BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031193
         (164 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q03271|PO13_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
           element R1 3 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
          Length = 383

 Score = 33.9 bits (76), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 37  FRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPIH--QDVRILSKKIPVTKFLNL 94
           +R G N+      V++ +   ++   S N   + ++   +   D RI  + +   ++L +
Sbjct: 32  YRYGTNI---GVEVSDSKTVCMMLKGSLNMLNRVVHVSTNGMDDKRI--RCVDRVRYLGV 86

Query: 95  QVGIGHNFQLHATGWKWKLTTCLVEME 121
            VGIG +F +H  G K +LTT ++ + 
Sbjct: 87  NVGIGMDFSVHIDGMKRRLTTAIMRLR 113


>sp|Q6CE38|CLU_YARLI Clustered mitochondria protein homolog OS=Yarrowia lipolytica
          (strain CLIB 122 / E 150) GN=CLU1 PE=3 SV=1
          Length = 1181

 Score = 32.3 bits (72), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 33 EIEGFRVGVNLEFYNAPVNEYQAKI 57
          EIEG   G  +E  NAP NE++A++
Sbjct: 72 EIEGLESGATIELTNAPYNEHEARL 96


>sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3
           GN=IIV3-059L PE=3 SV=1
          Length = 560

 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 17  YSINLMPSELF-LKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPI 75
           +S +L+P  L  L  +K ++G  + + ++ Y+  +NE++A  IL PL  N+  K   + I
Sbjct: 477 HSSDLLPDPLNKLLVQKLVDGHPIEIKMD-YDGKLNEWEAIPILPPLDYNKILKMYNDHI 535

Query: 76  HQ 77
           HQ
Sbjct: 536 HQ 537


>sp|Q9H6R7|CB044_HUMAN WD repeat-containing protein C2orf44 OS=Homo sapiens GN=C2orf44
           PE=1 SV=1
          Length = 721

 Score = 30.8 bits (68), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 10  PTSWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPN 65
           P+S  + Y+I+L+  E+ L+    I           ++AP+N+   K +++ LSP+
Sbjct: 415 PSSKSDQYAISLIVREIMLEEEPSITSGESQTTYSTFSAPLNKANRKKLIESLSPD 470


>sp|Q91WG3|TRUB2_MOUSE Probable tRNA pseudouridine synthase 2 OS=Mus musculus GN=Trub2
           PE=2 SV=1
          Length = 331

 Score = 29.6 bits (65), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 16  LYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWKFIYEPI 75
           L+++   P   +L  R+ +E  ++   L     P  + + + +L P+  +   K      
Sbjct: 12  LFAVYKPPGLKWLHLRETVE-LQLLKGLNAQQPPAPDQRVRFLLGPVEGSEEKKLTLRAT 70

Query: 76  HQDVRILSKKIPVTKFLNLQVGIGHNFQLHATG 108
           +       + +    F NL++G+GH   + A+G
Sbjct: 71  NVPSLTTHRLVRGPAFTNLKIGVGHRLDVQASG 103


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.143    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,041,439
Number of Sequences: 539616
Number of extensions: 2820407
Number of successful extensions: 6353
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6350
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)