Query 031191
Match_columns 164
No_of_seqs 157 out of 1615
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.7E-18 5.7E-23 116.7 7.5 71 76-147 15-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 2.9E-18 9.9E-23 111.3 3.4 65 84-148 6-73 (75)
3 2ep4_A Ring finger protein 24; 99.7 5.9E-17 2E-21 104.7 5.1 54 98-151 15-68 (74)
4 1iym_A EL5; ring-H2 finger, ub 99.7 5.9E-17 2E-21 98.8 4.7 49 98-146 5-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.6 1.4E-16 4.9E-21 101.5 5.2 52 98-149 14-65 (69)
6 2ect_A Ring finger protein 126 99.6 2E-16 6.9E-21 103.1 5.1 55 98-152 15-69 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 5.7E-16 2E-20 102.1 3.1 50 98-147 15-76 (81)
8 1v87_A Deltex protein 2; ring- 99.6 2.4E-15 8E-20 104.8 6.3 52 98-149 25-96 (114)
9 2ecm_A Ring finger and CHY zin 99.6 1.2E-15 4.2E-20 92.8 4.0 49 98-146 5-54 (55)
10 2djb_A Polycomb group ring fin 99.5 6.3E-15 2.2E-19 94.7 5.3 53 98-153 15-68 (72)
11 3ng2_A RNF4, snurf, ring finge 99.5 2.8E-15 9.7E-20 95.7 3.4 53 98-150 10-66 (71)
12 2d8t_A Dactylidin, ring finger 99.5 1.8E-15 6.1E-20 97.1 2.2 50 98-150 15-64 (71)
13 2ecn_A Ring finger protein 141 99.5 4.2E-15 1.4E-19 94.8 3.5 50 98-151 15-64 (70)
14 3dpl_R Ring-box protein 1; ubi 99.5 8.2E-15 2.8E-19 101.4 5.0 50 97-146 36-100 (106)
15 2ea6_A Ring finger protein 4; 99.5 3.9E-15 1.3E-19 94.4 3.0 50 98-147 15-68 (69)
16 2xeu_A Ring finger protein 4; 99.5 6.6E-15 2.3E-19 91.9 2.9 52 98-149 3-58 (64)
17 2d8s_A Cellular modulator of i 99.5 1.4E-14 4.7E-19 95.4 4.2 55 98-153 15-76 (80)
18 2ct2_A Tripartite motif protei 99.5 2.6E-14 8.9E-19 94.7 4.8 52 98-149 15-70 (88)
19 2ysl_A Tripartite motif-contai 99.5 8E-14 2.7E-18 89.4 6.4 49 98-149 20-71 (73)
20 1chc_A Equine herpes virus-1 r 99.5 2.5E-14 8.5E-19 90.6 3.2 48 98-147 5-52 (68)
21 4ayc_A E3 ubiquitin-protein li 99.5 3.6E-14 1.2E-18 102.2 4.2 47 99-148 54-100 (138)
22 2yur_A Retinoblastoma-binding 99.5 5.3E-14 1.8E-18 90.9 4.5 48 98-148 15-65 (74)
23 2ecy_A TNF receptor-associated 99.5 6E-14 2.1E-18 88.5 4.6 49 98-149 15-64 (66)
24 4a0k_B E3 ubiquitin-protein li 99.4 1.1E-14 3.8E-19 102.4 -0.2 50 97-146 47-111 (117)
25 2csy_A Zinc finger protein 183 99.4 7.7E-14 2.6E-18 91.5 3.9 46 98-146 15-60 (81)
26 1t1h_A Gspef-atpub14, armadill 99.4 3E-13 1E-17 87.9 5.0 49 98-149 8-57 (78)
27 3lrq_A E3 ubiquitin-protein li 99.4 8.9E-14 3E-18 94.9 2.2 49 99-150 23-73 (100)
28 2ct0_A Non-SMC element 1 homol 99.4 2.6E-13 8.9E-18 87.9 4.2 52 99-152 16-69 (74)
29 2ecw_A Tripartite motif-contai 99.4 4E-13 1.4E-17 88.1 5.2 48 98-148 19-72 (85)
30 2ecv_A Tripartite motif-contai 99.4 4.5E-13 1.5E-17 87.9 4.7 49 98-149 19-73 (85)
31 2ysj_A Tripartite motif-contai 99.4 7.6E-13 2.6E-17 82.6 5.3 41 98-141 20-63 (63)
32 2egp_A Tripartite motif-contai 99.4 1.3E-13 4.4E-18 89.7 1.8 48 98-148 12-66 (79)
33 2ckl_A Polycomb group ring fin 99.4 3.5E-13 1.2E-17 93.0 3.8 49 97-148 14-63 (108)
34 2y43_A E3 ubiquitin-protein li 99.4 3.6E-13 1.2E-17 91.5 3.7 47 99-148 23-70 (99)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 4.1E-13 1.4E-17 95.0 3.7 52 98-149 7-62 (133)
36 3fl2_A E3 ubiquitin-protein li 99.3 8.7E-13 3E-17 93.1 4.7 46 99-147 53-99 (124)
37 1g25_A CDK-activating kinase a 99.3 1.1E-12 3.8E-17 82.4 4.6 52 99-150 4-58 (65)
38 2ecj_A Tripartite motif-contai 99.3 1E-12 3.5E-17 80.4 3.5 41 98-141 15-58 (58)
39 1jm7_A BRCA1, breast cancer ty 99.3 1.3E-12 4.5E-17 90.2 4.0 49 99-150 22-73 (112)
40 3ztg_A E3 ubiquitin-protein li 99.3 2.4E-12 8.2E-17 86.1 4.5 46 98-146 13-61 (92)
41 4ap4_A E3 ubiquitin ligase RNF 99.3 1.4E-12 4.8E-17 92.2 2.7 53 97-149 71-127 (133)
42 1z6u_A NP95-like ring finger p 99.3 3.9E-12 1.3E-16 92.9 4.7 47 99-148 79-126 (150)
43 2ckl_B Ubiquitin ligase protei 99.2 3.2E-12 1.1E-16 94.4 3.9 46 99-147 55-102 (165)
44 3hct_A TNF receptor-associated 99.2 2.3E-12 7.9E-17 90.3 2.9 49 98-149 18-67 (118)
45 3l11_A E3 ubiquitin-protein li 99.2 1.6E-12 5.4E-17 90.6 1.9 46 99-147 16-62 (115)
46 1rmd_A RAG1; V(D)J recombinati 99.2 3E-12 1E-16 89.3 3.1 49 99-150 24-73 (116)
47 2vje_A E3 ubiquitin-protein li 99.2 8E-12 2.7E-16 78.6 2.9 46 98-146 8-56 (64)
48 1bor_A Transcription factor PM 99.2 4E-12 1.4E-16 77.8 1.3 45 98-148 6-50 (56)
49 2kr4_A Ubiquitin conjugation f 99.2 1.4E-11 4.7E-16 81.7 3.7 48 98-148 14-61 (85)
50 2kre_A Ubiquitin conjugation f 99.2 1.8E-11 6E-16 83.7 4.1 49 98-149 29-77 (100)
51 1e4u_A Transcriptional repress 99.2 2.4E-11 8.3E-16 79.4 4.4 52 98-150 11-65 (78)
52 1wgm_A Ubiquitin conjugation f 99.2 3.5E-11 1.2E-15 81.9 5.2 49 98-149 22-71 (98)
53 2y1n_A E3 ubiquitin-protein li 99.1 1.9E-11 6.4E-16 101.5 3.6 49 99-150 333-382 (389)
54 2vje_B MDM4 protein; proto-onc 99.1 2.3E-11 8E-16 76.2 2.8 46 98-146 7-55 (63)
55 3knv_A TNF receptor-associated 99.1 2.1E-11 7.3E-16 88.2 2.7 47 98-147 31-78 (141)
56 1jm7_B BARD1, BRCA1-associated 99.1 2E-11 6.8E-16 85.3 2.2 46 98-148 22-68 (117)
57 4ic3_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 77.5 2.9 42 99-147 25-67 (74)
58 3hcs_A TNF receptor-associated 99.0 1.7E-10 5.8E-15 85.4 3.2 48 98-148 18-66 (170)
59 2yu4_A E3 SUMO-protein ligase 98.9 2.6E-10 9E-15 76.8 2.5 47 98-147 7-63 (94)
60 2ecg_A Baculoviral IAP repeat- 98.9 3.6E-10 1.2E-14 72.9 2.9 43 99-148 26-69 (75)
61 2c2l_A CHIP, carboxy terminus 98.9 2.8E-10 9.6E-15 89.5 2.8 48 98-148 208-256 (281)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.9 6.3E-10 2.2E-14 69.0 3.8 47 98-147 6-59 (60)
63 2yho_A E3 ubiquitin-protein li 98.9 4.5E-10 1.5E-14 73.4 1.6 43 99-148 19-62 (79)
64 3k1l_B Fancl; UBC, ring, RWD, 98.9 3.1E-10 1.1E-14 92.4 0.8 50 97-146 307-372 (381)
65 2ea5_A Cell growth regulator w 98.8 1.9E-09 6.4E-14 68.5 3.6 44 98-148 15-59 (68)
66 2f42_A STIP1 homology and U-bo 98.8 1.7E-09 5.8E-14 81.1 3.0 48 98-148 106-154 (179)
67 1wim_A KIAA0161 protein; ring 98.7 3E-09 1E-13 71.3 1.7 47 98-144 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.7 3.8E-09 1.3E-13 65.6 1.8 49 99-150 4-53 (61)
69 3htk_C E3 SUMO-protein ligase 98.6 1.3E-08 4.4E-13 80.2 3.0 48 98-148 181-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.6 8.8E-09 3E-13 84.5 2.0 42 99-147 296-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.4 2.6E-07 9E-12 62.3 3.5 45 101-147 4-49 (101)
72 3nw0_A Non-structural maintena 98.2 1.6E-06 5.3E-11 67.7 5.4 48 99-149 181-231 (238)
73 2ko5_A Ring finger protein Z; 96.4 0.0018 6.1E-08 43.0 2.8 47 99-150 29-76 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.1 0.011 3.7E-07 39.2 2.2 34 99-132 4-38 (101)
75 2lri_C Autoimmune regulator; Z 94.5 0.049 1.7E-06 33.7 4.0 44 99-146 13-61 (66)
76 1f62_A Transcription factor WS 89.9 0.15 5.3E-06 29.4 1.9 43 100-143 2-49 (51)
77 1we9_A PHD finger family prote 89.7 0.099 3.4E-06 31.7 0.9 46 98-143 6-57 (64)
78 3m62_A Ubiquitin conjugation f 88.6 0.3 1E-05 44.7 3.6 48 99-149 892-940 (968)
79 2k16_A Transcription initiatio 87.7 0.19 6.6E-06 31.4 1.3 46 99-145 19-69 (75)
80 1wil_A KIAA1045 protein; ring 87.3 0.98 3.3E-05 29.2 4.4 33 98-131 15-47 (89)
81 2l5u_A Chromodomain-helicase-D 87.1 0.38 1.3E-05 28.9 2.3 43 98-144 11-58 (61)
82 3lqh_A Histone-lysine N-methyl 85.2 0.32 1.1E-05 36.0 1.6 47 99-145 3-64 (183)
83 2ysm_A Myeloid/lymphoid or mix 84.7 0.34 1.2E-05 32.6 1.4 36 98-133 7-42 (111)
84 1wep_A PHF8; structural genomi 84.0 1.6 5.6E-05 27.4 4.3 46 99-145 13-64 (79)
85 1fp0_A KAP-1 corepressor; PHD 81.8 1 3.5E-05 29.3 2.8 47 98-148 25-76 (88)
86 2kgg_A Histone demethylase jar 81.8 1.2 4.1E-05 25.7 2.8 43 100-142 4-52 (52)
87 2yql_A PHD finger protein 21A; 81.2 0.23 7.7E-06 29.4 -0.6 42 98-143 9-55 (56)
88 3o36_A Transcription intermedi 81.2 0.53 1.8E-05 34.5 1.3 44 98-145 4-52 (184)
89 3v43_A Histone acetyltransfera 81.0 0.64 2.2E-05 31.4 1.6 45 99-143 62-111 (112)
90 2vpb_A Hpygo1, pygopus homolog 79.8 1.3 4.5E-05 27.0 2.6 32 98-129 8-41 (65)
91 2l43_A N-teminal domain from h 79.6 0.63 2.1E-05 30.2 1.1 51 98-148 25-79 (88)
92 2e6s_A E3 ubiquitin-protein li 78.6 0.36 1.2E-05 30.6 -0.3 44 99-143 27-76 (77)
93 1mm2_A MI2-beta; PHD, zinc fin 78.5 0.73 2.5E-05 27.6 1.1 43 98-144 9-56 (61)
94 3u5n_A E3 ubiquitin-protein li 77.9 1.1 3.7E-05 33.5 2.2 45 98-146 7-56 (207)
95 2ku3_A Bromodomain-containing 77.8 0.99 3.4E-05 28.0 1.6 46 98-143 16-65 (71)
96 2yw8_A RUN and FYVE domain-con 77.3 1.7 5.7E-05 27.6 2.6 34 98-131 19-53 (82)
97 2lbm_A Transcriptional regulat 77.1 3.2 0.00011 29.4 4.3 42 98-143 63-116 (142)
98 3asl_A E3 ubiquitin-protein li 77.1 0.37 1.3E-05 29.9 -0.6 43 100-143 20-68 (70)
99 3v43_A Histone acetyltransfera 74.6 3 0.0001 28.0 3.5 31 99-129 6-42 (112)
100 2ri7_A Nucleosome-remodeling f 74.1 1.5 5.2E-05 31.6 2.0 45 99-144 9-59 (174)
101 1xwh_A Autoimmune regulator; P 73.6 1.2 4.2E-05 27.0 1.2 43 98-144 8-55 (66)
102 4gne_A Histone-lysine N-methyl 71.1 3.9 0.00013 27.4 3.4 56 98-160 15-77 (107)
103 2puy_A PHD finger protein 21A; 69.2 0.87 3E-05 27.1 -0.2 43 98-144 5-52 (60)
104 3ask_A E3 ubiquitin-protein li 69.1 1.2 4E-05 34.1 0.4 44 99-143 175-224 (226)
105 2xb1_A Pygopus homolog 2, B-ce 69.1 2.3 7.8E-05 28.4 1.8 47 99-145 4-62 (105)
106 2lv9_A Histone-lysine N-methyl 69.0 1 3.5E-05 29.7 0.0 44 99-143 29-75 (98)
107 2yt5_A Metal-response element- 68.4 3 0.0001 25.0 2.1 47 98-144 6-61 (66)
108 3t7l_A Zinc finger FYVE domain 68.2 3.7 0.00013 26.5 2.7 34 99-132 21-55 (90)
109 2cs3_A Protein C14ORF4, MY039 67.8 3.4 0.00012 26.4 2.3 35 99-134 16-52 (93)
110 1wev_A Riken cDNA 1110020M19; 67.7 1.3 4.3E-05 28.7 0.3 49 99-147 17-75 (88)
111 3shb_A E3 ubiquitin-protein li 67.3 0.75 2.6E-05 29.1 -0.9 43 100-143 28-76 (77)
112 2kwj_A Zinc finger protein DPF 67.0 2.3 8E-05 28.6 1.6 33 99-131 2-41 (114)
113 2e6r_A Jumonji/ARID domain-con 65.6 0.55 1.9E-05 30.7 -1.8 45 99-144 17-66 (92)
114 1joc_A EEA1, early endosomal a 65.5 4.1 0.00014 28.0 2.6 33 99-131 70-103 (125)
115 3ql9_A Transcriptional regulat 65.2 8.2 0.00028 26.8 4.1 42 98-143 57-110 (129)
116 1z2q_A LM5-1; membrane protein 64.8 5.5 0.00019 25.2 3.0 34 98-131 21-55 (84)
117 1weo_A Cellulose synthase, cat 64.3 12 0.00039 24.4 4.3 48 99-146 17-69 (93)
118 1z60_A TFIIH basal transcripti 64.2 2.6 8.8E-05 25.3 1.2 42 99-141 16-58 (59)
119 2co8_A NEDD9 interacting prote 63.4 6.6 0.00022 24.4 3.1 41 99-149 16-56 (82)
120 1wem_A Death associated transc 63.3 1.5 5E-05 27.3 -0.1 46 99-145 17-71 (76)
121 2dar_A PDZ and LIM domain prot 63.1 18 0.00062 22.6 5.3 41 97-148 24-64 (90)
122 1iml_A CRIP, cysteine rich int 62.8 3.3 0.00011 25.2 1.6 12 99-110 28-39 (76)
123 1y02_A CARP2, FYVE-ring finger 62.7 1.1 3.6E-05 31.0 -0.9 45 99-143 20-65 (120)
124 2cu8_A Cysteine-rich protein 2 62.6 4.7 0.00016 24.5 2.3 40 99-148 10-49 (76)
125 1wfk_A Zinc finger, FYVE domai 62.3 5.6 0.00019 25.5 2.7 48 99-146 10-65 (88)
126 1weu_A Inhibitor of growth fam 62.2 8.4 0.00029 25.0 3.5 43 99-145 37-86 (91)
127 1wee_A PHD finger family prote 61.6 1.3 4.4E-05 27.4 -0.6 45 99-144 17-66 (72)
128 3o70_A PHD finger protein 13; 61.4 1.6 5.6E-05 26.7 -0.1 44 98-143 19-66 (68)
129 1x4u_A Zinc finger, FYVE domai 59.7 6.9 0.00024 24.7 2.7 32 99-130 15-47 (84)
130 2ro1_A Transcription intermedi 59.5 2.3 7.9E-05 31.3 0.5 44 99-145 3-50 (189)
131 1vfy_A Phosphatidylinositol-3- 59.3 6.1 0.00021 24.3 2.4 32 99-130 12-44 (73)
132 3a1b_A DNA (cytosine-5)-methyl 56.8 8.1 0.00028 27.8 2.9 36 94-133 75-113 (159)
133 2d8v_A Zinc finger FYVE domain 56.7 4.1 0.00014 24.9 1.2 29 99-131 9-38 (67)
134 1wew_A DNA-binding family prot 56.1 2.6 8.7E-05 26.4 0.2 46 99-145 17-73 (78)
135 1zbd_B Rabphilin-3A; G protein 55.8 5.5 0.00019 27.8 1.9 32 98-129 55-88 (134)
136 2o35_A Hypothetical protein DU 55.0 4.3 0.00015 26.9 1.1 12 122-133 42-53 (105)
137 1g47_A Pinch protein; LIM doma 54.7 12 0.00042 22.4 3.3 42 98-148 11-52 (77)
138 1zfo_A LAsp-1; LIM domain, zin 54.4 3.7 0.00012 21.0 0.6 27 99-127 4-30 (31)
139 1dvp_A HRS, hepatocyte growth 54.3 6.2 0.00021 29.5 2.1 34 98-131 161-195 (220)
140 1wyh_A SLIM 2, skeletal muscle 53.9 11 0.00036 22.4 2.8 41 99-148 6-46 (72)
141 1wen_A Inhibitor of growth fam 53.6 5.6 0.00019 24.5 1.4 43 99-145 17-66 (71)
142 2dj7_A Actin-binding LIM prote 53.0 8 0.00027 23.9 2.2 38 99-146 16-53 (80)
143 3fyb_A Protein of unknown func 52.2 5.4 0.00019 26.4 1.3 12 122-133 41-52 (104)
144 1x4k_A Skeletal muscle LIM-pro 52.1 12 0.00042 22.1 2.9 41 99-148 6-46 (72)
145 3zyq_A Hepatocyte growth facto 51.6 7 0.00024 29.4 2.0 34 98-131 164-198 (226)
146 2gmg_A Hypothetical protein PF 51.4 5 0.00017 26.9 1.0 28 117-149 71-98 (105)
147 2jvx_A NF-kappa-B essential mo 51.2 3.4 0.00011 21.0 0.1 13 135-147 3-15 (28)
148 1x63_A Skeletal muscle LIM-pro 49.3 17 0.0006 22.0 3.4 41 99-148 16-56 (82)
149 1x4l_A Skeletal muscle LIM-pro 49.3 25 0.00087 20.7 4.1 40 99-147 6-47 (72)
150 1x61_A Thyroid receptor intera 47.7 20 0.00067 21.2 3.3 39 99-146 6-44 (72)
151 2lvu_A Zinc finger and BTB dom 52.9 4 0.00014 18.4 0.0 13 18-30 2-14 (26)
152 3mjh_B Early endosome antigen 46.7 5.5 0.00019 21.1 0.5 12 99-110 6-17 (34)
153 3mpx_A FYVE, rhogef and PH dom 46.3 4.2 0.00014 33.2 0.0 34 99-132 376-410 (434)
154 1x64_A Alpha-actinin-2 associa 45.4 28 0.00095 21.6 3.9 39 99-148 26-64 (89)
155 1x68_A FHL5 protein; four-and- 44.8 20 0.00069 21.5 3.1 39 99-146 6-46 (76)
156 2pk7_A Uncharacterized protein 43.8 5.9 0.0002 24.4 0.4 20 129-148 2-21 (69)
157 3o7a_A PHD finger protein 13 v 43.6 4.4 0.00015 23.2 -0.2 40 103-143 8-51 (52)
158 3i2d_A E3 SUMO-protein ligase 43.5 22 0.00076 29.0 3.9 46 99-147 250-300 (371)
159 3f6q_B LIM and senescent cell 43.4 10 0.00034 22.3 1.4 41 99-148 12-52 (72)
160 2vnf_A ING 4, P29ING4, inhibit 43.2 3.8 0.00013 24.3 -0.5 40 99-143 11-58 (60)
161 3kqi_A GRC5, PHD finger protei 42.8 6.4 0.00022 24.3 0.5 45 100-144 11-61 (75)
162 2jny_A Uncharacterized BCR; st 42.8 5.1 0.00018 24.5 -0.0 20 129-148 4-23 (67)
163 3c6w_A P28ING5, inhibitor of g 42.2 4.3 0.00015 24.1 -0.4 41 99-143 10-57 (59)
164 2d8z_A Four and A half LIM dom 42.1 26 0.00088 20.5 3.2 38 99-147 6-43 (70)
165 2kfq_A FP1; protein, de novo p 41.0 13 0.00043 17.8 1.4 15 18-32 2-16 (32)
166 4fo9_A E3 SUMO-protein ligase 40.8 25 0.00087 28.5 3.8 46 99-147 216-266 (360)
167 2zet_C Melanophilin; complex, 40.8 13 0.00043 26.5 1.8 31 98-128 68-100 (153)
168 1nyp_A Pinch protein; LIM doma 40.6 23 0.00078 20.5 2.8 38 99-147 6-43 (66)
169 2lvt_A Zinc finger and BTB dom 46.4 6 0.0002 18.2 0.0 13 18-30 2-14 (29)
170 2l3k_A Rhombotin-2, linker, LI 40.0 20 0.00068 23.9 2.7 33 99-132 37-69 (123)
171 1ard_A Yeast transcription fac 39.3 6.7 0.00023 17.8 0.1 12 18-29 2-13 (29)
172 1klr_A Zinc finger Y-chromosom 38.9 7.1 0.00024 17.8 0.2 11 18-28 2-12 (30)
173 2m0e_A Zinc finger and BTB dom 38.2 8.2 0.00028 17.4 0.3 11 18-28 2-12 (29)
174 1znf_A 31ST zinc finger from X 38.1 6.2 0.00021 17.7 -0.1 10 19-28 2-11 (27)
175 2pv0_B DNA (cytosine-5)-methyl 38.0 20 0.00068 29.5 2.8 35 94-132 89-126 (386)
176 2cor_A Pinch protein; LIM doma 36.5 32 0.0011 20.9 3.0 39 99-148 16-54 (79)
177 2lvr_A Zinc finger and BTB dom 42.6 7.5 0.00026 17.8 0.0 13 18-30 3-15 (30)
178 2d8x_A Protein pinch; LIM doma 35.9 22 0.00075 20.9 2.1 39 99-148 6-44 (70)
179 1x62_A C-terminal LIM domain p 35.0 20 0.0007 21.7 1.9 37 99-146 16-52 (79)
180 2d8y_A Eplin protein; LIM doma 34.9 29 0.001 21.6 2.7 40 99-148 16-55 (91)
181 1p7a_A BF3, BKLF, kruppel-like 34.4 9 0.00031 18.8 0.1 13 17-29 10-22 (37)
182 2jmo_A Parkin; IBR, E3 ligase, 34.4 3.6 0.00012 25.9 -1.8 14 118-131 55-68 (80)
183 1a7i_A QCRP2 (LIM1); LIM domai 34.0 14 0.00049 22.5 1.1 40 99-148 8-47 (81)
184 1rim_A E6APC2 peptide; E6-bind 33.6 9.7 0.00033 18.4 0.2 12 18-29 2-13 (33)
185 2e72_A POGO transposable eleme 33.3 9.8 0.00034 21.7 0.2 12 17-28 11-22 (49)
186 2jr6_A UPF0434 protein NMA0874 33.0 5.7 0.0002 24.4 -0.9 19 130-148 3-21 (68)
187 2cur_A Skeletal muscle LIM-pro 32.9 33 0.0011 19.9 2.6 37 99-146 6-42 (69)
188 1paa_A Yeast transcription fac 32.7 9.2 0.00031 17.5 -0.0 11 18-28 2-12 (30)
189 1v6g_A Actin binding LIM prote 32.3 29 0.00098 21.0 2.3 39 99-148 16-54 (81)
190 2kvf_A Zinc finger and BTB dom 31.9 6.7 0.00023 17.8 -0.6 12 18-29 3-14 (28)
191 2kvh_A Zinc finger and BTB dom 31.8 6.6 0.00022 17.8 -0.7 12 18-29 3-14 (27)
192 2rsd_A E3 SUMO-protein ligase 31.6 3.6 0.00012 25.0 -2.1 44 99-143 11-64 (68)
193 2elr_A Zinc finger protein 406 31.4 11 0.00036 18.3 0.1 13 17-29 8-20 (36)
194 2roo_A Neurotoxin MAGI-4; spid 31.3 2.1 7.2E-05 23.5 -2.7 14 126-139 19-32 (43)
195 2lq6_A Bromodomain-containing 31.2 17 0.0006 23.1 1.2 32 98-130 17-50 (87)
196 2ehe_A Four and A half LIM dom 31.0 41 0.0014 20.3 2.9 40 99-147 16-55 (82)
197 1rik_A E6APC1 peptide; E6-bind 30.7 6.5 0.00022 17.9 -0.8 11 18-28 2-12 (29)
198 2egq_A FHL1 protein; LIM domai 30.4 43 0.0015 19.9 2.9 41 99-148 16-59 (77)
199 1wig_A KIAA1808 protein; LIM d 30.3 42 0.0014 19.9 2.8 37 99-146 6-42 (73)
200 2ct7_A Ring finger protein 31; 30.2 6.7 0.00023 24.9 -1.0 23 113-135 42-65 (86)
201 6rxn_A Rubredoxin; electron tr 30.1 16 0.00054 20.6 0.7 13 15-27 27-39 (46)
202 1qdp_A Robustoxin; neurotoxin, 29.9 2.2 7.7E-05 23.3 -2.8 14 126-139 19-32 (42)
203 2dlo_A Thyroid receptor-intera 29.8 32 0.0011 20.8 2.2 38 99-147 16-53 (81)
204 2kpi_A Uncharacterized protein 29.7 5.7 0.00019 23.4 -1.3 19 129-147 4-22 (56)
205 1x6a_A LIMK-2, LIM domain kina 29.7 36 0.0012 20.5 2.5 38 99-147 16-53 (81)
206 2hf1_A Tetraacyldisaccharide-1 29.6 5.8 0.0002 24.4 -1.3 19 130-148 3-21 (68)
207 1wd2_A Ariadne-1 protein homol 29.2 24 0.00082 20.8 1.4 19 131-149 1-20 (60)
208 2cup_A Skeletal muscle LIM-pro 29.0 62 0.0021 20.2 3.7 45 99-147 34-78 (101)
209 2jne_A Hypothetical protein YF 28.3 19 0.00065 23.7 0.9 42 98-147 32-73 (101)
210 2cuq_A Four and A half LIM dom 28.2 49 0.0017 19.7 2.9 37 99-146 16-52 (80)
211 2kvg_A Zinc finger and BTB dom 27.7 6 0.00021 18.1 -1.3 12 18-29 3-14 (27)
212 2js4_A UPF0434 protein BB2007; 27.6 6.4 0.00022 24.3 -1.4 19 130-148 3-21 (70)
213 2l4z_A DNA endonuclease RBBP8, 27.3 28 0.00095 23.4 1.7 39 98-146 61-99 (123)
214 2m0d_A Zinc finger and BTB dom 26.9 9 0.00031 17.4 -0.7 11 18-28 3-13 (30)
215 2elx_A Zinc finger protein 406 26.6 9.5 0.00033 18.3 -0.6 13 17-29 6-18 (35)
216 1rut_X Flinc4, fusion protein 26.4 45 0.0015 23.8 2.8 38 100-146 71-108 (188)
217 2iyb_E Testin, TESS, TES; LIM 26.1 48 0.0016 19.1 2.5 41 99-148 3-45 (65)
218 1x3h_A Leupaxin; paxillin fami 25.8 42 0.0015 20.1 2.3 39 99-148 16-54 (80)
219 2das_A Zinc finger MYM-type pr 25.7 64 0.0022 19.2 2.8 34 98-131 20-55 (62)
220 3alr_A Nanos protein; zinc-fin 25.7 18 0.00061 24.1 0.4 17 11-27 64-80 (106)
221 2m0f_A Zinc finger and BTB dom 25.4 9.1 0.00031 17.2 -0.8 11 18-28 2-12 (29)
222 1b8t_A Protein (CRP1); LIM dom 24.9 37 0.0013 24.3 2.2 39 99-147 116-154 (192)
223 4rxn_A Rubredoxin; electron tr 24.8 22 0.00076 20.7 0.7 14 15-28 33-46 (54)
224 2eos_A B-cell lymphoma 6 prote 24.7 18 0.00062 18.3 0.3 13 17-29 10-22 (42)
225 1m3v_A FLIN4, fusion of the LI 24.5 62 0.0021 21.3 3.1 49 99-148 33-82 (122)
226 2rgt_A Fusion of LIM/homeobox 24.2 44 0.0015 23.4 2.4 12 18-29 6-17 (169)
227 2ytb_A Zinc finger protein 32; 24.0 19 0.00065 18.1 0.3 13 17-29 10-22 (42)
228 2elo_A Zinc finger protein 406 24.0 10 0.00036 18.5 -0.8 13 17-29 8-20 (37)
229 2g6q_A Inhibitor of growth pro 23.7 14 0.00047 22.0 -0.4 42 99-143 12-59 (62)
230 2xjy_A Rhombotin-2; oncoprotei 23.5 64 0.0022 21.3 3.0 27 100-127 68-94 (131)
231 2a20_A Regulating synaptic mem 23.5 51 0.0017 19.6 2.1 35 98-132 9-44 (62)
232 2yti_A Zinc finger protein 347 23.3 21 0.0007 18.5 0.3 12 17-28 11-22 (46)
233 2en7_A Zinc finger protein 268 23.3 20 0.0007 18.1 0.3 13 17-29 11-23 (44)
234 2elp_A Zinc finger protein 406 23.0 12 0.00041 18.3 -0.7 13 17-29 8-20 (37)
235 1srk_A Zinc finger protein ZFP 22.9 12 0.0004 18.0 -0.7 13 17-29 6-18 (35)
236 2els_A Zinc finger protein 406 22.5 12 0.00043 18.1 -0.7 13 17-29 8-20 (36)
237 2eou_A Zinc finger protein 473 22.4 22 0.00075 18.2 0.3 13 17-29 11-23 (44)
238 2emg_A Zinc finger protein 484 22.4 20 0.00068 18.5 0.1 12 17-28 11-22 (46)
239 2k5r_A Uncharacterized protein 22.3 16 0.00054 24.0 -0.3 19 129-147 2-20 (97)
240 2eoh_A Zinc finger protein 28 22.2 23 0.00077 18.3 0.4 13 17-29 11-23 (46)
241 2elt_A Zinc finger protein 406 22.2 12 0.00041 18.1 -0.8 13 17-29 8-20 (36)
242 1loi_A Cyclic 3',5'-AMP specif 22.2 5.7 0.00019 19.1 -1.9 11 122-132 6-16 (26)
243 2yte_A Zinc finger protein 473 22.1 20 0.00069 18.0 0.1 13 17-29 9-21 (42)
244 2elv_A Zinc finger protein 406 22.1 13 0.00044 18.1 -0.7 13 17-29 8-20 (36)
245 2eon_A ZFP-95, zinc finger pro 22.0 20 0.0007 18.6 0.1 13 17-29 11-23 (46)
246 2eq2_A Zinc finger protein 347 21.9 23 0.0008 18.2 0.4 12 17-28 11-22 (46)
247 2enf_A Zinc finger protein 347 21.9 21 0.0007 18.5 0.1 13 17-29 11-23 (46)
248 1fv5_A First zinc finger of U- 21.9 11 0.00038 19.6 -1.0 14 17-30 7-20 (36)
249 2eq1_A Zinc finger protein 347 21.5 23 0.0008 18.2 0.3 12 17-28 11-22 (46)
250 2elq_A Zinc finger protein 406 21.2 14 0.00048 17.9 -0.7 13 17-29 8-20 (36)
251 1e8j_A Rubredoxin; iron-sulfur 21.2 33 0.0011 19.7 0.9 13 15-27 33-45 (52)
252 2emz_A ZFP-95, zinc finger pro 21.0 25 0.00085 18.2 0.4 13 17-29 11-23 (46)
253 2enh_A Zinc finger protein 28 20.8 22 0.00074 18.4 0.1 12 17-28 11-22 (46)
254 2yth_A Zinc finger protein 224 20.8 24 0.0008 18.3 0.2 12 17-28 11-22 (46)
255 2eom_A ZFP-95, zinc finger pro 20.7 25 0.00084 18.2 0.3 12 17-28 11-22 (46)
256 2ep1_A Zinc finger protein 484 20.4 26 0.0009 17.9 0.4 12 17-28 11-22 (46)
257 4e0h_A Mitochondrial FAD-linke 20.4 26 0.00089 23.0 0.4 24 19-42 45-68 (106)
258 2ytr_A Zinc finger protein 347 20.3 26 0.00088 18.0 0.3 12 17-28 11-22 (46)
259 2jtn_A LIM domain-binding prot 20.2 55 0.0019 23.2 2.2 44 99-147 88-131 (182)
260 1yk4_A Rubredoxin, RD; electro 20.2 31 0.0011 19.8 0.7 13 15-27 32-44 (52)
261 2eov_A Zinc finger protein 484 20.1 24 0.00081 18.1 0.1 12 17-28 11-22 (46)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=116.72 Aligned_cols=71 Identities=25% Similarity=0.603 Sum_probs=61.9
Q ss_pred CCCChhHHhhhCCceeeccCC----CccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 76 GLDNSSSVGMRMNSVEISESL----SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 76 ~~~~~~~~~~~lp~~~~~~~~----~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
.+... +.+..||.+.+.+.. ....|+||++.|..++.++.+||+|.||..||..|++.+.+||+||+.+..
T Consensus 15 ~~~s~-~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 15 PPASK-ESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCH-HHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCH-HHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34444 899999999887654 237899999999999999999999999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-18 Score=111.31 Aligned_cols=65 Identities=26% Similarity=0.594 Sum_probs=55.0
Q ss_pred hhhCCceeeccCC---CccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 84 GMRMNSVEISESL---SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 84 ~~~lp~~~~~~~~---~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
+..+|.+.+.... ....|+||++.|..++.++.+||+|.||..||.+|++.+.+||+||+++.+.
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4556676665432 3378999999999999899999999999999999999899999999988654
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-17 Score=104.65 Aligned_cols=54 Identities=30% Similarity=0.792 Sum_probs=48.8
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS 151 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~ 151 (164)
...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+......
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 479999999999999899999999999999999998889999999998765443
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=5.9e-17 Score=98.79 Aligned_cols=49 Identities=41% Similarity=0.874 Sum_probs=45.9
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
+.+|+||++.+..++.++.++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 468999999999999999998 9999999999999999999999999874
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=101.49 Aligned_cols=52 Identities=31% Similarity=0.783 Sum_probs=47.6
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+....
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 3789999999998888999999999999999999998999999999986653
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=2e-16 Score=103.10 Aligned_cols=55 Identities=42% Similarity=1.006 Sum_probs=49.6
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSN 152 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~ 152 (164)
...|+||++.|..++.++.++|+|.||..||.+|++.+.+||+||+.+.......
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 4799999999999888889999999999999999999999999999997765543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.7e-16 Score=102.13 Aligned_cols=50 Identities=26% Similarity=0.648 Sum_probs=41.4
Q ss_pred cccccccccccc-----------CCCccEEeC-CCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 98 QESCAICKDEFS-----------LHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~-----------~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
++.|+||++.|. .++.++.++ |+|.||..||.+||+.+.+||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 356777777775 455677776 99999999999999999999999998754
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.58 E-value=2.4e-15 Score=104.77 Aligned_cols=52 Identities=25% Similarity=0.635 Sum_probs=43.0
Q ss_pred ccccccccccccCCC---------------ccEEeCCCCccchhhHHHHh-----cCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHS---------------EAKQLPCNHLYHSECILPCL-----SHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~---------------~~~~lpC~H~Fh~~CI~~Wl-----~~~~~CP~CR~~v~~~~ 149 (164)
+..|+||++.|..+. .++.++|+|.||..||..|+ +.+.+||+||+.+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 479999999997643 34477899999999999999 55779999999886553
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.57 E-value=1.2e-15 Score=92.78 Aligned_cols=49 Identities=33% Similarity=0.712 Sum_probs=43.0
Q ss_pred ccccccccccccCCC-ccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHS-EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~-~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
...|+||++.+.+++ .++.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 478999999997654 4677889999999999999988899999999874
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.3e-15 Score=94.70 Aligned_cols=53 Identities=25% Similarity=0.539 Sum_probs=46.5
Q ss_pred ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCCCCCCc
Q 031191 98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMINPSNV 153 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~~~ 153 (164)
...|+||++.+.+ ++.+ +|+|.||..||..|++.+..||+||+.+...+....
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 4799999999988 7776 899999999999999889999999999977665543
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.54 E-value=2.8e-15 Score=95.67 Aligned_cols=53 Identities=28% Similarity=0.632 Sum_probs=45.7
Q ss_pred ccccccccccccC----CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191 98 QESCAICKDEFSL----HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 98 ~~~C~ICl~~~~~----~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~ 150 (164)
...|+||++.+.+ ++.++.++|||.||..||.+|++.+.+||+||+.+...+.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 3789999999976 2445788999999999999999989999999999876544
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-15 Score=97.05 Aligned_cols=50 Identities=28% Similarity=0.571 Sum_probs=44.8
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~ 150 (164)
...|+||++.+.+ .+.++|+|.||..||..|++.+..||+||..+.....
T Consensus 15 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 15 VPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp CCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 3789999999988 7889999999999999999999999999999865543
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.2e-15 Score=94.83 Aligned_cols=50 Identities=36% Similarity=0.766 Sum_probs=44.6
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMINPS 151 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~~ 151 (164)
...|+||++.+.+ +.++|+|.||..||.+|++.+.+||+||+.+...+..
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 4799999999877 7889999999999999999999999999998766543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.52 E-value=8.2e-15 Score=101.41 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=42.8
Q ss_pred CccccccccccccCCC---------------ccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 97 SQESCAICKDEFSLHS---------------EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~---------------~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..+.|+||++.|...- .++.++|+|.||..||.+||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3489999999998641 2566889999999999999999999999999863
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-15 Score=94.37 Aligned_cols=50 Identities=30% Similarity=0.697 Sum_probs=43.5
Q ss_pred ccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 98 QESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
...|+||++.|.+. ..++.++|+|.||..||..|++.+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 47899999999863 334788999999999999999889999999998754
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=6.6e-15 Score=91.94 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=44.9
Q ss_pred ccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
..+|+||++.+.+. +.++.++|||.||..||.+|++.+.+||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 36899999999763 44578899999999999999988999999999987654
No 17
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=95.41 Aligned_cols=55 Identities=27% Similarity=0.607 Sum_probs=45.4
Q ss_pred ccccccccccccCCCccEEeCCC-----CccchhhHHHHhcCC--CCCcccCccCCCCCCCCc
Q 031191 98 QESCAICKDEFSLHSEAKQLPCN-----HLYHSECILPCLSHQ--SSCPLCRFQLPMINPSNV 153 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~-----H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~~~~~~ 153 (164)
+..|.||++++.+++.+ ++||+ |.||..||++||..+ .+||+||..+.......+
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 37899999999877765 68996 999999999999654 599999999876654443
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-14 Score=94.73 Aligned_cols=52 Identities=25% Similarity=0.579 Sum_probs=45.4
Q ss_pred ccccccccccccCCCc-cEEeCCCCccchhhHHHHhcCC---CCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSE-AKQLPCNHLYHSECILPCLSHQ---SSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~-~~~lpC~H~Fh~~CI~~Wl~~~---~~CP~CR~~v~~~~ 149 (164)
...|+||++.|.+++. ++.++|||.||..||..|++.+ ..||+||+.+...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4789999999998775 7788999999999999999765 79999999886654
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=89.39 Aligned_cols=49 Identities=24% Similarity=0.528 Sum_probs=43.1
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhc---CCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS---HQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~CR~~v~~~~ 149 (164)
...|+||++.+.+ ++.++|+|.||..||..|++ .+..||+||+.+...+
T Consensus 20 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4799999999997 88899999999999999996 4568999999886543
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.46 E-value=2.5e-14 Score=90.63 Aligned_cols=48 Identities=31% Similarity=0.741 Sum_probs=42.1
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
+..|+||++.+.+ .++.++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4689999999875 24778999999999999999988999999998854
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=3.6e-14 Score=102.24 Aligned_cols=47 Identities=32% Similarity=0.689 Sum_probs=43.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|+||++.|.+ ++.+||||.||..||..|++.+.+||+||+++...
T Consensus 54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 579999999988 88999999999999999999999999999988644
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.45 E-value=5.3e-14 Score=90.89 Aligned_cols=48 Identities=33% Similarity=0.653 Sum_probs=41.9
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCC--CCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ--SSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~ 148 (164)
...|+||++.|.+ ++.++ |+|.||..||..|++.+ ..||+||+.+...
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 15 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4799999999998 88899 99999999999999654 6999999975443
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=88.51 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=42.8
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~ 149 (164)
...|+||++.+.+ ++.++|||.||..||.+|+ +.+..||+||+.+...+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 15 KYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4789999999987 6668999999999999999 56779999999987654
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.43 E-value=1.1e-14 Score=102.36 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=0.8
Q ss_pred CccccccccccccCC-------------C--ccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 97 SQESCAICKDEFSLH-------------S--EAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~-------------~--~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..+.|+||++.|.+. + .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 348999999999752 2 2334579999999999999999999999999864
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.7e-14 Score=91.47 Aligned_cols=46 Identities=22% Similarity=0.553 Sum_probs=42.6
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
...|+||++.+.+ ++.++|+|.||..||..|++....||+||+.+.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3689999999988 788999999999999999988999999999985
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.39 E-value=3e-13 Score=87.87 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=44.1
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~~ 149 (164)
...|+||++.|.+ ++.++|||.||..||.+|++. +.+||+||..+...+
T Consensus 8 ~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 8 YFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 3799999999988 888999999999999999976 789999999986553
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.39 E-value=8.9e-14 Score=94.94 Aligned_cols=49 Identities=31% Similarity=0.603 Sum_probs=43.5
Q ss_pred cccccccccccCCCccEE-eCCCCccchhhHHHHhcCC-CCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQ-LPCNHLYHSECILPCLSHQ-SSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~-lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~~~~ 150 (164)
..|+||++.|.+ ++. ++|||.||..||..|++.+ ..||+||..+...+.
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 23 FRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 789999999987 888 8899999999999999766 799999999865543
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=87.88 Aligned_cols=52 Identities=21% Similarity=0.521 Sum_probs=43.1
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCC--CCCcccCccCCCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ--SSCPLCRFQLPMINPSN 152 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~~~~~ 152 (164)
..|+||.+.+..++.-. .|+|.||..||.+||+.+ .+||+||+++.....+.
T Consensus 16 ~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp CBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred CcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence 79999999998754332 699999999999999877 89999999987554443
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=4e-13 Score=88.12 Aligned_cols=48 Identities=27% Similarity=0.695 Sum_probs=42.9
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC------CCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH------QSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~------~~~CP~CR~~v~~~ 148 (164)
...|+||++.+.+ ++.++|+|.||..||..|++. ...||+||..+...
T Consensus 19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4799999999988 778999999999999999966 77999999998654
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=87.87 Aligned_cols=49 Identities=29% Similarity=0.701 Sum_probs=43.3
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC------CCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH------QSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~------~~~CP~CR~~v~~~~ 149 (164)
...|+||++.+.+ ++.++|+|.||..||..|++. ...||+||..+...+
T Consensus 19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 19 EVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4799999999987 777899999999999999976 789999999987643
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.6e-13 Score=82.57 Aligned_cols=41 Identities=29% Similarity=0.654 Sum_probs=37.3
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhc---CCCCCccc
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS---HQSSCPLC 141 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~C 141 (164)
...|+||++.+.+ ++.++|||.||..||.+|++ .+..||+|
T Consensus 20 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4799999999998 88899999999999999996 56689998
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=89.65 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=42.5
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-------CCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-------QSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-------~~~CP~CR~~v~~~ 148 (164)
...|+||++.|.+ ++.++|||.||..||..|++. ...||+||..+...
T Consensus 12 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 12 EVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4789999999988 677899999999999999976 67899999998654
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.36 E-value=3.5e-13 Score=92.95 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=44.1
Q ss_pred CccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 97 SQESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
....|+||++.+.+ ++.+ +|||.||..||..|++.+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34799999999988 7787 8999999999999999899999999988654
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=91.46 Aligned_cols=47 Identities=34% Similarity=0.699 Sum_probs=42.9
Q ss_pred cccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|+||++.|.+ ++.+ +|||.||..||..|+..+..||+||..+...
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 789999999988 7777 7999999999999999899999999988653
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.35 E-value=4.1e-13 Score=94.95 Aligned_cols=52 Identities=29% Similarity=0.659 Sum_probs=45.3
Q ss_pred ccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
...|+||++.|.+. ..++.++|||.||..||.+|++.+.+||+||+.+....
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 36899999999763 44588999999999999999999999999999986654
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.33 E-value=8.7e-13 Score=93.12 Aligned_cols=46 Identities=26% Similarity=0.566 Sum_probs=41.8
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~ 147 (164)
..|+||++.|.+ ++.++|||.||..||..|+..+ ..||+||..+..
T Consensus 53 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 689999999998 8889999999999999999754 499999999866
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=1.1e-12 Score=82.39 Aligned_cols=52 Identities=23% Similarity=0.430 Sum_probs=41.9
Q ss_pred cccccccc-cccCCCcc-EEeCCCCccchhhHHHHhc-CCCCCcccCccCCCCCC
Q 031191 99 ESCAICKD-EFSLHSEA-KQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~-~~~~~~~~-~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~~~ 150 (164)
..|+||++ .+.+.... +.++|||.||..||.+|+. ....||+||+.+...+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 58999999 77775443 4578999999999999974 45789999999876543
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=80.36 Aligned_cols=41 Identities=24% Similarity=0.727 Sum_probs=36.2
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHh---cCCCCCccc
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL---SHQSSCPLC 141 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl---~~~~~CP~C 141 (164)
...|+||++.+.+ ++.++|+|.||..||.+|+ +.+..||+|
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4799999999988 6778999999999999995 456789998
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=1.3e-12 Score=90.23 Aligned_cols=49 Identities=24% Similarity=0.659 Sum_probs=42.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCC---CCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS---SCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~---~CP~CR~~v~~~~~ 150 (164)
..|+||++.+.+ ++.++|||.||..||..|+..+. .||+||..+.....
T Consensus 22 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 689999999987 66789999999999999997654 89999999876543
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=86.10 Aligned_cols=46 Identities=35% Similarity=0.721 Sum_probs=40.9
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC--CCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH--QSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~--~~~CP~CR~~v~ 146 (164)
...|+||++.|.+ ++.++ |||.||..||..|+.. +..||+||..+.
T Consensus 13 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3799999999998 88999 9999999999999953 369999999873
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.27 E-value=1.4e-12 Score=92.18 Aligned_cols=53 Identities=28% Similarity=0.649 Sum_probs=45.4
Q ss_pred CccccccccccccCC----CccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 97 SQESCAICKDEFSLH----SEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~----~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
....|+||++.|... ...+.++|||.||..||.+|++.+.+||+||..+...+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 347899999999862 34478889999999999999999999999999987654
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.26 E-value=3.9e-12 Score=92.95 Aligned_cols=47 Identities=26% Similarity=0.525 Sum_probs=42.7
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCC-CCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS-SCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~~~ 148 (164)
..|+||++.|.+ ++.++|+|.||..||..|+.... .||+||..+...
T Consensus 79 ~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 789999999988 88899999999999999997654 899999998765
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=3.2e-12 Score=94.44 Aligned_cols=46 Identities=30% Similarity=0.700 Sum_probs=41.5
Q ss_pred cccccccccccCCCccEEe-CCCCccchhhHHHHhcC-CCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSH-QSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~ 147 (164)
..|+||++.|.+ ++.+ +|||.||..||..|++. +..||+||..+..
T Consensus 55 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 699999999998 7777 89999999999999976 7899999998854
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=2.3e-12 Score=90.27 Aligned_cols=49 Identities=27% Similarity=0.548 Sum_probs=43.1
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCC-CCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQS-SCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~-~CP~CR~~v~~~~ 149 (164)
...|+||++.+.+ ++.++|||.||..||..|++.+. +||+||..+....
T Consensus 18 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 18 KYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 4799999999988 78899999999999999996654 9999999986643
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.24 E-value=1.6e-12 Score=90.56 Aligned_cols=46 Identities=28% Similarity=0.710 Sum_probs=41.8
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~ 147 (164)
..|+||++.+.+ ++.++|||.||..||..|+.. +..||+||..+..
T Consensus 16 ~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 789999999988 889999999999999999965 6799999998853
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.24 E-value=3e-12 Score=89.30 Aligned_cols=49 Identities=35% Similarity=0.735 Sum_probs=43.7
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~~~ 150 (164)
..|+||++.+.+ ++.++|||.||..||.+|++. +.+||+||..+...+.
T Consensus 24 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 24 ISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp TBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 689999999988 888999999999999999965 7899999999876543
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.19 E-value=8e-12 Score=78.56 Aligned_cols=46 Identities=24% Similarity=0.495 Sum_probs=41.2
Q ss_pred ccccccccccccCCCccEEe--CCCCc-cchhhHHHHhcCCCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSEAKQL--PCNHL-YHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l--pC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
+..|.||++.+.+ .+.+ ||||. |+..|+..|.+.+..||+||+.+.
T Consensus 8 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3689999999887 6666 99999 899999999998899999999874
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=4e-12 Score=77.78 Aligned_cols=45 Identities=31% Similarity=0.671 Sum_probs=39.5
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
...|+||++.|.+ ++.++|+|.||..||..| ...||+||+.+...
T Consensus 6 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4689999999998 788999999999999885 67899999988654
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.17 E-value=1.4e-11 Score=81.71 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=44.6
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
...|+||++-|.+ +++++|||.|++.||..|+..+.+||+||..+...
T Consensus 14 ~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 14 EFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred heECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4799999999999 99999999999999999998889999999988654
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.17 E-value=1.8e-11 Score=83.68 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=45.3
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
...|+||++.|.+ ++.++|||.|++.||..|+..+.+||+||.++....
T Consensus 29 ~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 29 EFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred hhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 4799999999999 999999999999999999998899999999987643
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.16 E-value=2.4e-11 Score=79.38 Aligned_cols=52 Identities=17% Similarity=0.423 Sum_probs=41.3
Q ss_pred ccccccccccccCCCccEEe--CCCCccchhhHHHHh-cCCCCCcccCccCCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCL-SHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~~~~ 150 (164)
+.+|+||++.+...+. ..+ +|||.||..|+..|+ .....||+||+.+.....
T Consensus 11 ~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4799999998865333 344 499999999999987 456789999999876654
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=3.5e-11 Score=81.90 Aligned_cols=49 Identities=18% Similarity=0.088 Sum_probs=45.2
Q ss_pred ccccccccccccCCCccEEeCCC-CccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCN-HLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
...|+||++.|.+ +++++|| |.|++.||..|+..+.+||+||..+....
T Consensus 22 ~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 22 EFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred hcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 4799999999999 9999999 99999999999988899999999987653
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.13 E-value=1.9e-11 Score=101.45 Aligned_cols=49 Identities=29% Similarity=0.715 Sum_probs=44.2
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhc-CCCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS-HQSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~-~~~~CP~CR~~v~~~~~ 150 (164)
..|+||++.+.+ ++.+||||.||..||..|+. .+.+||+||..+.....
T Consensus 333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 699999999987 88999999999999999997 78999999998876543
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.12 E-value=2.3e-11 Score=76.17 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=40.9
Q ss_pred ccccccccccccCCCccEEe--CCCCc-cchhhHHHHhcCCCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSEAKQL--PCNHL-YHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l--pC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
...|.||++...+ ...+ ||||. |+..|+.+|.+.+..||+||+.+.
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3689999998877 6666 99998 999999999988899999999884
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=2.1e-11 Score=88.17 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=41.5
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~ 147 (164)
...|+||++.+.+ ++.++|||.||..||.+|++.. ..||+||.++..
T Consensus 31 ~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 31 KYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4799999999998 7889999999999999999755 499999998643
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=2e-11 Score=85.35 Aligned_cols=46 Identities=24% Similarity=0.677 Sum_probs=41.1
Q ss_pred ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
...|+||++.|.+ ++.+ +|||.||..||..|+. ..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 3789999999988 8888 8999999999999987 8899999998543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.09 E-value=3.7e-11 Score=77.50 Aligned_cols=42 Identities=29% Similarity=0.709 Sum_probs=38.8
Q ss_pred cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|+||++.+.+ ++.+||||. ||..|+..| ..||+||+.+..
T Consensus 25 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 689999999988 889999999 999999999 889999998854
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.99 E-value=1.7e-10 Score=85.39 Aligned_cols=48 Identities=27% Similarity=0.550 Sum_probs=42.5
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCC-CCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQ-SSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~-~~CP~CR~~v~~~ 148 (164)
...|+||++.+.+ ++.++|||.||..||.+|++.+ ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 18 KYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4799999999998 7889999999999999999654 5999999988664
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=76.79 Aligned_cols=47 Identities=23% Similarity=0.585 Sum_probs=40.5
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCC------CCCcc--cCcc-CCC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ------SSCPL--CRFQ-LPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~------~~CP~--CR~~-v~~ 147 (164)
...|+||++.|.+ +++++ |||.|++.||..|+..+ .+||+ |+.. +..
T Consensus 7 ~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred EeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 4789999999999 99997 99999999999999643 58999 9866 543
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3.6e-10 Score=72.91 Aligned_cols=43 Identities=28% Similarity=0.676 Sum_probs=37.7
Q ss_pred cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|+||++.+.+ ++.+||+|. ||..|+... ..||+||..+...
T Consensus 26 ~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 689999999888 888999999 999999753 7899999988653
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=2.8e-10 Score=89.55 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=42.8
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~ 148 (164)
...|+||++.|.+ ++++||||.||+.||..|+.. +.+||+||.++...
T Consensus 208 ~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 208 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp TTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred ccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3799999999999 999999999999999999965 45699999988654
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.94 E-value=6.3e-10 Score=69.02 Aligned_cols=47 Identities=23% Similarity=0.584 Sum_probs=37.1
Q ss_pred ccccccccccccCCCccEEeCCC--C---ccchhhHHHHhc--CCCCCcccCccCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCN--H---LYHSECILPCLS--HQSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~--H---~Fh~~CI~~Wl~--~~~~CP~CR~~v~~ 147 (164)
...|.||+++. ++.. .+||. + .||..|+.+|+. .+.+||+||..+..
T Consensus 6 ~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 47899999973 3333 68964 4 999999999994 47899999998753
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.88 E-value=4.5e-10 Score=73.40 Aligned_cols=43 Identities=28% Similarity=0.660 Sum_probs=38.6
Q ss_pred cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.||++.+.+ ++.+||||. |+..|+..| ..||+||..+...
T Consensus 19 ~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 689999999888 899999999 999999987 3899999988654
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.87 E-value=3.1e-10 Score=92.43 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=39.2
Q ss_pred CccccccccccccCCCccE-----EeCCCCccchhhHHHHhcCC-----------CCCcccCccCC
Q 031191 97 SQESCAICKDEFSLHSEAK-----QLPCNHLYHSECILPCLSHQ-----------SSCPLCRFQLP 146 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~-----~lpC~H~Fh~~CI~~Wl~~~-----------~~CP~CR~~v~ 146 (164)
...+|+||++.+.++.++- ..+|+|.||..||.+||+.. .+||+||+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3479999999999844332 23599999999999999642 47999999774
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=68.45 Aligned_cols=44 Identities=25% Similarity=0.624 Sum_probs=38.6
Q ss_pred ccccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
...|.||++...+ ++.+||+|. ||..|+.. ...||+||..+...
T Consensus 15 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 15 SKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3689999999888 999999999 99999985 47899999988654
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.81 E-value=1.7e-09 Score=81.07 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=42.9
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC-CCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH-QSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~-~~~CP~CR~~v~~~ 148 (164)
...|+||++.|.+ ++++||||.|++.||..|+.. +.+||+||.++...
T Consensus 106 ~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 106 YLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred hhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3899999999999 999999999999999999965 45799999988654
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=3e-09 Score=71.33 Aligned_cols=47 Identities=21% Similarity=0.598 Sum_probs=38.3
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcC--------CCCCcc--cCcc
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH--------QSSCPL--CRFQ 144 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~--------~~~CP~--CR~~ 144 (164)
..+|+||++.+...+.....+|+|.||..|+..+++. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3689999999987555555579999999999999842 247999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.71 E-value=3.8e-09 Score=65.63 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=44.0
Q ss_pred cccccccccccCCCccEEe-CCCCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~ 150 (164)
..|+|+++.+.+ ++.+ ++||.|.+.||.+|++.+.+||+.+.++...+.
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 579999999998 8898 799999999999999888889999999876654
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.3e-08 Score=80.19 Aligned_cols=48 Identities=23% Similarity=0.493 Sum_probs=41.4
Q ss_pred ccccccccccccCCCccEEe-CCCCccchhhHHHHhcCC--CCCcc--cCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCLSHQ--SSCPL--CRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl~~~--~~CP~--CR~~v~~~ 148 (164)
...|+||++.|.+ ++.. .|||.|++.||..|++.+ ..||+ ||+.+...
T Consensus 181 el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 4799999999998 8875 799999999999999654 57999 99977544
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.62 E-value=8.8e-09 Score=84.48 Aligned_cols=42 Identities=31% Similarity=0.726 Sum_probs=38.7
Q ss_pred cccccccccccCCCccEEeCCCCc-cchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHL-YHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~-Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|+||++.+.+ ++.+||||. ||..|+..| ..||+||..+..
T Consensus 296 ~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 789999999988 999999999 999999998 789999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.35 E-value=2.6e-07 Score=62.29 Aligned_cols=45 Identities=20% Similarity=0.586 Sum_probs=36.4
Q ss_pred cccccccccCCCccEEeCCCCccchhhHHHHh-cCCCCCcccCccCCC
Q 031191 101 CAICKDEFSLHSEAKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLPM 147 (164)
Q Consensus 101 C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~~ 147 (164)
|.+|--++.. ..+..||+|.||.+|+..|. +..++||.|+.++..
T Consensus 4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6666555544 67889999999999999998 567899999998743
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.20 E-value=1.6e-06 Score=67.66 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=39.8
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC--CCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ--SSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~--~~CP~CR~~v~~~~ 149 (164)
..|.||.+....| ..-+ |+|.||..|+..|++.+ ..||.|+..+....
T Consensus 181 ~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 181 KICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 7899999999874 3334 99999999999999665 49999999876553
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.44 E-value=0.0018 Score=42.96 Aligned_cols=47 Identities=30% Similarity=0.591 Sum_probs=40.6
Q ss_pred cccccccccccCCCccEEeCC-CCccchhhHHHHhcCCCCCcccCccCCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPC-NHLYHSECILPCLSHQSSCPLCRFQLPMINP 150 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC-~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~~ 150 (164)
..|-.|+-.... .+.| .|.+|..|+...|.....||+|+.+++.+-.
T Consensus 29 ~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 29 QFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred ccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 889999988776 5566 6999999999999999999999999876643
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.05 E-value=0.011 Score=39.21 Aligned_cols=34 Identities=18% Similarity=0.454 Sum_probs=26.0
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHH-Hh
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILP-CL 132 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~-Wl 132 (164)
..|.||++.+.......-++|+|.|+..|+.. |.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 58999998754433333488999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.46 E-value=0.049 Score=33.69 Aligned_cols=44 Identities=20% Similarity=0.620 Sum_probs=32.1
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCC----CCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ----SSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~----~~CP~CR~~v~ 146 (164)
..|.||.+. ..+..-. |...||..|+...|... =.||.|+....
T Consensus 13 ~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 13 ARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 689999752 3344444 99999999999888543 37999976543
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.91 E-value=0.15 Score=29.39 Aligned_cols=43 Identities=26% Similarity=0.648 Sum_probs=28.0
Q ss_pred ccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCc
Q 031191 100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRF 143 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~ 143 (164)
.|.||...-..+ .+..-. |...||..|+..=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888764332 344444 9999999999754432 225888854
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.71 E-value=0.099 Score=31.74 Aligned_cols=46 Identities=20% Similarity=0.533 Sum_probs=33.2
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhc-----CCCCCcccCc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS-----HQSSCPLCRF 143 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~-----~~~~CP~CR~ 143 (164)
...|+||...+.++...+.-. |..=||..|+.--.. ..-.||.|+.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 467999999886555444544 999999999864321 3457999965
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.63 E-value=0.3 Score=44.71 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=43.6
Q ss_pred cccccccccccCCCccEEeCCC-CccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCN-HLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~-H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
..|+|=++-+.+ ++++|-| +.|-+..|.+||..+.+||+=|.++....
T Consensus 892 F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 892 FLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred hCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 789999999999 9999987 68999999999988999999999887543
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=87.70 E-value=0.19 Score=31.40 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=32.3
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhc----CCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS----HQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~----~~~~CP~CR~~v 145 (164)
..|.||..... ++..+.-. |..-||..|+..-.. ..-.||.|+..+
T Consensus 19 ~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 19 WICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp ECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred cCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 67999987753 44444444 899999999976543 234699997654
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.25 E-value=0.98 Score=29.22 Aligned_cols=33 Identities=21% Similarity=0.577 Sum_probs=21.3
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHH
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPC 131 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~W 131 (164)
++.|.||-. |..++....--|+-.||..|+.+-
T Consensus 15 D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCcccc-ccccceeccccccccccHhhcccc
Confidence 478999863 333222211127899999999985
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.06 E-value=0.38 Score=28.94 Aligned_cols=43 Identities=30% Similarity=0.709 Sum_probs=29.8
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhc----CCCCCcccCcc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS----HQSSCPLCRFQ 144 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~----~~~~CP~CR~~ 144 (164)
...|.||.+. + .+..-. |...||..|+..-+. ..=.||.|+..
T Consensus 11 ~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3689999873 2 344444 889999999987553 23369998653
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.23 E-value=0.32 Score=35.99 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=34.2
Q ss_pred cccccccccccCCCc---cEEeC-CCCccchhhHHHH------hc-----CCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSE---AKQLP-CNHLYHSECILPC------LS-----HQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~---~~~lp-C~H~Fh~~CI~~W------l~-----~~~~CP~CR~~v 145 (164)
..|+||...|.+++. .+.-. |..=||..|+.-- +. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 469999999998763 44555 9999999998421 11 145899998753
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.71 E-value=0.34 Score=32.56 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=24.7
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhc
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS 133 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~ 133 (164)
+..|.||.+.-...+.+.--.|...||..|+...+.
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 478999987633222233334999999999987763
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.97 E-value=1.6 Score=27.39 Aligned_cols=46 Identities=17% Similarity=0.515 Sum_probs=31.4
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHh-----cCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-----SHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-----~~~~~CP~CR~~v 145 (164)
.-| ||...+.++...+.-. |..=||..|+.--- ...-.||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 456 8988876444444444 99999999994321 1456799998754
No 85
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.82 E-value=1 Score=29.28 Aligned_cols=47 Identities=26% Similarity=0.661 Sum_probs=32.5
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~v~~~ 148 (164)
...|.+|.+. | .+..-. |.-.||..|+..=+.. .-.||.|+..-..+
T Consensus 25 ~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~k 76 (88)
T 1fp0_A 25 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 76 (88)
T ss_dssp SSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSC
T ss_pred CCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccc
Confidence 4789999964 3 344444 8899999999776533 23699998654433
No 86
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=81.81 E-value=1.2 Score=25.70 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=28.9
Q ss_pred ccccccccccCCCccEEe--CCCCccchhhHHHHh----cCCCCCcccC
Q 031191 100 SCAICKDEFSLHSEAKQL--PCNHLYHSECILPCL----SHQSSCPLCR 142 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl----~~~~~CP~CR 142 (164)
.|.+|...+.++...+.- .|..=||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477898888665544443 388899999985321 3556788885
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.17 E-value=0.23 Score=29.37 Aligned_cols=42 Identities=26% Similarity=0.732 Sum_probs=27.9
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCC----CCCcccCc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ----SSCPLCRF 143 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~----~~CP~CR~ 143 (164)
+..|.||.+. + .+..-. |...||..|+..-+... -.||.|+.
T Consensus 9 ~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3689999874 3 344444 89999999998654322 24777743
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.15 E-value=0.53 Score=34.45 Aligned_cols=44 Identities=25% Similarity=0.674 Sum_probs=31.1
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCccC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQL 145 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~v 145 (164)
+..|.+|.+. |+ +..-. |...||..|+..-+.. .=.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3679999853 33 44444 8999999999776643 23699998754
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.04 E-value=0.64 Score=31.36 Aligned_cols=45 Identities=27% Similarity=0.590 Sum_probs=29.8
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~ 143 (164)
..|.||.+.-.+++.+..-. |...||..|+..-|.. .=.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 47888887533333444444 9999999999765532 236888864
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.77 E-value=1.3 Score=26.99 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=25.2
Q ss_pred ccccccccccccCCCccEEe--CCCCccchhhHH
Q 031191 98 QESCAICKDEFSLHSEAKQL--PCNHLYHSECIL 129 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~ 129 (164)
...|.+|...+.+++..+.- .|..-||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 37899999999876655554 499999999983
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=79.64 E-value=0.63 Score=30.20 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=33.0
Q ss_pred cccccccccccc-CCCccEEeC-CCCccchhhHHHHh--cCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFS-LHSEAKQLP-CNHLYHSECILPCL--SHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~-~~~~~~~lp-C~H~Fh~~CI~~Wl--~~~~~CP~CR~~v~~~ 148 (164)
...|.||.+.-. +++.+..-. |.-.||..|+..-+ ...=.||.|+......
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 378999987642 223344444 88999999997533 2233688887654443
No 92
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.61 E-value=0.36 Score=30.59 Aligned_cols=44 Identities=30% Similarity=0.615 Sum_probs=27.1
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcC-----CCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH-----QSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~-----~~~CP~CR~ 143 (164)
..|.||...-. +..+..-. |...||..|+..=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 46778876422 23344444 8999999999854321 225777754
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.53 E-value=0.73 Score=27.65 Aligned_cols=43 Identities=35% Similarity=0.709 Sum_probs=29.0
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCcc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQ 144 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~ 144 (164)
...|.||.+. + .+..-. |...||..|+..-+.. .=.||.|+..
T Consensus 9 ~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3689999852 2 233333 8899999999865432 2359999664
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.92 E-value=1.1 Score=33.45 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=31.1
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcCC----CCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQ----SSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~----~~CP~CR~~v~ 146 (164)
...|.+|.+. | .+..-. |...||..|+...+... =.||.|+..-.
T Consensus 7 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 7 EDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3689999753 2 233334 88999999998766432 36999987543
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.83 E-value=0.99 Score=28.05 Aligned_cols=46 Identities=26% Similarity=0.355 Sum_probs=29.9
Q ss_pred ccccccccccc-cCCCccEEeC-CCCccchhhHHHHh--cCCCCCcccCc
Q 031191 98 QESCAICKDEF-SLHSEAKQLP-CNHLYHSECILPCL--SHQSSCPLCRF 143 (164)
Q Consensus 98 ~~~C~ICl~~~-~~~~~~~~lp-C~H~Fh~~CI~~Wl--~~~~~CP~CR~ 143 (164)
...|.||.+.- .+++.+..-. |.-.||..|+..-. +..=.||.|+.
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 47899998764 2334444445 99999999987532 22235777754
No 96
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.30 E-value=1.7 Score=27.62 Aligned_cols=34 Identities=24% Similarity=0.640 Sum_probs=25.7
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHH
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPC 131 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~W 131 (164)
...|.+|...|.....--.-. ||.+|+..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 468999999998744333444 9999999997654
No 97
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.13 E-value=3.2 Score=29.37 Aligned_cols=42 Identities=26% Similarity=0.615 Sum_probs=30.1
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhc-----------CCCCCcccCc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS-----------HQSSCPLCRF 143 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~-----------~~~~CP~CR~ 143 (164)
+..|.+|.+. ..+..-. |-..||..||..=+. ..=.||.|+.
T Consensus 63 ~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4789999873 3344444 899999999997552 2336999964
No 98
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=77.12 E-value=0.37 Score=29.93 Aligned_cols=43 Identities=28% Similarity=0.609 Sum_probs=25.2
Q ss_pred ccccccccccCCCccEEeC-CCCccchhhHHHHhcC-----CCCCcccCc
Q 031191 100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH-----QSSCPLCRF 143 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~-----~~~CP~CR~ 143 (164)
.|.||...- ++..+..-. |...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 355666432 222343444 8899999999854422 226888764
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.62 E-value=3 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=21.5
Q ss_pred ccccccccccc-----CCCccEEeC-CCCccchhhHH
Q 031191 99 ESCAICKDEFS-----LHSEAKQLP-CNHLYHSECIL 129 (164)
Q Consensus 99 ~~C~ICl~~~~-----~~~~~~~lp-C~H~Fh~~CI~ 129 (164)
..|.+|+..-. .++..+.-. |+..||..|+.
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 57999987531 223344444 99999999995
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=74.11 E-value=1.5 Score=31.56 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=31.4
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHh-----cCCCCCcccCcc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-----SHQSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-----~~~~~CP~CR~~ 144 (164)
.-| +|.....++...+.-. |..-||..|+.--. ...-.||.|+..
T Consensus 9 ~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 9 LYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred cEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 578 9998876544455554 99999999995321 234579999763
No 101
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=73.59 E-value=1.2 Score=27.01 Aligned_cols=43 Identities=28% Similarity=0.672 Sum_probs=29.7
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCcc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQ 144 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~ 144 (164)
+..|.||.+. + .+..-. |...||..|+..-+.. .=.||.|+..
T Consensus 8 ~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4689999863 2 344444 9999999999865432 2359999653
No 102
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=71.06 E-value=3.9 Score=27.41 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=33.3
Q ss_pred ccccccccccccCCCccEEeC---CCCccchhhHHHHhcCC----CCCcccCccCCCCCCCCcccccccC
Q 031191 98 QESCAICKDEFSLHSEAKQLP---CNHLYHSECILPCLSHQ----SSCPLCRFQLPMINPSNVVSWACSS 160 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp---C~H~Fh~~CI~~Wl~~~----~~CP~CR~~v~~~~~~~~~~~~~~~ 160 (164)
+..|.+|.+ .| .++.-. |-..||..|+. |... =.||.|+-.+..+... .....+.+
T Consensus 15 ~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~~~-~~C~~Cp~ 77 (107)
T 4gne_A 15 EDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAAV-SFCEFCPH 77 (107)
T ss_dssp CSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSBCC-EECSSSSC
T ss_pred CCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCCCC-cCcCCCCc
Confidence 478999983 22 233333 77899999997 5332 2588776655554432 34444443
No 103
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=69.17 E-value=0.87 Score=27.11 Aligned_cols=43 Identities=28% Similarity=0.742 Sum_probs=29.3
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCcc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQ 144 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~ 144 (164)
+..|.||... | .+..-. |...||..|+..-+.. .-.||.|+..
T Consensus 5 ~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 4689999874 3 344444 8999999999865432 2358888654
No 104
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=69.10 E-value=1.2 Score=34.10 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=24.8
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcC-----CCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH-----QSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~-----~~~CP~CR~ 143 (164)
..|.+|...-. +.....-. |...||..|+..=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 35777765422 22344444 9999999999854422 225998865
No 105
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=69.07 E-value=2.3 Score=28.38 Aligned_cols=47 Identities=26% Similarity=0.489 Sum_probs=33.2
Q ss_pred cccccccccccCCCccEEe--CCCCccchhhHHHHh----------cCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCL----------SHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl----------~~~~~CP~CR~~v 145 (164)
..|.||...+.++...+.- .|..=||..|+.--- ...-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4799999998775555444 388999999984211 1345799997654
No 106
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=68.96 E-value=1 Score=29.72 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=28.9
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhc---CCCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLS---HQSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~---~~~~CP~CR~ 143 (164)
..| ||-.....+..+.--.|..-||..|+..=+. ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 467 8877665544333333999999999865332 2347999964
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.37 E-value=3 Score=25.02 Aligned_cols=47 Identities=30% Similarity=0.670 Sum_probs=31.2
Q ss_pred ccccccccccccC-CCccEEeC-CCCccchhhHHHHhc-------CCCCCcccCcc
Q 031191 98 QESCAICKDEFSL-HSEAKQLP-CNHLYHSECILPCLS-------HQSSCPLCRFQ 144 (164)
Q Consensus 98 ~~~C~ICl~~~~~-~~~~~~lp-C~H~Fh~~CI~~Wl~-------~~~~CP~CR~~ 144 (164)
...|.||...... +..+..-. |...||..|+..=+. ..=.||.|+..
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4689999987543 23344444 999999999875331 22368888654
No 108
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=68.19 E-value=3.7 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.471 Sum_probs=26.2
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHh
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL 132 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl 132 (164)
..|.+|...|.....--.-. ||++||..|...+.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 68999999998754433444 99999999977654
No 109
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.82 E-value=3.4 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=27.9
Q ss_pred cccccccccccCCCccEEeC--CCCccchhhHHHHhcC
Q 031191 99 ESCAICKDEFSLHSEAKQLP--CNHLYHSECILPCLSH 134 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp--C~H~Fh~~CI~~Wl~~ 134 (164)
..|.+|.+.+++...+ ..| =.|.||..|-...++.
T Consensus 16 l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 16 LCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred eEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 6899999999985544 444 4799999999988853
No 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.73 E-value=1.3 Score=28.66 Aligned_cols=49 Identities=22% Similarity=0.571 Sum_probs=33.3
Q ss_pred cccccccccccCC-CccEEeC-CCCccchhhHHHHhc--------CCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLH-SEAKQLP-CNHLYHSECILPCLS--------HQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~-~~~~~lp-C~H~Fh~~CI~~Wl~--------~~~~CP~CR~~v~~ 147 (164)
..|.||...-... +.+..-. |...||..|+..-|. ..=.|+.|+.....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 6899999864432 3344444 999999999986543 22369999765433
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=67.25 E-value=0.75 Score=29.13 Aligned_cols=43 Identities=28% Similarity=0.628 Sum_probs=24.4
Q ss_pred ccccccccccCCCccEEeC-CCCccchhhHHHHhcC----C-CCCcccCc
Q 031191 100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----Q-SSCPLCRF 143 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~-~~CP~CR~ 143 (164)
.|.||...-.. +.+..-. |...||..|+..-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 45555543221 2233333 8899999999865532 1 26888865
No 112
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.00 E-value=2.3 Score=28.63 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=21.8
Q ss_pred cccccccccccC------CCccEEe-CCCCccchhhHHHH
Q 031191 99 ESCAICKDEFSL------HSEAKQL-PCNHLYHSECILPC 131 (164)
Q Consensus 99 ~~C~ICl~~~~~------~~~~~~l-pC~H~Fh~~CI~~W 131 (164)
..|.||+..-.. ++..+.- .|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 368999875421 2233333 38999999998754
No 113
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.63 E-value=0.55 Score=30.71 Aligned_cols=45 Identities=27% Similarity=0.556 Sum_probs=30.4
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcC----CCCCcccCcc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSH----QSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~----~~~CP~CR~~ 144 (164)
..|.||...-.. +.++.-. |...||..|+..=|.. .=.||.|+..
T Consensus 17 ~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 679999876432 2344444 9999999999754422 2259999653
No 114
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.53 E-value=4.1 Score=27.97 Aligned_cols=33 Identities=21% Similarity=0.628 Sum_probs=25.1
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHH
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPC 131 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~W 131 (164)
..|.+|...|.....--.-. ||++||..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 68999999998744333444 9999999996543
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.16 E-value=8.2 Score=26.76 Aligned_cols=42 Identities=26% Similarity=0.623 Sum_probs=28.4
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHh------c-----CCCCCcccCc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL------S-----HQSSCPLCRF 143 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl------~-----~~~~CP~CR~ 143 (164)
+..|.||-+. .++..-. |-..||..||.+-+ + ..=.|++|+-
T Consensus 57 ~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4679999864 2233333 88999999999742 1 2237999954
No 116
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=64.82 E-value=5.5 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=26.0
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHH
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPC 131 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~W 131 (164)
...|.+|...|..-..--.-. ||++||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 478999999998754433444 9999999997654
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=64.27 E-value=12 Score=24.40 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=35.6
Q ss_pred cccccccccccCCCc----cEEeCCCCccchhhHHHHh-cCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSE----AKQLPCNHLYHSECILPCL-SHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~----~~~lpC~H~Fh~~CI~~Wl-~~~~~CP~CR~~v~ 146 (164)
..|.||=+++..... +....|+--.|+.|..-=. +.+..||-|+..+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 689999999764332 2223488888999986544 67789999999885
No 118
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.24 E-value=2.6 Score=25.28 Aligned_cols=42 Identities=21% Similarity=0.516 Sum_probs=27.9
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCccc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLC 141 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~C 141 (164)
..|--|+..|.+.. ...-+ |++.|+.+|=.---+.=..||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 36999999986422 12344 99999999933221444679987
No 119
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.37 E-value=6.6 Score=24.37 Aligned_cols=41 Identities=22% Similarity=0.513 Sum_probs=29.8
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
..|..|-..+..++.+. --+..||..| ..|-.|+..|....
T Consensus 16 ~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 16 DLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp CBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 68999999987766554 2477899888 34778877775543
No 120
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.31 E-value=1.5 Score=27.35 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=30.1
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHh---------cCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL---------SHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl---------~~~~~CP~CR~~v 145 (164)
.-| ||...+..+..+.--.|..=||..|+.--. ...-.||.|+..-
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 456 898877643333333499999999994211 2467899997643
No 121
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.14 E-value=18 Score=22.57 Aligned_cols=41 Identities=20% Similarity=0.422 Sum_probs=28.7
Q ss_pred CccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 97 SQESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 97 ~~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
....|.-|-+.+. ++. +..-+..||..| ..|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPF--LVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCC-SCE--EEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCccCCCEec-ceE--EEECCccccccC--------CccCCCCCCCCCC
Confidence 3478999999885 332 333578899877 3588888887643
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=62.75 E-value=3.3 Score=25.19 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=6.2
Q ss_pred cccccccccccC
Q 031191 99 ESCAICKDEFSL 110 (164)
Q Consensus 99 ~~C~ICl~~~~~ 110 (164)
..|..|...+..
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 445555555544
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.73 E-value=1.1 Score=30.95 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=30.3
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHhcCCCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLSHQSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~~~~~CP~CR~ 143 (164)
..|..|-..|..-..--.-. ||.+||..|..........|-.|..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 58999999998633333333 9999999997766555667777744
No 124
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.55 E-value=4.7 Score=24.49 Aligned_cols=40 Identities=18% Similarity=0.410 Sum_probs=29.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|..|-+.+..++.+. --+..||..| ..|..|+..|...
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 58999999988766543 3477888877 3588888887643
No 125
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.34 E-value=5.6 Score=25.53 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=32.7
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHh-------cCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL-------SHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl-------~~~~~CP~CR~~v~ 146 (164)
..|.+|...|..-..--.-. ||.+||..|....+ +....|-.|...+.
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 68999999998743333333 99999999976543 12346777755443
No 126
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.16 E-value=8.4 Score=25.02 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=26.6
Q ss_pred cccccccccccCCCccEEeC--CC-CccchhhHHHHhc----CCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLP--CN-HLYHSECILPCLS----HQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp--C~-H~Fh~~CI~~Wl~----~~~~CP~CR~~v 145 (164)
.-| ||..... ++.+.-=. |. .-||..|+. |. .+-.||.|+..-
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 456 9988653 43332223 44 579999997 42 234799997643
No 127
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.61 E-value=1.3 Score=27.36 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHHHh----cCCCCCcccCcc
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL----SHQSSCPLCRFQ 144 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl----~~~~~CP~CR~~ 144 (164)
..| ||.....+++..+.-. |..=||..|+.--- ...-.||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 578 7988776665444444 89999999986432 234579999754
No 128
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=61.41 E-value=1.6 Score=26.73 Aligned_cols=44 Identities=20% Similarity=0.428 Sum_probs=28.1
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHHh---cCCCCCcccCc
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPCL---SHQSSCPLCRF 143 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl---~~~~~CP~CR~ 143 (164)
...| ||..... ++..+.-. |..=||..|+.--- ...-.||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3578 9987665 33333433 99999999985422 23346888754
No 129
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.70 E-value=6.9 Score=24.72 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=23.8
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHH
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILP 130 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~ 130 (164)
..|.+|...|..-..--.-. ||.+||..|...
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 68999999997643333333 999999999654
No 130
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=59.51 E-value=2.3 Score=31.29 Aligned_cols=44 Identities=27% Similarity=0.665 Sum_probs=29.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcC----CCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSH----QSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~----~~~CP~CR~~v 145 (164)
..|.+|.+. |+-+..-.|...||..|+..=+.. .-.||.|+..-
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 579999854 332322238899999999765432 23699997653
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.34 E-value=6.1 Score=24.28 Aligned_cols=32 Identities=25% Similarity=0.597 Sum_probs=23.9
Q ss_pred cccccccccccCCCccEEeC-CCCccchhhHHH
Q 031191 99 ESCAICKDEFSLHSEAKQLP-CNHLYHSECILP 130 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~ 130 (164)
..|.+|...|..-..--.-. ||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 58999999998743333334 999999999654
No 132
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=56.77 E-value=8.1 Score=27.80 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=25.4
Q ss_pred cCCCccccccccccccCCCccEEe---CCCCccchhhHHHHhc
Q 031191 94 ESLSQESCAICKDEFSLHSEAKQL---PCNHLYHSECILPCLS 133 (164)
Q Consensus 94 ~~~~~~~C~ICl~~~~~~~~~~~l---pC~H~Fh~~CI~~Wl~ 133 (164)
++..+.-|.||-+. ..+..- .|...||..||+.++-
T Consensus 75 eDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 75 DDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 33345789999863 334443 3889999999999884
No 133
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.74 E-value=4.1 Score=24.95 Aligned_cols=29 Identities=24% Similarity=0.682 Sum_probs=23.2
Q ss_pred cccccccccccCCCccEEeCC-CCccchhhHHHH
Q 031191 99 ESCAICKDEFSLHSEAKQLPC-NHLYHSECILPC 131 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC-~H~Fh~~CI~~W 131 (164)
.-|.||.++ - .++.+.| +-+||..|...-
T Consensus 9 pWC~ICneD-A---tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 9 PWCCICNED-A---TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SSCTTTCSC-C---CEEETTTTSEEECSSHHHHH
T ss_pred CeeEEeCCC-C---eEEecCCCCceehHHHHHHH
Confidence 679999997 2 3777889 789999997663
No 134
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.12 E-value=2.6 Score=26.44 Aligned_cols=46 Identities=20% Similarity=0.494 Sum_probs=30.6
Q ss_pred cccccccccccCCCccEEe--CCCCccchhhHHHHh---------cCCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCL---------SHQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl---------~~~~~CP~CR~~v 145 (164)
..| ||-.....+..+.-= .|..=||..|+.--- ..+-.||.|+..-
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 567 788875555444444 599999999995321 1345799997643
No 135
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=55.83 E-value=5.5 Score=27.76 Aligned_cols=32 Identities=19% Similarity=0.502 Sum_probs=22.8
Q ss_pred cccccccccccc-CCCccEE-eCCCCccchhhHH
Q 031191 98 QESCAICKDEFS-LHSEAKQ-LPCNHLYHSECIL 129 (164)
Q Consensus 98 ~~~C~ICl~~~~-~~~~~~~-lpC~H~Fh~~CI~ 129 (164)
...|.+|...|. .+...+. ..|+|.+|..|-.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 479999999994 3333334 3499999988843
No 136
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=55.04 E-value=4.3 Score=26.93 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=10.6
Q ss_pred ccchhhHHHHhc
Q 031191 122 LYHSECILPCLS 133 (164)
Q Consensus 122 ~Fh~~CI~~Wl~ 133 (164)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999994
No 137
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.69 E-value=12 Score=22.41 Aligned_cols=42 Identities=29% Similarity=0.599 Sum_probs=29.2
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
...|.-|-+.+..++.+... -+..||..| ..|-.|++.+...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS-NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE-TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEe-CccEecccc--------CeECCCCCCCCCC
Confidence 36899999998865555333 467888877 3477887777543
No 138
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=54.39 E-value=3.7 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=19.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhh
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSEC 127 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~C 127 (164)
+.|+.|-..+...+++.. =+..||+.|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~--~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC--LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS--SSSCCCGGG
T ss_pred CcCCccCCEEecceeEEE--CCeEecccC
Confidence 478889888877544432 478899887
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.33 E-value=6.2 Score=29.48 Aligned_cols=34 Identities=18% Similarity=0.585 Sum_probs=25.7
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHH
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPC 131 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~W 131 (164)
...|.+|...|.....--.-. ||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 379999999998644444444 9999999996553
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.93 E-value=11 Score=22.41 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=28.2
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-+.+..++.+ +..-+..||..| ..|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCCCC
Confidence 5788999888864433 222577888877 3578888777543
No 141
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.55 E-value=5.6 Score=24.50 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=25.9
Q ss_pred cccccccccccCCCccEEeC--CC-CccchhhHHHHhc----CCCCCcccCccC
Q 031191 99 ESCAICKDEFSLHSEAKQLP--CN-HLYHSECILPCLS----HQSSCPLCRFQL 145 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp--C~-H~Fh~~CI~~Wl~----~~~~CP~CR~~v 145 (164)
.-| ||..... |+.+.-=. |. .-||..|+. |. .+-.||.|+..-
T Consensus 17 ~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 17 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 467 8987643 33221112 54 589999997 42 233699997643
No 142
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.02 E-value=8 Score=23.91 Aligned_cols=38 Identities=26% Similarity=0.584 Sum_probs=29.0
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|.-|-+.+..++.+.. -+..||..| ..|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 689999999987765544 367888877 45888888775
No 143
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=52.21 E-value=5.4 Score=26.41 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=10.7
Q ss_pred ccchhhHHHHhc
Q 031191 122 LYHSECILPCLS 133 (164)
Q Consensus 122 ~Fh~~CI~~Wl~ 133 (164)
.||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 144
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.08 E-value=12 Score=22.09 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=27.9
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|..|-+.+..++.++.. =+..||..| ..|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY-KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE-TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE-CcCeecccC--------CcccccCCccCCC
Confidence 5788999888875544332 467788777 3477887777543
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.56 E-value=7 Score=29.45 Aligned_cols=34 Identities=18% Similarity=0.603 Sum_probs=25.8
Q ss_pred ccccccccccccCCCccEEeC-CCCccchhhHHHH
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSECILPC 131 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~W 131 (164)
...|.+|...|..-..--... ||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 369999999998744333444 9999999997654
No 146
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=51.43 E-value=5 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=18.5
Q ss_pred eCCCCccchhhHHHHhcCCCCCcccCccCCCCC
Q 031191 117 LPCNHLYHSECILPCLSHQSSCPLCRFQLPMIN 149 (164)
Q Consensus 117 lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~~ 149 (164)
..||+.|. .=+.....||.|+.+-....
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 44899991 22245578999998765543
No 147
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=51.20 E-value=3.4 Score=20.95 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=9.0
Q ss_pred CCCCcccCccCCC
Q 031191 135 QSSCPLCRFQLPM 147 (164)
Q Consensus 135 ~~~CP~CR~~v~~ 147 (164)
+..||+|+...++
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4568999876644
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.32 E-value=17 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.395 Sum_probs=29.0
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|..|-+.+..++.++. .=+..||..| ..|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE-YKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE-CSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEE-ECcccccccc--------CchhhCCCccCCC
Confidence 589999998887655432 2477888877 3578888877543
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.29 E-value=25 Score=20.68 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=28.0
Q ss_pred cccccccccccC--CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSL--HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~--~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|.-|-+.+.. ++.++. --+..||..| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~-a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS-FEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE-CSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEE-ECCcccCccc--------CEeccCCCcCCC
Confidence 579999998886 333332 2578899877 358888887753
No 150
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.70 E-value=20 Score=21.17 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=24.3
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|..|-+.+...+..+. .=+..||..| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVV-ALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEE-CSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEE-ECCCeEcccC--------CcccccCCcCC
Confidence 568888877765433322 2467778766 34777777764
No 151
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=52.95 E-value=4 Score=18.39 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=10.2
Q ss_pred CCCCCCcchhHHh
Q 031191 18 EVLCPQWQTHFLE 30 (164)
Q Consensus 18 ~~~Cp~C~~~~le 30 (164)
.+.|+.|+..|..
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4679999998854
No 152
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=46.72 E-value=5.5 Score=21.07 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.3
Q ss_pred cccccccccccC
Q 031191 99 ESCAICKDEFSL 110 (164)
Q Consensus 99 ~~C~ICl~~~~~ 110 (164)
..|+||+..+..
T Consensus 6 FiCP~C~~~l~s 17 (34)
T 3mjh_B 6 FICPQCMKSLGS 17 (34)
T ss_dssp EECTTTCCEESS
T ss_pred cCCcHHHHHcCC
Confidence 567777776655
No 153
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=46.27 E-value=4.2 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=0.0
Q ss_pred cccccccccccCCCccEEe-CCCCccchhhHHHHh
Q 031191 99 ESCAICKDEFSLHSEAKQL-PCNHLYHSECILPCL 132 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-pC~H~Fh~~CI~~Wl 132 (164)
..|.+|...|......-.. .||++||..|-..++
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -----------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 7899999999763322223 399999999987664
No 154
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.40 E-value=28 Score=21.59 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=28.6
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-+.+.. . .+.--+..||..| ..|-.|+..|...
T Consensus 26 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 26 PLCDKCGSGIVG-A--VVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CBCTTTCCBCCS-C--CEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCcccCCCEecc-c--EEEECCceECccC--------CEecCCCCCCCCC
Confidence 689999998885 2 2333678899887 3588888887654
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.84 E-value=20 Score=21.49 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=26.3
Q ss_pred cccccccccccC--CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSL--HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~--~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|..|-+.+.. +.+. +.--+..||..|. .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCC
Confidence 578999988885 2333 2225778898873 4777777665
No 156
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=43.85 E-value=5.9 Score=24.40 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=14.5
Q ss_pred HHHhcCCCCCcccCccCCCC
Q 031191 129 LPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 129 ~~Wl~~~~~CP~CR~~v~~~ 148 (164)
+.||..--.||+|+.++.-.
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 45666777899999987543
No 157
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=43.64 E-value=4.4 Score=23.18 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=24.3
Q ss_pred cccccccCCCccEEeC-CCCccchhhHHHHh---cCCCCCcccCc
Q 031191 103 ICKDEFSLHSEAKQLP-CNHLYHSECILPCL---SHQSSCPLCRF 143 (164)
Q Consensus 103 ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl---~~~~~CP~CR~ 143 (164)
||..... +...+.-. |..=||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 33333333 89999999985322 23456888864
No 158
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=43.52 E-value=22 Score=29.01 Aligned_cols=46 Identities=20% Similarity=0.547 Sum_probs=28.8
Q ss_pred cccccccccccCCCccEEe-CCCCc--cchhhHHHHh--cCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQL-PCNHL--YHSECILPCL--SHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-pC~H~--Fh~~CI~~Wl--~~~~~CP~CR~~v~~ 147 (164)
-.|+|=...+.. +..- .|.|. |-..=+.... ...-.||+|.+.+..
T Consensus 250 L~CPlS~~ri~~---PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKY---PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSS---EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCccccccc---cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 678887777766 5554 49998 4433333322 233479999887643
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=43.41 E-value=10 Score=22.35 Aligned_cols=41 Identities=29% Similarity=0.663 Sum_probs=29.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-..+..++.++. .=+..||..|. .|-.|...+...
T Consensus 12 ~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 689999999887665433 24677888774 578888777544
No 160
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=43.16 E-value=3.8 Score=24.31 Aligned_cols=40 Identities=23% Similarity=0.568 Sum_probs=23.3
Q ss_pred cccccccccccCCCccEEe-C--CC-CccchhhHHHHhcC----CCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQL-P--CN-HLYHSECILPCLSH----QSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-p--C~-H~Fh~~CI~~Wl~~----~~~CP~CR~ 143 (164)
.-| ||..... |+ .+.- . |. .-||..|+. |.. +-.||.|+.
T Consensus 11 ~~C-~C~~~~~-g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 455 8987642 32 2222 2 43 579999997 432 336888854
No 161
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=42.83 E-value=6.4 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.439 Sum_probs=29.4
Q ss_pred ccccccccccCCCccEEeC-CCCccchhhHHHHhc-----CCCCCcccCcc
Q 031191 100 SCAICKDEFSLHSEAKQLP-CNHLYHSECILPCLS-----HQSSCPLCRFQ 144 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lp-C~H~Fh~~CI~~Wl~-----~~~~CP~CR~~ 144 (164)
.--||...+..+...+.-. |.-=||..|+.---. ..-.||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3348887765444444444 999999999954321 34579999764
No 162
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.82 E-value=5.1 Score=24.55 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=15.3
Q ss_pred HHHhcCCCCCcccCccCCCC
Q 031191 129 LPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 129 ~~Wl~~~~~CP~CR~~v~~~ 148 (164)
++||..--.||+|+.++.-.
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 46777778899999987543
No 163
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=42.19 E-value=4.3 Score=24.06 Aligned_cols=41 Identities=22% Similarity=0.503 Sum_probs=24.0
Q ss_pred cccccccccccCCCccEEeC--CC-CccchhhHHHHhcC----CCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQLP--CN-HLYHSECILPCLSH----QSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lp--C~-H~Fh~~CI~~Wl~~----~~~CP~CR~ 143 (164)
.-| ||.+.. .|+.+.-=. |. .-||..|+. |.. +-.||.|+.
T Consensus 10 ~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 456 898764 232222122 54 689999997 422 336888854
No 164
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.07 E-value=26 Score=20.48 Aligned_cols=38 Identities=29% Similarity=0.576 Sum_probs=25.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|.-|-+.+.. + .+.--+..||..| ..|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-G--GVTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-S--EEESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc-c--eEEECccccCCCC--------CccCCCCCcCCc
Confidence 578888888764 2 2333577888777 347788877743
No 165
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=41.04 E-value=13 Score=17.76 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=11.7
Q ss_pred CCCCCCcchhHHhhh
Q 031191 18 EVLCPQWQTHFLEHM 32 (164)
Q Consensus 18 ~~~Cp~C~~~~le~~ 32 (164)
.+.|+.|+..|....
T Consensus 2 p~~C~~C~k~f~~~~ 16 (32)
T 2kfq_A 2 AFACPACPKRFMRSD 16 (32)
T ss_dssp CSSSSSSCTTHHHHH
T ss_pred CCCCCCCCcccCCHH
Confidence 478999999996543
No 166
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.79 E-value=25 Score=28.53 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=29.1
Q ss_pred cccccccccccCCCccEEe-CCCCc--cchhhHHHHhc--CCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQL-PCNHL--YHSECILPCLS--HQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-pC~H~--Fh~~CI~~Wl~--~~~~CP~CR~~v~~ 147 (164)
-.|+|=...+.. +..- .|.|. |-..=+..... ..-.||+|.+.+..
T Consensus 216 L~CPlS~~ri~~---P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTI---PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSS---EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceecc---CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 568887777766 5554 49998 54433333322 23479999987753
No 167
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.75 E-value=13 Score=26.50 Aligned_cols=31 Identities=26% Similarity=0.619 Sum_probs=23.1
Q ss_pred ccccccccccccC--CCccEEeCCCCccchhhH
Q 031191 98 QESCAICKDEFSL--HSEAKQLPCNHLYHSECI 128 (164)
Q Consensus 98 ~~~C~ICl~~~~~--~~~~~~lpC~H~Fh~~CI 128 (164)
+..|.+|...|.- +-......|+|.+|..|=
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4799999998753 333444459999999985
No 168
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=40.59 E-value=23 Score=20.49 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=27.2
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|+.|-+.+. ++ .+..=+..||..| ..|-.|+..+..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 57999998887 33 2333578899877 358888887754
No 169
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=46.39 E-value=6 Score=18.19 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=10.0
Q ss_pred CCCCCCcchhHHh
Q 031191 18 EVLCPQWQTHFLE 30 (164)
Q Consensus 18 ~~~Cp~C~~~~le 30 (164)
.+.|+.|+..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2lvt_A 2 PCQCVMCGKAFTQ 14 (29)
Confidence 4679999998843
No 170
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=40.00 E-value=20 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=18.2
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHh
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCL 132 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl 132 (164)
..|..|-..+..++..... =+..||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEee-CCEEEcHHHhHHHh
Confidence 5666666666444433222 35566666666654
No 171
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=39.27 E-value=6.7 Score=17.81 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=9.1
Q ss_pred CCCCCCcchhHH
Q 031191 18 EVLCPQWQTHFL 29 (164)
Q Consensus 18 ~~~Cp~C~~~~l 29 (164)
.+.|+.|+..|.
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 467999988773
No 172
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=38.89 E-value=7.1 Score=17.77 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=8.9
Q ss_pred CCCCCCcchhH
Q 031191 18 EVLCPQWQTHF 28 (164)
Q Consensus 18 ~~~Cp~C~~~~ 28 (164)
.+.|+.|+..|
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1klr_A 2 TYQCQYCEFRS 12 (30)
T ss_dssp CCCCSSSSCCC
T ss_pred CccCCCCCCcc
Confidence 46899998877
No 173
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=38.16 E-value=8.2 Score=17.35 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=8.8
Q ss_pred CCCCCCcchhH
Q 031191 18 EVLCPQWQTHF 28 (164)
Q Consensus 18 ~~~Cp~C~~~~ 28 (164)
.+.|+.|+..|
T Consensus 2 ~~~C~~C~~~f 12 (29)
T 2m0e_A 2 EHKCPHCDKKF 12 (29)
T ss_dssp CCCCSSCCCCC
T ss_pred CCcCCCCCccc
Confidence 46799998877
No 174
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=38.11 E-value=6.2 Score=17.69 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=7.9
Q ss_pred CCCCCcchhH
Q 031191 19 VLCPQWQTHF 28 (164)
Q Consensus 19 ~~Cp~C~~~~ 28 (164)
+.|+.|+..|
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 5688888776
No 175
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=37.98 E-value=20 Score=29.46 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=24.4
Q ss_pred cCCCccccccccccccCCCccEE-e--CCCCccchhhHHHHh
Q 031191 94 ESLSQESCAICKDEFSLHSEAKQ-L--PCNHLYHSECILPCL 132 (164)
Q Consensus 94 ~~~~~~~C~ICl~~~~~~~~~~~-l--pC~H~Fh~~CI~~Wl 132 (164)
++..+..|.+|-+. .++.. = .|...||..||+.++
T Consensus 89 ~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhc
Confidence 33344788888763 22333 2 488999999999998
No 176
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.46 E-value=32 Score=20.89 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=27.0
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-+.+. +..+ .--+..||..| ..|-.|+..|...
T Consensus 16 ~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 16 YICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccCCC
Confidence 68999998888 3332 22577888877 3588888877643
No 177
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=42.60 E-value=7.5 Score=17.81 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.2
Q ss_pred CCCCCCcchhHHh
Q 031191 18 EVLCPQWQTHFLE 30 (164)
Q Consensus 18 ~~~Cp~C~~~~le 30 (164)
.+.|+.|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 4789999998843
No 178
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.93 E-value=22 Score=20.86 Aligned_cols=39 Identities=28% Similarity=0.554 Sum_probs=25.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-+.+.. +.+ .--+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCCCC
Confidence 578888888763 222 224677887773 577887777554
No 179
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.00 E-value=20 Score=21.69 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=26.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|.-|-+.+.. + .+.--+..||..|. .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 16 PMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 689999998875 2 23335788998873 4777877664
No 180
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.92 E-value=29 Score=21.59 Aligned_cols=40 Identities=23% Similarity=0.619 Sum_probs=26.1
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-+.+..++.+ ..-+..||..|. .|-.|...|...
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 5788888888765543 335677887773 466776666543
No 181
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=34.40 E-value=9 Score=18.79 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 10 k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 10 KPFQCPDCDRSFS 22 (37)
T ss_dssp SSBCCTTTCCCBS
T ss_pred CCccCCCCCcccC
Confidence 3588999998874
No 182
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.38 E-value=3.6 Score=25.90 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=12.7
Q ss_pred CCCCccchhhHHHH
Q 031191 118 PCNHLYHSECILPC 131 (164)
Q Consensus 118 pC~H~Fh~~CI~~W 131 (164)
.|++.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999999888
No 183
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=34.00 E-value=14 Score=22.48 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=26.1
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|..|-+.+..++.+. .-+..||..|. .|-.|+..+...
T Consensus 8 ~~C~~C~~~I~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--CDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--ETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEE--eCCcccccccC--------ccCCCCCCCCCC
Confidence 57888888887655432 25677887662 377777766443
No 184
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=33.63 E-value=9.7 Score=18.43 Aligned_cols=12 Identities=25% Similarity=0.838 Sum_probs=9.4
Q ss_pred CCCCCCcchhHH
Q 031191 18 EVLCPQWQTHFL 29 (164)
Q Consensus 18 ~~~Cp~C~~~~l 29 (164)
.+.|++|+..|.
T Consensus 2 p~~C~~C~k~F~ 13 (33)
T 1rim_A 2 KFACPECPKRFM 13 (33)
T ss_dssp CCCCSSSCCCCS
T ss_pred cccCCCCCchhC
Confidence 468999998873
No 185
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.33 E-value=9.8 Score=21.74 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=10.5
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
-++.||.|+..|
T Consensus 11 ~~~~CPrCn~~f 22 (49)
T 2e72_A 11 GRKICPRCNAQF 22 (49)
T ss_dssp SCCCCTTTCCCC
T ss_pred CceeCCcccccc
Confidence 578999999988
No 186
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.96 E-value=5.7 Score=24.38 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=13.5
Q ss_pred HHhcCCCCCcccCccCCCC
Q 031191 130 PCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 130 ~Wl~~~~~CP~CR~~v~~~ 148 (164)
.||..--.||+|+.++.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 4555667899999887543
No 187
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.86 E-value=33 Score=19.92 Aligned_cols=37 Identities=19% Similarity=0.577 Sum_probs=24.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|.-|-+.+.. +.+ ..-+..||..|. .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGI--TYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCE--EETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceE--EECccccccCcC--------EECCCCCCCC
Confidence 578888888764 322 224677887773 4778877775
No 188
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=32.66 E-value=9.2 Score=17.50 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=8.6
Q ss_pred CCCCCCcchhH
Q 031191 18 EVLCPQWQTHF 28 (164)
Q Consensus 18 ~~~Cp~C~~~~ 28 (164)
.+.|+.|+..|
T Consensus 2 ~~~C~~C~k~f 12 (30)
T 1paa_A 2 AYACGLCNRAF 12 (30)
T ss_dssp CSBCTTTCCBC
T ss_pred CcCCcccCccc
Confidence 46799998877
No 189
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.33 E-value=29 Score=21.01 Aligned_cols=39 Identities=23% Similarity=0.570 Sum_probs=25.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-..+.. +.+ .--+..||..| ..|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVV--SALGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCCS-CCE--EETTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEecc-ceE--EECCceeCccC--------CccccCCCCCCCC
Confidence 579999888873 322 22577888877 3477777766543
No 190
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.88 E-value=6.7 Score=17.81 Aligned_cols=12 Identities=17% Similarity=0.287 Sum_probs=9.1
Q ss_pred CCCCCCcchhHH
Q 031191 18 EVLCPQWQTHFL 29 (164)
Q Consensus 18 ~~~Cp~C~~~~l 29 (164)
.+.|+.|+..|-
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 467999988773
No 191
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.81 E-value=6.6 Score=17.76 Aligned_cols=12 Identities=8% Similarity=0.063 Sum_probs=9.1
Q ss_pred CCCCCCcchhHH
Q 031191 18 EVLCPQWQTHFL 29 (164)
Q Consensus 18 ~~~Cp~C~~~~l 29 (164)
.+.|+.|+..|.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 467999988773
No 192
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=31.60 E-value=3.6 Score=25.02 Aligned_cols=44 Identities=27% Similarity=0.501 Sum_probs=26.2
Q ss_pred cccccccccccCCCccEEe--CCCCccchhhHHHHh--------cCCCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQL--PCNHLYHSECILPCL--------SHQSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~Wl--------~~~~~CP~CR~ 143 (164)
..| ||-.....|..+.-= .|..=||..|+.--- ..+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 356 787665555433222 288889999984211 11346999974
No 193
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.41 E-value=11 Score=18.32 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 8 ~~~~C~~C~k~f~ 20 (36)
T 2elr_A 8 KTHLCDMCGKKFK 20 (36)
T ss_dssp SSCBCTTTCCBCS
T ss_pred CCeecCcCCCCcC
Confidence 4588999998873
No 194
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=31.28 E-value=2.1 Score=23.54 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=11.8
Q ss_pred hhHHHHhcCCCCCc
Q 031191 126 ECILPCLSHQSSCP 139 (164)
Q Consensus 126 ~CI~~Wl~~~~~CP 139 (164)
.||..|++++.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (43)
T 2roo_A 19 NCVYAWYNQQSSCE 32 (43)
T ss_dssp EEEECGGGSSEEEE
T ss_pred HHHHHHHccCCchh
Confidence 68999999988873
No 195
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=31.23 E-value=17 Score=23.11 Aligned_cols=32 Identities=19% Similarity=0.561 Sum_probs=20.8
Q ss_pred ccccccccccccCCCccEEe--CCCCccchhhHHH
Q 031191 98 QESCAICKDEFSLHSEAKQL--PCNHLYHSECILP 130 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~l--pC~H~Fh~~CI~~ 130 (164)
...|.||-+. ..|..+.-- .|.-.||..|..+
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 4689999653 112223222 2889999999876
No 196
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.03 E-value=41 Score=20.26 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=26.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|..|-..+..++.++. .=+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE-eCCccccccC--------CeecCCCCccCC
Confidence 578899888874333322 1467888877 347788877753
No 197
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=30.72 E-value=6.5 Score=17.93 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.4
Q ss_pred CCCCCCcchhH
Q 031191 18 EVLCPQWQTHF 28 (164)
Q Consensus 18 ~~~Cp~C~~~~ 28 (164)
.+.|+.|+..|
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 1rik_A 2 KFACPECPKRF 12 (29)
T ss_dssp CEECSSSSCEE
T ss_pred CccCCCCCchh
Confidence 35688998877
No 198
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.43 E-value=43 Score=19.87 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=28.3
Q ss_pred cccccccccccC---CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSL---HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~---~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|+-|-..+.. +...+ ..=+..||..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AYEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeE-EECcceeCccc--------CEehhcCCCCCCC
Confidence 579999998885 22332 22477899877 3588898887643
No 199
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.26 E-value=42 Score=19.93 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=21.4
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|.-|-..+.. .. +.--+..||.+| ..|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~-~~--v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV--LEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC--BCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-ee--EEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 467777776654 21 222466777766 34666666654
No 200
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=30.21 E-value=6.7 Score=24.87 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=17.1
Q ss_pred ccEEeC-CCCccchhhHHHHhcCC
Q 031191 113 EAKQLP-CNHLYHSECILPCLSHQ 135 (164)
Q Consensus 113 ~~~~lp-C~H~Fh~~CI~~Wl~~~ 135 (164)
..+.-| |++.||..|-..|=++|
T Consensus 42 ~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 42 LEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp SCEECTTTCCEECSSSCSBCCTTT
T ss_pred CceEeCCCCCccccccCCchhhcC
Confidence 345666 99999999988884333
No 201
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.11 E-value=16 Score=20.57 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=10.4
Q ss_pred CCCCCCCCCcchh
Q 031191 15 PLQEVLCPQWQTH 27 (164)
Q Consensus 15 ~~~~~~Cp~C~~~ 27 (164)
.+.+..||+|+..
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 4667799999976
No 202
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=29.91 E-value=2.2 Score=23.31 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=11.7
Q ss_pred hhHHHHhcCCCCCc
Q 031191 126 ECILPCLSHQSSCP 139 (164)
Q Consensus 126 ~CI~~Wl~~~~~CP 139 (164)
.||..|++++.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (42)
T 1qdp_A 19 KCIYAWYNQQGSCQ 32 (42)
T ss_dssp EEECCSSCSCCEEE
T ss_pred HHHHHHHccCCchH
Confidence 68999999888873
No 203
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.79 E-value=32 Score=20.79 Aligned_cols=38 Identities=26% Similarity=0.525 Sum_probs=25.8
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|.-|-..+.+ . .+.--+..||..| ..|..|+..|..
T Consensus 16 ~~C~~C~~~I~~-~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 16 EKCATCSQPILD-R--ILRAMGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CBCTTTCCBCCS-C--CEEETTEEECTTT--------CBCSSSCCBCTT
T ss_pred CccccCCCeecc-e--eEEECCccccHHh--------cCcccCCCccCC
Confidence 578888888873 2 2222567888777 358888887753
No 204
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.74 E-value=5.7 Score=23.37 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=13.3
Q ss_pred HHHhcCCCCCcccCccCCC
Q 031191 129 LPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 129 ~~Wl~~~~~CP~CR~~v~~ 147 (164)
+.||..--.||+|+.++.-
T Consensus 4 d~~lL~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 4 EAGLLEILACPACHAPLEE 22 (56)
T ss_dssp CCSCTTSCCCSSSCSCEEE
T ss_pred CHHHHhheeCCCCCCccee
Confidence 3455566689999997643
No 205
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.73 E-value=36 Score=20.48 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=25.2
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|..|-+.+. +..+ ..-+..||..| ..|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~~--~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--EECCceecccc--------CCccCCCCccCC
Confidence 47888888877 3222 22467888776 347888877753
No 206
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.57 E-value=5.8 Score=24.35 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=12.7
Q ss_pred HHhcCCCCCcccCccCCCC
Q 031191 130 PCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 130 ~Wl~~~~~CP~CR~~v~~~ 148 (164)
.||..--.||+|+.++.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFD 21 (68)
T ss_dssp CCCEEECBCTTTCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 3454556799999887543
No 207
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.20 E-value=24 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.546 Sum_probs=12.1
Q ss_pred Hhc-CCCCCcccCccCCCCC
Q 031191 131 CLS-HQSSCPLCRFQLPMIN 149 (164)
Q Consensus 131 Wl~-~~~~CP~CR~~v~~~~ 149 (164)
|+. ....||.|+..|...+
T Consensus 1 wi~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCC
T ss_pred CccccceECcCCCCeeEeCC
Confidence 442 3467888888775543
No 208
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.03 E-value=62 Score=20.21 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=27.5
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|..|...+..+.. ...=+..||..|-.+ .....|..|.+.|.+
T Consensus 34 F~C~~C~~~L~~~~~--~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 34 FRCAKCLHPLANETF--VAKDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp CCCSSSCCCTTSSCC--EEETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CcccccCCCCCcCee--ECcCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 667777777743221 122456677776533 345679999888864
No 209
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.26 E-value=19 Score=23.73 Aligned_cols=42 Identities=17% Similarity=0.395 Sum_probs=25.0
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
+..|++|..++.-..... +|..|=.. ++....||-|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~g~~~-------hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHA-------RCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEETTEE-------EETTTCCE-EEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceecCCEE-------ECccccch-hhccccCcchhhHHHH
Confidence 368999998876432222 23333221 3456679999887743
No 210
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.24 E-value=49 Score=19.75 Aligned_cols=37 Identities=24% Similarity=0.534 Sum_probs=24.9
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
..|.-|-+.+... .+..=+..||..| ..|-.|++.|.
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhh--------CCcccCCCcCC
Confidence 5788888887652 2333577888777 34778877774
No 211
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.71 E-value=6 Score=18.05 Aligned_cols=12 Identities=17% Similarity=0.287 Sum_probs=9.0
Q ss_pred CCCCCCcchhHH
Q 031191 18 EVLCPQWQTHFL 29 (164)
Q Consensus 18 ~~~Cp~C~~~~l 29 (164)
.+.|+.|+..|.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 467899988773
No 212
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.57 E-value=6.4 Score=24.29 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=13.1
Q ss_pred HHhcCCCCCcccCccCCCC
Q 031191 130 PCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 130 ~Wl~~~~~CP~CR~~v~~~ 148 (164)
.||..--.||+|+.++.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEE
T ss_pred hHHhhheECCCCCCcCEEe
Confidence 3555566899999877543
No 213
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=27.25 E-value=28 Score=23.37 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=28.5
Q ss_pred ccccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 98 QESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
...|.-|-..+.....+ .--+..||..| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v--~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLL--YAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEE--EETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEE--EeCCcEEcccc--------cCcCcCCCccc
Confidence 37899999998864322 22578899887 45888988875
No 214
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.87 E-value=9 Score=17.36 Aligned_cols=11 Identities=18% Similarity=0.319 Sum_probs=8.5
Q ss_pred CCCCCCcchhH
Q 031191 18 EVLCPQWQTHF 28 (164)
Q Consensus 18 ~~~Cp~C~~~~ 28 (164)
.+.|+.|+..|
T Consensus 3 ~~~C~~C~~~f 13 (30)
T 2m0d_A 3 PYQCDYCGRSF 13 (30)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCccc
Confidence 46788898877
No 215
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.57 E-value=9.5 Score=18.29 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=10.1
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 2elx_A 6 SGYVCALCLKKFV 18 (35)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCCCcchhC
Confidence 3578999998874
No 216
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.38 E-value=45 Score=23.83 Aligned_cols=38 Identities=24% Similarity=0.648 Sum_probs=24.0
Q ss_pred ccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCC
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLP 146 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~ 146 (164)
.|..|-..+...+.++. --++.||..| ..|-.|++.+.
T Consensus 71 ~C~~C~~~I~~~e~~i~-a~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-AQGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE-ETTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE-cCCCEEeCCC--------CeECCCCCCCC
Confidence 58888888776443322 2577888877 34666666553
No 217
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.09 E-value=48 Score=19.09 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=27.8
Q ss_pred cccccccccccCCCccEEeCCCCccc--hhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYH--SECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh--~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-+.+..++..+. --+..|| ..| ..|-.|+..+...
T Consensus 3 ~~C~~C~~~I~~~~~~v~-a~~~~wH~~~~C--------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT-YNNFSWHASTEC--------FLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEE-ETTEEEETTTTT--------SBCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEE-ECCCccCCCCCC--------EECCCCCCcCCCC
Confidence 368888888886433322 2478899 877 3588888877543
No 218
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.76 E-value=42 Score=20.06 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=26.2
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|.-|-..+.+ +.+ .--+..||..| ..|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--SAMDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SCE--EETTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CccccCCCeecc-eeE--EECCCeEecCc--------CChhhCCCCCCCC
Confidence 578888888875 222 22467788776 3578888877553
No 219
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=25.70 E-value=64 Score=19.21 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=29.1
Q ss_pred ccccccccccccCCCccEEeC-CCCccchh-hHHHH
Q 031191 98 QESCAICKDEFSLHSEAKQLP-CNHLYHSE-CILPC 131 (164)
Q Consensus 98 ~~~C~ICl~~~~~~~~~~~lp-C~H~Fh~~-CI~~W 131 (164)
...|.-|-..+..|+....-. .-|.||.. ||...
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 368999999999999988877 88999976 88775
No 220
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=25.66 E-value=18 Score=24.07 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.7
Q ss_pred eeecCCCCCCCCCcchh
Q 031191 11 VTTLPLQEVLCPQWQTH 27 (164)
Q Consensus 11 ~~~~~~~~~~Cp~C~~~ 27 (164)
|+=..|+.+.||+|++.
T Consensus 64 V~CPvLR~Y~CpiCGAT 80 (106)
T 3alr_A 64 VMCPYLRQYKCPLCGAT 80 (106)
T ss_dssp BCCTTGGGCCCTTTCCC
T ss_pred CcCCCcccccCCCCCCc
Confidence 55677899999999864
No 221
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.38 E-value=9.1 Score=17.23 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=8.1
Q ss_pred CCCCCCcchhH
Q 031191 18 EVLCPQWQTHF 28 (164)
Q Consensus 18 ~~~Cp~C~~~~ 28 (164)
.+.|+.|+..|
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2m0f_A 2 PLKCRECGKQF 12 (29)
T ss_dssp CEECTTTSCEE
T ss_pred CccCCCCCCcc
Confidence 35688888776
No 222
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.94 E-value=37 Score=24.32 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=24.7
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|..|-..+..++.+.. =+..||..| ..|-.|+..|..
T Consensus 116 ~~C~~C~~~I~~~~~v~a--~~~~~H~~C--------F~C~~C~~~L~~ 154 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG--AGKSWHKSC--------FRCAKCGKSLES 154 (192)
T ss_dssp EECTTTSCEECSSSCEEE--TTEEECTTT--------CBCTTTCCBCCS
T ss_pred CcCCCCCCEecCcEEEec--CCCccchhc--------CCccccCCCCCC
Confidence 568888888776555432 356777766 346677666643
No 223
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.79 E-value=22 Score=20.66 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=11.0
Q ss_pred CCCCCCCCCcchhH
Q 031191 15 PLQEVLCPQWQTHF 28 (164)
Q Consensus 15 ~~~~~~Cp~C~~~~ 28 (164)
.+....||+|+.+-
T Consensus 33 lP~dw~CP~Cg~~K 46 (54)
T 4rxn_A 33 IPDDWVCPLCGVGK 46 (54)
T ss_dssp SCTTCBCTTTCCBG
T ss_pred CCCCCcCcCCCCcH
Confidence 46778999999863
No 224
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.67 E-value=18 Score=18.27 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|++|+..|.
T Consensus 10 k~~~C~~C~k~f~ 22 (42)
T 2eos_A 10 KPYPCEICGTRFR 22 (42)
T ss_dssp CCBCCSSSCCCBS
T ss_pred CCEECCCCCCccC
Confidence 4588999998873
No 225
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.46 E-value=62 Score=21.30 Aligned_cols=49 Identities=4% Similarity=0.003 Sum_probs=33.5
Q ss_pred cccccccccccC-CCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCCC
Q 031191 99 ESCAICKDEFSL-HSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPMI 148 (164)
Q Consensus 99 ~~C~ICl~~~~~-~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~~ 148 (164)
..|..|-..+.+ +..- ...=+..||..|-.+-+..+..|-.|...|...
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 678888888763 2222 223567788888888666555899998888653
No 226
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.21 E-value=44 Score=23.39 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=7.0
Q ss_pred CCCCCCcchhHH
Q 031191 18 EVLCPQWQTHFL 29 (164)
Q Consensus 18 ~~~Cp~C~~~~l 29 (164)
...|..|+..+.
T Consensus 6 ~~~C~~C~~~I~ 17 (169)
T 2rgt_A 6 IPMCAGCDQHIL 17 (169)
T ss_dssp -CBBSSSSSBCC
T ss_pred CCccccCCCccC
Confidence 356777776654
No 227
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.04 E-value=19 Score=18.07 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 10 k~~~C~~C~k~f~ 22 (42)
T 2ytb_A 10 KPYRCDQCGKAFS 22 (42)
T ss_dssp CSBCCTTTTCCBS
T ss_pred CCeeCCCccchhC
Confidence 4588999998873
No 228
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.98 E-value=10 Score=18.53 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=10.2
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elo_A 8 RSYSCPVCEKSFS 20 (37)
T ss_dssp CCCEETTTTEECS
T ss_pred CCcCCCCCCCccC
Confidence 3578999998873
No 229
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.72 E-value=14 Score=21.99 Aligned_cols=42 Identities=21% Similarity=0.516 Sum_probs=23.9
Q ss_pred cccccccccccCCCccEEe-C--CC-CccchhhHHHHh--cCCCCCcccCc
Q 031191 99 ESCAICKDEFSLHSEAKQL-P--CN-HLYHSECILPCL--SHQSSCPLCRF 143 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~l-p--C~-H~Fh~~CI~~Wl--~~~~~CP~CR~ 143 (164)
.-| ||.... .|+ .+.- . |. .-||..|+.--- ..+-.||.|+.
T Consensus 12 ~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred cEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 456 898753 332 2222 2 44 789999997211 12346888864
No 230
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.48 E-value=64 Score=21.26 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=11.5
Q ss_pred ccccccccccCCCccEEeCCCCccchhh
Q 031191 100 SCAICKDEFSLHSEAKQLPCNHLYHSEC 127 (164)
Q Consensus 100 ~C~ICl~~~~~~~~~~~lpC~H~Fh~~C 127 (164)
.|..|-..+...+.++. .-+..||..|
T Consensus 68 ~C~~C~~~I~~~e~~~~-a~~~~~H~~C 94 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMR-VKDKVYHLEC 94 (131)
T ss_dssp ECTTTCCEECTTSEEEE-ETTEEEEGGG
T ss_pred ChhhcCCccCccceeEe-eCCceECccC
Confidence 45555555443332211 1345555544
No 231
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.46 E-value=51 Score=19.62 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=23.7
Q ss_pred ccccccccc-cccCCCccEEeCCCCccchhhHHHHh
Q 031191 98 QESCAICKD-EFSLHSEAKQLPCNHLYHSECILPCL 132 (164)
Q Consensus 98 ~~~C~ICl~-~~~~~~~~~~lpC~H~Fh~~CI~~Wl 132 (164)
...|.||+. .|.+|-.-.-.-|.-.||..|-..|-
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEE
T ss_pred cchhhhhccceeccCCCccccccCCeeecccCCEee
Confidence 479999995 45555444444488888888866654
No 232
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.33 E-value=21 Score=18.46 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=10.1
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2yti_A 11 KPYKCNECGKVF 22 (46)
T ss_dssp CTTCCSSSCCCC
T ss_pred cCeECCCCCccc
Confidence 458999999887
No 233
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.28 E-value=20 Score=18.15 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 11 k~~~C~~C~k~f~ 23 (44)
T 2en7_A 11 KPYVCNECGKAFR 23 (44)
T ss_dssp SSSCCTTTCCCCS
T ss_pred cCeECCCCCCccC
Confidence 4588999998873
No 234
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.96 E-value=12 Score=18.31 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=10.2
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elp_A 8 RAMKCPYCDFYFM 20 (37)
T ss_dssp CCEECSSSSCEEC
T ss_pred CCeECCCCChhhc
Confidence 3578999998874
No 235
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.92 E-value=12 Score=18.02 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=10.0
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 1srk_A 6 RPFVCRICLSAFT 18 (35)
T ss_dssp SCEECSSSCCEES
T ss_pred cCeeCCCCCcccC
Confidence 3578999998873
No 236
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.54 E-value=12 Score=18.12 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=10.1
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2els_A 8 KIFTCEYCNKVFK 20 (36)
T ss_dssp CCEECTTTCCEES
T ss_pred CCEECCCCCceeC
Confidence 4578999998873
No 237
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.40 E-value=22 Score=18.18 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|++|+..|.
T Consensus 11 ~~~~C~~C~k~f~ 23 (44)
T 2eou_A 11 TTSECQECGKIFR 23 (44)
T ss_dssp CCCCCTTTCCCCS
T ss_pred cCeECCCCCcccC
Confidence 4588999998873
No 238
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.38 E-value=20 Score=18.54 Aligned_cols=12 Identities=17% Similarity=0.550 Sum_probs=10.0
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2emg_A 11 NPFICSECGKVF 22 (46)
T ss_dssp CSCBCTTTCCBC
T ss_pred CCEECCccCccc
Confidence 458899999887
No 239
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=22.30 E-value=16 Score=24.03 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHhcCCCCCcccCccCCC
Q 031191 129 LPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 129 ~~Wl~~~~~CP~CR~~v~~ 147 (164)
+.||-.--.||+|+.++.-
T Consensus 2 d~~LLdILaCP~cK~pL~l 20 (97)
T 2k5r_A 2 DRKLLHLLCSPDTRQPLSL 20 (97)
T ss_dssp CTTTCSSCCCCTTSSCCEE
T ss_pred ChHHhhheECCCCCCcccc
Confidence 3466666789999998754
No 240
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.21 E-value=23 Score=18.34 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|++|+..|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2eoh_A 11 KPYECKECRKTFI 23 (46)
T ss_dssp CSCCCSSSCCCCS
T ss_pred CCcCCCCcCchhC
Confidence 4588999998873
No 241
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.16 E-value=12 Score=18.09 Aligned_cols=13 Identities=23% Similarity=0.311 Sum_probs=10.0
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elt_A 8 KPYKCPQCSYASA 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCCCCCCCCcccC
Confidence 3578999998873
No 242
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.16 E-value=5.7 Score=19.07 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=8.1
Q ss_pred ccchhhHHHHh
Q 031191 122 LYHSECILPCL 132 (164)
Q Consensus 122 ~Fh~~CI~~Wl 132 (164)
.||..|-+.||
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 47777877776
No 243
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.12 E-value=20 Score=17.95 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=10.2
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 9 k~~~C~~C~k~f~ 21 (42)
T 2yte_A 9 KPYSCAECKETFS 21 (42)
T ss_dssp CSCBCTTTCCBCS
T ss_pred CCeECCCCCCccC
Confidence 4588999998873
No 244
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.10 E-value=13 Score=18.05 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=10.0
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elv_A 8 LLYDCHICERKFK 20 (36)
T ss_dssp CCEECSSSCCEES
T ss_pred CCeECCCCCCccC
Confidence 3578999998773
No 245
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.97 E-value=20 Score=18.57 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|++|+..|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2eon_A 11 KPYKCQVCGKAFR 23 (46)
T ss_dssp CSCBCSSSCCBCS
T ss_pred cccCCCCCCcccC
Confidence 4688999998873
No 246
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.94 E-value=23 Score=18.22 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=10.0
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eq2_A 11 KPYQCNECGKAF 22 (46)
T ss_dssp CSSSCCSSCCCC
T ss_pred CCeECCCCCccc
Confidence 458899999887
No 247
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.90 E-value=21 Score=18.46 Aligned_cols=13 Identities=15% Similarity=0.306 Sum_probs=10.4
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2enf_A 11 KPYKCNECGKVFT 23 (46)
T ss_dssp CSCBCSSSCCBCS
T ss_pred cCeECCCCCcccC
Confidence 4588999998873
No 248
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=21.85 E-value=11 Score=19.63 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=10.9
Q ss_pred CCCCCCCcchhHHh
Q 031191 17 QEVLCPQWQTHFLE 30 (164)
Q Consensus 17 ~~~~Cp~C~~~~le 30 (164)
..+.|++|+..|..
T Consensus 7 kp~~C~~CgK~F~~ 20 (36)
T 1fv5_A 7 ARFMCLPCGIAFSS 20 (36)
T ss_dssp CCCEETTTTEECSC
T ss_pred cCeECCCCCCccCC
Confidence 46789999998843
No 249
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.48 E-value=23 Score=18.23 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=9.9
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2eq1_A 11 KPYKCNECGKAF 22 (46)
T ss_dssp CCCCCTTTTCCC
T ss_pred CCeECCcCChhh
Confidence 458899999877
No 250
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.24 E-value=14 Score=17.92 Aligned_cols=13 Identities=8% Similarity=0.076 Sum_probs=10.2
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elq_A 8 KPFKCSLCEYATR 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCccCCCCCchhC
Confidence 3578999998873
No 251
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=21.22 E-value=33 Score=19.68 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=10.2
Q ss_pred CCCCCCCCCcchh
Q 031191 15 PLQEVLCPQWQTH 27 (164)
Q Consensus 15 ~~~~~~Cp~C~~~ 27 (164)
.+....||+|+..
T Consensus 33 lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 33 LPDDWACPVCGAS 45 (52)
T ss_dssp SCTTCCCSSSCCC
T ss_pred CCCCCcCCCCCCc
Confidence 3667799999874
No 252
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.96 E-value=25 Score=18.16 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=10.3
Q ss_pred CCCCCCCcchhHH
Q 031191 17 QEVLCPQWQTHFL 29 (164)
Q Consensus 17 ~~~~Cp~C~~~~l 29 (164)
..+.|+.|+..|.
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2emz_A 11 RPFKCNECGKGFG 23 (46)
T ss_dssp CSCCCSSSCCCCS
T ss_pred CCeECCCCCcccC
Confidence 4589999998773
No 253
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.84 E-value=22 Score=18.42 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=10.0
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|++|+..|
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2enh_A 11 KPYECDVCRKAF 22 (46)
T ss_dssp SSCBCTTTCCBC
T ss_pred CCcCCCCcCchh
Confidence 458899999887
No 254
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.80 E-value=24 Score=18.26 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=10.0
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2yth_A 11 KPFQCEECGKRF 22 (46)
T ss_dssp SSBCCSSSCCCB
T ss_pred cCCCCCCCCccc
Confidence 458999999887
No 255
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.70 E-value=25 Score=18.22 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=10.0
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~F 22 (46)
T 2eom_A 11 RGHRCSDCGKFF 22 (46)
T ss_dssp SSCCCSSSCCCC
T ss_pred CCcCCCCCCCee
Confidence 458899999887
No 256
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=26 Score=17.94 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.0
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ep1_A 11 KPYECSDCGKSF 22 (46)
T ss_dssp CSSCCSSSCCCC
T ss_pred CCcCCCCCCchh
Confidence 458899999887
No 257
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=20.36 E-value=26 Score=22.99 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=18.6
Q ss_pred CCCCCcchhHHhhhcCCCCCCCCh
Q 031191 19 VLCPQWQTHFLEHMESINPDSPNQ 42 (164)
Q Consensus 19 ~~Cp~C~~~~le~~~~~~p~~~~~ 42 (164)
+-|+.|+.+|.+.+...++.-.+.
T Consensus 45 lPC~~C~~hf~~~l~~~p~~~~sr 68 (106)
T 4e0h_A 45 YPCNWCAKDFEKYIRENAPQVESR 68 (106)
T ss_dssp CSSHHHHHHHHHHHHHSCCCCSSH
T ss_pred CChHHHHHHHHHHHHHCCCccCCH
Confidence 459999999999998776654444
No 258
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=26 Score=17.99 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=9.9
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 k~~~C~~C~k~f 22 (46)
T 2ytr_A 11 KPYKCNECGKAF 22 (46)
T ss_dssp CTTCCTTTCCCC
T ss_pred cCcCCCCCCCcc
Confidence 458899999887
No 259
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=20.24 E-value=55 Score=23.19 Aligned_cols=44 Identities=14% Similarity=0.390 Sum_probs=26.0
Q ss_pred cccccccccccCCCccEEeCCCCccchhhHHHHhcCCCCCcccCccCCC
Q 031191 99 ESCAICKDEFSLHSEAKQLPCNHLYHSECILPCLSHQSSCPLCRFQLPM 147 (164)
Q Consensus 99 ~~C~ICl~~~~~~~~~~~lpC~H~Fh~~CI~~Wl~~~~~CP~CR~~v~~ 147 (164)
..|..|...+.... . ..=+..||..|-.+ .....|..|...|..
T Consensus 88 F~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~--~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 88 LKCSDCHVPLAERC--F-SRGESVYCKDDFFK--RFGTKCAACQLGIPP 131 (182)
T ss_dssp TSCTTTCCCCSSCC--E-EETTEEECHHHHHH--TTSCCCTTTCCCCCS
T ss_pred CccCCCCCccCCCc--e-eECCEeeecCcccc--ccccccccCCCccCC
Confidence 67777777776532 1 12355666666544 234567777776654
No 260
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.19 E-value=31 Score=19.75 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.5
Q ss_pred CCCCCCCCCcchh
Q 031191 15 PLQEVLCPQWQTH 27 (164)
Q Consensus 15 ~~~~~~Cp~C~~~ 27 (164)
.+....||+|+..
T Consensus 32 lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 32 LPDDWVCPLCGAP 44 (52)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 4677899999975
No 261
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.09 E-value=24 Score=18.14 Aligned_cols=12 Identities=17% Similarity=0.431 Sum_probs=9.9
Q ss_pred CCCCCCCcchhH
Q 031191 17 QEVLCPQWQTHF 28 (164)
Q Consensus 17 ~~~~Cp~C~~~~ 28 (164)
..+.|+.|+..|
T Consensus 11 ~~~~C~~C~k~f 22 (46)
T 2eov_A 11 KPYKCSDCGKSF 22 (46)
T ss_dssp CSCBCSSSCCBC
T ss_pred CCccCCccChhh
Confidence 458899999887
Done!