Query 031193
Match_columns 164
No_of_seqs 16 out of 18
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 16:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lv4_A Catestatin, chromograni 36.0 9.6 0.00033 22.7 0.4 11 122-132 16-26 (26)
2 2l66_A SSO7C4, transcriptional 32.7 6.7 0.00023 24.5 -0.7 39 21-69 15-53 (53)
3 3i9v_7 NADH-quinone oxidoreduc 28.0 25 0.00085 27.3 1.7 37 51-90 76-112 (129)
4 1yfb_A Transition state regula 24.6 37 0.0013 22.2 1.8 43 12-65 17-59 (59)
5 2e7m_A Protein KIAA0319; PKD d 19.8 1.3E+02 0.0043 22.5 4.1 70 37-108 16-90 (113)
6 4gh9_A Polymerase cofactor VP3 19.0 48 0.0016 26.2 1.7 47 20-81 95-143 (146)
7 3rws_A MTN13 protein; zeatin, 15.9 89 0.0031 23.5 2.5 32 49-80 99-133 (168)
8 2de0_X Alpha-(1,6)-fucosyltran 15.1 63 0.0022 28.7 1.7 40 105-145 473-515 (526)
9 1ln1_A PC-TP, phosphatidylchol 13.8 1.5E+02 0.0051 21.3 3.2 25 62-88 24-48 (214)
10 2gia_A Mitochondrial RNA-bindi 13.4 20 0.00068 29.2 -1.8 28 105-133 21-53 (195)
No 1
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=36.00 E-value=9.6 Score=22.67 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=5.2
Q ss_pred ccCcccceeee
Q 031193 122 YPGSGIRHLWA 132 (164)
Q Consensus 122 fPG~d~r~gW~ 132 (164)
-||-++|.||+
T Consensus 16 ~Pg~~~rrgw~ 26 (26)
T 1lv4_A 16 GPGPQLXXXXX 26 (26)
T ss_dssp SSCTTC-----
T ss_pred CCccccccccC
Confidence 49999999996
No 2
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=32.66 E-value=6.7 Score=24.52 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=27.6
Q ss_pred ccchhhhhhhheeecceEEEeeeEEecCCCcceeeEEEeecCCCCCCce
Q 031193 21 LMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWK 69 (164)
Q Consensus 21 lmP~El~lKFRkevqG~rvG~NfEf~n~~~nd~~aKlVlKPl~~~~kWK 69 (164)
..|+|++-++ |++-|-.+++.- .+- +++++|......||
T Consensus 15 ~IPk~ir~~l-----gi~~Gd~v~i~~---~~~--~ivl~p~~~~~~~~ 53 (53)
T 2l66_A 15 TIPAKVRQKF-----QIKEGDLVKVTF---DES--EGVVKIQLLKEPWK 53 (53)
T ss_dssp CCCHHHHHHS-----CCCTTCEEEEEE---CSS--SCCEEEEEECCCCC
T ss_pred EeCHHHHHHc-----CcCCCCEEEEEE---ECC--EEEEEECCCCCCCC
Confidence 3587776554 777777788773 221 59999998888886
No 3
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=27.96 E-value=25 Score=27.33 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=30.3
Q ss_pred cceeeEEEeecCCCCCCceEEEeecCCceeEEeeccccee
Q 031193 51 NEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTK 90 (164)
Q Consensus 51 nd~~aKlVlKPl~~~~kWK~iyEP~~~DvrilsKKIPv~~ 90 (164)
++-.-.|.|.+...--.|+..|||-.|=+ +-|||+||
T Consensus 76 ha~lK~islr~~g~h~hwh~h~e~g~Gl~---eGk~p~tk 112 (129)
T 3i9v_7 76 HAKLKRIGLRLPRAHIHLHAHYEPGKGLV---TGKIPLTK 112 (129)
T ss_dssp SSSSCCEEEEETTTTEEEEEEEETTTEEE---ETTEECCH
T ss_pred hhhhcceEEecCCCcceeeeeecCCCccc---cCCCcccH
Confidence 34444578888888999999999998855 99999986
No 4
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=24.61 E-value=37 Score=22.16 Aligned_cols=43 Identities=40% Similarity=0.561 Sum_probs=28.7
Q ss_pred ChhhhhcccccchhhhhhhheeecceEEEeeeEEecCCCcceeeEEEeecCCCC
Q 031193 12 SWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPN 65 (164)
Q Consensus 12 sw~ElY~inlmP~El~lKFRkevqG~rvG~NfEf~n~~~nd~~aKlVlKPl~~~ 65 (164)
..++.++| ..|+|++-++ |++-|-.+++.- .+ -+|+++|..|+
T Consensus 17 kv~~kGqI-tIPkeiR~~L-----gi~~Gd~l~i~~---~~--~~IiL~p~~p~ 59 (59)
T 1yfb_A 17 KVDELGRV-VIPIELRRTL-----GIAEKDALEIYV---DD--EKIILKKYKPN 59 (59)
T ss_dssp ECCTTCEE-ECCHHHHHHT-----TCCTTCEEEEEE---ET--TEEEEEECCCC
T ss_pred EECCCCEE-EeCHHHHHHc-----CCCCCCEEEEEE---EC--CEEEEEECCCC
Confidence 34455555 3688887665 677777788773 22 27999998764
No 5
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=19.79 E-value=1.3e+02 Score=22.55 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=45.2
Q ss_pred eEEEeeeEEecCCCcceeeEEEee--cCC---CCCCceEEEeecCCceeEEeecccceeeeeeeeecceeeeecccc
Q 031193 37 FRVGVNLEFYNAPVNEYQAKIILK--PLS---PNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATG 108 (164)
Q Consensus 37 ~rvG~NfEf~n~~~nd~~aKlVlK--Pl~---~~~kWK~iyEP~~~DvrilsKKIPv~~fLnlQvGIGH~F~~~~tG 108 (164)
+.+|-|.+.. +|.|+..-+-..- |.. ....|++|..|++.+++|-.+--.--+.-+|+.|. +.||+.-|+
T Consensus 16 Vsag~~~~i~-LP~n~v~L~a~v~pd~~~~~~ysyeWtli~gP~d~~~~~~~~~~~tlkLS~L~eG~-Y~FqltVtd 90 (113)
T 2e7m_A 16 VSAGDNLIIT-LPDNEVELKAFVAPAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVGL-YVFKVTVSS 90 (113)
T ss_dssp EECCSCEEEE-TTCCCEEEECEEESCCCSSCCCCCBCCEEECCTTCCCCCCTTSSSEEEECSCCSEE-EEECCEEEE
T ss_pred EEcCCCeEEE-CCCCcEEEEEEECCCCCCCCEEeeEEEEecCCCCCceEEecCCCCeeEecCcCcEE-EEEEEEEEC
Confidence 3456667766 8888876544443 433 46789999999977777655554444556677665 346665554
No 6
>4gh9_A Polymerase cofactor VP35; viral polymerase, interferon inhibition, double stranded VIR viral protein,RNA binding protein; 1.65A {Marburg virus}
Probab=19.03 E-value=48 Score=26.15 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=37.8
Q ss_pred cccchhhhhhhheeecceEEEeeeEEecCCCcceeeEEEeecCCC--CCCceEEEeecCCceeE
Q 031193 20 NLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSP--NRPWKFIYEPIHQDVRI 81 (164)
Q Consensus 20 nlmP~El~lKFRkevqG~rvG~NfEf~n~~~nd~~aKlVlKPl~~--~~kWK~iyEP~~~Dvri 81 (164)
+..|..+++|.|..+ +..||--|---|.+| +|-|.-||+-.++.-+=
T Consensus 95 da~Ppvihirsrgdi---------------PraCQKSLRpvPPsPkIDrGWvcif~~q~gktl~ 143 (146)
T 4gh9_A 95 GVVPPVIRVKNFQTV---------------PRPCQKSLRAVPPNPTIDKGWVCVYSSEQGETRA 143 (146)
T ss_dssp TCCCCEEECSSGGGS---------------CGGGGGGEECCCSSCCGGGTEEEEEECTTSCEEE
T ss_pred cCCCCeEEeeccCCC---------------ChHHHhcCCCCCcCCccccceEEEEEccCCceec
Confidence 467888888888766 578998888888888 89999999988876543
No 7
>3rws_A MTN13 protein; zeatin, cytokinin, hormone, lucerne, nodulin, NODU plant protein; HET: ZEA; 1.85A {Medicago truncatula}
Probab=15.91 E-value=89 Score=23.47 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCcceeeEEEeecCCCC---CCceEEEeecCCcee
Q 031193 49 PVNEYQAKIILKPLSPN---RPWKFIYEPIHQDVR 80 (164)
Q Consensus 49 ~~nd~~aKlVlKPl~~~---~kWK~iyEP~~~Dvr 80 (164)
|...|.+-+.+.|.... -+|...|+|..+|..
T Consensus 99 p~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~d~~ 133 (168)
T 3rws_A 99 PLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDIE 133 (168)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEEECSSSCC
T ss_pred CceEEEEEEEEEECCCCceEEEEEEEEEECCCccC
Confidence 35567888888886543 679999999988653
No 8
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=15.13 E-value=63 Score=28.71 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=26.0
Q ss_pred ccccceeeEeeeecc--ccccCcccceeeee-eecceeccccch
Q 031193 105 HATGWKWKLTTCLVE--MEYPGSGIRHLWAC-VLGWIFDLVGGQ 145 (164)
Q Consensus 105 ~~tGWkWKltt~lG~--~ifPG~d~r~gW~a-~lp~i~g~~Gt~ 145 (164)
...|| |+-++...+ ++||.-=|..--.. ..|+..++..+|
T Consensus 473 ~~~gW-~~G~~~~~g~~G~fPsnyV~~~~~~~~~p~y~~~~~~~ 515 (526)
T 2de0_X 473 HWDGY-SKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAEKAG 515 (526)
T ss_dssp CSSSE-EEEEETTTTEEEEEEGGGEEECCCEECCCCCCC-----
T ss_pred cCCCe-eEEEeCCCCCEEEECchheeEcccCCCCCChhhhhhcC
Confidence 46899 888764444 99999888765555 678888877655
No 9
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=13.85 E-value=1.5e+02 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=18.6
Q ss_pred CCCCCCceEEEeecCCceeEEeecccc
Q 031193 62 LSPNRPWKFIYEPIHQDVRILSKKIPV 88 (164)
Q Consensus 62 l~~~~kWK~iyEP~~~DvrilsKKIPv 88 (164)
......||++.+ ..+++|.+|+.|=
T Consensus 24 ~~~~~~W~~~~~--~~~v~v~~~~~~~ 48 (214)
T 1ln1_A 24 ALAGADWQLLVE--TSGISIYRLLDKK 48 (214)
T ss_dssp CCTTTTCEEEEE--ETTEEEEEEEETT
T ss_pred CCCCCCcEEEEE--CCCeEEEEeccCC
Confidence 334567999998 5679999987653
No 10
>2gia_A Mitochondrial RNA-binding protein 2; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_A 2gje_A
Probab=13.41 E-value=20 Score=29.24 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=17.3
Q ss_pred ccccceeeEeeeecc-----ccccCcccceeeee
Q 031193 105 HATGWKWKLTTCLVE-----MEYPGSGIRHLWAC 133 (164)
Q Consensus 105 ~~tGWkWKltt~lG~-----~ifPG~d~r~gW~a 133 (164)
.+||-||+-.+.-+. .+=|.||| ++||.
T Consensus 21 ratg~~wr~~s~~~~R~RR~~lPPAFDv-VHWnD 53 (195)
T 2gia_A 21 RATGGKWRRPSLAQQRARRAQLPPAFDV-VHWND 53 (195)
T ss_dssp ------CCCHHHHHHHHHHHHSCCEEEE-EECCG
T ss_pred cccCcccccchhhhhcccCCCCCCccce-eeccC
Confidence 688999987666555 88899998 78986
Done!