BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031195
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 102 IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157
I GD ++ + + ++ ++ D LV+GSRGLG +++ +G+VS + + HA CPV +K
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVXTIK 162
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 100 AKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157
A + G E +L+A K D +VMG+RGLG + + LGS S V+ APCPV +V+
Sbjct: 80 ALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 97 NIVAKIYWGDARERLLE-AIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155
N+ +I +G + + + A + ++D +V+G+ G + R+ +GS ++YV+ HAPC V +
Sbjct: 85 NLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIV 144
Query: 156 VK 157
++
Sbjct: 145 IR 146
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 102 IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157
I G E +++ ED +D ++MGS G ++ I+LGSV+ V+ + PV +VK
Sbjct: 103 IVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTE 65
++ VA DFS + AL +A + G L+IIH++ + D++ +L + E
Sbjct: 172 RVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG-DKTADLRVXE---------E 221
Query: 66 FREPETMEKYNVKXXXXXXXXXXXXSRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVM 125
E +E + I G + +L E++ ++
Sbjct: 222 VIGAEGIEVH------------------------VHIESGTPHKAILAKREEINATTIFX 257
Query: 126 GSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157
GSRG G+V ILGS S V+ +P PV + K
Sbjct: 258 GSRGAGSVXTXILGSTSESVIRRSPVPVFVCK 289
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 95 EANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154
+A ++ GD +++A E+ + GSRG ++I+LGSVS V+ + PV
Sbjct: 101 KAEVIKPFPAGDPVVEIIKASENYSF--IAXGSRGASKFKKILLGSVSEGVLHDSKVPVY 158
Query: 155 IVK 157
I K
Sbjct: 159 IFK 161
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 102 IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157
+ WG+ RE ++ E +D +V+GS G + ++LGS +N V+ +A C V V+
Sbjct: 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGL-ALLLGSTANSVLHYAKCDVLAVR 146
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 102 IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157
+ WG+ RE ++ E +D +V+GS G + ++LGS +N V+ +A C V V+
Sbjct: 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGL-ALLLGSTANSVLHYAKCDVLAVR 146
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 117 DLKLDSLVM--GSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158
D+ D+++M G G G +LGSVS+ ++ HA CPV I+ D
Sbjct: 118 DMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHD 161
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 110 RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158
+L++ E+ +L +V+GSRG G +++GSV V A PV + ++
Sbjct: 260 QLVQRSEEAQL--VVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARE 306
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 124 VMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158
V+G G G +LGSVS+ ++ HA CPV I+ D
Sbjct: 115 VVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHD 149
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 110 RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158
+L++ E+ +L +V+GSRG G ++GSV V A PV + ++
Sbjct: 248 QLVQRSEEAQL--VVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVARE 294
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 119 KLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156
+ D +V+G++G + ++LGSV+ V A CPV +V
Sbjct: 110 ECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|1FMZ|A Chain A, Crystal Structure Of A Mutant Winged Bean Chymotrypsin
Inhibitor Protein, N14k
Length = 186
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++KG T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 10 AEGNLVEKGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 57
>pdb|2QUQ|A Chain A, Crystal Structure Of The Essential Inner Kinetochore
Protein Cep3p
Length = 562
Score = 28.1 bits (61), Expect = 2.5, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 17 SKFALSWAVNNLLDKGDTLY--IIHINPNSL-------DESRNLMWAKSGSPLIPLTEFR 67
SK L W LLD GD+ Y + I N + DE +L+ K L+PL + R
Sbjct: 469 SKLKLLWDKVQLLDSGDSFYHPVFKILQNDIKIIELKNDEMFSLI--KGLGSLVPLNKLR 526
Query: 68 EPETMEKYNVKXXXXXXXXXXXXSRQKEANI 98
+ +E+ + Q E NI
Sbjct: 527 QESLLEEEDENNTEPSDFRTIVEEFQSEYNI 557
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 9 VALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLM 52
++ D P + F AV ++L + +Y+++ N+LD +RN++
Sbjct: 363 LSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNII 406
>pdb|2ESU|A Chain A, Crystal Structure Of Asn To Gln Mutant Of Winged Bean
Chymotrypsin Inhibitor Protein
Length = 186
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL+++G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 10 AEGNLVEQGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 57
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 109 ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSFG 162
+ L+ ++ K D LV+G+ GL T+ +LGSV V A V IV G
Sbjct: 109 DALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTEGG 162
>pdb|3I29|B Chain B, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
Length = 187
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 11 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 58
>pdb|3QYD|A Chain A, Crystal Structure Of A Recombinant Chimeric Trypsin
Inhibitor
pdb|3QYD|C Chain C, Crystal Structure Of A Recombinant Chimeric Trypsin
Inhibitor
pdb|3QYD|B Chain B, Crystal Structure Of A Recombinant Chimeric Trypsin
Inhibitor
Length = 181
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 11 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 58
>pdb|3I2X|A Chain A, Crystal Structure Of A Chimeric Trypsin Inhibitor Having
Rea Loop Of Eti On The Scaffold Of Wci
pdb|3I2X|B Chain B, Crystal Structure Of A Chimeric Trypsin Inhibitor Having
Rea Loop Of Eti On The Scaffold Of Wci
Length = 187
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 11 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 58
>pdb|1XG6|A Chain A, The Crystal Structure Of The P1 Mutant (Leu To Arg)of A
Winged Bean Chymotrypsin Inhibitor(Kunitz)solved At
2.15a Resolution
Length = 187
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 11 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 58
>pdb|3I2A|A Chain A, Crystal Structure Of A Chimeric Trypsin Inhibitor
Protein St Wci(S)
pdb|3I2A|B Chain B, Crystal Structure Of A Chimeric Trypsin Inhibitor
Protein St Wci(S)
Length = 187
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 11 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 58
>pdb|2REU|A Chain A, Crystal Structure Of The C-Terminal Of Sau3ai Fragment
Length = 258
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 6 KIGVALDFSPSSKFALSWAV-NNLLDKGDTLYIIHINPNS 44
K GV L+ P W + NN +DK D L I H+ P++
Sbjct: 166 KEGVTLEAVPDKSTKDGWRIKNNFVDKSDDL-ICHVRPHT 204
>pdb|2VEQ|A Chain A, Insights Into Kinetochore-Dna Interactions From The
Structure Of Cep3p
Length = 565
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 17 SKFALSWAVNNLLDKGDTLY--IIHINPNSL-------DESRNLMWAKSGSPLIPLTEFR 67
SK L W LLD GD+ Y + I N + DE +L+ K L+PL + R
Sbjct: 472 SKLKLLWDKVQLLDSGDSFYHPVFKILQNDIKIIELKNDEMFSLI--KGLGSLVPLNKLR 529
Query: 68 EPETMEK 74
+ +E+
Sbjct: 530 QESLLEE 536
>pdb|2QYI|B Chain B, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|D Chain D, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|3VEQ|A Chain A, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 183
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 7 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 54
>pdb|4WBC|A Chain A, 2.13 A Structure Of A Kunitz-Type Winged Bean
Chymotrypsin Inhibitor Protein
pdb|1WBC|A Chain A, Crystallization And Preliminary X-Ray Studies Of
Psophocarpin B1, A Chymotrypsin Inhibitor From Winged
Bean Seeds
pdb|2WBC|A Chain A, Refined Crystal Structure (2.3 Angstrom) Of A Winged
Bean Chymotrypsin Inhibitor And Location Of Its Second
Reactive Site
Length = 183
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 7 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 54
>pdb|1EYL|A Chain A, Structure Of A Recombinant Winged Bean Chymotrypsin
Inhibitor
Length = 186
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 10 AEGNLVENGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 57
>pdb|2ET2|A Chain A, Crystal Structure Of An Asn To Ala Mutant Of Winged Bean
Chymotrypsin Inhibitor Protein
Length = 186
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 10 AEGNLVEAGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 57
>pdb|2BEB|A Chain A, X-Ray Structure Of Asn To Thr Mutant Of Winged Bean
Chymotrypsin Inhibitor
pdb|2BEB|B Chain B, X-Ray Structure Of Asn To Thr Mutant Of Winged Bean
Chymotrypsin Inhibitor
Length = 186
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 10 AEGNLVETGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 57
>pdb|1FN0|A Chain A, Structure Of A Mutant Winged Bean Chymotrypsin Inhibitor
Protein, N14d
Length = 186
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 10 AEGNLVEDGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 57
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
Length = 477
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 98 IVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128
++ IY ++RER+LEA + L+ L G R
Sbjct: 291 VIVPIYKDESRERVLEAAQGLRQALLAQGLR 321
>pdb|2BEA|A Chain A, Crystal Structure Of Asn14 To Gly Mutant Of Wci
pdb|2BEA|B Chain B, Crystal Structure Of Asn14 To Gly Mutant Of Wci
Length = 186
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 AVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74
A NL++ G T Y++ P+ + AK+G+ PLT R P + K
Sbjct: 10 AEGNLVEGGGTYYLL---PHIWAHGGGIETAKTGNEPCPLTVVRSPNEVSK 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,677,676
Number of Sequences: 62578
Number of extensions: 168244
Number of successful extensions: 612
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 53
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)