC HL+H+ CILP L+ +SCPL
Sbjct: 63 LPVVI----ISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPL 118
Query: 141 CRFQLPMIN 149
CR +LP N
Sbjct: 119 CRLELPTDN 127
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
C +C EF +QLPC HL+HS CILP L +SCPLCR +LP +P
Sbjct: 78 KCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSP 128
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CK+++++ +QLPCNHL+H++CI+P L +CP+CR L
Sbjct: 228 CPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C +CK+++++ + +QLPCNH +HS CI+P L +CP+CR L
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 92 ISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
IS + + C +C EF ++PC+HL+HS CILP LS +SCPLCR +LP
Sbjct: 79 ISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 26 THFLEHMESINPDSPNQ-------LTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLD 78
++F EH P P Q L L + L +DF L + + + + ++
Sbjct: 3 SYFDEH--DCEPSDPEQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVE 60
Query: 79 NSSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSC 138
N +R + E+ C +C EF A ++PC+HL+HS CILP LS +SC
Sbjct: 61 NLPRTVIRGSQAELK-------CPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSC 113
Query: 139 PLCRFQLP 146
PLCR++LP
Sbjct: 114 PLCRYELP 121
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 36 NPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISES 95
+P + L L + L +DF L + + + + ++N +R + E+
Sbjct: 18 DPRTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTAVENLPRTVIRGSQAELK-- 75
Query: 96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
C +C EF A ++PC+HL+HS CILP LS +SCPLCR +LP
Sbjct: 76 -----CPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 121
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
++ C ICK+ + + ++LPC H +H C+ P L +SCP+CR +LP
Sbjct: 226 AEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELP 275
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 92 ISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146
I S ++ C +C EF ++PC+HL+HS CILP LS +SCPLCR +LP
Sbjct: 79 IRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELP 133
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 36 NPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNS-----SSVGMRMNSV 90
+PDSP Q++ Q DID +++ ++ E + + + GL + + S+
Sbjct: 133 DPDSP-QVSWQD----DIDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSI 187
Query: 91 EISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
S + E C IC+ ++ + LPC H+YHSECI LS CP+C ++
Sbjct: 188 -FSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150
C++CK+ + + LPC H +H ECIL L +SCPLCR++L +P
Sbjct: 69 ECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDP 119
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRF 143
E+CA+C D F + LPC H +H +C+ P L Q +CPLC+F
Sbjct: 323 ETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKF 367
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRF 143
E+CA+C D F + LPC H +H +C+ P L Q +CPLC+F
Sbjct: 325 ETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKF 369
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
+C IC++E ++ S K+LPC+H++H+ C+ Q +CP CR
Sbjct: 291 TCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 86 RMNSVEISESLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
R+ E + E+CA+C + + + LPC H++H CI P L +CP+C+ +
Sbjct: 249 RVKKGEKGIDIDAENCAVCIENYKTKDLVRILPCKHIFHRLCIDPWLIEHRTCPMCKLDV 308
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL---PMINPS 151
S C IC+++ HS K+LPC H++H+ C+ Q +CP CR + P +N +
Sbjct: 285 SDNICIICREDMVNHS--KKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNST 340
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 67/149 (44%), Gaps = 29/149 (19%)
Query: 2 SVSLVFSTTVTTLPLQEVLCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFD 61
S + VF+ VT L +L + ++ H NPDS +
Sbjct: 45 SKTTVFAVLVTLFFLTGLL-----SVYIRHCARSNPDSSTRY------------------ 81
Query: 62 YGCEGNDQSNSVASGLDNS---SSVGMRMNSVEISESLSQE-SCAICKDEFSLHSEAKQL 117
+ ND S S GLDN+ S +SV+ S+ S++ CAIC +E H + L
Sbjct: 82 FRNRANDGS-SRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLL 140
Query: 118 P-CNHLYHSECILPCLSHQSSCPLCRFQL 145
P CNHL+H +CI L ++CP+CR L
Sbjct: 141 PICNHLFHIDCIDTWLYSHATCPVCRSNL 169
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
+C IC++E ++ + K+LPC+H++H+ C+ Q +CP CR
Sbjct: 291 TCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 72 SVASGLDNSSSVGMRMNSVEISESLSQE--SCAICKDEFSLHSEAKQLPCNHLYHSECIL 129
S+A SSS ++S S+ +++ +C++C ++ ++ + LPC H +H+ CI
Sbjct: 180 SLAKQASTSSSAEKMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCID 239
Query: 130 PCLSHQSSCPLCRFQ 144
P L Q +CP+C+F+
Sbjct: 240 PWLRQQGTCPVCKFR 254
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
C IC++E + + AK+LPCNH++HS C+ Q +CP CR
Sbjct: 291 CIICREE--MVTGAKKLPCNHIFHSSCLRSWFQRQQTCPTCR 330
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C IC++E + + AK+LPCNH++H+ C+ Q +CP CR +
Sbjct: 291 CIICREE--MVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 333
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
+ E+CA+C + F + + LPC H++H CI P L +CP+C+ +
Sbjct: 264 VDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDV 313
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
C IC++E + + AK+LPCNH++H+ C+ Q +CP CR +
Sbjct: 291 CIICREE--MVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDV 333
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145
+ E+CA+C + F + + LPC H++H CI P L +CP+C+ +
Sbjct: 260 VDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDV 309
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
C IC++E + S AK+LPCNH++H+ C+ Q +CP CR
Sbjct: 285 CIICREE--MVSGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
++C++C E++ ++ ++LPC+H YH CI LS S+CP+CR
Sbjct: 568 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
++C++C E++ ++ ++LPC+H YH CI LS S+CP+CR
Sbjct: 544 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 79 NSSSVGMRMNSVEISESLSQES---CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ 135
NS S G R S ++LS S CAIC +++ E + +PC H +H +C+ P L
Sbjct: 265 NSKSKGRREGSCGALDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQH 324
Query: 136 SSCPLCRFQL 145
+CP CR +
Sbjct: 325 HTCPHCRHNI 334
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
++C++C E++ ++ ++LPC+H YH CI LS S+CP+CR
Sbjct: 583 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 626
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
++C++C E++ ++ ++LPC+H YH CI LS S+CP+CR
Sbjct: 566 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 609
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 43 LTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISES--LSQES 100
+ L++ TT++D++SL G +N + L S + + V ES +
Sbjct: 51 IYLRRNSTTNVDWSSLGMRGGTFVPTNNNLSTAELGLSKDIREMLPVVIYKESFIVKDSQ 110
Query: 101 CAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL 145
C++C ++ + +Q+P C H +H ECI L+ ++CPLCR L
Sbjct: 111 CSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL 156
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
++C++C E++ ++ ++LPC+H YH CI LS S+CP+CR
Sbjct: 701 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 744
>sp|O64762|ATL38_ARATH RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2
SV=1
Length = 302
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 20 LCPQWQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDN 79
+C +W + ESINP TD D S G D++ + N
Sbjct: 33 VCFRWTSRQFYSQESINP------------FTDSDVESRTSITAVRGLDEA------IIN 74
Query: 80 SSSVGMRMNSVEISESLSQESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSC 138
S + E + CA+C EF H + +P C H++H++C+ LS S+C
Sbjct: 75 SFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTC 134
Query: 139 PLCRFQL 145
PLCR L
Sbjct: 135 PLCRVDL 141
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 28 FLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRM 87
FL + S+ P SP T+ ++ D+D + ++ E + ++A L ++ G+
Sbjct: 279 FLPYFLSMLPMSPT--TVGPTISLDLDVDDVEM----ENYEALLNLAERLGDAKPRGLTK 332
Query: 88 NSVEISESLS---------QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSC 138
+E S Q C +C +F + + LPCNH +H++C+ L +C
Sbjct: 333 ADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTC 392
Query: 139 PLCR 142
P+CR
Sbjct: 393 PICR 396
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142
C IC++E + + AK+LPCNH++H+ C+ Q +CP CR
Sbjct: 285 CIICREE--MVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCR 142
+ CAIC DE+ + + LPC H YHS C+ P L+ + +CP+C+
Sbjct: 228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 28 FLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRM 87
FL + S+ P SP T+ ++ D+D + ++ E + ++A L ++ G+
Sbjct: 222 FLPYFLSMLPMSPT--TVGPTISLDLDVDDVEM----ENYEALLNLAERLGDAKPRGLTK 275
Query: 88 NSVEISESLS---------QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSC 138
+E S Q C +C +F + + LPCNH +H++C+ L +C
Sbjct: 276 ADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTC 335
Query: 139 PLCR 142
P+CR
Sbjct: 336 PICR 339
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCR 142
+ CAIC DE+ + + LPC H YHS C+ P L+ + +CP+C+
Sbjct: 228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 79 NSSSVGMRMNSV-EISESLSQE---SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH 134
N + ++NS+ EI S QE CAIC EF+ + A+ PCNH +H+ C+ L
Sbjct: 521 NRRTAVKKINSLPEIKGSRLQEINDVCAICYHEFT--TSARITPCNHYFHALCLRKWLYI 578
Query: 135 QSSCPLC 141
Q +CP+C
Sbjct: 579 QDTCPMC 585
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCR 142
+ CAIC DE+ + + LPC H YHS C+ P L+ + +CP+C+
Sbjct: 228 DVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICK 272
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.127 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,144,560
Number of Sequences: 539616
Number of extensions: 2066867
Number of successful extensions: 6169
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 5785
Number of HSP's gapped (non-prelim): 579
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)