Query 031191
Match_columns 164
No_of_seqs 157 out of 1615
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 10:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 8.4E-18 1.8E-22 137.7 5.3 72 81-152 209-284 (348)
2 PF13639 zf-RING_2: Ring finge 99.7 1.2E-17 2.7E-22 98.8 1.5 44 99-142 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.5 6.1E-14 1.3E-18 91.7 3.7 45 98-142 19-73 (73)
4 COG5540 RING-finger-containing 99.5 3.7E-14 8E-19 113.3 3.2 52 96-147 321-373 (374)
5 PHA02929 N1R/p28-like protein; 99.4 1.7E-13 3.7E-18 107.9 4.2 65 82-146 153-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.3 6.1E-13 1.3E-17 109.0 3.7 51 98-148 287-347 (491)
7 PF13920 zf-C3HC4_3: Zinc fing 99.2 6.9E-12 1.5E-16 76.0 3.4 45 99-146 3-48 (50)
8 KOG0823 Predicted E3 ubiquitin 99.2 5.4E-12 1.2E-16 97.7 2.6 49 98-149 47-98 (230)
9 KOG0317 Predicted E3 ubiquitin 99.2 5.6E-12 1.2E-16 100.3 2.4 49 99-150 240-288 (293)
10 PLN03208 E3 ubiquitin-protein 99.2 9.1E-12 2E-16 94.7 3.3 50 98-150 18-83 (193)
11 cd00162 RING RING-finger (Real 99.2 1.7E-11 3.7E-16 71.3 3.2 44 100-145 1-45 (45)
12 PF13923 zf-C3HC4_2: Zinc fing 99.2 1.2E-11 2.5E-16 71.2 2.4 38 101-141 1-39 (39)
13 PF15227 zf-C3HC4_4: zinc fing 99.1 6.5E-11 1.4E-15 69.2 2.8 38 101-141 1-42 (42)
14 PF14634 zf-RING_5: zinc-RING 99.1 1.1E-10 2.5E-15 68.8 3.1 44 100-143 1-44 (44)
15 KOG0802 E3 ubiquitin ligase [P 99.0 6E-11 1.3E-15 103.9 1.7 50 98-147 291-342 (543)
16 PF12861 zf-Apc11: Anaphase-pr 99.0 2E-10 4.4E-15 76.4 3.1 50 98-147 21-83 (85)
17 PHA02926 zinc finger-like prot 99.0 1.8E-10 4E-15 88.9 2.8 49 98-146 170-230 (242)
18 PF00097 zf-C3HC4: Zinc finger 99.0 2.3E-10 4.9E-15 66.2 2.4 38 101-141 1-41 (41)
19 smart00184 RING Ring finger. E 99.0 3.5E-10 7.7E-15 63.5 2.9 38 101-141 1-39 (39)
20 KOG0320 Predicted E3 ubiquitin 99.0 5.8E-10 1.3E-14 83.3 3.8 50 99-149 132-181 (187)
21 smart00504 Ubox Modified RING 99.0 6.1E-10 1.3E-14 70.1 3.4 47 100-149 3-49 (63)
22 COG5194 APC11 Component of SCF 98.9 1.6E-09 3.4E-14 70.7 2.9 29 118-146 53-81 (88)
23 TIGR00599 rad18 DNA repair pro 98.8 3.1E-09 6.6E-14 89.4 4.4 50 96-148 24-73 (397)
24 COG5574 PEX10 RING-finger-cont 98.7 9.8E-09 2.1E-13 81.1 1.9 50 98-150 215-266 (271)
25 smart00744 RINGv The RING-vari 98.6 2.7E-08 5.9E-13 60.0 2.9 42 100-142 1-49 (49)
26 KOG1493 Anaphase-promoting com 98.6 4.5E-09 9.7E-14 68.0 -0.7 48 99-146 21-81 (84)
27 KOG2164 Predicted E3 ubiquitin 98.6 2.5E-08 5.4E-13 85.1 3.4 54 98-154 186-244 (513)
28 KOG1734 Predicted RING-contain 98.6 1.6E-08 3.5E-13 80.1 1.0 51 98-148 224-283 (328)
29 PF13445 zf-RING_UBOX: RING-ty 98.5 5.3E-08 1.1E-12 57.0 2.4 38 101-139 1-43 (43)
30 KOG0828 Predicted E3 ubiquitin 98.5 2.5E-08 5.4E-13 84.7 1.3 49 99-147 572-635 (636)
31 KOG0804 Cytoplasmic Zn-finger 98.5 7.6E-08 1.6E-12 81.0 3.8 58 99-158 176-234 (493)
32 KOG2930 SCF ubiquitin ligase, 98.4 8.5E-08 1.8E-12 65.6 1.9 47 99-145 47-107 (114)
33 PF04564 U-box: U-box domain; 98.4 1.5E-07 3.2E-12 61.3 2.8 49 99-150 5-54 (73)
34 KOG0287 Postreplication repair 98.4 1.4E-07 3E-12 77.1 1.5 48 99-149 24-71 (442)
35 COG5432 RAD18 RING-finger-cont 98.3 3E-07 6.5E-12 73.8 2.4 46 99-147 26-71 (391)
36 PF11793 FANCL_C: FANCL C-term 98.3 1.5E-07 3.2E-12 60.9 -0.3 48 99-146 3-66 (70)
37 TIGR00570 cdk7 CDK-activating 98.2 9.1E-07 2E-11 72.1 3.9 51 99-149 4-57 (309)
38 KOG2177 Predicted E3 ubiquitin 98.2 4.3E-07 9.4E-12 71.8 1.4 43 98-143 13-55 (386)
39 KOG1785 Tyrosine kinase negati 98.2 4.4E-07 9.6E-12 75.6 1.1 115 24-149 294-419 (563)
40 KOG0824 Predicted E3 ubiquitin 98.2 6.5E-07 1.4E-11 72.1 1.9 51 99-152 8-59 (324)
41 COG5219 Uncharacterized conser 98.2 3.8E-07 8.2E-12 82.7 0.2 48 99-146 1470-1523(1525)
42 KOG4265 Predicted E3 ubiquitin 98.1 1.4E-06 2.9E-11 71.7 2.9 48 98-148 290-338 (349)
43 KOG0311 Predicted E3 ubiquitin 98.1 4.4E-07 9.5E-12 74.5 -1.2 50 97-149 42-93 (381)
44 KOG0825 PHD Zn-finger protein 98.0 8.1E-07 1.8E-11 79.2 -0.6 50 99-148 124-173 (1134)
45 KOG0827 Predicted E3 ubiquitin 98.0 2.1E-06 4.6E-11 71.3 1.8 47 99-145 5-55 (465)
46 PF14835 zf-RING_6: zf-RING of 98.0 1.7E-06 3.7E-11 54.5 0.6 42 99-145 8-50 (65)
47 KOG4445 Uncharacterized conser 98.0 2E-06 4.2E-11 69.4 0.3 53 96-148 113-188 (368)
48 KOG1039 Predicted E3 ubiquitin 97.9 4.6E-06 9.9E-11 69.2 1.8 49 98-146 161-221 (344)
49 KOG1645 RING-finger-containing 97.8 1.1E-05 2.4E-10 67.5 2.6 46 99-144 5-54 (463)
50 KOG0978 E3 ubiquitin ligase in 97.6 1.4E-05 3.1E-10 71.3 0.5 48 99-149 644-692 (698)
51 KOG4159 Predicted E3 ubiquitin 97.6 3.3E-05 7.1E-10 65.3 2.3 48 98-148 84-131 (398)
52 KOG4172 Predicted E3 ubiquitin 97.5 1.5E-05 3.3E-10 48.5 -0.8 46 99-147 8-55 (62)
53 PF11789 zf-Nse: Zinc-finger o 97.5 8.5E-05 1.8E-09 46.1 2.4 40 98-140 11-53 (57)
54 KOG0801 Predicted E3 ubiquitin 97.4 4E-05 8.7E-10 56.8 0.2 27 99-125 178-204 (205)
55 PF12906 RINGv: RING-variant d 97.4 0.00012 2.6E-09 43.5 2.1 40 101-141 1-47 (47)
56 KOG1941 Acetylcholine receptor 97.2 9.8E-05 2.1E-09 61.7 0.6 45 99-143 366-413 (518)
57 KOG1002 Nucleotide excision re 97.2 0.00017 3.8E-09 62.4 2.0 53 97-152 535-592 (791)
58 KOG0297 TNF receptor-associate 97.2 0.00017 3.7E-09 61.1 1.8 50 99-151 22-72 (391)
59 PF05883 Baculo_RING: Baculovi 97.2 0.00019 4.1E-09 51.8 1.7 35 99-133 27-67 (134)
60 COG5152 Uncharacterized conser 97.1 0.00022 4.7E-09 54.7 1.6 44 99-145 197-240 (259)
61 PF14570 zf-RING_4: RING/Ubox 97.1 0.00039 8.5E-09 41.4 2.1 44 101-145 1-47 (48)
62 KOG3970 Predicted E3 ubiquitin 97.1 0.00042 9E-09 54.1 2.6 50 99-149 51-108 (299)
63 KOG2660 Locus-specific chromos 97.0 0.0001 2.2E-09 60.2 -0.8 50 96-148 13-63 (331)
64 KOG1428 Inhibitor of type V ad 97.0 0.00044 9.4E-09 65.9 2.8 51 97-147 3485-3545(3738)
65 PHA02825 LAP/PHD finger-like p 96.7 0.0015 3.2E-08 48.4 3.0 59 98-160 8-74 (162)
66 KOG1952 Transcription factor N 96.7 0.00089 1.9E-08 60.8 2.1 46 99-144 192-245 (950)
67 KOG2879 Predicted E3 ubiquitin 96.6 0.0022 4.8E-08 51.4 3.8 51 96-149 237-290 (298)
68 PHA02862 5L protein; Provision 96.6 0.0013 2.7E-08 48.1 2.1 47 99-149 3-56 (156)
69 PHA03096 p28-like protein; Pro 96.6 0.0011 2.3E-08 54.0 1.6 47 99-145 179-236 (284)
70 PF10367 Vps39_2: Vacuolar sor 96.6 0.00089 1.9E-08 45.9 1.0 30 99-129 79-108 (109)
71 KOG1813 Predicted E3 ubiquitin 96.4 0.0011 2.4E-08 53.6 0.8 44 99-145 242-285 (313)
72 COG5222 Uncharacterized conser 96.3 0.0019 4.2E-08 52.4 1.8 47 99-148 275-324 (427)
73 PF14447 Prok-RING_4: Prokaryo 96.2 0.003 6.5E-08 38.6 1.7 37 111-149 17-53 (55)
74 PF08746 zf-RING-like: RING-li 96.2 0.002 4.3E-08 37.6 0.8 41 101-141 1-43 (43)
75 KOG4692 Predicted E3 ubiquitin 96.1 0.0036 7.7E-08 52.0 2.3 47 98-147 422-468 (489)
76 KOG1571 Predicted E3 ubiquitin 96.0 0.0032 6.9E-08 52.2 1.5 42 99-146 306-347 (355)
77 KOG1814 Predicted E3 ubiquitin 96.0 0.0032 7E-08 53.1 1.4 35 99-133 185-219 (445)
78 KOG4275 Predicted E3 ubiquitin 96.0 0.0017 3.7E-08 52.5 -0.2 40 99-145 301-341 (350)
79 KOG3039 Uncharacterized conser 95.9 0.0085 1.8E-07 47.5 3.4 52 99-150 222-274 (303)
80 KOG4739 Uncharacterized protei 95.8 0.0038 8.2E-08 49.2 1.2 49 100-151 5-53 (233)
81 KOG4185 Predicted E3 ubiquitin 95.8 0.0073 1.6E-07 49.0 2.8 47 99-145 4-54 (296)
82 PF14369 zf-RING_3: zinc-finge 95.6 0.0054 1.2E-07 34.1 0.8 19 14-32 17-35 (35)
83 KOG3268 Predicted E3 ubiquitin 95.0 0.015 3.2E-07 44.1 1.8 49 99-147 166-229 (234)
84 PF07800 DUF1644: Protein of u 95.0 0.019 4.1E-07 42.6 2.4 52 98-152 2-97 (162)
85 COG5236 Uncharacterized conser 94.9 0.029 6.3E-07 46.6 3.6 44 99-145 62-107 (493)
86 PF10272 Tmpp129: Putative tra 94.9 0.041 8.8E-07 46.2 4.4 68 82-149 254-354 (358)
87 KOG0827 Predicted E3 ubiquitin 94.9 0.0012 2.7E-08 55.2 -4.5 51 99-149 197-248 (465)
88 KOG0826 Predicted E3 ubiquitin 94.3 0.032 7E-07 45.9 2.5 44 99-145 301-345 (357)
89 PF14446 Prok-RING_1: Prokaryo 94.0 0.051 1.1E-06 33.2 2.4 32 99-130 6-38 (54)
90 PF03854 zf-P11: P-11 zinc fin 94.0 0.03 6.6E-07 33.1 1.2 43 101-148 5-48 (50)
91 PF04641 Rtf2: Rtf2 RING-finge 93.9 0.063 1.4E-06 43.1 3.5 51 98-149 113-164 (260)
92 KOG1001 Helicase-like transcri 93.8 0.017 3.6E-07 52.3 -0.2 50 99-152 455-506 (674)
93 KOG1940 Zn-finger protein [Gen 93.6 0.041 9E-07 44.5 1.8 49 95-143 155-204 (276)
94 COG5175 MOT2 Transcriptional r 93.3 0.06 1.3E-06 44.7 2.3 54 97-150 13-68 (480)
95 KOG2932 E3 ubiquitin ligase in 93.1 0.038 8.2E-07 45.3 0.9 32 112-145 102-133 (389)
96 KOG1609 Protein involved in mR 92.6 0.051 1.1E-06 44.1 1.0 52 98-149 78-137 (323)
97 KOG2034 Vacuolar sorting prote 92.4 0.061 1.3E-06 49.5 1.4 34 98-132 817-850 (911)
98 KOG2114 Vacuolar assembly/sort 92.3 0.059 1.3E-06 49.4 1.1 42 99-145 841-882 (933)
99 KOG3002 Zn finger protein [Gen 91.8 0.1 2.3E-06 42.8 1.9 41 99-146 49-91 (299)
100 KOG1812 Predicted E3 ubiquitin 89.8 0.12 2.7E-06 43.8 0.7 37 97-133 145-182 (384)
101 KOG2817 Predicted E3 ubiquitin 89.5 0.33 7.2E-06 41.0 2.9 45 99-143 335-382 (394)
102 KOG1100 Predicted E3 ubiquitin 89.2 0.18 3.9E-06 39.2 1.1 40 100-146 160-200 (207)
103 KOG0298 DEAD box-containing he 89.2 0.1 2.3E-06 49.8 -0.3 44 99-144 1154-1197(1394)
104 PF05290 Baculo_IE-1: Baculovi 88.7 0.35 7.6E-06 35.0 2.2 52 98-149 80-135 (140)
105 KOG3800 Predicted E3 ubiquitin 87.6 0.49 1.1E-05 38.5 2.6 49 100-148 2-53 (300)
106 KOG4362 Transcriptional regula 87.5 0.14 3.1E-06 46.1 -0.5 49 99-150 22-73 (684)
107 KOG0309 Conserved WD40 repeat- 87.3 0.36 7.9E-06 44.1 1.9 27 114-140 1043-1069(1081)
108 KOG3899 Uncharacterized conser 87.3 0.24 5.3E-06 40.4 0.8 32 119-150 325-369 (381)
109 COG5220 TFB3 Cdk activating ki 86.9 0.3 6.5E-06 38.8 1.1 45 99-143 11-61 (314)
110 KOG3053 Uncharacterized conser 85.7 0.36 7.8E-06 38.7 0.9 48 98-145 20-81 (293)
111 KOG0269 WD40 repeat-containing 83.0 1.1 2.4E-05 41.0 2.9 39 99-140 780-820 (839)
112 KOG0802 E3 ubiquitin ligase [P 81.5 0.78 1.7E-05 40.6 1.4 53 99-158 480-532 (543)
113 KOG3005 GIY-YIG type nuclease 80.7 0.64 1.4E-05 37.4 0.6 46 99-144 183-241 (276)
114 KOG0825 PHD Zn-finger protein 80.7 0.83 1.8E-05 42.1 1.3 51 99-149 97-157 (1134)
115 COG5183 SSM4 Protein involved 80.1 1.4 3E-05 40.8 2.5 49 99-148 13-68 (1175)
116 KOG4718 Non-SMC (structural ma 79.6 0.96 2.1E-05 35.3 1.2 43 99-143 182-224 (235)
117 PF13901 DUF4206: Domain of un 78.8 1.3 2.7E-05 34.3 1.7 38 99-142 153-196 (202)
118 KOG1815 Predicted E3 ubiquitin 78.3 1 2.2E-05 38.9 1.1 35 97-133 69-103 (444)
119 PF02891 zf-MIZ: MIZ/SP-RING z 77.9 2.3 5E-05 25.3 2.3 41 100-144 4-50 (50)
120 KOG4367 Predicted Zn-finger pr 76.2 1.3 2.8E-05 38.2 1.1 32 98-132 4-35 (699)
121 PF07975 C1_4: TFIIH C1-like d 75.9 2.5 5.4E-05 25.5 2.0 41 101-142 2-50 (51)
122 smart00249 PHD PHD zinc finger 75.9 1.5 3.2E-05 24.5 1.0 31 100-130 1-31 (47)
123 KOG1829 Uncharacterized conser 75.0 0.92 2E-05 40.5 -0.1 40 99-141 512-556 (580)
124 PF06906 DUF1272: Protein of u 74.6 6.9 0.00015 24.0 3.7 48 99-148 6-54 (57)
125 KOG2066 Vacuolar assembly/sort 73.9 1.3 2.8E-05 40.7 0.6 42 99-141 785-830 (846)
126 smart00132 LIM Zinc-binding do 72.9 4.3 9.3E-05 21.7 2.4 36 101-145 2-37 (39)
127 KOG1812 Predicted E3 ubiquitin 72.4 1.9 4.2E-05 36.6 1.2 43 99-141 307-351 (384)
128 TIGR00622 ssl1 transcription f 71.3 4.9 0.00011 28.2 2.9 44 99-142 56-110 (112)
129 KOG3161 Predicted E3 ubiquitin 70.6 1.5 3.2E-05 39.6 0.2 42 99-143 12-54 (861)
130 PF00628 PHD: PHD-finger; Int 70.4 1.8 4E-05 25.3 0.5 42 101-142 2-49 (51)
131 PF10571 UPF0547: Uncharacteri 69.3 1.7 3.7E-05 22.4 0.2 16 13-28 9-24 (26)
132 KOG2807 RNA polymerase II tran 67.2 3.9 8.4E-05 34.0 1.9 44 99-142 331-374 (378)
133 KOG3039 Uncharacterized conser 65.9 4 8.6E-05 32.7 1.7 31 99-132 44-74 (303)
134 PF01363 FYVE: FYVE zinc finge 64.1 3.6 7.7E-05 25.7 0.9 35 98-132 9-44 (69)
135 PF06844 DUF1244: Protein of u 61.0 4.8 0.0001 25.5 1.1 12 122-133 11-22 (68)
136 KOG2068 MOT2 transcription fac 60.6 7.6 0.00017 32.3 2.5 48 99-146 250-298 (327)
137 PF00412 LIM: LIM domain; Int 60.5 8.4 0.00018 22.8 2.1 40 101-149 1-40 (58)
138 KOG3113 Uncharacterized conser 57.8 11 0.00023 30.4 2.8 49 99-149 112-161 (293)
139 KOG1729 FYVE finger containing 57.4 2.3 5E-05 34.8 -1.0 37 99-135 215-251 (288)
140 KOG3579 Predicted E3 ubiquitin 57.3 4.6 0.0001 33.0 0.7 36 99-135 269-306 (352)
141 PF13832 zf-HC5HC2H_2: PHD-zin 56.6 11 0.00024 25.6 2.5 32 98-131 55-88 (110)
142 PF04805 Pox_E10: E10-like pro 55.6 5.1 0.00011 25.5 0.5 25 18-42 15-39 (70)
143 cd00065 FYVE FYVE domain; Zinc 54.9 9.2 0.0002 22.7 1.6 34 99-132 3-37 (57)
144 KOG2071 mRNA cleavage and poly 54.8 6.7 0.00014 35.0 1.3 36 96-131 511-556 (579)
145 COG5109 Uncharacterized conser 53.6 12 0.00026 31.2 2.5 45 99-143 337-384 (396)
146 PRK05978 hypothetical protein; 52.9 11 0.00025 27.7 2.1 30 120-154 42-71 (148)
147 PF13719 zinc_ribbon_5: zinc-r 52.8 7.3 0.00016 21.5 0.8 25 100-124 4-36 (37)
148 KOG4185 Predicted E3 ubiquitin 50.1 2.3 4.9E-05 34.4 -2.2 46 99-144 208-265 (296)
149 PF14569 zf-UDP: Zinc-binding 49.4 19 0.00041 23.6 2.5 49 98-146 9-62 (80)
150 smart00064 FYVE Protein presen 48.9 16 0.00034 22.6 2.1 34 99-132 11-45 (68)
151 KOG0956 PHD finger protein AF1 48.1 7.3 0.00016 35.6 0.5 48 98-145 117-181 (900)
152 PF07649 C1_3: C1-like domain; 47.6 11 0.00024 19.6 1.0 29 100-128 2-30 (30)
153 PF04423 Rad50_zn_hook: Rad50 46.1 7 0.00015 23.4 0.1 14 135-148 20-33 (54)
154 PF05715 zf-piccolo: Piccolo Z 45.8 15 0.00033 22.8 1.5 12 135-146 2-13 (61)
155 smart00647 IBR In Between Ring 44.8 6.4 0.00014 23.7 -0.2 20 112-131 38-58 (64)
156 KOG2231 Predicted E3 ubiquitin 42.3 17 0.00038 33.1 2.0 45 100-147 2-53 (669)
157 PF13717 zinc_ribbon_4: zinc-r 41.4 12 0.00025 20.6 0.5 25 100-124 4-36 (36)
158 PF13453 zf-TFIIB: Transcripti 40.9 11 0.00025 21.1 0.4 20 138-157 2-21 (41)
159 PF13913 zf-C2HC_2: zinc-finge 40.1 11 0.00023 19.0 0.2 13 18-30 2-14 (25)
160 PF07191 zinc-ribbons_6: zinc- 39.9 3.2 6.9E-05 26.7 -2.2 40 99-146 2-41 (70)
161 COG4338 Uncharacterized protei 39.7 8.1 0.00017 23.0 -0.3 13 16-28 10-22 (54)
162 KOG0824 Predicted E3 ubiquitin 39.6 9.1 0.0002 31.5 -0.1 47 99-148 106-153 (324)
163 PRK00432 30S ribosomal protein 39.5 23 0.00049 21.1 1.6 29 2-30 4-32 (50)
164 KOG4602 Nanos and related prot 39.4 10 0.00022 30.6 0.1 19 10-28 260-278 (318)
165 PF10497 zf-4CXXC_R1: Zinc-fin 39.4 25 0.00054 24.3 2.0 24 120-143 37-69 (105)
166 cd00350 rubredoxin_like Rubred 39.1 19 0.0004 19.3 1.1 10 134-143 16-25 (33)
167 PF06750 DiS_P_DiS: Bacterial 37.7 15 0.00032 24.7 0.7 37 99-147 34-70 (92)
168 PF07282 OrfB_Zn_ribbon: Putat 37.1 73 0.0016 19.6 3.8 45 86-130 16-63 (69)
169 PHA03005 sulfhydryl oxidase; P 37.1 17 0.00037 24.6 0.9 27 16-42 38-64 (96)
170 PF14311 DUF4379: Domain of un 37.0 22 0.00048 21.2 1.3 22 119-141 34-55 (55)
171 PRK11827 hypothetical protein; 36.8 13 0.00027 23.2 0.2 19 130-148 3-21 (60)
172 KOG1815 Predicted E3 ubiquitin 36.5 11 0.00024 32.6 -0.2 36 99-134 227-267 (444)
173 PLN02189 cellulose synthase 36.3 40 0.00087 32.4 3.4 48 99-146 35-87 (1040)
174 KOG2113 Predicted RNA binding 35.9 33 0.00072 28.6 2.5 41 99-144 344-385 (394)
175 COG4847 Uncharacterized protei 35.2 39 0.00084 23.1 2.3 34 99-133 7-40 (103)
176 PHA00626 hypothetical protein 35.0 14 0.00031 22.7 0.2 19 15-33 20-38 (59)
177 COG3492 Uncharacterized protei 34.0 17 0.00038 24.6 0.5 12 122-133 42-53 (104)
178 PF13465 zf-H2C2_2: Zinc-finge 33.9 6 0.00013 20.0 -1.4 12 17-28 13-24 (26)
179 PF00096 zf-C2H2: Zinc finger, 33.5 5.5 0.00012 19.0 -1.5 9 20-28 2-10 (23)
180 PRK11088 rrmA 23S rRNA methylt 33.2 29 0.00063 27.6 1.8 26 99-124 3-28 (272)
181 PF05605 zf-Di19: Drought indu 32.5 25 0.00055 20.8 1.0 12 17-28 30-41 (54)
182 PF09889 DUF2116: Uncharacteri 32.5 29 0.00063 21.5 1.3 16 134-149 2-17 (59)
183 PF13771 zf-HC5HC2H: PHD-like 32.1 21 0.00045 23.3 0.7 30 99-130 37-68 (90)
184 KOG2041 WD40 repeat protein [G 32.1 33 0.00073 31.9 2.1 43 99-145 1132-1184(1189)
185 PF01396 zf-C4_Topoisom: Topoi 31.9 21 0.00046 19.9 0.6 25 136-160 2-26 (39)
186 PF04216 FdhE: Protein involve 31.7 4.9 0.00011 32.6 -2.9 45 99-143 173-219 (290)
187 PLN02436 cellulose synthase A 31.4 46 0.001 32.2 3.0 48 99-146 37-89 (1094)
188 PF09538 FYDLN_acid: Protein o 31.0 41 0.0009 23.4 2.0 13 136-148 27-39 (108)
189 PF10013 DUF2256: Uncharacteri 30.9 23 0.0005 20.4 0.6 14 15-28 5-18 (42)
190 PF05741 zf-nanos: Nanos RNA b 30.8 18 0.00038 22.1 0.1 17 11-27 26-42 (55)
191 PF09723 Zn-ribbon_8: Zinc rib 30.8 62 0.0013 18.2 2.5 20 7-26 15-34 (42)
192 KOG1512 PHD Zn-finger protein 30.5 21 0.00045 29.3 0.5 31 99-129 315-345 (381)
193 COG4068 Uncharacterized protei 30.4 33 0.00071 21.3 1.3 17 134-150 7-23 (64)
194 smart00734 ZnF_Rad18 Rad18-lik 30.0 25 0.00054 17.8 0.6 9 137-145 3-11 (26)
195 PF05353 Atracotoxin: Delta At 29.8 3.8 8.2E-05 23.2 -2.7 14 126-139 19-32 (42)
196 PHA00616 hypothetical protein 29.6 28 0.0006 20.2 0.8 12 19-30 2-13 (44)
197 PF02318 FYVE_2: FYVE-type zin 28.5 30 0.00064 24.2 1.0 33 98-130 54-88 (118)
198 PF15616 TerY-C: TerY-C metal 27.9 42 0.00091 24.2 1.7 43 95-146 74-116 (131)
199 PF11023 DUF2614: Protein of u 27.8 57 0.0012 22.9 2.3 22 130-151 80-101 (114)
200 smart00834 CxxC_CXXC_SSSS Puta 27.5 74 0.0016 17.2 2.4 11 16-26 24-34 (41)
201 KOG4218 Nuclear hormone recept 27.3 22 0.00048 30.0 0.2 46 98-144 15-76 (475)
202 PRK01343 zinc-binding protein; 27.1 30 0.00066 21.3 0.7 17 13-29 4-20 (57)
203 PF14169 YdjO: Cold-inducible 27.0 33 0.00072 21.2 0.9 13 135-147 39-51 (59)
204 smart00355 ZnF_C2H2 zinc finge 26.7 34 0.00074 15.8 0.8 11 19-29 1-11 (26)
205 COG4391 Uncharacterized protei 26.2 33 0.00071 21.5 0.7 16 13-28 43-58 (62)
206 KOG4323 Polycomb-like PHD Zn-f 26.2 73 0.0016 27.9 3.1 47 99-145 169-225 (464)
207 PF03119 DNA_ligase_ZBD: NAD-d 25.4 15 0.00033 19.0 -0.7 12 21-32 2-13 (28)
208 PF00130 C1_1: Phorbol esters/ 25.0 65 0.0014 18.6 1.9 33 98-130 11-45 (53)
209 PLN02638 cellulose synthase A 25.0 83 0.0018 30.6 3.4 48 99-146 18-70 (1079)
210 PF06170 DUF983: Protein of un 24.8 40 0.00086 22.4 1.0 25 130-154 3-27 (86)
211 KOG4021 Mitochondrial ribosoma 24.5 40 0.00087 26.1 1.1 21 125-145 97-118 (239)
212 PRK00418 DNA gyrase inhibitor; 23.2 61 0.0013 20.3 1.6 11 136-146 7-17 (62)
213 KOG3726 Uncharacterized conser 23.1 38 0.00083 31.0 0.9 40 99-141 655-695 (717)
214 KOG2979 Protein involved in DN 23.0 40 0.00086 27.2 0.9 40 99-141 177-219 (262)
215 PF00301 Rubredoxin: Rubredoxi 23.0 33 0.00072 20.1 0.3 13 15-27 31-43 (47)
216 PF01286 XPA_N: XPA protein N- 22.7 24 0.00051 19.4 -0.3 24 116-143 6-29 (34)
217 PHA02768 hypothetical protein; 22.5 27 0.00059 21.3 -0.1 11 18-28 5-15 (55)
218 PLN02248 cellulose synthase-li 22.5 73 0.0016 31.0 2.6 35 116-150 145-181 (1135)
219 PF09943 DUF2175: Uncharacteri 22.4 73 0.0016 22.0 2.0 32 100-132 4-35 (101)
220 COG2835 Uncharacterized conser 22.2 39 0.00085 21.0 0.6 12 136-147 9-20 (60)
221 COG4647 AcxC Acetone carboxyla 22.0 53 0.0012 23.8 1.3 24 100-126 59-82 (165)
222 COG1997 RPL43A Ribosomal prote 21.7 72 0.0016 21.4 1.8 37 121-159 15-57 (89)
223 KOG4443 Putative transcription 21.7 51 0.0011 30.1 1.4 26 118-143 40-70 (694)
224 PLN02400 cellulose synthase 21.7 76 0.0017 30.8 2.5 48 99-146 37-89 (1085)
225 PF13894 zf-C2H2_4: C2H2-type 21.5 26 0.00056 16.1 -0.3 9 20-28 2-10 (24)
226 KOG1245 Chromatin remodeling c 20.4 33 0.00071 34.2 -0.1 47 99-145 1109-1159(1404)
227 PF12088 DUF3565: Protein of u 20.4 70 0.0015 19.9 1.4 17 110-126 8-24 (61)
228 smart00109 C1 Protein kinase C 20.2 54 0.0012 18.2 0.9 32 99-130 12-44 (49)
229 PF10083 DUF2321: Uncharacteri 20.1 30 0.00065 25.7 -0.3 44 103-149 9-53 (158)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.4e-18 Score=137.68 Aligned_cols=72 Identities=24% Similarity=0.624 Sum_probs=61.8
Q ss_pred hHHhhhCCceeeccCCCcc---ccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCCCCCCC
Q 031191 81 SSVGMRMNSVEISESLSQE---SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPMINPSN 152 (164)
Q Consensus 81 ~~~~~~lp~~~~~~~~~~~---~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~~~~~~ 152 (164)
+....++|...+....... .|+||||+|..|++++.|||+|.||..||++||.+. ..||+||+++......+
T Consensus 209 k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~ 284 (348)
T KOG4628|consen 209 KRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSE 284 (348)
T ss_pred HHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCC
Confidence 3778889999998776553 999999999999999999999999999999999655 55999999886665443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.67 E-value=1.2e-17 Score=98.77 Aligned_cols=44 Identities=41% Similarity=1.040 Sum_probs=40.6
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR 142 (164)
++|+||+++|..++.++.++|+|.||.+||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999999999999999999998899999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.45 E-value=6.1e-14 Score=91.67 Aligned_cols=45 Identities=36% Similarity=0.909 Sum_probs=36.4
Q ss_pred ccccccccccccCC----------CccEEeCCCCccchhhHHHHhcCCCCCcccC
Q 031191 98 QESCAICKDEFSLH----------SEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142 (164)
Q Consensus 98 ~~~C~ICl~~~~~~----------~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR 142 (164)
++.|+||++.+.+. -.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 46799999999432 2344557999999999999999999999998
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.7e-14 Score=113.35 Aligned_cols=52 Identities=33% Similarity=0.763 Sum_probs=47.8
Q ss_pred CCccccccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCC
Q 031191 96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPM 147 (164)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~ 147 (164)
..+-+|+|||+.|-.+++.+.|||.|.||..||++|+. .+..||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 33489999999999999999999999999999999996 78899999999875
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.41 E-value=1.7e-13 Score=107.86 Aligned_cols=65 Identities=26% Similarity=0.459 Sum_probs=49.4
Q ss_pred HHhhhCCceeecc-----CCCccccccccccccCCCc----cEEe-CCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 82 SVGMRMNSVEISE-----SLSQESCAICKDEFSLHSE----AKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 82 ~~~~~lp~~~~~~-----~~~~~~C~ICl~~~~~~~~----~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..+..+|.+...- ...+.+|+||++.+.+++. ...+ +|+|.||..||.+|++.+.+||+||..+.
T Consensus 153 ~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 153 KFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred HHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 5566677665331 2234899999999876542 2344 59999999999999999999999999875
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.1e-13 Score=108.98 Aligned_cols=51 Identities=37% Similarity=0.872 Sum_probs=44.0
Q ss_pred cccccccccc-ccCC---------CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDE-FSLH---------SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~-~~~~---------~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
+..|.||+|+ ++.+ .++..|||||+||.+|++-|++++.+||+||.++.-+
T Consensus 287 D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd 347 (491)
T COG5243 287 DRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFD 347 (491)
T ss_pred CCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccc
Confidence 4899999999 5554 3578999999999999999999999999999995333
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.24 E-value=6.9e-12 Score=75.95 Aligned_cols=45 Identities=36% Similarity=0.820 Sum_probs=40.4
Q ss_pred cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|.||++...+ +..+||||. |+..|+.+|++.+..||+||+++.
T Consensus 3 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 589999999887 899999999 999999999999999999999875
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.4e-12 Score=97.71 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=42.6
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC---CCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH---QSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~~~~ 149 (164)
..+|.|||+.-++ ++++.|||.||+.||.+||.. ...|||||..+..+.
T Consensus 47 ~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 47 FFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred ceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 3899999999888 989999999999999999943 457899999886654
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.6e-12 Score=100.33 Aligned_cols=49 Identities=31% Similarity=0.736 Sum_probs=45.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~ 150 (164)
..|.+||+..++ +..+||||+||+.||..|...+..||+||..+.+...
T Consensus 240 ~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 240 RKCSLCLENRSN---PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CceEEEecCCCC---CCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 799999999988 9999999999999999999999999999998876644
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.20 E-value=9.1e-12 Score=94.73 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=42.3
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC----------------CCCCcccCccCCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH----------------QSSCPLCRFQLPMINP 150 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----------------~~~CP~CR~~v~~~~~ 150 (164)
..+|+||++.+.+ +++++|||.||+.||.+|+.. ...||+||..+.....
T Consensus 18 ~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 18 DFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred ccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 4799999999987 788899999999999999842 3579999999866543
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.18 E-value=1.7e-11 Score=71.34 Aligned_cols=44 Identities=39% Similarity=0.942 Sum_probs=35.9
Q ss_pred ccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccC
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQL 145 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v 145 (164)
+|+||++.+.. .....+|+|.||..|+..|++. +..||+||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999833 3444459999999999999976 77899999764
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.18 E-value=1.2e-11 Score=71.16 Aligned_cols=38 Identities=39% Similarity=0.947 Sum_probs=33.1
Q ss_pred cccccccccCCCcc-EEeCCCCccchhhHHHHhcCCCCCccc
Q 031191 101 CAICKDEFSLHSEA-KQLPCNHLYHSECILPCLSHQSSCPLC 141 (164)
Q Consensus 101 C~ICl~~~~~~~~~-~~lpC~H~Fh~~CI~~Wl~~~~~CP~C 141 (164)
|+||++.+.+ + +.++|||.||.+||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999988 6 678899999999999999889999998
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.09 E-value=6.5e-11 Score=69.18 Aligned_cols=38 Identities=37% Similarity=0.843 Sum_probs=30.3
Q ss_pred cccccccccCCCccEEeCCCCccchhhHHHHhcCC----CCCccc
Q 031191 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ----SSCPLC 141 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----~~CP~C 141 (164)
|+||++-|.+ ++.|+|||.|+..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 9999999999999999999543 369987
No 14
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.07 E-value=1.1e-10 Score=68.78 Aligned_cols=44 Identities=25% Similarity=0.770 Sum_probs=39.0
Q ss_pred ccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
.|+||++.|.+....+.++|||.|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966667888899999999999999867789999985
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6e-11 Score=103.85 Aligned_cols=50 Identities=36% Similarity=0.852 Sum_probs=45.2
Q ss_pred ccccccccccccCCCc--cEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 98 QESCAICKDEFSLHSE--AKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~--~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
...|+||+|.+..+.+ +.+|||+|+||..|+..|+++..+||.||..+..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 3899999999999776 7899999999999999999999999999995533
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.02 E-value=2e-10 Score=76.36 Aligned_cols=50 Identities=32% Similarity=0.777 Sum_probs=38.7
Q ss_pred ccccccccccccC--------CCc-cEEe-CCCCccchhhHHHHhcC---CCCCcccCccCCC
Q 031191 98 QESCAICKDEFSL--------HSE-AKQL-PCNHLYHSECILPCLSH---QSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~--------~~~-~~~l-pC~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~~ 147 (164)
++.|.||...|.. |+. +.++ .|+|.||..||.+|+.. +..||+||+++.-
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5789999999873 222 3333 49999999999999964 5789999998643
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=99.00 E-value=1.8e-10 Score=88.92 Aligned_cols=49 Identities=27% Similarity=0.653 Sum_probs=37.9
Q ss_pred ccccccccccccCC----C-ccEEeC-CCCccchhhHHHHhcCC------CCCcccCccCC
Q 031191 98 QESCAICKDEFSLH----S-EAKQLP-CNHLYHSECILPCLSHQ------SSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~----~-~~~~lp-C~H~Fh~~CI~~Wl~~~------~~CP~CR~~v~ 146 (164)
+.+|+||+|..-.. + ....|+ |+|.||..||..|.+.+ .+||+||..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 48999999987442 1 234554 99999999999999643 46999999764
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.00 E-value=2.3e-10 Score=66.25 Aligned_cols=38 Identities=37% Similarity=0.951 Sum_probs=33.9
Q ss_pred cccccccccCCCccE-EeCCCCccchhhHHHHhc--CCCCCccc
Q 031191 101 CAICKDEFSLHSEAK-QLPCNHLYHSECILPCLS--HQSSCPLC 141 (164)
Q Consensus 101 C~ICl~~~~~~~~~~-~lpC~H~Fh~~CI~~Wl~--~~~~CP~C 141 (164)
|+||++.+.. .. .++|+|.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~---~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED---PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS---EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC---CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999988 55 788999999999999997 66789987
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.99 E-value=3.5e-10 Score=63.48 Aligned_cols=38 Identities=37% Similarity=0.961 Sum_probs=33.4
Q ss_pred cccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCccc
Q 031191 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLC 141 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~C 141 (164)
|+||++.... .+.++|+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD---PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC---cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998544 88899999999999999997 67789987
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=5.8e-10 Score=83.31 Aligned_cols=50 Identities=30% Similarity=0.680 Sum_probs=42.7
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
..|+|||+.+..... +...|||+||..||+.-++....||+|++.|..+.
T Consensus 132 ~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 899999999987332 34669999999999999999999999998776554
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.95 E-value=6.1e-10 Score=70.11 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=42.4
Q ss_pred ccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
.|+||.+.+.+ ++.++|||.|++.||.+|++.+.+||+|+..+...+
T Consensus 3 ~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 3 LCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred CCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 69999999998 788999999999999999988899999999885443
No 22
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.86 E-value=1.6e-09 Score=70.69 Aligned_cols=29 Identities=38% Similarity=0.787 Sum_probs=26.9
Q ss_pred CCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 118 PCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 118 pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
-|+|.||..||.+||..++.||++|+.+.
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 39999999999999999999999999763
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=3.1e-09 Score=89.39 Aligned_cols=50 Identities=40% Similarity=0.772 Sum_probs=43.9
Q ss_pred CCccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
.....|+||++.|.. ++.++|+|.||..||..|+.....||+||..+...
T Consensus 24 e~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 334799999999987 77889999999999999998888999999987543
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.8e-09 Score=81.08 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=44.1
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHH-HhcCCCC-CcccCccCCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILP-CLSHQSS-CPLCRFQLPMINP 150 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~-Wl~~~~~-CP~CR~~v~~~~~ 150 (164)
+..|+||++.... +..++|||+||..||.. |-+++.. ||+||+.+.++..
T Consensus 215 d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 4789999999998 99999999999999999 9877766 9999998876654
No 25
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.63 E-value=2.7e-08 Score=59.96 Aligned_cols=42 Identities=29% Similarity=0.736 Sum_probs=33.4
Q ss_pred ccccccccccCCCccEEeCCC-----CccchhhHHHHh--cCCCCCcccC
Q 031191 100 SCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCL--SHQSSCPLCR 142 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl--~~~~~CP~CR 142 (164)
.|.||++ ..+++....+||. |.+|..|+.+|+ +.+.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999 4445556688974 889999999999 4456899995
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.5e-09 Score=68.00 Aligned_cols=48 Identities=35% Similarity=0.775 Sum_probs=37.4
Q ss_pred cccccccccccC--------CC-ccEEeC-CCCccchhhHHHHhcC---CCCCcccCccCC
Q 031191 99 ESCAICKDEFSL--------HS-EAKQLP-CNHLYHSECILPCLSH---QSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~--------~~-~~~~lp-C~H~Fh~~CI~~Wl~~---~~~CP~CR~~v~ 146 (164)
+.|.||..+|.. |+ -+.++- |.|.||..||.+|+.. +..||+||+.+.
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 699999999864 22 244444 9999999999999943 467999999763
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.5e-08 Score=85.07 Aligned_cols=54 Identities=28% Similarity=0.662 Sum_probs=44.8
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-----CCCCcccCccCCCCCCCCcc
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-----QSSCPLCRFQLPMINPSNVV 154 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-----~~~CP~CR~~v~~~~~~~~~ 154 (164)
+..|+|||+.... +..+.|||+||..||-+++.. ...||+||..+..++...+.
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 4799999999888 777789999999999887733 36899999999887766543
No 28
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.6e-08 Score=80.13 Aligned_cols=51 Identities=25% Similarity=0.746 Sum_probs=42.6
Q ss_pred ccccccccccccCCC-------ccEEeCCCCccchhhHHHHh--cCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHS-------EAKQLPCNHLYHSECILPCL--SHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~-------~~~~lpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~v~~~ 148 (164)
+..|+||-..+.... +.-.|.|+|.||..||..|- -.+.+||.|+..+..+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 469999999887654 56789999999999999998 5678999998877443
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.54 E-value=5.3e-08 Score=57.05 Aligned_cols=38 Identities=34% Similarity=0.914 Sum_probs=22.7
Q ss_pred cccccccccC-CCccEEeCCCCccchhhHHHHhcC----CCCCc
Q 031191 101 CAICKDEFSL-HSEAKQLPCNHLYHSECILPCLSH----QSSCP 139 (164)
Q Consensus 101 C~ICl~~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP 139 (164)
|+||.+ |.. ...+++|+|||.|+.+||.++++. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 755 456788999999999999999963 23565
No 30
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.5e-08 Score=84.70 Aligned_cols=49 Identities=35% Similarity=0.891 Sum_probs=39.3
Q ss_pred cccccccccccCCCc--------------cEEeCCCCccchhhHHHHhc-CCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSE--------------AKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~--------------~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~ 147 (164)
..|+|||.++.--.+ -..+||.|+||..|+.+|+. .+-.||+||.++++
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 789999998753111 12458999999999999998 66699999998865
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.52 E-value=7.6e-08 Score=80.96 Aligned_cols=58 Identities=26% Similarity=0.709 Sum_probs=44.7
Q ss_pred cccccccccccCCCc-cEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCCCcccccc
Q 031191 99 ESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWAC 158 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~~~~~~~ 158 (164)
.+|+|||+.+..... ++...|.|.||-.|+..| ...+||+||....+...+.....+|
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p~~ve~~~c~~c 234 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSPSVVESSLCLAC 234 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCcchhhhhhhhhh
Confidence 799999999987654 344559999999999999 7789999999776544444444433
No 32
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.5e-08 Score=65.56 Aligned_cols=47 Identities=32% Similarity=0.651 Sum_probs=35.5
Q ss_pred cccccccccccC------------CCc--cEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSL------------HSE--AKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~------------~~~--~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
+.|+||..-+-+ .++ +..-.|+|.||..||.+||+.++.||+|.++.
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 788888754421 122 33334999999999999999999999997764
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.44 E-value=1.5e-07 Score=61.31 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=39.9
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~~~ 150 (164)
..|+|+.+-+.+ ++++|+||.|.+.+|..|++. +.+||+++..+...+.
T Consensus 5 f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 5 FLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred cCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 689999999999 999999999999999999987 8999999998876543
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.36 E-value=1.4e-07 Score=77.08 Aligned_cols=48 Identities=31% Similarity=0.701 Sum_probs=44.6
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
-.|.||.+=|.. +.++||+|.||.-||...|..+..||.|+.++.+..
T Consensus 24 LRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 24 LRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 689999999999 999999999999999999999999999999886554
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.32 E-value=3e-07 Score=73.78 Aligned_cols=46 Identities=33% Similarity=0.631 Sum_probs=42.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|-||-+-|.. +..++|||.||.-||...|..+..||+||.+...
T Consensus 26 lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 789999999998 8889999999999999999999999999987643
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.27 E-value=1.5e-07 Score=60.93 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=22.7
Q ss_pred ccccccccccc-CCCccEE-e---CCCCccchhhHHHHhcC---C--------CCCcccCccCC
Q 031191 99 ESCAICKDEFS-LHSEAKQ-L---PCNHLYHSECILPCLSH---Q--------SSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~-~~~~~~~-l---pC~H~Fh~~CI~~Wl~~---~--------~~CP~CR~~v~ 146 (164)
.+|.||++.+. .++.+.. - .|++.||..|+.+||.. . ..||.|++++.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 58999999877 3333222 2 38999999999999942 1 25999998763
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=9.1e-07 Score=72.06 Aligned_cols=51 Identities=24% Similarity=0.426 Sum_probs=38.2
Q ss_pred cccccccccccCCCc--cEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSE--AKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~--~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~ 149 (164)
..|+||...-..... ..+.+|||.||..||...+ .....||.|+..+...+
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 579999986433322 2233799999999999965 55678999999886654
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.3e-07 Score=71.79 Aligned_cols=43 Identities=33% Similarity=0.777 Sum_probs=38.7
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
...|+||++.|.. +..+||+|.||..||..++.....||.||.
T Consensus 13 ~~~C~iC~~~~~~---p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFRE---PVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhc---CccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3799999999999 588999999999999999886678999993
No 39
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.20 E-value=4.4e-07 Score=75.61 Aligned_cols=115 Identities=21% Similarity=0.415 Sum_probs=71.3
Q ss_pred cchhHHhhhcCCCCCCCChhhhhhhhcccccCCCchhhhhccCCCCCCCCCCCCCChhHHhhhCCceeeccCCC------
Q 031191 24 WQTHFLEHMESINPDSPNQLTLQQQLTTDIDFNSLQFDYGCEGNDQSNSVASGLDNSSSVGMRMNSVEISESLS------ 97 (164)
Q Consensus 24 C~~~~le~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~------ 97 (164)
|+.+++..=.++-.....+..+.|++.+...+...+|..+...|-.-. ...++ .....+.++....
T Consensus 294 WAIGYVt~dG~IlQTIP~NKpL~QaL~eG~keGFYlyPdGr~~npdLt----~l~~~----~p~d~i~VtqEQyeLYceM 365 (563)
T KOG1785|consen 294 WAIGYVTADGNILQTIPQNKPLFQALLEGHKEGFYLYPDGRDQNPDLT----GLCQP----PPQDRIKVTQEQYELYCEM 365 (563)
T ss_pred eeEEEEcCCCceeeccCCCcHHHHHHHhccccceEECCCCccCCCChh----hccCC----CcccceeeeHHHHHHHHHc
Confidence 444444333333333344456778888888877777766555443221 11111 0011222222211
Q ss_pred --c-cccccccccccCCCccEEeCCCCccchhhHHHHhc--CCCCCcccCccCCCCC
Q 031191 98 --Q-ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS--HQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 --~-~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~~ 149 (164)
. +.|-||-|.-++ +.+-||||..|..|+..|-. ...+||.||.++....
T Consensus 366 gsTFeLCKICaendKd---vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 366 GSTFELCKICAENDKD---VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred cchHHHHHHhhccCCC---cccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 1 899999998777 98999999999999999982 3679999999886653
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.5e-07 Score=72.07 Aligned_cols=51 Identities=24% Similarity=0.528 Sum_probs=42.9
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMINPSN 152 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~~~~ 152 (164)
.+|+||+....- ++.|+|+|.||.-||+.-. ..+.+|++||.++...-..+
T Consensus 8 ~eC~IC~nt~n~---Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ 59 (324)
T KOG0824|consen 8 KECLICYNTGNC---PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFE 59 (324)
T ss_pred CcceeeeccCCc---CccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcc
Confidence 699999998666 7899999999999998876 55678999999997765444
No 41
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.17 E-value=3.8e-07 Score=82.70 Aligned_cols=48 Identities=31% Similarity=0.858 Sum_probs=36.8
Q ss_pred cccccccccccCCCc---cEEeC-CCCccchhhHHHHhc--CCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSE---AKQLP-CNHLYHSECILPCLS--HQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~---~~~lp-C~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~ 146 (164)
++|+||..-+..-+. -...+ |+|.||..|+.+|++ .+++||+||.++.
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 999999988763111 12233 999999999999994 5678999998764
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.4e-06 Score=71.72 Aligned_cols=48 Identities=29% Similarity=0.644 Sum_probs=42.6
Q ss_pred ccccccccccccCCCccEEeCCCC-ccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNH-LYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..+|.|||.+..+ ..+|||.| --|..|.+.-.-+.+.||+||+++..-
T Consensus 290 gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 290 GKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred CCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 4899999999999 99999999 589999999877889999999988543
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.4e-07 Score=74.47 Aligned_cols=50 Identities=30% Similarity=0.573 Sum_probs=42.2
Q ss_pred CccccccccccccCCCccEEeC-CCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191 97 SQESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-SHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~ 149 (164)
.+..|+|||+-+.. .+..+ |.|.||.+||..-| ..++.||.||+.+..+-
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 34799999999988 66666 99999999999988 66789999999776553
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.03 E-value=8.1e-07 Score=79.23 Aligned_cols=50 Identities=18% Similarity=0.390 Sum_probs=44.0
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|++|+..+.++......+|+|+||..||..|-+...+||+||..+...
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 67888888888877777778999999999999999999999999987544
No 45
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.1e-06 Score=71.26 Aligned_cols=47 Identities=28% Similarity=0.803 Sum_probs=35.3
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC---CCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ---SSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~---~~CP~CR~~v 145 (164)
..|.||-+-+.....+.-.. |||+||..|+..|+... ..||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 58999955554444455555 99999999999999653 5799998433
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.00 E-value=1.7e-06 Score=54.51 Aligned_cols=42 Identities=36% Similarity=0.858 Sum_probs=22.4
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
-.|++|.+-+.. ++.|. |.|.|+..||..-+. ..||+|+.+.
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 479999999988 77665 999999999988543 4599998865
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.95 E-value=2e-06 Score=69.38 Aligned_cols=53 Identities=25% Similarity=0.616 Sum_probs=44.0
Q ss_pred CCccccccccccccCCCccEEeCCCCccchhhHHHHhc-----------------------CCCCCcccCccCCCC
Q 031191 96 LSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-----------------------HQSSCPLCRFQLPMI 148 (164)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-----------------------~~~~CP~CR~~v~~~ 148 (164)
.....|.|||.-|.+++...+++|-|.||..|+.++|. ....||+||..+..+
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 33479999999999999999999999999999988663 123699999987543
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.6e-06 Score=69.17 Aligned_cols=49 Identities=31% Similarity=0.757 Sum_probs=38.6
Q ss_pred ccccccccccccCCC----ccEEeC-CCCccchhhHHHHh--cC-----CCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHS----EAKQLP-CNHLYHSECILPCL--SH-----QSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~----~~~~lp-C~H~Fh~~CI~~Wl--~~-----~~~CP~CR~~v~ 146 (164)
+..|.||++...+.. ...+|| |.|.||..||..|- ++ ...||.||....
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 489999999887744 123456 99999999999998 44 478999998543
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.1e-05 Score=67.49 Aligned_cols=46 Identities=35% Similarity=0.829 Sum_probs=36.3
Q ss_pred cccccccccccCC-Ccc-EEeCCCCccchhhHHHHh--cCCCCCcccCcc
Q 031191 99 ESCAICKDEFSLH-SEA-KQLPCNHLYHSECILPCL--SHQSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~-~~~-~~lpC~H~Fh~~CI~~Wl--~~~~~CP~CR~~ 144 (164)
.+|+||++.|... +.. +.+-|+|.|..+||.+|| +....||.|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 5899999999864 333 334599999999999999 334689999654
No 50
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.4e-05 Score=71.28 Aligned_cols=48 Identities=23% Similarity=0.630 Sum_probs=41.9
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~ 149 (164)
-.|+.|-..+++ .++..|+|.||..||.+-+ -+...||.|...|..-+
T Consensus 644 LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 689999999998 8778899999999999988 56789999998885544
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.3e-05 Score=65.34 Aligned_cols=48 Identities=29% Similarity=0.728 Sum_probs=44.1
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
+.+|.||+..+.. ++.+||||.||..||.+-+.....||.||..+..-
T Consensus 84 ef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 84 EFECCVCSRALYP---PVVTPCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred hhhhhhhHhhcCC---CccccccccccHHHHHHHhccCCCCcccccccccc
Confidence 4899999999988 99999999999999999889999999999998763
No 52
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=1.5e-05 Score=48.47 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=35.8
Q ss_pred cccccccccccCCCccEEeCCCCc-cchhhHHHHh-cCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCL-SHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl-~~~~~CP~CR~~v~~ 147 (164)
++|.||+|...+ .+...|||. .|..|-.+-+ ..+..||+||+++.+
T Consensus 8 dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 699999998777 555669995 6777866544 478999999998743
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.48 E-value=8.5e-05 Score=46.06 Aligned_cols=40 Identities=25% Similarity=0.572 Sum_probs=28.4
Q ss_pred ccccccccccccCCCccEEe-CCCCccchhhHHHHh--cCCCCCcc
Q 031191 98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCL--SHQSSCPL 140 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl--~~~~~CP~ 140 (164)
...|+|.+..|++ ++.- .|+|.|-++.|.+|+ .....||+
T Consensus 11 ~~~CPiT~~~~~~---PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFED---PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SS---EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhC---CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4789999999998 7765 599999999999999 34457998
No 54
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=4e-05 Score=56.82 Aligned_cols=27 Identities=30% Similarity=0.810 Sum_probs=26.2
Q ss_pred cccccccccccCCCccEEeCCCCccch
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHS 125 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~ 125 (164)
.+|.||||++..|+++..|||..+||+
T Consensus 178 GECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 178 GECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred CcEEEEhhhccCCCceeccceEEEeec
Confidence 799999999999999999999999996
No 55
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.38 E-value=0.00012 Score=43.55 Aligned_cols=40 Identities=23% Similarity=0.618 Sum_probs=27.9
Q ss_pred cccccccccCCCccEEeCCC--C---ccchhhHHHHhc--CCCCCccc
Q 031191 101 CAICKDEFSLHSEAKQLPCN--H---LYHSECILPCLS--HQSSCPLC 141 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~--H---~Fh~~CI~~Wl~--~~~~CP~C 141 (164)
|-||++.-..++ ..+.||+ - ..|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999887766 5567863 3 789999999994 56789887
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.22 E-value=9.8e-05 Score=61.72 Aligned_cols=45 Identities=33% Similarity=0.897 Sum_probs=37.5
Q ss_pred cccccccccccCCC-ccEEeCCCCccchhhHHHHhcCC--CCCcccCc
Q 031191 99 ESCAICKDEFSLHS-EAKQLPCNHLYHSECILPCLSHQ--SSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~-~~~~lpC~H~Fh~~CI~~Wl~~~--~~CP~CR~ 143 (164)
--|..|=+.+...+ ...-|||.|+||..|+...|.++ .+||-||+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 67999999887654 45679999999999999999544 68999994
No 57
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.21 E-value=0.00017 Score=62.38 Aligned_cols=53 Identities=21% Similarity=0.555 Sum_probs=42.7
Q ss_pred CccccccccccccCCCccEEeCCCCccchhhHHHHhc-----CCCCCcccCccCCCCCCCC
Q 031191 97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-----HQSSCPLCRFQLPMINPSN 152 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-----~~~~CP~CR~~v~~~~~~~ 152 (164)
....|.+|-++-++ .+...|.|.||+-||+.+.. .+-+||+|-..+..+...+
T Consensus 535 ~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 535 GEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred CceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 34799999998887 88888999999999988773 3568999988876654443
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.19 E-value=0.00017 Score=61.10 Aligned_cols=50 Identities=30% Similarity=0.673 Sum_probs=42.9
Q ss_pred cccccccccccCCCccEE-eCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQ-LPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS 151 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~ 151 (164)
..|++|...+.+ +.. ..|+|.||..|+..|+..+..||.|+..+......
T Consensus 22 l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 22 LLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred ccCccccccccC---CCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 789999999998 666 47999999999999998899999998877555433
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.18 E-value=0.00019 Score=51.77 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=30.5
Q ss_pred cccccccccccCCCccEEeCCC------CccchhhHHHHhc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCN------HLYHSECILPCLS 133 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~------H~Fh~~CI~~Wl~ 133 (164)
.+|.||++.+..++.++.++|+ |.||.+|+++|-+
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6999999999997777788875 8999999999953
No 60
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.12 E-value=0.00022 Score=54.67 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=40.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
..|.||-.+|.. +++..|||.||..|..+-++....|-+|-+.-
T Consensus 197 F~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 799999999999 98999999999999999999999999996643
No 61
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.09 E-value=0.00039 Score=41.44 Aligned_cols=44 Identities=25% Similarity=0.604 Sum_probs=22.3
Q ss_pred cccccccccCCCccEEeC--CCCccchhhHHHHhc-CCCCCcccCccC
Q 031191 101 CAICKDEFSLHSEAKQLP--CNHLYHSECILPCLS-HQSSCPLCRFQL 145 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lp--C~H~Fh~~CI~~Wl~-~~~~CP~CR~~v 145 (164)
|++|.+++...+ ....| |++..++.|...-++ .+..||-||++.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 23555 789999999888875 688999999864
No 62
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00042 Score=54.13 Aligned_cols=50 Identities=22% Similarity=0.578 Sum_probs=41.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcC--------CCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH--------QSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~--------~~~CP~CR~~v~~~~ 149 (164)
..|..|--.+..|+.++ |-|-|.||.+|+..|-.. .-.||.|..++.+..
T Consensus 51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 67999999999999885 459999999999999732 247999999886553
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.05 E-value=0.0001 Score=60.24 Aligned_cols=50 Identities=22% Similarity=0.569 Sum_probs=41.6
Q ss_pred CCccccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 96 LSQESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
....+|.+|-.=|-+ ..... |-|.||+.||.+.|...++||.|...+-..
T Consensus 13 n~~itC~LC~GYliD---ATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLID---ATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeec---chhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 344799999988888 55555 999999999999998899999998766443
No 64
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.01 E-value=0.00044 Score=65.93 Aligned_cols=51 Identities=31% Similarity=0.726 Sum_probs=40.2
Q ss_pred CccccccccccccCCCccEEeCCCCccchhhHHHHhcCC----------CCCcccCccCCC
Q 031191 97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ----------SSCPLCRFQLPM 147 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~----------~~CP~CR~~v~~ 147 (164)
.++.|.||+.+--.....+.|.|+|+||.+|...-|+.+ -+||+|+..+..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 348999999887776777899999999999997655322 379999987754
No 65
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.71 E-value=0.0015 Score=48.41 Aligned_cols=59 Identities=32% Similarity=0.728 Sum_probs=40.6
Q ss_pred ccccccccccccCCCccEEeCCC--C---ccchhhHHHHh--cCCCCCcccCccCCCC-CCCCcccccccC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCN--H---LYHSECILPCL--SHQSSCPLCRFQLPMI-NPSNVVSWACSS 160 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~--H---~Fh~~CI~~Wl--~~~~~CP~CR~~v~~~-~~~~~~~~~~~~ 160 (164)
+..|-||.++-.. . .-||. . .-|.+|+.+|+ .+...|+.|++++... ..-+..-|.++.
T Consensus 8 ~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kpl~~W~~~~ 74 (162)
T PHA02825 8 DKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKKCTKWRCSF 74 (162)
T ss_pred CCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCCCccccccC
Confidence 4799999988432 2 34754 3 56999999999 4456899999987444 333444566554
No 66
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.70 E-value=0.00089 Score=60.75 Aligned_cols=46 Identities=24% Similarity=0.596 Sum_probs=36.6
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC-------CCCcccCcc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ-------SSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~-------~~CP~CR~~ 144 (164)
.+|.||.+.+...+.+..-. |-|+||..||.+|-+.. -.||.|...
T Consensus 192 yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 192 YECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred eEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 89999999998866554443 89999999999999431 259999743
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0022 Score=51.43 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=39.3
Q ss_pred CCccccccccccccCCCccEE-eCCCCccchhhHHHHhc--CCCCCcccCccCCCCC
Q 031191 96 LSQESCAICKDEFSLHSEAKQ-LPCNHLYHSECILPCLS--HQSSCPLCRFQLPMIN 149 (164)
Q Consensus 96 ~~~~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~~ 149 (164)
..+.+|++|-+.... +-+ .+|+|+||..||..-+. ...+||.|-..+.+..
T Consensus 237 t~~~~C~~Cg~~Pti---P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTI---PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cCCceeeccCCCCCC---CeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 344899999998766 544 45999999999998764 4479999988776443
No 68
>PHA02862 5L protein; Provisional
Probab=96.62 E-value=0.0013 Score=48.05 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=35.6
Q ss_pred cccccccccccCCCccEEeCCC-----CccchhhHHHHh--cCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCL--SHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl--~~~~~CP~CR~~v~~~~ 149 (164)
..|-||.++-.+. .-||. ..-|.+|+.+|+ .++..|++|+.+...+.
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 5799999985432 35653 578999999999 45678999999875443
No 69
>PHA03096 p28-like protein; Provisional
Probab=96.56 E-value=0.0011 Score=53.97 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=34.0
Q ss_pred cccccccccccCCC----ccEEeC-CCCccchhhHHHHhcCC---C---CCcccCccC
Q 031191 99 ESCAICKDEFSLHS----EAKQLP-CNHLYHSECILPCLSHQ---S---SCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~----~~~~lp-C~H~Fh~~CI~~Wl~~~---~---~CP~CR~~v 145 (164)
..|.||++...... .-..|+ |.|.|+..||..|.... . .||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 68999999887632 344677 99999999999999432 3 455555443
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.56 E-value=0.00089 Score=45.95 Aligned_cols=30 Identities=30% Similarity=0.735 Sum_probs=26.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHH
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECIL 129 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~ 129 (164)
..|++|-..+.. ....+.||||.||..|++
T Consensus 79 ~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 689999999987 556788999999999975
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0011 Score=53.62 Aligned_cols=44 Identities=25% Similarity=0.538 Sum_probs=40.6
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
..|-||...|.. +++..|+|.||..|..+-++....|++|-+..
T Consensus 242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred cccccccccccc---chhhcCCceeehhhhccccccCCcceeccccc
Confidence 679999999999 99999999999999999999899999997754
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.34 E-value=0.0019 Score=52.45 Aligned_cols=47 Identities=28% Similarity=0.643 Sum_probs=37.9
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHh-cCCCCCccc-CccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-SHQSSCPLC-RFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP~C-R~~v~~~ 148 (164)
..|+.|-.-+.. ...+| |+|.||.+||..-| .....||.| |+++.-+
T Consensus 275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld 324 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD 324 (427)
T ss_pred ccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence 689999888877 66677 89999999999877 677899999 4454433
No 73
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.21 E-value=0.003 Score=38.61 Aligned_cols=37 Identities=24% Similarity=0.629 Sum_probs=30.0
Q ss_pred CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 111 HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 111 ~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
+.+...+||+|..+..|..-+ +-+.||+|-+++...+
T Consensus 17 ~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 17 GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ccccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 344778999999999997765 6788999998886654
No 74
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=96.17 E-value=0.002 Score=37.56 Aligned_cols=41 Identities=29% Similarity=0.746 Sum_probs=23.1
Q ss_pred cccccccccCCCccEEeCCCCccchhhHHHHhcCCC--CCccc
Q 031191 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS--SCPLC 141 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~--~CP~C 141 (164)
|.+|.+....|+.-..-.|+-.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667777776654443334999999999999996555 79987
No 75
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0036 Score=52.02 Aligned_cols=47 Identities=26% Similarity=0.440 Sum_probs=41.3
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
+..|+||...--. .+..||+|.-|..||.+-|-..+.|=.|+..+..
T Consensus 422 d~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 422 DNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4899999987655 6788999999999999999999999999998763
No 76
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0032 Score=52.22 Aligned_cols=42 Identities=36% Similarity=0.853 Sum_probs=33.8
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|.||+++..+ ..-+||||.-+ |..-- +...+||+||+.+.
T Consensus 306 ~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 306 DLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 899999999998 88999999866 55443 44566999998763
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0032 Score=53.06 Aligned_cols=35 Identities=29% Similarity=0.623 Sum_probs=32.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS 133 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~ 133 (164)
..|.||+++.....-...+||+|+||+.|++.++.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 89999999988878888999999999999999984
No 78
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.0017 Score=52.49 Aligned_cols=40 Identities=33% Similarity=0.688 Sum_probs=33.2
Q ss_pred cccccccccccCCCccEEeCCCC-ccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNH-LYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
..|.||++...+ -+.|+||| +-|.+|-++ -+.||+||+-+
T Consensus 301 ~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 301 RLCAICMDAPRD---CVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHhcCCcc---eEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 789999999988 99999999 557777554 34899999865
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0085 Score=47.51 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=46.2
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~ 150 (164)
..|+||.+.+........|. |||+|+.+|+.+.++....||+|-.++.+.+.
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 78999999999977777775 99999999999999999999999888877654
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.83 E-value=0.0038 Score=49.17 Aligned_cols=49 Identities=22% Similarity=0.539 Sum_probs=36.0
Q ss_pred ccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS 151 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~ 151 (164)
.|..|.---. ++....+.|.|+||..|...-. ...||+||+.+......
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~ 53 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLN 53 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeeeeecc
Confidence 5776766555 6677777799999999987742 23899999987555443
No 81
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0073 Score=49.00 Aligned_cols=47 Identities=28% Similarity=0.694 Sum_probs=39.2
Q ss_pred cccccccccccCCC---ccEEeCCCCccchhhHHHHh-cCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHS---EAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~---~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v 145 (164)
..|-||-++|..++ .++.|.|||.|+..|+.+-+ .....||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999999874 36778899999999999877 4446799999985
No 82
>PF14369 zf-RING_3: zinc-finger
Probab=95.56 E-value=0.0054 Score=34.14 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=14.5
Q ss_pred cCCCCCCCCCcchhHHhhh
Q 031191 14 LPLQEVLCPQWQTHFLEHM 32 (164)
Q Consensus 14 ~~~~~~~Cp~C~~~~le~~ 32 (164)
...+.+.||.|+.+|+|+|
T Consensus 17 ~~~~~~~CP~C~~gFvEei 35 (35)
T PF14369_consen 17 SPDSDVACPRCHGGFVEEI 35 (35)
T ss_pred CCCCCcCCcCCCCcEeEeC
Confidence 3444456999999999976
No 83
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.015 Score=44.07 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=31.9
Q ss_pred cccccccccccCCCc----cEEeCCCCccchhhHHHHhcCC-----------CCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSE----AKQLPCNHLYHSECILPCLSHQ-----------SSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~----~~~lpC~H~Fh~~CI~~Wl~~~-----------~~CP~CR~~v~~ 147 (164)
..|.||..---+|-. .-...|+.-||.-|+..||+.- ..||.|..++.-
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 456666532222221 2234599999999999999532 369999887643
No 84
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.96 E-value=0.019 Score=42.58 Aligned_cols=52 Identities=27% Similarity=0.524 Sum_probs=37.1
Q ss_pred ccccccccccccCCCccEEeC------------CC-CccchhhHHHHhcC------------------------------
Q 031191 98 QESCAICKDEFSLHSEAKQLP------------CN-HLYHSECILPCLSH------------------------------ 134 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp------------C~-H~Fh~~CI~~Wl~~------------------------------ 134 (164)
+..|+||||-... .+.|- |+ -.-|..|+++.-+.
T Consensus 2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 3589999999887 44443 43 34578899886531
Q ss_pred -CCCCcccCccCCCCCCCC
Q 031191 135 -QSSCPLCRFQLPMINPSN 152 (164)
Q Consensus 135 -~~~CP~CR~~v~~~~~~~ 152 (164)
+..||+||.+|..+...+
T Consensus 79 ~~L~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVVE 97 (162)
T ss_pred ccccCccccCceeceEEch
Confidence 235999999998886554
No 85
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.93 E-value=0.029 Score=46.63 Aligned_cols=44 Identities=32% Similarity=0.776 Sum_probs=37.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHH--HhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILP--CLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~--Wl~~~~~CP~CR~~v 145 (164)
..|.||-+.+.- ...+||+|.-|--|..+ .|-....||+||.+.
T Consensus 62 ~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 62 MNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 789999998776 88999999999999865 346778999999865
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.88 E-value=0.041 Score=46.16 Aligned_cols=68 Identities=16% Similarity=0.338 Sum_probs=41.1
Q ss_pred HHhhhCCceeec-cCCCccccccccccccC-------------CCcc----EEeC--CCCccchhhHHHHh--cC-----
Q 031191 82 SVGMRMNSVEIS-ESLSQESCAICKDEFSL-------------HSEA----KQLP--CNHLYHSECILPCL--SH----- 134 (164)
Q Consensus 82 ~~~~~lp~~~~~-~~~~~~~C~ICl~~~~~-------------~~~~----~~lp--C~H~Fh~~CI~~Wl--~~----- 134 (164)
+.+..=|..... +..+.+.|.-|+..-.+ |... ...+ |.-++|.+|+.+|+ ++
T Consensus 254 ~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~ 333 (358)
T PF10272_consen 254 EQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHP 333 (358)
T ss_pred HHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCCh
Confidence 344444555555 22334788889875433 1000 1112 45678999999998 22
Q ss_pred ------CCCCcccCccCCCCC
Q 031191 135 ------QSSCPLCRFQLPMIN 149 (164)
Q Consensus 135 ------~~~CP~CR~~v~~~~ 149 (164)
+..||.||+.+...+
T Consensus 334 ~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 334 ETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred hhhhcCCCCCCCCcccceeee
Confidence 347999999886554
No 87
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.0012 Score=55.16 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=44.8
Q ss_pred cccccccccccCC-CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLH-SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~-~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
..|+||.+.++.. +++..+-|+|.+|..|+.+||.....||.|+.+++...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 8999999999886 66777789999999999999988999999999886543
No 88
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.032 Score=45.90 Aligned_cols=44 Identities=18% Similarity=0.512 Sum_probs=37.4
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
..|+||+..... ...+. =|-+||..||.+.+...+.||+=-.+.
T Consensus 301 ~~CpvClk~r~N---ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 301 EVCPVCLKKRQN---PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccChhHHhccCC---CceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 899999998777 55555 599999999999999999999865544
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.05 E-value=0.051 Score=33.17 Aligned_cols=32 Identities=25% Similarity=0.651 Sum_probs=28.5
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHH
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILP 130 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~ 130 (164)
..|.+|-+.|.+++.+++-| |+-.+|+.|-..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 58999999999888888988 999999999543
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.96 E-value=0.03 Score=33.14 Aligned_cols=43 Identities=28% Similarity=0.606 Sum_probs=25.8
Q ss_pred cccccccccCCCccEEeCC-CCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 101 CAICKDEFSLHSEAKQLPC-NHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC-~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
|--|+-.... ...| .|..|..|+...|.....||+|..+++.+
T Consensus 5 CKsCWf~~k~-----Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 5 CKSCWFANKG-----LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp --SS-S--SS-----EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ChhhhhcCCC-----eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 4455544433 4557 59999999999999999999999988654
No 91
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.94 E-value=0.063 Score=43.08 Aligned_cols=51 Identities=18% Similarity=0.463 Sum_probs=40.5
Q ss_pred ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
...|+|...+|......+.+ ||||+|-..+|..- +....||+|-.++...+
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED 164 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence 38999999999665555555 69999999999996 33567999999887543
No 92
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.76 E-value=0.017 Score=52.34 Aligned_cols=50 Identities=28% Similarity=0.586 Sum_probs=39.1
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcC--CCCCcccCccCCCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH--QSSCPLCRFQLPMINPSN 152 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~--~~~CP~CR~~v~~~~~~~ 152 (164)
..|.||++ .. .....+|+|.||.+|+..-+.. ...||.||..+..+....
T Consensus 455 ~~c~ic~~-~~---~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LD---SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cc---cceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 68999999 33 3778889999999999887732 346999999876665444
No 93
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.57 E-value=0.041 Score=44.50 Aligned_cols=49 Identities=35% Similarity=0.697 Sum_probs=40.1
Q ss_pred CCCccccccccccccCCCc-cEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191 95 SLSQESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 95 ~~~~~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
......|+||.+.+..+.. +..++|+|.-|..|.......+-+||+|.+
T Consensus 155 ~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 155 RSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred hcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3334669999998877654 567889999999999998877789999987
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.29 E-value=0.06 Score=44.72 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=38.0
Q ss_pred CccccccccccccCCCcc-EEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCCC
Q 031191 97 SQESCAICKDEFSLHSEA-KQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~-~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~~ 150 (164)
+++-|+.|++++...++- .-.|||-..|.-|-..-- ..+..||-||+...+.+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 346799999999887764 335688777766644432 356789999997765543
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.038 Score=45.29 Aligned_cols=32 Identities=28% Similarity=0.781 Sum_probs=24.9
Q ss_pred CccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191 112 SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 112 ~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
...+..||+|+||.+|... ...+.||.|-..|
T Consensus 102 IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 102 IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 3567789999999999755 4567999996544
No 96
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.59 E-value=0.051 Score=44.10 Aligned_cols=52 Identities=21% Similarity=0.488 Sum_probs=39.5
Q ss_pred ccccccccccccCCCc-cEEeCCC-----CccchhhHHHHhc--CCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSE-AKQLPCN-----HLYHSECILPCLS--HQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~-~~~lpC~-----H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~~ 149 (164)
+..|-||.++...... ....||. +..|+.|+..|+. .+..|.+|........
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~ 137 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVG 137 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecc
Confidence 3789999998765432 4566763 6789999999995 7788999988765543
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=0.061 Score=49.47 Aligned_cols=34 Identities=26% Similarity=0.778 Sum_probs=27.8
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHh
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL 132 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl 132 (164)
++.|.+|...+... .-.+.||||.||++||.+-.
T Consensus 817 ~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 48999999988764 45578899999999997644
No 98
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=0.059 Score=49.38 Aligned_cols=42 Identities=29% Similarity=0.801 Sum_probs=32.7
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
..|..|--.+.- -.+...|+|.||.+|+. .....||-|+.+.
T Consensus 841 skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCcccc--ceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 689999888776 13345699999999998 4567899998744
No 99
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.83 E-value=0.1 Score=42.77 Aligned_cols=41 Identities=29% Similarity=0.728 Sum_probs=33.4
Q ss_pred cccccccccccCCCccEEeCC--CCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPC--NHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC--~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
.+|+||.+.+.. + ++.| ||+-|..|-. +..+.||.||.++.
T Consensus 49 leCPvC~~~l~~---P-i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 49 LDCPVCFNPLSP---P-IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred ccCchhhccCcc---c-ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 799999999887 4 4447 7999999865 36788999999886
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=0.12 Score=43.77 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=28.2
Q ss_pred CccccccccccccCC-CccEEeCCCCccchhhHHHHhc
Q 031191 97 SQESCAICKDEFSLH-SEAKQLPCNHLYHSECILPCLS 133 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~-~~~~~lpC~H~Fh~~CI~~Wl~ 133 (164)
...+|.||..+.... +......|+|.||.+|+++.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 347999999555444 4455556999999999998885
No 101
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.45 E-value=0.33 Score=41.01 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=39.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCC---CCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ---SSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~---~~CP~CR~ 143 (164)
..|+|=.+.-.+.+-+..|.|||+..++-|.+-.+.. .-||+|=.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 8999999999999999999999999999999977544 46999943
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=0.18 Score=39.21 Aligned_cols=40 Identities=30% Similarity=0.633 Sum_probs=29.9
Q ss_pred ccccccccccCCCccEEeCCCC-ccchhhHHHHhcCCCCCcccCccCC
Q 031191 100 SCAICKDEFSLHSEAKQLPCNH-LYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
.|-.|-+.-.. +..+||.| .+|..|=.. -..||+|+....
T Consensus 160 ~Cr~C~~~~~~---VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREAT---VLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCce---EEeecccceEeccccccc----CccCCCCcChhh
Confidence 38888876555 89999976 788888543 456999987653
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.16 E-value=0.1 Score=49.81 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=37.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCcc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~ 144 (164)
..|.||++.+... ..+.-|+|.++..|+..|+..+..||.|+..
T Consensus 1154 ~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 6899999998841 3345599999999999999999999999753
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.73 E-value=0.35 Score=34.96 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=36.4
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHH-Hh--cCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILP-CL--SHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~-Wl--~~~~~CP~CR~~v~~~~ 149 (164)
-.+|.||.|.-.+..-..-=. ||-..|.-|-.. |- .....||+|++.+....
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 489999999876632222222 898888887644 54 45689999999886553
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=0.49 Score=38.47 Aligned_cols=49 Identities=24% Similarity=0.506 Sum_probs=34.8
Q ss_pred ccccccccccCCCccE--EeCCCCccchhhHHHHh-cCCCCCcccCccCCCC
Q 031191 100 SCAICKDEFSLHSEAK--QLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMI 148 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~--~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~ 148 (164)
.|++|....--...+. +-+|+|.-|..|++.-+ .....||.|-..+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 5888885544332222 22699999999999998 5667899997765443
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.51 E-value=0.14 Score=46.13 Aligned_cols=49 Identities=20% Similarity=0.562 Sum_probs=39.6
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhc---CCCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS---HQSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~CR~~v~~~~~ 150 (164)
.+|+||+..+.. ...+.|.|.|+..|+..-|. ....||+|+..+.....
T Consensus 22 lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 22 LECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred ccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 699999999999 67788999999999977553 34689999977755543
No 107
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.30 E-value=0.36 Score=44.09 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=23.1
Q ss_pred cEEeCCCCccchhhHHHHhcCCCCCcc
Q 031191 114 AKQLPCNHLYHSECILPCLSHQSSCPL 140 (164)
Q Consensus 114 ~~~lpC~H~Fh~~CI~~Wl~~~~~CP~ 140 (164)
.....|+|.-|..|.+.|++....||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 345669999999999999999989984
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=0.24 Score=40.36 Aligned_cols=32 Identities=22% Similarity=0.629 Sum_probs=24.6
Q ss_pred CCCccchhhHHHHhc-------------CCCCCcccCccCCCCCC
Q 031191 119 CNHLYHSECILPCLS-------------HQSSCPLCRFQLPMINP 150 (164)
Q Consensus 119 C~H~Fh~~CI~~Wl~-------------~~~~CP~CR~~v~~~~~ 150 (164)
|...+|.+|+.+|+. ++.+||.||+.+...+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 567889999999882 34589999998865543
No 109
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.93 E-value=0.3 Score=38.81 Aligned_cols=45 Identities=24% Similarity=0.588 Sum_probs=33.8
Q ss_pred cccccccccccCCC--ccEEeC-CCCccchhhHHHHh-cCCCCCc--ccCc
Q 031191 99 ESCAICKDEFSLHS--EAKQLP-CNHLYHSECILPCL-SHQSSCP--LCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~--~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP--~CR~ 143 (164)
..|+||..+-.-.. +.-+-| |-|..|.+|+++-| .....|| -|-+
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 58999997654332 344457 99999999999999 5567899 6743
No 110
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.70 E-value=0.36 Score=38.67 Aligned_cols=48 Identities=25% Similarity=0.548 Sum_probs=35.3
Q ss_pred ccccccccccccCCCcc-EEeCC-----CCccchhhHHHHhcCC--------CCCcccCccC
Q 031191 98 QESCAICKDEFSLHSEA-KQLPC-----NHLYHSECILPCLSHQ--------SSCPLCRFQL 145 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~-~~lpC-----~H~Fh~~CI~~Wl~~~--------~~CP~CR~~v 145 (164)
+.-|=||+..=+++-.. -+-|| .|=.|..|+..|+..+ -+||-|+++.
T Consensus 20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 46899999876664433 34566 3778999999999432 2699999875
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.02 E-value=1.1 Score=41.00 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=30.5
Q ss_pred cccccccccccCCCccEEe-C-CCCccchhhHHHHhcCCCCCcc
Q 031191 99 ESCAICKDEFSLHSEAKQL-P-CNHLYHSECILPCLSHQSSCPL 140 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-p-C~H~Fh~~CI~~Wl~~~~~CP~ 140 (164)
..|.+|-..+.. +... + |+|.=|.+|+++|+.....||.
T Consensus 780 ~~CtVC~~vi~G---~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG---VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee---eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 578888776655 3333 3 9999999999999988887766
No 112
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.52 E-value=0.78 Score=40.62 Aligned_cols=53 Identities=32% Similarity=0.592 Sum_probs=43.0
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCCCcccccc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVVSWAC 158 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~~~~~~~ 158 (164)
..|.||+++. ..+..+|. |.-|...|+..+..||+|+..+..++..+-.++..
T Consensus 480 ~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ 532 (543)
T KOG0802|consen 480 DVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSKNSSES 532 (543)
T ss_pred CcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccCcccccc
Confidence 7899999988 36667788 99999999999999999999887766665555543
No 113
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=80.73 E-value=0.64 Score=37.44 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=33.8
Q ss_pred cccccccccccCCCccEEe---C-CCCccchhhHHHHhc---------CCCCCcccCcc
Q 031191 99 ESCAICKDEFSLHSEAKQL---P-CNHLYHSECILPCLS---------HQSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l---p-C~H~Fh~~CI~~Wl~---------~~~~CP~CR~~ 144 (164)
.+|.+|.+++...+..+.. + |.-.+|..|+..-+. ....||.|++.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 6899999999554444332 2 899999999998442 23579999874
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.73 E-value=0.83 Score=42.07 Aligned_cols=51 Identities=14% Similarity=0.333 Sum_probs=37.5
Q ss_pred cccccccccccCC-CccEEeC---CCCccchhhHHHHhc------CCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLH-SEAKQLP---CNHLYHSECILPCLS------HQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~-~~~~~lp---C~H~Fh~~CI~~Wl~------~~~~CP~CR~~v~~~~ 149 (164)
..|.||.-++... +....+| |+|.||..||..|+. .+-.|++|...|..+.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 6788888777763 2333445 999999999999993 2456899988776554
No 115
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.10 E-value=1.4 Score=40.83 Aligned_cols=49 Identities=24% Similarity=0.677 Sum_probs=36.4
Q ss_pred cccccccccccCCCccEEeCCC-----CccchhhHHHHhc--CCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCLS--HQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl~--~~~~CP~CR~~v~~~ 148 (164)
..|-||..+-..++.. --||+ ..-|.+|+.+|+. ....|-+|+.++.=+
T Consensus 13 ~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 13 RSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred hhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 7999999776554443 44664 4689999999994 456799998876443
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=79.63 E-value=0.96 Score=35.27 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=34.7
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
..|.+|..-.-.| ++.-.|+-.+|..|+...+.....||-|..
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 7899998876551 334458899999999999999999999943
No 117
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=78.80 E-value=1.3 Score=34.27 Aligned_cols=38 Identities=32% Similarity=0.960 Sum_probs=25.3
Q ss_pred ccccccccc-----ccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccC
Q 031191 99 ESCAICKDE-----FSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCR 142 (164)
Q Consensus 99 ~~C~ICl~~-----~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR 142 (164)
..|.+|-++ |.. +.+..-+ |+..||..|.. +..||-|.
T Consensus 153 fiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 667777642 222 2344445 99999999965 26799994
No 118
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=1 Score=38.87 Aligned_cols=35 Identities=26% Similarity=0.587 Sum_probs=30.0
Q ss_pred CccccccccccccCCCccEEeCCCCccchhhHHHHhc
Q 031191 97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS 133 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~ 133 (164)
...+|.||.+.+.. ....+.|+|.|+..|....+.
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhh
Confidence 34799999999987 566778999999999999884
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=77.93 E-value=2.3 Score=25.30 Aligned_cols=41 Identities=20% Similarity=0.509 Sum_probs=18.4
Q ss_pred ccccccccccCCCccEEeC-CCCccchhhHHHHhcC-----CCCCcccCcc
Q 031191 100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH-----QSSCPLCRFQ 144 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~-----~~~CP~CR~~ 144 (164)
.|+|-...+.. ++... |.|.-+.+ +..||.. .-.||+|.++
T Consensus 4 ~CPls~~~i~~---P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI---PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS---EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe---CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 57777777766 55554 99975433 3455532 2369999763
No 120
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.20 E-value=1.3 Score=38.24 Aligned_cols=32 Identities=25% Similarity=0.581 Sum_probs=28.7
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHh
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL 132 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl 132 (164)
+-.|+||-.=|.+ +++|||+|..|.-|...-+
T Consensus 4 elkc~vc~~f~~e---piil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 4 ELKCPVCGSFYRE---PIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccCceehhhccC---ceEeecccHHHHHHHHhhc
Confidence 3579999999999 9999999999999988765
No 121
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=75.93 E-value=2.5 Score=25.46 Aligned_cols=41 Identities=22% Similarity=0.608 Sum_probs=20.7
Q ss_pred cccccccccCCC------ccEEeC-CCCccchhhHHHHh-cCCCCCcccC
Q 031191 101 CAICKDEFSLHS------EAKQLP-CNHLYHSECILPCL-SHQSSCPLCR 142 (164)
Q Consensus 101 C~ICl~~~~~~~------~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP~CR 142 (164)
|.-|+..|..+. ....-| |++.|+.+| +-.. +.=..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 556777777652 233445 999999999 3332 3445799883
No 122
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.02 E-value=0.92 Score=40.46 Aligned_cols=40 Identities=23% Similarity=0.717 Sum_probs=25.2
Q ss_pred ccccccc-----ccccCCCccEEeCCCCccchhhHHHHhcCCCCCccc
Q 031191 99 ESCAICK-----DEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLC 141 (164)
Q Consensus 99 ~~C~ICl-----~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~C 141 (164)
.-|.+|. .+|......+...|++.||..|... .+.-||.|
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 6677772 1222222234455999999999655 44459999
No 124
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=74.56 E-value=6.9 Score=24.01 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=34.9
Q ss_pred cccccccccccCCC-ccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHS-EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~-~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|-.|-.++..+. ...+-.-...|+..|...-| +..||-|-..+...
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 35777777777665 34444446789999999965 78899998877543
No 125
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.92 E-value=1.3 Score=40.70 Aligned_cols=42 Identities=24% Similarity=0.587 Sum_probs=31.2
Q ss_pred cccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCccc
Q 031191 99 ESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLC 141 (164)
Q Consensus 99 ~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~C 141 (164)
..|.-|++..... +.++++.|+|.||+.|+..-+.++. |-.|
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 5899999887643 3577888999999999977664443 4444
No 126
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=72.87 E-value=4.3 Score=21.66 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=23.1
Q ss_pred cccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccC
Q 031191 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
|..|-+.+..++..... =+..||..| ..|..|+..+
T Consensus 2 C~~C~~~i~~~~~~~~~-~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA-LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe-CCccccccC--------CCCcccCCcC
Confidence 77788887775333222 467888877 3477776655
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.36 E-value=1.9 Score=36.62 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=31.7
Q ss_pred cccccccccccCCCccEEe--CCCCccchhhHHHHhcCCCCCccc
Q 031191 99 ESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCLSHQSSCPLC 141 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl~~~~~CP~C 141 (164)
..|+.|.-.+.....-..+ .|+|.|+..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 6788888766554443333 389999999999998877777554
No 128
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.32 E-value=4.9 Score=28.23 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=31.8
Q ss_pred cccccccccccCCC----------ccEEeC-CCCccchhhHHHHhcCCCCCcccC
Q 031191 99 ESCAICKDEFSLHS----------EAKQLP-CNHLYHSECILPCLSHQSSCPLCR 142 (164)
Q Consensus 99 ~~C~ICl~~~~~~~----------~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR 142 (164)
..|.-|+..|.... ....-+ |++.|+.+|=.-+-+.=..||.|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999887531 122234 999999999776666667899995
No 129
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.63 E-value=1.5 Score=39.61 Aligned_cols=42 Identities=29% Similarity=0.624 Sum_probs=32.1
Q ss_pred cccccccccccCCC-ccEEeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191 99 ESCAICKDEFSLHS-EAKQLPCNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~-~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
..|.||+..|.... .++.+-|||..|..|+..- .+.+|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 57999998887644 3455669999999999885 567788 544
No 130
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=70.35 E-value=1.8 Score=25.26 Aligned_cols=42 Identities=31% Similarity=0.648 Sum_probs=26.7
Q ss_pred cccccccccCCCccEEeCCCCccchhhHHHHhc------CCCCCcccC
Q 031191 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLS------HQSSCPLCR 142 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~------~~~~CP~CR 142 (164)
|.||...-..++.+.--.|+..||..|+..=.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 788988433333333334999999999865432 234677774
No 131
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=69.34 E-value=1.7 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=13.0
Q ss_pred ecCCCCCCCCCcchhH
Q 031191 13 TLPLQEVLCPQWQTHF 28 (164)
Q Consensus 13 ~~~~~~~~Cp~C~~~~ 28 (164)
+++.....||.|+..|
T Consensus 9 ~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 9 EVPESAKFCPHCGYDF 24 (26)
T ss_pred CchhhcCcCCCCCCCC
Confidence 5677888899998877
No 132
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=67.24 E-value=3.9 Score=34.02 Aligned_cols=44 Identities=18% Similarity=0.492 Sum_probs=32.6
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCR 142 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR 142 (164)
..|-.|.++...+...+.-.|++.||.+|=.--=+.=..||.|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 56999988887766666666999999999433223445799996
No 133
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.95 E-value=4 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=28.8
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHh
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL 132 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl 132 (164)
.-|+.||.++.+ +++.|=||+|+++||.+.+
T Consensus 44 dcCsLtLqPc~d---Pvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRD---PVITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccC---CccCCCCeeeeHHHHHHHH
Confidence 689999999999 9899999999999998876
No 134
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=64.11 E-value=3.6 Score=25.71 Aligned_cols=35 Identities=26% Similarity=0.593 Sum_probs=18.6
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHh
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL 132 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl 132 (164)
...|.+|...|..-..--.-. ||++|+..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 378999999997644333444 99999999987654
No 135
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=60.98 E-value=4.8 Score=25.53 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=8.7
Q ss_pred ccchhhHHHHhc
Q 031191 122 LYHSECILPCLS 133 (164)
Q Consensus 122 ~Fh~~CI~~Wl~ 133 (164)
.||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=60.57 E-value=7.6 Score=32.25 Aligned_cols=48 Identities=25% Similarity=0.516 Sum_probs=36.3
Q ss_pred cccccccccccCCCc-cEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|+||-+.....+. ..-.||++.-|..|+..-...+.+||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 789999998744332 223447888888888888888999999997653
No 137
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=60.52 E-value=8.4 Score=22.77 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=25.1
Q ss_pred cccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
|.-|-..+..++.++ ..-+..||..| ..|-.|+..+....
T Consensus 1 C~~C~~~I~~~~~~~-~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVI-KAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEE-EETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEE-EeCCcEEEccc--------cccCCCCCccCCCe
Confidence 566777777544332 23677888776 45788887775543
No 138
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.82 E-value=11 Score=30.41 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=35.6
Q ss_pred cccccccccccCCCccEE-eCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQ-LPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
..|+|=--++........ .+|||+|-..-+++- ...+|++|-..+...+
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 678886666665444434 459999998887774 4678999998876554
No 139
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=57.44 E-value=2.3 Score=34.75 Aligned_cols=37 Identities=19% Similarity=0.448 Sum_probs=31.7
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ 135 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~ 135 (164)
..|.+|+++|..+.......|...||..|+..|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 5999999999987777777777799999999999544
No 140
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=4.6 Score=33.01 Aligned_cols=36 Identities=19% Similarity=0.429 Sum_probs=27.9
Q ss_pred cccccccccccCCCccEEeC--CCCccchhhHHHHhcCC
Q 031191 99 ESCAICKDEFSLHSEAKQLP--CNHLYHSECILPCLSHQ 135 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp--C~H~Fh~~CI~~Wl~~~ 135 (164)
-.|.+|.|.+++...+ ..| =.|.||..|-.+-+|++
T Consensus 269 LcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred eeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhh
Confidence 7899999999984443 223 37999999999888654
No 141
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=56.63 E-value=11 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=22.7
Q ss_pred ccccccccccccCCCccEEeC--CCCccchhhHHHH
Q 031191 98 QESCAICKDEFSLHSEAKQLP--CNHLYHSECILPC 131 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp--C~H~Fh~~CI~~W 131 (164)
...|.||... .|..+.-.. |...||..|...+
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4699999998 333333333 8889999998663
No 142
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=55.62 E-value=5.1 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.8
Q ss_pred CCCCCCcchhHHhhhcCCCCCCCCh
Q 031191 18 EVLCPQWQTHFLEHMESINPDSPNQ 42 (164)
Q Consensus 18 ~~~Cp~C~~~~le~~~~~~p~~~~~ 42 (164)
.+-||.|+.+.++.+..++--|++|
T Consensus 15 tLPC~~Cr~HA~~ai~kNNiMSs~D 39 (70)
T PF04805_consen 15 TLPCPECRIHAKEAIQKNNIMSSND 39 (70)
T ss_pred cCCCHHHHHHHHHHHHhcCccccCC
Confidence 4559999999999999988888777
No 143
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=54.94 E-value=9.2 Score=22.69 Aligned_cols=34 Identities=24% Similarity=0.590 Sum_probs=25.4
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHh
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL 132 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl 132 (164)
..|.+|-..|........-. ||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 47889998888754444444 99999999987654
No 144
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=54.84 E-value=6.7 Score=35.04 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=25.3
Q ss_pred CCccccccccccccCC----C------ccEEeCCCCccchhhHHHH
Q 031191 96 LSQESCAICKDEFSLH----S------EAKQLPCNHLYHSECILPC 131 (164)
Q Consensus 96 ~~~~~C~ICl~~~~~~----~------~~~~lpC~H~Fh~~CI~~W 131 (164)
.....|+||.|.|..- + ..+.+.=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 4458999999999751 1 1233446889999998663
No 145
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.62 E-value=12 Score=31.15 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=36.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCC---CCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ---SSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~---~~CP~CR~ 143 (164)
..|++=-+.-.+...+..|.|||+.-.+-+..--+.. ..||.|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 8899988888888889999999999998888755433 35999943
No 146
>PRK05978 hypothetical protein; Provisional
Probab=52.92 E-value=11 Score=27.70 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCccchhhHHHHhcCCCCCcccCccCCCCCCCCcc
Q 031191 120 NHLYHSECILPCLSHQSSCPLCRFQLPMINPSNVV 154 (164)
Q Consensus 120 ~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~~~ 154 (164)
|+.|+ .+|+.+..||.|-.++........+
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~a~Dgp 71 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHRADDLP 71 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCCccccC
Confidence 47775 7889999999999888766554433
No 147
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=52.80 E-value=7.3 Score=21.53 Aligned_cols=25 Identities=24% Similarity=0.873 Sum_probs=14.2
Q ss_pred ccccccccccCCCc-------cEEeC-CCCccc
Q 031191 100 SCAICKDEFSLHSE-------AKQLP-CNHLYH 124 (164)
Q Consensus 100 ~C~ICl~~~~~~~~-------~~~lp-C~H~Fh 124 (164)
.|+-|...|...+. .+.-+ |+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777765432 22233 777774
No 148
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.13 E-value=2.3 Score=34.41 Aligned_cols=46 Identities=28% Similarity=0.570 Sum_probs=37.2
Q ss_pred cccccccccccCC---CccEEeC--------CCCccchhhHHHHhc-CCCCCcccCcc
Q 031191 99 ESCAICKDEFSLH---SEAKQLP--------CNHLYHSECILPCLS-HQSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~---~~~~~lp--------C~H~Fh~~CI~~Wl~-~~~~CP~CR~~ 144 (164)
..|.||...|... ..++++. |+|..+..|+..-+. ....||.||..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 7899999999843 3456677 999999999999874 34689999874
No 149
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.44 E-value=19 Score=23.63 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=20.3
Q ss_pred ccccccccccccCCCc----cEEeCCCCccchhhHHHHh-cCCCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSE----AKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~----~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~ 146 (164)
...|.||=+++..... +....|+--.|+.|..-=. ..+..||-|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3689999998865332 2233488888999985544 56778999998764
No 150
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=48.13 E-value=7.3 Score=35.63 Aligned_cols=48 Identities=21% Similarity=0.670 Sum_probs=31.8
Q ss_pred ccccccccccccCCC--ccEEeC-----CCCccchhhHHHH--h--------cCCCCCcccCccC
Q 031191 98 QESCAICKDEFSLHS--EAKQLP-----CNHLYHSECILPC--L--------SHQSSCPLCRFQL 145 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~--~~~~lp-----C~H~Fh~~CI~~W--l--------~~~~~CP~CR~~v 145 (164)
..+|.||-|+=...+ +...|. |+..||..|...- | ..-+.|-+|+.-+
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 468999999855433 233343 6789999998652 1 2235799997643
No 152
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=47.58 E-value=11 Score=19.57 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=9.7
Q ss_pred ccccccccccCCCccEEeCCCCccchhhH
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSECI 128 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI 128 (164)
.|.+|......+..-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57778777665222333458888898885
No 153
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=46.12 E-value=7 Score=23.36 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=7.1
Q ss_pred CCCCcccCccCCCC
Q 031191 135 QSSCPLCRFQLPMI 148 (164)
Q Consensus 135 ~~~CP~CR~~v~~~ 148 (164)
+..||+|.+++...
T Consensus 20 ~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 20 KGCCPLCGRPLDEE 33 (54)
T ss_dssp SEE-TTT--EE-HH
T ss_pred CCcCCCCCCCCCHH
Confidence 34899999887543
No 154
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=45.75 E-value=15 Score=22.79 Aligned_cols=12 Identities=50% Similarity=1.104 Sum_probs=8.7
Q ss_pred CCCCcccCccCC
Q 031191 135 QSSCPLCRFQLP 146 (164)
Q Consensus 135 ~~~CP~CR~~v~ 146 (164)
+..||+|+..+.
T Consensus 2 k~~CPlCkt~~n 13 (61)
T PF05715_consen 2 KSLCPLCKTTLN 13 (61)
T ss_pred CccCCcccchhh
Confidence 457888888773
No 155
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=44.84 E-value=6.4 Score=23.74 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=15.3
Q ss_pred CccEEeC-CCCccchhhHHHH
Q 031191 112 SEAKQLP-CNHLYHSECILPC 131 (164)
Q Consensus 112 ~~~~~lp-C~H~Fh~~CI~~W 131 (164)
...+.-+ |++.|+..|-..|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 3445554 9999999998888
No 156
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.28 E-value=17 Score=33.14 Aligned_cols=45 Identities=27% Similarity=0.625 Sum_probs=34.8
Q ss_pred ccccccccccCCCccEEeCCCC-ccchhhHHHHh--cC----CCCCcccCccCCC
Q 031191 100 SCAICKDEFSLHSEAKQLPCNH-LYHSECILPCL--SH----QSSCPLCRFQLPM 147 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl--~~----~~~CP~CR~~v~~ 147 (164)
.|+||-..+.. +..-.|+| .-+..|..+-. .. .+.||+||..+..
T Consensus 2 ~c~ic~~s~~~---~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccc---cccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 58999988776 66667999 99999998866 22 4568999986643
No 157
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=41.44 E-value=12 Score=20.63 Aligned_cols=25 Identities=20% Similarity=0.792 Sum_probs=14.2
Q ss_pred ccccccccccCCCc--------cEEeCCCCccc
Q 031191 100 SCAICKDEFSLHSE--------AKQLPCNHLYH 124 (164)
Q Consensus 100 ~C~ICl~~~~~~~~--------~~~lpC~H~Fh 124 (164)
+|+=|...|...+. ++--.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57777777765433 22223777774
No 158
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=40.95 E-value=11 Score=21.11 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=10.2
Q ss_pred CcccCccCCCCCCCCccccc
Q 031191 138 CPLCRFQLPMINPSNVVSWA 157 (164)
Q Consensus 138 CP~CR~~v~~~~~~~~~~~~ 157 (164)
||.|+..+.......+.+..
T Consensus 2 CP~C~~~l~~~~~~~~~id~ 21 (41)
T PF13453_consen 2 CPRCGTELEPVRLGDVEIDV 21 (41)
T ss_pred cCCCCcccceEEECCEEEEE
Confidence 66666655544444433333
No 159
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=40.09 E-value=11 Score=18.95 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=10.1
Q ss_pred CCCCCCcchhHHh
Q 031191 18 EVLCPQWQTHFLE 30 (164)
Q Consensus 18 ~~~Cp~C~~~~le 30 (164)
-..||.|+..|..
T Consensus 2 l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 2 LVPCPICGRKFNP 14 (25)
T ss_pred CCcCCCCCCEECH
Confidence 3579999998843
No 160
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=39.86 E-value=3.2 Score=26.69 Aligned_cols=40 Identities=23% Similarity=0.581 Sum_probs=20.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|+.|..++.... +|.++..|-.. ++....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 36888888765533 55555666443 355677888887764
No 161
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.71 E-value=8.1 Score=22.99 Aligned_cols=13 Identities=38% Similarity=0.835 Sum_probs=10.7
Q ss_pred CCCCCCCCcchhH
Q 031191 16 LQEVLCPQWQTHF 28 (164)
Q Consensus 16 ~~~~~Cp~C~~~~ 28 (164)
+..-+||+|+..|
T Consensus 10 lp~KICpvCqRPF 22 (54)
T COG4338 10 LPDKICPVCQRPF 22 (54)
T ss_pred cchhhhhhhcCch
Confidence 4567899999888
No 162
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=9.1 Score=31.51 Aligned_cols=47 Identities=21% Similarity=0.611 Sum_probs=37.6
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|-||...+.. ...-. |.|.|+..|-..|....+.||.||.-..+.
T Consensus 106 ~~~~~~~g~l~v---pt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 106 DICYICYGKLTV---PTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred cceeeeeeeEEe---cccccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 689999888776 33333 999999999999999999999998755443
No 163
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=39.51 E-value=23 Score=21.06 Aligned_cols=29 Identities=10% Similarity=0.306 Sum_probs=19.5
Q ss_pred eeEEEEEeeeeecCCCCCCCCCcchhHHh
Q 031191 2 SVSLVFSTTVTTLPLQEVLCPQWQTHFLE 30 (164)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~Cp~C~~~~le 30 (164)
++-.-+.+...++....-.||.|+..|+.
T Consensus 4 ~~~~~y~v~~~~v~~~~~fCP~Cg~~~m~ 32 (50)
T PRK00432 4 AKREYYEVDGGKVKRKNKFCPRCGSGFMA 32 (50)
T ss_pred ceeeeEEECCCEEEEccCcCcCCCcchhe
Confidence 34445556666666777799999987443
No 164
>KOG4602 consensus Nanos and related proteins [General function prediction only]
Probab=39.36 E-value=10 Score=30.57 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=14.9
Q ss_pred eeeecCCCCCCCCCcchhH
Q 031191 10 TVTTLPLQEVLCPQWQTHF 28 (164)
Q Consensus 10 ~~~~~~~~~~~Cp~C~~~~ 28 (164)
+|--+.|++|+||+|++.-
T Consensus 260 RVLCPkLR~YVCPiCGATg 278 (318)
T KOG4602|consen 260 RVLCPKLRSYVCPICGATG 278 (318)
T ss_pred cEechhHhhhcCccccccC
Confidence 4456789999999999753
No 165
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=39.36 E-value=25 Score=24.26 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=18.7
Q ss_pred CCccchhhHHHHhcCC---------CCCcccCc
Q 031191 120 NHLYHSECILPCLSHQ---------SSCPLCRF 143 (164)
Q Consensus 120 ~H~Fh~~CI~~Wl~~~---------~~CP~CR~ 143 (164)
.-.|+..||..++..+ -.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 7789999998888432 35999976
No 166
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.09 E-value=19 Score=19.28 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=7.0
Q ss_pred CCCCCcccCc
Q 031191 134 HQSSCPLCRF 143 (164)
Q Consensus 134 ~~~~CP~CR~ 143 (164)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3447999965
No 167
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=37.73 E-value=15 Score=24.70 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=24.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|.-|...+.--|.+ | |-.|+..+..|..|++++..
T Consensus 34 S~C~~C~~~L~~~~lI---P---------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLI---P---------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccccc---h---------HHHHHHhCCCCcccCCCCCh
Confidence 5666666665552222 1 56788888888888887743
No 168
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=37.09 E-value=73 Score=19.56 Aligned_cols=45 Identities=16% Similarity=0.360 Sum_probs=30.0
Q ss_pred hCCceeeccCCCccccccccccccC--CCccEEeC-CCCccchhhHHH
Q 031191 86 RMNSVEISESLSQESCAICKDEFSL--HSEAKQLP-CNHLYHSECILP 130 (164)
Q Consensus 86 ~lp~~~~~~~~~~~~C~ICl~~~~~--~~~~~~lp-C~H~Fh~~CI~~ 130 (164)
..+...+.+......|+.|-..... ......-| ||+.+|++-...
T Consensus 16 G~~v~~v~~~~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 16 GIQVVEVDEAYTSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred CCEEEEECCCCCccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 3444555555555799999988877 44455556 888888875544
No 169
>PHA03005 sulfhydryl oxidase; Provisional
Probab=37.08 E-value=17 Score=24.65 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCCCCCCcchhHHhhhcCCCCCCCCh
Q 031191 16 LQEVLCPQWQTHFLEHMESINPDSPNQ 42 (164)
Q Consensus 16 ~~~~~Cp~C~~~~le~~~~~~p~~~~~ 42 (164)
.+.+=||.|+.+.++.+..++--|++|
T Consensus 38 ~~tLPC~~Cr~HA~~ai~knnimSs~d 64 (96)
T PHA03005 38 CSTLPCPACRRHAKEAIEKNNIMSSND 64 (96)
T ss_pred hhcCCCHHHHHHHHHHHhhcCccccCC
Confidence 345679999999999999988877777
No 170
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=37.00 E-value=22 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.720 Sum_probs=13.6
Q ss_pred CCCccchhhHHHHhcCCCCCccc
Q 031191 119 CNHLYHSECILPCLSHQSSCPLC 141 (164)
Q Consensus 119 C~H~Fh~~CI~~Wl~~~~~CP~C 141 (164)
|+|.|-.. |..-......||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 67777543 33323567789987
No 171
>PRK11827 hypothetical protein; Provisional
Probab=36.77 E-value=13 Score=23.20 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=12.6
Q ss_pred HHhcCCCCCcccCccCCCC
Q 031191 130 PCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 130 ~Wl~~~~~CP~CR~~v~~~ 148 (164)
+||..--.||+|+.++.-.
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 4555566788888877543
No 172
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.51 E-value=11 Score=32.56 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=27.5
Q ss_pred cccccccccccCCCccE-----EeCCCCccchhhHHHHhcC
Q 031191 99 ESCAICKDEFSLHSEAK-----QLPCNHLYHSECILPCLSH 134 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~-----~lpC~H~Fh~~CI~~Wl~~ 134 (164)
..|+.|...+..+..-- ..+|+|.||..|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 56999999988765322 2249999999999999754
No 173
>PLN02189 cellulose synthase
Probab=36.33 E-value=40 Score=32.43 Aligned_cols=48 Identities=23% Similarity=0.462 Sum_probs=35.0
Q ss_pred cccccccccccC---CCccEEeC-CCCccchhhHHHHh-cCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSL---HSEAKQLP-CNHLYHSECILPCL-SHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~---~~~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~ 146 (164)
..|.||-+++.. |+.-+-.. |+--.|+.|..-=. +.+..||-|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 689999999863 33333444 88888999984333 56678999998775
No 174
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=35.93 E-value=33 Score=28.59 Aligned_cols=41 Identities=10% Similarity=-0.086 Sum_probs=31.6
Q ss_pred cccccccccccCCCccEEeCCCC-ccchhhHHHHhcCCCCCcccCcc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNH-LYHSECILPCLSHQSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H-~Fh~~CI~~Wl~~~~~CP~CR~~ 144 (164)
.+|..|-+.... ....+|+| .|+.+|.. +....+||+|...
T Consensus 344 ~~~~~~~~~~~s---t~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 344 LKGTSAGFGLLS---TIWSGGNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred cccccccCceee---eEeecCCcccChhhhhh--cccCCcccccccc
Confidence 677777766655 66778987 89999977 6778899999653
No 175
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.18 E-value=39 Score=23.08 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=29.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS 133 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~ 133 (164)
-.|.||-..+..|++..-.+ .-..|.+|+..-.+
T Consensus 7 wkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 58999999999999988888 77899999987553
No 176
>PHA00626 hypothetical protein
Probab=35.00 E-value=14 Score=22.68 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=15.1
Q ss_pred CCCCCCCCCcchhHHhhhc
Q 031191 15 PLQEVLCPQWQTHFLEHME 33 (164)
Q Consensus 15 ~~~~~~Cp~C~~~~le~~~ 33 (164)
+.++|.||.|+..|-...-
T Consensus 20 ~snrYkCkdCGY~ft~~~~ 38 (59)
T PHA00626 20 WSDDYVCCDCGYNDSKDAF 38 (59)
T ss_pred cCcceEcCCCCCeechhhh
Confidence 4689999999999865544
No 177
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.03 E-value=17 Score=24.55 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=10.7
Q ss_pred ccchhhHHHHhc
Q 031191 122 LYHSECILPCLS 133 (164)
Q Consensus 122 ~Fh~~CI~~Wl~ 133 (164)
.||+.|+..|++
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 178
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=33.90 E-value=6 Score=19.95 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.8
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.||.|+..|
T Consensus 13 k~~~C~~C~k~F 24 (26)
T PF13465_consen 13 KPYKCPYCGKSF 24 (26)
T ss_dssp SSEEESSSSEEE
T ss_pred CCCCCCCCcCee
Confidence 458899999876
No 179
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=33.49 E-value=5.5 Score=18.99 Aligned_cols=9 Identities=33% Similarity=0.740 Sum_probs=7.1
Q ss_pred CCCCcchhH
Q 031191 20 LCPQWQTHF 28 (164)
Q Consensus 20 ~Cp~C~~~~ 28 (164)
.|+.|+..|
T Consensus 2 ~C~~C~~~f 10 (23)
T PF00096_consen 2 KCPICGKSF 10 (23)
T ss_dssp EETTTTEEE
T ss_pred CCCCCCCcc
Confidence 588888877
No 180
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=33.22 E-value=29 Score=27.57 Aligned_cols=26 Identities=23% Similarity=0.599 Sum_probs=19.0
Q ss_pred cccccccccccCCCccEEeCCCCccc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYH 124 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh 124 (164)
..|++|...+...+.....+.+|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCCc
Confidence 36999999997765544445688883
No 181
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=32.49 E-value=25 Score=20.82 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.3
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.||+|...+
T Consensus 30 ~~v~CPiC~~~~ 41 (54)
T PF05605_consen 30 KNVVCPICSSRV 41 (54)
T ss_pred CCccCCCchhhh
Confidence 468999998744
No 182
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.48 E-value=29 Score=21.48 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=12.6
Q ss_pred CCCCCcccCccCCCCC
Q 031191 134 HQSSCPLCRFQLPMIN 149 (164)
Q Consensus 134 ~~~~CP~CR~~v~~~~ 149 (164)
.++.||+|-.+++++.
T Consensus 2 ~HkHC~~CG~~Ip~~~ 17 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPDE 17 (59)
T ss_pred CCCcCCcCCCcCCcch
Confidence 4678999998887653
No 183
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=32.15 E-value=21 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=21.0
Q ss_pred cccccccccccCCCccEE-e-CCCCccchhhHHH
Q 031191 99 ESCAICKDEFSLHSEAKQ-L-PCNHLYHSECILP 130 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~-l-pC~H~Fh~~CI~~ 130 (164)
..|.+|-... |..+.- . .|...||..|...
T Consensus 37 ~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 5899999772 322322 2 3999999999765
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=32.15 E-value=33 Score=31.93 Aligned_cols=43 Identities=28% Similarity=0.603 Sum_probs=28.5
Q ss_pred cccccccccccC----C----CccE-EeC-CCCccchhhHHHHhcCCCCCcccCccC
Q 031191 99 ESCAICKDEFSL----H----SEAK-QLP-CNHLYHSECILPCLSHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~----~----~~~~-~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v 145 (164)
..|+-|...|.. | +... ..| |+|.-|.+=|.+ .+.||+|...+
T Consensus 1132 ~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1132 LQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 577777777643 1 1122 335 999998876654 68899997654
No 185
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=31.94 E-value=21 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=15.2
Q ss_pred CCCcccCccCCCCCCCCcccccccC
Q 031191 136 SSCPLCRFQLPMINPSNVVSWACSS 160 (164)
Q Consensus 136 ~~CP~CR~~v~~~~~~~~~~~~~~~ 160 (164)
..||.|...+.....-...-|+||+
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~ 26 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSN 26 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCC
Confidence 3588887766555444445566665
No 186
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.75 E-value=4.9 Score=32.60 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=20.0
Q ss_pred cccccccccccCCCccEEe--CCCCccchhhHHHHhcCCCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
..|+||=.....+.-...- -=.+.+|.-|-..|--....||.|-.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 6999998765431100000 01345777788889878889999954
No 187
>PLN02436 cellulose synthase A
Probab=31.37 E-value=46 Score=32.18 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=35.0
Q ss_pred ccccccccccc---CCCccEEeC-CCCccchhhHHHHh-cCCCCCcccCccCC
Q 031191 99 ESCAICKDEFS---LHSEAKQLP-CNHLYHSECILPCL-SHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~---~~~~~~~lp-C~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~ 146 (164)
..|.||-+++. +|+--+-.. |+--.|+.|..-=. +.+..||-|++...
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 58999999974 344444444 88889999984433 45678999998775
No 188
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=31.05 E-value=41 Score=23.36 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=9.9
Q ss_pred CCCcccCccCCCC
Q 031191 136 SSCPLCRFQLPMI 148 (164)
Q Consensus 136 ~~CP~CR~~v~~~ 148 (164)
.+||.|-..+...
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 4699998877665
No 189
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.88 E-value=23 Score=20.37 Aligned_cols=14 Identities=29% Similarity=0.607 Sum_probs=11.2
Q ss_pred CCCCCCCCCcchhH
Q 031191 15 PLQEVLCPQWQTHF 28 (164)
Q Consensus 15 ~~~~~~Cp~C~~~~ 28 (164)
-+++-+|++|+..|
T Consensus 5 ~lp~K~C~~C~rpf 18 (42)
T PF10013_consen 5 NLPSKICPVCGRPF 18 (42)
T ss_pred cCCCCcCcccCCcc
Confidence 35678899999887
No 190
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=30.83 E-value=18 Score=22.13 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=7.7
Q ss_pred eeecCCCCCCCCCcchh
Q 031191 11 VTTLPLQEVLCPQWQTH 27 (164)
Q Consensus 11 ~~~~~~~~~~Cp~C~~~ 27 (164)
|+=+.|+.+.||+|++.
T Consensus 26 v~CPvLr~y~Cp~CgAt 42 (55)
T PF05741_consen 26 VTCPVLRKYVCPICGAT 42 (55)
T ss_dssp B--TTGGG---TTT---
T ss_pred EeCHHHhcCcCCCCcCc
Confidence 55677899999999874
No 191
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=30.79 E-value=62 Score=18.19 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=11.6
Q ss_pred EEeeeeecCCCCCCCCCcch
Q 031191 7 FSTTVTTLPLQEVLCPQWQT 26 (164)
Q Consensus 7 ~~~~~~~~~~~~~~Cp~C~~ 26 (164)
|-++.+.--.....||.|+.
T Consensus 15 fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 15 FEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred EEEEEEcCCCCCCcCCCCCC
Confidence 33344333366777888876
No 192
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=30.47 E-value=21 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=24.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHH
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECIL 129 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~ 129 (164)
..|.||..+....+.+..=-|...||.-|+.
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred HhhhccCCcccchheeccccccCCCCccccc
Confidence 7899999988776665544498899999984
No 193
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=30.39 E-value=33 Score=21.28 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=13.3
Q ss_pred CCCCCcccCccCCCCCC
Q 031191 134 HQSSCPLCRFQLPMINP 150 (164)
Q Consensus 134 ~~~~CP~CR~~v~~~~~ 150 (164)
-++.||+|-+.++++..
T Consensus 7 PH~HC~VCg~aIp~de~ 23 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CCccccccCCcCCCccc
Confidence 35679999999988754
No 194
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.99 E-value=25 Score=17.84 Aligned_cols=9 Identities=33% Similarity=1.098 Sum_probs=7.1
Q ss_pred CCcccCccC
Q 031191 137 SCPLCRFQL 145 (164)
Q Consensus 137 ~CP~CR~~v 145 (164)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 699997766
No 195
>PF05353 Atracotoxin: Delta Atracotoxin; InterPro: IPR008017 Delta atracotoxin produces potentially fatal neurotoxic symptoms in primates by slowing the inactivation of voltage-gated sodium channels []. The structure of atracotoxin comprises a core beta region containing a triple-stranded a thumb-like extension protruding from the beta region and a C-terminal helix. The beta region contains a cystine knot motif, a feature seen in other neurotoxic polypeptides [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2ROO_A 1VTX_A 1QDP_A.
Probab=29.81 E-value=3.8 Score=23.24 Aligned_cols=14 Identities=43% Similarity=0.868 Sum_probs=10.7
Q ss_pred hhHHHHhcCCCCCc
Q 031191 126 ECILPCLSHQSSCP 139 (164)
Q Consensus 126 ~CI~~Wl~~~~~CP 139 (164)
.||..|++++.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (42)
T PF05353_consen 19 KCIYAWYNQQSSCQ 32 (42)
T ss_dssp EEEE-SSGSTEEEE
T ss_pred HHHHHHHccCCchH
Confidence 68999999888873
No 196
>PHA00616 hypothetical protein
Probab=29.62 E-value=28 Score=20.25 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=10.0
Q ss_pred CCCCCcchhHHh
Q 031191 19 VLCPQWQTHFLE 30 (164)
Q Consensus 19 ~~Cp~C~~~~le 30 (164)
+.||.|+..|..
T Consensus 2 YqC~~CG~~F~~ 13 (44)
T PHA00616 2 YQCLRCGGIFRK 13 (44)
T ss_pred CccchhhHHHhh
Confidence 679999999954
No 197
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=28.47 E-value=30 Score=24.17 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=21.4
Q ss_pred ccccccccccccC--CCccEEeCCCCccchhhHHH
Q 031191 98 QESCAICKDEFSL--HSEAKQLPCNHLYHSECILP 130 (164)
Q Consensus 98 ~~~C~ICl~~~~~--~~~~~~lpC~H~Fh~~CI~~ 130 (164)
...|.+|...|.- +-......|+|.+|..|-..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 3699999998754 22344445999999998543
No 198
>PF15616 TerY-C: TerY-C metal binding domain
Probab=27.91 E-value=42 Score=24.23 Aligned_cols=43 Identities=19% Similarity=0.529 Sum_probs=29.4
Q ss_pred CCCccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 95 SLSQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 95 ~~~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
......|+-|-..+.- + .-.|+++||. .. ....+||.|-+...
T Consensus 74 L~g~PgCP~CGn~~~f---a-~C~CGkl~Ci---~g--~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAF---A-VCGCGKLFCI---DG--EGEVTCPWCGNEGS 116 (131)
T ss_pred hcCCCCCCCCcChhcE---E-EecCCCEEEe---CC--CCCEECCCCCCeee
Confidence 3344789999877654 3 3369999873 33 45679999977653
No 199
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.79 E-value=57 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=15.4
Q ss_pred HHhcCCCCCcccCccCCCCCCC
Q 031191 130 PCLSHQSSCPLCRFQLPMINPS 151 (164)
Q Consensus 130 ~Wl~~~~~CP~CR~~v~~~~~~ 151 (164)
+-+.+...|+.|++++.-+...
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~l 101 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSL 101 (114)
T ss_pred hhhchhhccCcCCCcCccCchh
Confidence 3455556899999998666443
No 200
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.50 E-value=74 Score=17.19 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=7.2
Q ss_pred CCCCCCCCcch
Q 031191 16 LQEVLCPQWQT 26 (164)
Q Consensus 16 ~~~~~Cp~C~~ 26 (164)
.....||.|+.
T Consensus 24 ~~~~~CP~Cg~ 34 (41)
T smart00834 24 DPLATCPECGG 34 (41)
T ss_pred CCCCCCCCCCC
Confidence 45566777776
No 201
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=27.29 E-value=22 Score=30.03 Aligned_cols=46 Identities=30% Similarity=0.668 Sum_probs=25.5
Q ss_pred ccccccccccccCCCccEEeC---CCCccch--------hhHHHHh-----cCCCCCcccCcc
Q 031191 98 QESCAICKDEFSLHSEAKQLP---CNHLYHS--------ECILPCL-----SHQSSCPLCRFQ 144 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp---C~H~Fh~--------~CI~~Wl-----~~~~~CP~CR~~ 144 (164)
++.|++|-+....=.. ..|. |+-.|.+ .|+..-- ..++.||.||..
T Consensus 15 ~ElCPVCGDkVSGYHY-GLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHY-GLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccCcccccee-eeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 4799999887664222 2333 5544432 3433211 123579999864
No 202
>PRK01343 zinc-binding protein; Provisional
Probab=27.13 E-value=30 Score=21.27 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=13.1
Q ss_pred ecCCCCCCCCCcchhHH
Q 031191 13 TLPLQEVLCPQWQTHFL 29 (164)
Q Consensus 13 ~~~~~~~~Cp~C~~~~l 29 (164)
+..+....||+|++.+.
T Consensus 4 ~~~~p~~~CP~C~k~~~ 20 (57)
T PRK01343 4 EPLRPTRPCPECGKPST 20 (57)
T ss_pred ccCCCCCcCCCCCCcCc
Confidence 34556789999999874
No 203
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.97 E-value=33 Score=21.24 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=9.5
Q ss_pred CCCCcccCccCCC
Q 031191 135 QSSCPLCRFQLPM 147 (164)
Q Consensus 135 ~~~CP~CR~~v~~ 147 (164)
...||+|..+-..
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4689999886543
No 204
>smart00355 ZnF_C2H2 zinc finger.
Probab=26.69 E-value=34 Score=15.82 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=7.9
Q ss_pred CCCCCcchhHH
Q 031191 19 VLCPQWQTHFL 29 (164)
Q Consensus 19 ~~Cp~C~~~~l 29 (164)
+.|+.|+..|.
T Consensus 1 ~~C~~C~~~f~ 11 (26)
T smart00355 1 YRCPECGKVFK 11 (26)
T ss_pred CCCCCCcchhC
Confidence 35888887773
No 205
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.21 E-value=33 Score=21.46 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.1
Q ss_pred ecCCCCCCCCCcchhH
Q 031191 13 TLPLQEVLCPQWQTHF 28 (164)
Q Consensus 13 ~~~~~~~~Cp~C~~~~ 28 (164)
+-.-.++.||-|+++|
T Consensus 43 mg~~gev~CPYC~t~y 58 (62)
T COG4391 43 MGDEGEVVCPYCSTRY 58 (62)
T ss_pred cCCCCcEecCccccEE
Confidence 4566789999999987
No 206
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=26.17 E-value=73 Score=27.92 Aligned_cols=47 Identities=21% Similarity=0.486 Sum_probs=30.3
Q ss_pred ccccccccc-ccCCCccEEeC-CCCccchhhHHHHhcC--------CCCCcccCccC
Q 031191 99 ESCAICKDE-FSLHSEAKQLP-CNHLYHSECILPCLSH--------QSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~-~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~--------~~~CP~CR~~v 145 (164)
..|.+|... ...++.+.... |+.-||..|...-.+. .-.|-+|...-
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 669999944 33444444444 8899999998664321 12599996644
No 207
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=25.37 E-value=15 Score=19.03 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=5.7
Q ss_pred CCCcchhHHhhh
Q 031191 21 CPQWQTHFLEHM 32 (164)
Q Consensus 21 Cp~C~~~~le~~ 32 (164)
||.|++...+.-
T Consensus 2 CP~C~s~l~~~~ 13 (28)
T PF03119_consen 2 CPVCGSKLVREE 13 (28)
T ss_dssp -TTT--BEEE-C
T ss_pred cCCCCCEeEcCC
Confidence 888988876433
No 208
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=24.99 E-value=65 Score=18.60 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=22.6
Q ss_pred ccccccccccc--cCCCccEEeCCCCccchhhHHH
Q 031191 98 QESCAICKDEF--SLHSEAKQLPCNHLYHSECILP 130 (164)
Q Consensus 98 ~~~C~ICl~~~--~~~~~~~~lpC~H~Fh~~CI~~ 130 (164)
...|.+|-+.+ ...+..+-..|+-..|.+|+..
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 36899999998 3334444556999999999765
No 209
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.99 E-value=83 Score=30.55 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=34.1
Q ss_pred cccccccccccC---CCccEEeC-CCCccchhhHHH-HhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSL---HSEAKQLP-CNHLYHSECILP-CLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~---~~~~~~lp-C~H~Fh~~CI~~-Wl~~~~~CP~CR~~v~ 146 (164)
..|.||=+++.. |+--+-.. |+---|+.|-.- .-+.+..||-|++...
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 589999999764 33333333 888899999832 2256678999998765
No 210
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=24.78 E-value=40 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=18.5
Q ss_pred HHhcCCCCCcccCccCCCCCCCCcc
Q 031191 130 PCLSHQSSCPLCRFQLPMINPSNVV 154 (164)
Q Consensus 130 ~Wl~~~~~CP~CR~~v~~~~~~~~~ 154 (164)
.+|+.+..|+.|-.++...+....+
T Consensus 3 g~Lk~~~~C~~CG~d~~~~~adDgP 27 (86)
T PF06170_consen 3 GYLKVAPRCPHCGLDYSHARADDGP 27 (86)
T ss_pred ccccCCCcccccCCccccCCcCccc
Confidence 4678889999998888666555443
No 211
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=24.54 E-value=40 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=14.7
Q ss_pred hhhHHHHhc-CCCCCcccCccC
Q 031191 125 SECILPCLS-HQSSCPLCRFQL 145 (164)
Q Consensus 125 ~~CI~~Wl~-~~~~CP~CR~~v 145 (164)
+.||.+--. .++-||+||...
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 457776442 567899999864
No 212
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=23.22 E-value=61 Score=20.29 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=8.5
Q ss_pred CCCcccCccCC
Q 031191 136 SSCPLCRFQLP 146 (164)
Q Consensus 136 ~~CP~CR~~v~ 146 (164)
..||.|++.+.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 46999988764
No 213
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=38 Score=31.00 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=29.4
Q ss_pred ccccccccccc-CCCccEEeCCCCccchhhHHHHhcCCCCCccc
Q 031191 99 ESCAICKDEFS-LHSEAKQLPCNHLYHSECILPCLSHQSSCPLC 141 (164)
Q Consensus 99 ~~C~ICl~~~~-~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~C 141 (164)
..|-+|...=. .++..+.+.|+-.||..| |+...+.||+|
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC 695 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVC 695 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCccc
Confidence 68889986543 334456667999888877 66678889999
No 214
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=23.02 E-value=40 Score=27.18 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=30.2
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcC--CCCCccc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH--QSSCPLC 141 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~--~~~CP~C 141 (164)
..|+|=...+.. +++-. |+|+|-++=|...+.. ...||+=
T Consensus 177 ~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 177 NRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred ccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 688887777766 54444 9999999999999855 4467763
No 215
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.96 E-value=33 Score=20.14 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=8.2
Q ss_pred CCCCCCCCCcchh
Q 031191 15 PLQEVLCPQWQTH 27 (164)
Q Consensus 15 ~~~~~~Cp~C~~~ 27 (164)
.+....||+|+..
T Consensus 31 Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 31 LPDDWVCPVCGAP 43 (47)
T ss_dssp S-TT-B-TTTSSB
T ss_pred CCCCCcCcCCCCc
Confidence 4678899999876
No 216
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=22.66 E-value=24 Score=19.36 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=11.6
Q ss_pred EeCCCCccchhhHHHHhcCCCCCcccCc
Q 031191 116 QLPCNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 116 ~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
-..|+..| .++||..+..+++|..
T Consensus 6 C~eC~~~f----~dSyL~~~F~~~VCD~ 29 (34)
T PF01286_consen 6 CDECGKPF----MDSYLLNNFDLPVCDK 29 (34)
T ss_dssp -TTT--EE----S-SSCCCCTS-S--TT
T ss_pred HhHhCCHH----HHHHHHHhCCcccccc
Confidence 34577777 4578877877777743
No 217
>PHA02768 hypothetical protein; Provisional
Probab=22.50 E-value=27 Score=21.29 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=9.4
Q ss_pred CCCCCCcchhH
Q 031191 18 EVLCPQWQTHF 28 (164)
Q Consensus 18 ~~~Cp~C~~~~ 28 (164)
-+.||.|+..|
T Consensus 5 ~y~C~~CGK~F 15 (55)
T PHA02768 5 GYECPICGEIY 15 (55)
T ss_pred ccCcchhCCee
Confidence 46899999998
No 218
>PLN02248 cellulose synthase-like protein
Probab=22.49 E-value=73 Score=31.03 Aligned_cols=35 Identities=20% Similarity=0.553 Sum_probs=28.5
Q ss_pred EeC--CCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191 116 QLP--CNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 116 ~lp--C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~ 150 (164)
.+| |+...|++|-..-++....||-|+.+....+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 145 LLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVTDL 181 (1135)
T ss_pred CCcccccchhHHhHhhhhhhcCCCCCCCccccccccc
Confidence 456 67888999999999889999999998755443
No 219
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.45 E-value=73 Score=21.96 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=25.8
Q ss_pred ccccccccccCCCccEEeCCCCccchhhHHHHh
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCL 132 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl 132 (164)
.|.||-+++..|+...-++= -..|..|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 69999999999887766644 678999987754
No 220
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=39 Score=20.99 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.1
Q ss_pred CCCcccCccCCC
Q 031191 136 SSCPLCRFQLPM 147 (164)
Q Consensus 136 ~~CP~CR~~v~~ 147 (164)
-.||+||.++.-
T Consensus 9 LaCP~~kg~L~~ 20 (60)
T COG2835 9 LACPVCKGPLVY 20 (60)
T ss_pred eeccCcCCcceE
Confidence 369999998643
No 221
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.03 E-value=53 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=15.9
Q ss_pred ccccccccccCCCccEEeCCCCccchh
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSE 126 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~ 126 (164)
.=-||.+.-+ ++....|||.|+..
T Consensus 59 hlfi~qs~~~---rv~rcecghsf~d~ 82 (165)
T COG4647 59 HLFICQSAQK---RVIRCECGHSFGDY 82 (165)
T ss_pred cEEEEecccc---cEEEEeccccccCh
Confidence 4456665433 37777899999853
No 222
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=21.72 E-value=72 Score=21.42 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=21.8
Q ss_pred CccchhhHHHHh------cCCCCCcccCccCCCCCCCCccccccc
Q 031191 121 HLYHSECILPCL------SHQSSCPLCRFQLPMINPSNVVSWACS 159 (164)
Q Consensus 121 H~Fh~~CI~~Wl------~~~~~CP~CR~~v~~~~~~~~~~~~~~ 159 (164)
-.|...=..+|. .....||.|... .......-+|.|.
T Consensus 15 pRYG~~~Rrrv~~ie~~~~~~~~Cp~C~~~--~VkR~a~GIW~C~ 57 (89)
T COG1997 15 PRYGSKLRRRVKEIEAQQRAKHVCPFCGRT--TVKRIATGIWKCR 57 (89)
T ss_pred cccchHHHHHHHHHHHHHhcCCcCCCCCCc--ceeeeccCeEEcC
Confidence 334444444554 345689999876 3334556778765
No 223
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=21.68 E-value=51 Score=30.08 Aligned_cols=26 Identities=35% Similarity=0.885 Sum_probs=20.0
Q ss_pred CCCCccchhhHHHHhcCC-----CCCcccCc
Q 031191 118 PCNHLYHSECILPCLSHQ-----SSCPLCRF 143 (164)
Q Consensus 118 pC~H~Fh~~CI~~Wl~~~-----~~CP~CR~ 143 (164)
.|+-.||..|+..|+... -.||-||.
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 488999999999998422 35887765
No 224
>PLN02400 cellulose synthase
Probab=21.67 E-value=76 Score=30.80 Aligned_cols=48 Identities=19% Similarity=0.440 Sum_probs=33.7
Q ss_pred cccccccccccCC---Cc-cEEeCCCCccchhhHHH-HhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLH---SE-AKQLPCNHLYHSECILP-CLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~---~~-~~~lpC~H~Fh~~CI~~-Wl~~~~~CP~CR~~v~ 146 (164)
..|.||=+++... +- +..-.|+---|+.|-.- .-+.+..||-||+...
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 6999999998653 32 22334888899999732 2245678999998775
No 225
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=21.46 E-value=26 Score=16.15 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=5.1
Q ss_pred CCCCcchhH
Q 031191 20 LCPQWQTHF 28 (164)
Q Consensus 20 ~Cp~C~~~~ 28 (164)
.|+.|+..|
T Consensus 2 ~C~~C~~~~ 10 (24)
T PF13894_consen 2 QCPICGKSF 10 (24)
T ss_dssp E-SSTS-EE
T ss_pred CCcCCCCcC
Confidence 478887766
No 226
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=20.44 E-value=33 Score=34.23 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=36.6
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcC----CCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH----QSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP~CR~~v 145 (164)
..|.+|.....+...+...-|.-.||..|+..-+.. .=.||-||..-
T Consensus 1109 ~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 899999998877555545558899999999987743 34799998755
No 227
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=20.39 E-value=70 Score=19.89 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=13.2
Q ss_pred CCCccEEeCCCCccchh
Q 031191 110 LHSEAKQLPCNHLYHSE 126 (164)
Q Consensus 110 ~~~~~~~lpC~H~Fh~~ 126 (164)
.+..+..|.|||.=|..
T Consensus 8 e~hWVA~L~CGH~QHvR 24 (61)
T PF12088_consen 8 EGHWVAELSCGHTQHVR 24 (61)
T ss_pred cCCEEEEeccccccccc
Confidence 45678899999987753
No 228
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=20.19 E-value=54 Score=18.16 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=23.1
Q ss_pred cccccccccccCCC-ccEEeCCCCccchhhHHH
Q 031191 99 ESCAICKDEFSLHS-EAKQLPCNHLYHSECILP 130 (164)
Q Consensus 99 ~~C~ICl~~~~~~~-~~~~lpC~H~Fh~~CI~~ 130 (164)
..|.+|.+.+.... ...-..|+=..|..|+..
T Consensus 12 ~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 12 TKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 57999999887543 233334888999999876
No 229
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.06 E-value=30 Score=25.75 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=30.0
Q ss_pred cccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 103 ICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 103 ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
||+..-...+....-| =.+.||.+|-.+-. ..||-|..++...-
T Consensus 9 iC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 9 ICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGDY 53 (158)
T ss_pred HccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCce
Confidence 6776655554444444 46789999977643 46999999886653
Done!