Query 031195
Match_columns 164
No_of_seqs 109 out of 1008
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15005 universal stress prot 100.0 8.4E-28 1.8E-32 158.1 14.6 142 3-157 1-144 (144)
2 PRK15456 universal stress prot 100.0 1.2E-27 2.6E-32 157.1 14.4 140 3-157 1-142 (142)
3 PRK09982 universal stress prot 100.0 3.4E-27 7.3E-32 154.9 13.2 141 2-160 1-141 (142)
4 cd01989 STK_N The N-terminal d 99.9 1.2E-26 2.7E-31 152.9 14.5 141 6-158 1-145 (146)
5 PRK15118 universal stress glob 99.9 3.4E-26 7.3E-31 150.5 12.6 140 2-160 1-141 (144)
6 PRK10116 universal stress prot 99.9 3.6E-25 7.9E-30 145.2 13.7 140 2-160 1-141 (142)
7 PF00582 Usp: Universal stress 99.9 3.1E-25 6.6E-30 144.1 11.5 140 3-157 1-140 (140)
8 PRK11175 universal stress prot 99.9 9.2E-25 2E-29 160.0 13.8 147 2-160 1-148 (305)
9 cd01988 Na_H_Antiporter_C The 99.9 3.7E-24 8E-29 138.5 13.9 131 6-157 1-132 (132)
10 cd01987 USP_OKCHK USP domain i 99.9 2E-23 4.3E-28 134.0 12.5 123 6-157 1-124 (124)
11 PRK11175 universal stress prot 99.9 3.7E-22 8E-27 146.2 13.7 145 3-162 151-304 (305)
12 cd00293 USP_Like Usp: Universa 99.9 1.1E-20 2.4E-25 121.2 13.2 130 6-156 1-130 (130)
13 COG0589 UspA Universal stress 99.8 1.4E-19 3.1E-24 119.6 14.6 148 2-159 3-153 (154)
14 PRK12652 putative monovalent c 99.7 8.3E-17 1.8E-21 119.1 14.2 132 1-156 2-149 (357)
15 PRK10490 sensor protein KdpD; 99.5 5.4E-13 1.2E-17 110.1 14.4 125 4-159 250-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.5 1.3E-12 2.9E-17 103.4 13.2 127 5-160 249-376 (890)
17 cd01984 AANH_like Adenine nucl 98.7 1.5E-07 3.3E-12 56.2 6.7 84 7-155 1-85 (86)
18 PLN03159 cation/H(+) antiporte 98.2 4E-05 8.7E-10 63.6 13.2 146 5-160 459-617 (832)
19 TIGR02432 lysidine_TilS_N tRNA 97.7 0.0013 2.8E-08 45.0 10.3 94 6-131 1-111 (189)
20 PF01171 ATP_bind_3: PP-loop f 97.6 0.0032 6.8E-08 42.9 11.4 93 6-130 1-107 (182)
21 PLN03159 cation/H(+) antiporte 97.5 0.0021 4.6E-08 53.6 11.8 149 4-159 630-795 (832)
22 cd01992 PP-ATPase N-terminal d 97.3 0.0056 1.2E-07 41.6 10.3 94 6-131 1-108 (185)
23 PRK12342 hypothetical protein; 96.9 0.012 2.7E-07 42.2 8.6 104 12-153 32-139 (254)
24 COG2086 FixA Electron transfer 96.8 0.017 3.8E-07 41.5 9.0 106 10-154 32-142 (260)
25 PRK03359 putative electron tra 96.7 0.012 2.7E-07 42.3 7.5 87 12-131 33-124 (256)
26 cd01993 Alpha_ANH_like_II This 96.6 0.059 1.3E-06 36.5 10.0 92 6-129 1-116 (185)
27 PF00448 SRP54: SRP54-type pro 96.0 0.16 3.4E-06 35.1 9.7 92 7-135 5-99 (196)
28 COG0037 MesJ tRNA(Ile)-lysidin 95.9 0.17 3.6E-06 37.1 10.1 93 5-131 22-132 (298)
29 PF01012 ETF: Electron transfe 95.8 0.081 1.8E-06 35.3 7.5 89 6-131 1-102 (164)
30 PRK10696 tRNA 2-thiocytidine b 95.7 0.25 5.4E-06 35.7 9.9 92 4-130 29-142 (258)
31 PRK13820 argininosuccinate syn 95.6 0.36 7.8E-06 37.1 11.0 38 3-43 1-39 (394)
32 PRK05253 sulfate adenylyltrans 95.0 0.49 1.1E-05 35.0 9.6 94 4-131 27-139 (301)
33 TIGR00591 phr2 photolyase PhrI 94.6 0.49 1.1E-05 37.1 9.3 91 12-128 32-122 (454)
34 PLN00200 argininosuccinate syn 94.5 1.5 3.3E-05 33.8 11.6 38 3-43 4-41 (404)
35 PRK10867 signal recognition pa 94.4 1.1 2.3E-05 35.0 10.7 91 8-134 105-198 (433)
36 TIGR00268 conserved hypothetic 94.3 1.1 2.4E-05 32.2 10.0 89 3-129 11-117 (252)
37 cd01985 ETF The electron trans 94.1 0.88 1.9E-05 30.9 8.8 24 108-131 80-103 (181)
38 COG0541 Ffh Signal recognition 93.4 2.4 5.1E-05 33.0 10.6 95 7-138 104-201 (451)
39 PRK05579 bifunctional phosphop 93.2 0.67 1.4E-05 35.8 7.7 38 1-39 3-40 (399)
40 TIGR02039 CysD sulfate adenyly 93.2 2.3 5E-05 31.4 10.1 93 4-130 19-130 (294)
41 COG0041 PurE Phosphoribosylcar 93.2 1.4 3E-05 29.2 7.9 72 81-160 15-90 (162)
42 TIGR01162 purE phosphoribosyla 93.0 1.4 3E-05 29.3 7.9 72 81-160 11-86 (156)
43 PF02441 Flavoprotein: Flavopr 93.0 0.82 1.8E-05 29.2 6.9 109 5-158 1-118 (129)
44 TIGR00959 ffh signal recogniti 93.0 2.7 6E-05 32.8 10.7 91 7-133 103-196 (428)
45 PRK14665 mnmA tRNA-specific 2- 92.9 3.3 7.1E-05 31.6 12.1 36 3-42 4-39 (360)
46 PRK07313 phosphopantothenoylcy 92.9 0.75 1.6E-05 31.4 6.8 35 4-39 1-35 (182)
47 KOG1467 Translation initiation 92.9 2.1 4.5E-05 33.7 9.7 107 6-159 361-470 (556)
48 PRK10660 tilS tRNA(Ile)-lysidi 92.6 1.9 4.1E-05 33.8 9.5 66 4-101 15-81 (436)
49 TIGR01425 SRP54_euk signal rec 92.2 4.1 9E-05 31.8 10.7 91 8-135 105-198 (429)
50 TIGR00032 argG argininosuccina 92.2 3.4 7.3E-05 32.0 10.2 34 6-43 1-34 (394)
51 PRK13982 bifunctional SbtC-lik 92.0 1.3 2.9E-05 34.9 7.9 36 3-39 69-104 (475)
52 PF00731 AIRC: AIR carboxylase 91.9 2.5 5.4E-05 28.0 8.1 72 81-160 13-88 (150)
53 COG0299 PurN Folate-dependent 91.9 3 6.5E-05 28.8 9.8 82 5-127 1-87 (200)
54 PF02601 Exonuc_VII_L: Exonucl 91.5 1.2 2.5E-05 33.2 7.0 61 101-161 49-118 (319)
55 cd01990 Alpha_ANH_like_I This 91.2 3.6 7.8E-05 28.3 9.2 86 7-129 1-105 (202)
56 PF00875 DNA_photolyase: DNA p 91.1 0.84 1.8E-05 30.4 5.4 114 16-158 12-125 (165)
57 TIGR00853 pts-lac PTS system, 90.8 1.2 2.6E-05 27.0 5.4 70 82-162 18-87 (95)
58 PRK06027 purU formyltetrahydro 90.8 5.2 0.00011 29.5 9.9 83 4-129 89-175 (286)
59 cd01713 PAPS_reductase This do 90.7 3.3 7.3E-05 27.1 10.2 38 6-44 1-38 (173)
60 PRK12563 sulfate adenylyltrans 90.7 4.9 0.00011 30.0 9.4 44 4-47 37-80 (312)
61 TIGR00655 PurU formyltetrahydr 90.3 5 0.00011 29.5 9.2 83 4-129 84-170 (280)
62 cd05565 PTS_IIB_lactose PTS_II 90.2 0.52 1.1E-05 28.8 3.4 70 81-161 14-83 (99)
63 COG1927 Mtd Coenzyme F420-depe 90.2 3 6.4E-05 29.2 7.3 69 87-160 23-97 (277)
64 KOG1650 Predicted K+/H+-antipo 90.0 2.5 5.4E-05 35.6 8.2 41 5-45 615-655 (769)
65 COG1606 ATP-utilizing enzymes 89.6 6.2 0.00013 28.6 9.8 90 3-129 16-123 (269)
66 PRK13010 purU formyltetrahydro 89.5 5.7 0.00012 29.4 8.9 83 4-129 93-179 (289)
67 TIGR03556 photolyase_8HDF deox 89.4 2.4 5.2E-05 33.5 7.4 87 15-128 13-99 (471)
68 TIGR02765 crypto_DASH cryptoch 89.3 8.4 0.00018 30.0 10.3 97 12-129 10-106 (429)
69 PRK11889 flhF flagellar biosyn 89.3 7.8 0.00017 30.2 9.7 53 82-134 283-335 (436)
70 cd01995 ExsB ExsB is a transcr 89.1 4.9 0.00011 26.7 9.7 34 6-43 1-34 (169)
71 cd05564 PTS_IIB_chitobiose_lic 88.9 1.4 3E-05 26.7 4.6 70 82-162 14-83 (96)
72 KOG3180 Electron transfer flav 88.9 2.8 6.1E-05 29.0 6.4 81 13-128 38-123 (254)
73 COG0552 FtsY Signal recognitio 88.7 7.1 0.00015 29.4 8.9 90 7-134 143-236 (340)
74 PF07355 GRDB: Glycine/sarcosi 88.7 2 4.4E-05 32.4 6.1 68 88-156 41-117 (349)
75 PRK09590 celB cellobiose phosp 88.6 1.2 2.7E-05 27.5 4.3 71 82-161 16-86 (104)
76 TIGR02113 coaC_strep phosphopa 88.2 3.2 7E-05 28.2 6.5 34 5-39 1-34 (177)
77 PRK00286 xseA exodeoxyribonucl 87.2 3.7 8.1E-05 32.1 7.2 60 102-161 171-235 (438)
78 COG1184 GCD2 Translation initi 87.2 10 0.00022 28.1 10.6 67 85-158 160-229 (301)
79 TIGR02852 spore_dpaB dipicolin 87.0 6.9 0.00015 26.9 7.6 34 5-39 1-35 (187)
80 cd01986 Alpha_ANH_like Adenine 86.6 5.3 0.00011 24.2 7.1 34 7-44 1-34 (103)
81 PRK00109 Holliday junction res 86.5 1.9 4E-05 28.1 4.4 54 107-160 42-99 (138)
82 PLN02331 phosphoribosylglycina 86.3 9.2 0.0002 26.8 9.7 82 6-128 1-87 (207)
83 PF07279 DUF1442: Protein of u 86.2 9.6 0.00021 26.8 8.2 33 5-38 43-75 (218)
84 PRK15424 propionate catabolism 85.9 4.5 9.7E-05 32.6 7.1 69 81-161 23-94 (538)
85 COG1570 XseA Exonuclease VII, 85.9 4 8.7E-05 31.8 6.5 77 82-158 151-233 (440)
86 PF02844 GARS_N: Phosphoribosy 85.3 0.99 2.2E-05 27.6 2.5 24 105-128 48-71 (100)
87 PRK06029 3-octaprenyl-4-hydrox 85.3 1.5 3.3E-05 30.0 3.7 36 4-39 1-36 (185)
88 cd02067 B12-binding B12 bindin 85.1 6.4 0.00014 24.5 6.4 46 85-131 17-62 (119)
89 TIGR00237 xseA exodeoxyribonuc 84.7 6.9 0.00015 30.7 7.5 60 102-161 165-230 (432)
90 PF04244 DPRP: Deoxyribodipyri 84.4 5.7 0.00012 28.2 6.3 76 81-161 48-128 (224)
91 TIGR02329 propionate_PrpR prop 84.3 8.6 0.00019 31.0 8.0 69 82-162 14-85 (526)
92 PF05582 Peptidase_U57: YabG p 84.0 4.9 0.00011 29.5 5.9 49 81-129 115-164 (287)
93 TIGR02069 cyanophycinase cyano 83.9 14 0.0003 26.7 9.1 102 8-146 1-109 (250)
94 PRK00994 F420-dependent methyl 83.8 8.7 0.00019 27.5 6.9 70 87-161 23-98 (277)
95 KOG0780 Signal recognition par 83.6 15 0.00033 28.5 8.5 89 7-132 105-196 (483)
96 PF13167 GTP-bdg_N: GTP-bindin 83.4 7.9 0.00017 23.5 7.1 47 81-127 7-65 (95)
97 PF03652 UPF0081: Uncharacteri 83.3 2.5 5.3E-05 27.4 3.9 56 105-160 37-97 (135)
98 PRK00779 ornithine carbamoyltr 83.3 17 0.00036 27.1 10.2 29 1-29 1-30 (304)
99 PRK05703 flhF flagellar biosyn 83.2 20 0.00044 28.1 9.5 84 12-134 230-314 (424)
100 cd08550 GlyDH-like Glycerol_de 82.5 9.2 0.0002 28.9 7.2 70 83-160 37-111 (349)
101 TIGR02855 spore_yabG sporulati 82.5 6.6 0.00014 28.7 6.0 49 81-129 114-163 (283)
102 PRK14664 tRNA-specific 2-thiou 82.0 21 0.00045 27.4 11.0 35 3-41 4-38 (362)
103 COG0452 Dfp Phosphopantothenoy 81.9 9 0.0002 29.6 7.0 39 1-40 1-39 (392)
104 PRK08576 hypothetical protein; 81.8 23 0.0005 27.9 9.2 34 6-43 236-269 (438)
105 PRK00771 signal recognition pa 81.5 24 0.00052 27.8 10.5 33 8-41 100-132 (437)
106 cd01714 ETF_beta The electron 81.5 15 0.00033 25.5 7.9 30 12-41 32-61 (202)
107 PRK13011 formyltetrahydrofolat 81.2 20 0.00042 26.5 9.3 82 4-128 89-174 (286)
108 PRK11914 diacylglycerol kinase 81.1 14 0.0003 27.3 7.7 70 82-158 26-96 (306)
109 PRK00509 argininosuccinate syn 80.9 24 0.00053 27.4 11.7 38 4-44 2-39 (399)
110 TIGR00250 RNAse_H_YqgF RNAse H 80.6 4.7 0.0001 25.9 4.4 55 106-160 35-93 (130)
111 COG1066 Sms Predicted ATP-depe 80.1 24 0.00052 27.7 8.5 108 9-158 96-218 (456)
112 PRK10674 deoxyribodipyrimidine 80.1 24 0.00052 28.0 9.0 93 12-128 11-105 (472)
113 PF03575 Peptidase_S51: Peptid 80.0 4 8.7E-05 26.9 4.1 48 84-133 2-49 (154)
114 cd00954 NAL N-Acetylneuraminic 79.8 17 0.00036 26.7 7.7 51 110-160 87-138 (288)
115 PRK04527 argininosuccinate syn 79.7 27 0.00058 27.2 10.6 37 4-44 2-38 (400)
116 TIGR00342 thiazole biosynthesi 79.6 26 0.00056 26.9 10.6 36 4-43 172-207 (371)
117 TIGR01918 various_sel_PB selen 79.4 9.4 0.0002 29.8 6.3 63 94-156 42-113 (431)
118 TIGR01917 gly_red_sel_B glycin 79.4 9.7 0.00021 29.7 6.3 64 93-156 41-113 (431)
119 COG1597 LCB5 Sphingosine kinas 79.1 19 0.00042 26.7 7.8 73 80-158 18-91 (301)
120 PRK00143 mnmA tRNA-specific 2- 79.0 26 0.00056 26.6 10.2 35 5-43 1-35 (346)
121 PLN02828 formyltetrahydrofolat 78.4 24 0.00051 25.9 9.7 87 3-129 69-157 (268)
122 COG0329 DapA Dihydrodipicolina 78.1 26 0.00055 26.1 10.4 54 108-161 88-141 (299)
123 TIGR02699 archaeo_AfpA archaeo 77.9 13 0.00027 25.3 6.0 33 6-38 1-34 (174)
124 PRK00919 GMP synthase subunit 77.1 28 0.00061 26.0 10.1 37 5-44 22-58 (307)
125 cd02070 corrinoid_protein_B12- 77.0 15 0.00033 25.4 6.4 69 85-156 100-171 (201)
126 TIGR00930 2a30 K-Cl cotranspor 77.0 51 0.0011 28.9 11.4 122 6-158 577-709 (953)
127 PRK15411 rcsA colanic acid cap 76.9 22 0.00048 24.7 7.7 69 82-157 11-84 (207)
128 TIGR02766 crypt_chrom_pln cryp 76.9 35 0.00077 27.1 10.1 87 15-128 10-96 (475)
129 KOG1552 Predicted alpha/beta h 76.9 9.2 0.0002 27.7 5.3 65 93-158 125-200 (258)
130 PRK08185 hypothetical protein; 76.8 9.5 0.00021 28.1 5.5 55 105-159 23-77 (283)
131 PRK13059 putative lipid kinase 76.6 28 0.0006 25.7 8.2 70 82-158 19-90 (295)
132 PRK04147 N-acetylneuraminate l 76.5 19 0.00041 26.5 7.2 79 81-160 60-140 (293)
133 cd00408 DHDPS-like Dihydrodipi 76.5 26 0.00055 25.5 7.8 80 81-161 53-134 (281)
134 cd07044 CofD_YvcK Family of Co 76.3 5.4 0.00012 29.8 4.2 51 106-159 163-215 (309)
135 PRK08535 translation initiatio 75.9 31 0.00066 25.8 10.8 65 87-158 163-230 (310)
136 PRK03170 dihydrodipicolinate s 75.9 25 0.00055 25.8 7.7 79 81-160 57-137 (292)
137 cd00952 CHBPH_aldolase Trans-o 75.8 27 0.00059 26.0 7.9 79 81-160 64-145 (309)
138 PLN02948 phosphoribosylaminoim 75.8 23 0.0005 29.0 7.9 72 81-160 423-498 (577)
139 TIGR00524 eIF-2B_rel eIF-2B al 75.7 31 0.00067 25.8 8.0 67 87-158 170-239 (303)
140 COG1440 CelA Phosphotransferas 75.7 8.7 0.00019 23.6 4.2 68 83-161 17-84 (102)
141 TIGR00064 ftsY signal recognit 75.5 29 0.00063 25.4 10.2 50 84-133 116-168 (272)
142 TIGR00884 guaA_Cterm GMP synth 75.4 32 0.00069 25.8 10.2 37 5-44 17-53 (311)
143 cd00950 DHDPS Dihydrodipicolin 75.3 22 0.00047 26.0 7.2 79 81-160 56-136 (284)
144 PRK11070 ssDNA exonuclease Rec 75.0 30 0.00064 28.4 8.3 36 94-129 126-161 (575)
145 PF04459 DUF512: Protein of un 74.9 26 0.00056 24.5 8.0 79 82-160 110-203 (204)
146 cd03557 L-arabinose_isomerase 74.8 28 0.0006 27.9 7.9 72 83-160 24-101 (484)
147 PF03808 Glyco_tran_WecB: Glyc 74.1 23 0.0005 23.8 6.6 45 106-156 88-132 (172)
148 PRK02261 methylaspartate mutas 74.1 13 0.00027 24.2 5.1 46 85-131 21-66 (137)
149 TIGR00521 coaBC_dfp phosphopan 74.0 39 0.00085 26.2 9.5 36 3-39 2-37 (390)
150 PRK13055 putative lipid kinase 73.7 36 0.00078 25.6 8.5 72 81-158 19-93 (334)
151 PRK05920 aromatic acid decarbo 73.7 7.3 0.00016 27.2 4.1 36 3-39 2-37 (204)
152 COG0191 Fba Fructose/tagatose 73.7 15 0.00032 27.1 5.7 76 85-160 7-85 (286)
153 cd08170 GlyDH Glycerol dehydro 73.5 31 0.00067 26.1 7.8 72 82-160 36-111 (351)
154 cd06533 Glyco_transf_WecG_TagA 73.4 23 0.00049 23.9 6.4 44 107-156 87-130 (171)
155 COG1646 Predicted phosphate-bi 73.4 31 0.00067 24.7 7.5 54 106-161 28-81 (240)
156 TIGR00511 ribulose_e2b2 ribose 73.2 36 0.00077 25.4 10.6 65 87-158 158-225 (301)
157 cd01997 GMP_synthase_C The C-t 73.1 36 0.00077 25.3 9.5 35 6-43 1-35 (295)
158 PRK00074 guaA GMP synthase; Re 73.0 48 0.001 26.7 10.9 37 4-43 215-251 (511)
159 COG1058 CinA Predicted nucleot 73.0 21 0.00046 25.9 6.4 71 81-155 20-92 (255)
160 COG3360 Uncharacterized conser 72.9 12 0.00025 21.1 3.9 44 2-45 4-47 (71)
161 TIGR02370 pyl_corrinoid methyl 72.8 23 0.0005 24.5 6.5 61 85-148 102-162 (197)
162 PF09043 Lys-AminoMut_A: D-Lys 72.7 16 0.00035 28.6 6.0 48 96-143 147-197 (509)
163 TIGR00674 dapA dihydrodipicoli 72.7 29 0.00064 25.4 7.3 79 81-160 54-134 (285)
164 TIGR01826 CofD_related conserv 72.2 9.2 0.0002 28.6 4.5 51 106-159 161-213 (310)
165 PF06574 FAD_syn: FAD syntheta 72.2 26 0.00056 23.3 6.5 120 16-159 20-146 (157)
166 TIGR00683 nanA N-acetylneurami 72.0 37 0.0008 25.0 7.8 79 81-160 57-138 (290)
167 PF01933 UPF0052: Uncharacteri 71.9 9.6 0.00021 28.3 4.6 51 106-159 172-224 (300)
168 TIGR00420 trmU tRNA (5-methyla 71.8 42 0.00092 25.6 9.9 33 5-41 1-33 (352)
169 PRK06372 translation initiatio 71.7 23 0.0005 25.7 6.3 66 86-158 125-193 (253)
170 PRK08305 spoVFB dipicolinate s 71.7 9.9 0.00022 26.4 4.3 37 2-39 3-40 (196)
171 smart00851 MGS MGS-like domain 71.7 18 0.00039 21.3 5.2 64 90-154 25-89 (90)
172 PRK05720 mtnA methylthioribose 71.4 43 0.00093 25.5 8.1 67 88-159 199-268 (344)
173 TIGR02313 HpaI-NOT-DapA 2,4-di 71.2 34 0.00073 25.3 7.4 79 81-160 56-137 (294)
174 cd02071 MM_CoA_mut_B12_BD meth 71.1 17 0.00036 22.9 5.1 46 85-131 17-62 (122)
175 COG0137 ArgG Argininosuccinate 71.0 47 0.001 25.8 11.5 115 1-135 1-128 (403)
176 TIGR01501 MthylAspMutase methy 70.7 18 0.00039 23.5 5.1 45 85-130 19-63 (134)
177 TIGR00640 acid_CoA_mut_C methy 70.6 21 0.00044 23.0 5.4 60 85-147 20-79 (132)
178 cd08171 GlyDH-like2 Glycerol d 70.6 27 0.00059 26.4 6.9 70 83-160 37-112 (345)
179 PF01008 IF-2B: Initiation fac 70.5 39 0.00084 24.6 10.0 66 87-158 150-218 (282)
180 PRK14974 cell division protein 70.5 45 0.00097 25.3 10.4 52 82-133 182-236 (336)
181 cd01712 ThiI ThiI is required 70.2 30 0.00065 23.2 10.6 35 6-44 1-35 (177)
182 PRK12726 flagellar biosynthesi 70.1 50 0.0011 25.8 9.5 51 84-134 250-300 (407)
183 cd02072 Glm_B12_BD B12 binding 70.0 19 0.00042 23.1 5.1 44 87-131 19-62 (128)
184 cd03145 GAT1_cyanophycinase Ty 69.8 35 0.00077 23.9 10.3 95 16-147 13-111 (217)
185 COG0816 Predicted endonuclease 69.7 15 0.00032 24.1 4.6 53 107-159 41-97 (141)
186 PRK09195 gatY tagatose-bisphos 69.7 21 0.00046 26.4 5.9 58 102-159 25-83 (284)
187 PRK06801 hypothetical protein; 69.6 24 0.00053 26.0 6.2 71 89-159 11-83 (286)
188 PRK06806 fructose-bisphosphate 69.4 43 0.00093 24.7 7.7 76 82-157 115-207 (281)
189 PRK13054 lipid kinase; Reviewe 69.3 43 0.00093 24.7 8.4 69 84-158 20-92 (300)
190 PRK10416 signal recognition pa 69.3 46 0.001 25.0 10.9 50 85-134 159-211 (318)
191 cd07186 CofD_like LPPG:FO 2-ph 69.1 26 0.00056 26.2 6.2 50 106-158 172-223 (303)
192 PRK12737 gatY tagatose-bisphos 69.1 23 0.00051 26.1 6.0 74 87-160 9-84 (284)
193 PF10087 DUF2325: Uncharacteri 68.8 23 0.00049 21.3 6.4 72 82-159 10-84 (97)
194 cd02069 methionine_synthase_B1 68.7 28 0.00061 24.4 6.2 68 85-155 106-174 (213)
195 PRK06806 fructose-bisphosphate 68.3 28 0.00062 25.6 6.3 73 87-159 9-83 (281)
196 COG3340 PepE Peptidase E [Amin 68.2 40 0.00087 23.9 9.8 46 81-128 48-93 (224)
197 PF07476 MAAL_C: Methylasparta 67.9 42 0.00091 24.0 9.3 54 81-134 122-176 (248)
198 TIGR01858 tag_bisphos_ald clas 67.8 26 0.00057 25.8 6.1 72 89-160 9-82 (282)
199 PRK12857 fructose-1,6-bisphosp 67.7 27 0.00058 25.8 6.1 73 88-160 10-84 (284)
200 cd00951 KDGDH 5-dehydro-4-deox 67.6 36 0.00078 25.0 6.9 76 81-158 56-133 (289)
201 PRK13337 putative lipid kinase 67.6 48 0.001 24.5 7.9 71 82-158 19-91 (304)
202 cd07187 YvcK_like family of mo 67.2 13 0.00028 27.8 4.4 51 106-159 164-216 (308)
203 COG0655 WrbA Multimeric flavod 67.2 39 0.00085 23.4 7.7 39 6-44 5-43 (207)
204 cd00578 L-fuc_L-ara-isomerases 67.2 44 0.00095 26.3 7.6 74 81-160 22-98 (452)
205 PRK02929 L-arabinose isomerase 67.0 54 0.0012 26.4 8.0 69 84-158 31-105 (499)
206 PF01884 PcrB: PcrB family; I 66.9 25 0.00054 25.1 5.6 52 106-161 19-70 (230)
207 TIGR03573 WbuX N-acetyl sugar 66.7 54 0.0012 24.9 9.0 24 107-130 148-171 (343)
208 TIGR00715 precor6x_red precorr 66.3 33 0.00072 24.9 6.3 54 101-160 178-233 (256)
209 cd00946 FBP_aldolase_IIA Class 66.3 28 0.00061 26.5 6.1 72 89-160 9-97 (345)
210 COG0036 Rpe Pentose-5-phosphat 65.9 35 0.00076 24.2 6.1 57 87-145 101-157 (220)
211 COG0788 PurU Formyltetrahydrof 65.6 51 0.0011 24.2 8.3 44 85-128 128-175 (287)
212 cd03364 TOPRIM_DnaG_primases T 65.5 20 0.00044 20.4 4.3 35 4-38 43-77 (79)
213 TIGR01769 GGGP geranylgeranylg 65.2 19 0.00041 25.2 4.7 48 111-160 16-63 (205)
214 TIGR00512 salvage_mtnA S-methy 65.1 59 0.0013 24.7 8.3 65 89-158 200-267 (331)
215 PRK05647 purN phosphoribosylgl 65.1 44 0.00095 23.2 9.6 42 87-128 43-89 (200)
216 cd06375 PBP1_mGluR_groupII Lig 65.0 67 0.0015 25.3 10.3 25 106-130 243-267 (458)
217 PRK05370 argininosuccinate syn 64.9 52 0.0011 26.1 7.3 112 4-133 11-136 (447)
218 TIGR01859 fruc_bis_ald_ fructo 64.8 44 0.00096 24.6 6.8 76 82-157 115-207 (282)
219 COG0391 Uncharacterized conser 64.7 16 0.00034 27.5 4.4 50 106-158 178-229 (323)
220 cd00947 TBP_aldolase_IIB Tagat 64.0 27 0.00059 25.7 5.5 72 89-160 6-79 (276)
221 PRK12723 flagellar biosynthesi 63.9 67 0.0015 24.9 9.9 83 11-133 182-268 (388)
222 cd01998 tRNA_Me_trans tRNA met 63.4 64 0.0014 24.5 10.2 33 6-42 1-33 (349)
223 PF05728 UPF0227: Uncharacteri 63.4 31 0.00067 23.7 5.5 66 86-159 19-90 (187)
224 PRK00211 sulfur relay protein 63.2 29 0.00063 21.9 5.0 40 4-44 1-44 (119)
225 cd00532 MGS-like MGS-like doma 63.2 33 0.00072 21.2 5.9 64 92-155 39-104 (112)
226 cd01715 ETF_alpha The electron 62.6 43 0.00094 22.3 10.2 25 107-131 71-95 (168)
227 PF01596 Methyltransf_3: O-met 62.6 23 0.00049 24.7 4.8 48 82-129 81-131 (205)
228 TIGR00290 MJ0570_dom MJ0570-re 62.5 33 0.00072 24.4 5.6 48 83-131 99-146 (223)
229 PF03358 FMN_red: NADPH-depend 62.4 40 0.00086 21.8 7.2 29 15-43 14-42 (152)
230 TIGR00147 lipid kinase, YegS/R 62.2 59 0.0013 23.8 8.0 72 81-158 18-91 (293)
231 PRK14561 hypothetical protein; 61.9 49 0.0011 22.8 9.3 31 6-41 2-32 (194)
232 cd01996 Alpha_ANH_like_III Thi 61.8 41 0.00089 21.8 9.8 34 6-42 3-36 (154)
233 PRK13057 putative lipid kinase 61.8 53 0.0012 24.0 6.8 68 83-158 14-82 (287)
234 PHA02031 putative DnaG-like pr 61.7 13 0.00029 27.0 3.5 37 4-40 206-242 (266)
235 PF14639 YqgF: Holliday-juncti 61.7 12 0.00027 24.7 3.1 18 109-126 53-70 (150)
236 PF01207 Dus: Dihydrouridine s 61.3 66 0.0014 24.0 7.9 71 85-155 112-188 (309)
237 PRK12738 kbaY tagatose-bisphos 61.1 44 0.00095 24.8 6.2 72 89-160 11-84 (286)
238 TIGR03249 KdgD 5-dehydro-4-deo 61.1 51 0.0011 24.3 6.6 75 81-157 61-137 (296)
239 cd05403 NT_KNTase_like Nucleot 61.0 11 0.00024 21.9 2.7 61 97-160 17-77 (93)
240 PF01261 AP_endonuc_2: Xylose 60.8 29 0.00062 23.5 5.1 80 18-121 70-157 (213)
241 COG1504 Uncharacterized conser 60.5 23 0.00049 22.2 3.9 40 117-159 59-98 (121)
242 PRK08745 ribulose-phosphate 3- 60.4 40 0.00086 23.9 5.7 41 87-128 161-201 (223)
243 PF02142 MGS: MGS-like domain 60.3 10 0.00022 22.7 2.5 65 89-154 24-94 (95)
244 PF02310 B12-binding: B12 bind 60.2 38 0.00082 20.8 7.8 46 84-130 17-62 (121)
245 PRK12388 fructose-1,6-bisphosp 59.9 72 0.0016 24.0 8.1 43 85-129 167-209 (321)
246 COG0320 LipA Lipoate synthase 59.8 33 0.00072 25.3 5.2 50 80-129 199-251 (306)
247 PRK06371 translation initiatio 59.8 75 0.0016 24.1 8.5 66 88-158 189-257 (329)
248 PRK05772 translation initiatio 59.8 79 0.0017 24.4 8.6 64 90-158 222-288 (363)
249 COG1201 Lhr Lhr-like helicases 59.7 96 0.0021 26.8 8.5 89 5-128 39-132 (814)
250 PRK03620 5-dehydro-4-deoxygluc 59.2 57 0.0012 24.2 6.6 77 81-159 63-141 (303)
251 cd01994 Alpha_ANH_like_IV This 59.0 57 0.0012 22.5 8.6 34 6-43 1-34 (194)
252 PRK09197 fructose-bisphosphate 59.0 49 0.0011 25.3 6.2 75 86-160 11-102 (350)
253 PRK08335 translation initiatio 58.7 71 0.0015 23.5 10.6 64 88-158 153-219 (275)
254 PRK10481 hypothetical protein; 58.6 64 0.0014 23.0 7.5 54 95-155 153-211 (224)
255 PRK00861 putative lipid kinase 58.6 71 0.0015 23.5 7.7 67 84-158 22-89 (300)
256 TIGR00330 glpX fructose-1,6-bi 58.5 77 0.0017 23.8 8.1 43 85-129 167-209 (321)
257 PRK07998 gatY putative fructos 58.2 42 0.0009 24.8 5.6 71 89-159 11-83 (283)
258 cd00947 TBP_aldolase_IIB Tagat 58.2 73 0.0016 23.5 6.9 75 82-156 110-202 (276)
259 TIGR00646 MG010 DNA primase-re 57.9 25 0.00053 24.9 4.2 37 4-40 154-190 (218)
260 COG0415 PhrB Deoxyribodipyrimi 57.7 97 0.0021 24.8 8.1 90 12-129 11-100 (461)
261 PRK06849 hypothetical protein; 57.5 35 0.00075 26.2 5.4 37 1-41 1-37 (389)
262 TIGR00347 bioD dethiobiotin sy 57.5 33 0.00072 22.6 4.8 21 17-38 12-32 (166)
263 TIGR00177 molyb_syn molybdenum 57.5 39 0.00084 21.9 5.0 42 85-126 30-73 (144)
264 TIGR01859 fruc_bis_ald_ fructo 57.3 54 0.0012 24.2 6.1 70 89-158 9-82 (282)
265 PRK10653 D-ribose transporter 57.2 72 0.0016 23.1 7.5 72 81-158 42-115 (295)
266 PRK00766 hypothetical protein; 57.1 45 0.00097 23.2 5.3 58 95-156 42-104 (194)
267 COG2102 Predicted ATPases of P 57.1 68 0.0015 22.8 6.3 53 81-134 98-150 (223)
268 PF06506 PrpR_N: Propionate ca 57.0 55 0.0012 22.0 5.8 50 98-159 10-62 (176)
269 PF01012 ETF: Electron transfe 56.8 54 0.0012 21.6 7.0 82 80-161 17-101 (164)
270 PRK08091 ribulose-phosphate 3- 56.8 49 0.0011 23.6 5.6 41 87-128 169-209 (228)
271 cd01999 Argininosuccinate_Synt 56.6 93 0.002 24.2 9.6 35 7-44 1-35 (385)
272 cd02065 B12-binding_like B12 b 56.6 45 0.00097 20.6 6.2 68 85-156 17-86 (125)
273 PF13662 Toprim_4: Toprim doma 56.5 14 0.00031 21.2 2.6 33 4-36 46-78 (81)
274 TIGR03702 lip_kinase_YegS lipi 56.4 78 0.0017 23.3 8.3 68 85-158 17-88 (293)
275 cd00958 DhnA Class I fructose- 56.3 68 0.0015 22.6 7.2 69 82-158 109-187 (235)
276 PRK03692 putative UDP-N-acetyl 56.1 74 0.0016 22.9 6.6 42 108-155 146-187 (243)
277 PF02887 PK_C: Pyruvate kinase 56.0 35 0.00075 21.2 4.4 45 107-160 4-49 (117)
278 PRK08392 hypothetical protein; 55.9 55 0.0012 22.9 5.8 69 82-152 137-205 (215)
279 TIGR00167 cbbA ketose-bisphosp 55.8 64 0.0014 23.9 6.3 73 87-159 9-86 (288)
280 PRK08057 cobalt-precorrin-6x r 55.4 53 0.0012 23.7 5.8 52 103-160 173-225 (248)
281 PF12982 DUF3866: Protein of u 55.3 88 0.0019 23.6 10.4 57 108-164 164-230 (320)
282 smart00732 YqgFc Likely ribonu 55.2 42 0.0009 19.8 4.7 54 107-160 39-94 (99)
283 PF00072 Response_reg: Respons 55.2 42 0.00092 19.9 7.2 71 82-159 9-80 (112)
284 PRK06731 flhF flagellar biosyn 55.1 81 0.0018 23.1 10.4 52 83-134 118-169 (270)
285 PF03162 Y_phosphatase2: Tyros 54.8 36 0.00078 22.8 4.5 72 89-160 26-101 (164)
286 PRK02628 nadE NAD synthetase; 54.7 72 0.0016 26.8 7.1 38 3-40 360-400 (679)
287 PF02571 CbiJ: Precorrin-6x re 54.6 46 0.00099 24.1 5.3 55 101-161 175-230 (249)
288 KOG1650 Predicted K+/H+-antipo 54.6 1.4E+02 0.003 25.6 10.4 144 5-159 444-600 (769)
289 KOG1643 Triosephosphate isomer 54.3 73 0.0016 22.5 5.9 80 82-161 18-97 (247)
290 COG0482 TrmU Predicted tRNA(5- 54.3 98 0.0021 23.8 8.5 38 3-44 2-39 (356)
291 PRK09722 allulose-6-phosphate 54.0 58 0.0013 23.2 5.7 39 89-128 161-199 (229)
292 TIGR00639 PurN phosphoribosylg 53.9 70 0.0015 22.0 10.0 42 88-129 43-89 (190)
293 PLN02589 caffeoyl-CoA O-methyl 53.9 82 0.0018 22.8 7.0 49 81-129 114-166 (247)
294 PRK08745 ribulose-phosphate 3- 53.8 78 0.0017 22.5 6.3 59 85-145 100-158 (223)
295 cd01971 Nitrogenase_VnfN_like 53.7 30 0.00065 27.1 4.6 28 105-132 102-129 (427)
296 PLN02476 O-methyltransferase 53.7 57 0.0012 24.1 5.7 52 78-129 150-204 (278)
297 PRK07315 fructose-bisphosphate 53.4 61 0.0013 24.1 5.9 70 89-158 11-85 (293)
298 cd05569 PTS_IIB_fructose PTS_I 53.3 27 0.00058 21.0 3.4 47 82-130 16-64 (96)
299 PF01116 F_bP_aldolase: Fructo 53.0 32 0.00069 25.5 4.4 70 87-156 8-79 (287)
300 cd01539 PBP1_GGBP Periplasmic 52.9 88 0.0019 22.8 7.5 71 81-157 15-89 (303)
301 COG0420 SbcD DNA repair exonuc 52.9 33 0.00071 26.4 4.7 24 81-106 26-49 (390)
302 PRK08883 ribulose-phosphate 3- 52.6 66 0.0014 22.7 5.8 45 82-127 152-196 (220)
303 cd06361 PBP1_GPC6A_like Ligand 52.5 1.1E+02 0.0023 23.7 10.4 26 106-131 245-270 (403)
304 PRK13399 fructose-1,6-bisphosp 52.5 70 0.0015 24.5 6.1 74 87-160 9-85 (347)
305 TIGR02634 xylF D-xylose ABC tr 52.5 90 0.0019 22.8 7.8 71 81-157 14-86 (302)
306 PF14582 Metallophos_3: Metall 52.4 30 0.00065 24.8 3.9 18 143-160 82-99 (255)
307 TIGR01521 FruBisAldo_II_B fruc 52.3 73 0.0016 24.4 6.2 72 89-160 9-83 (347)
308 PRK14057 epimerase; Provisiona 52.3 62 0.0013 23.6 5.6 39 89-128 185-223 (254)
309 cd06318 PBP1_ABC_sugar_binding 52.2 83 0.0018 22.3 8.2 72 81-158 15-88 (282)
310 PF13433 Peripla_BP_5: Peripla 52.1 74 0.0016 24.5 6.2 103 17-156 118-224 (363)
311 PF00781 DAGK_cat: Diacylglyce 52.0 58 0.0013 20.5 7.0 69 84-158 17-90 (130)
312 cd00885 cinA Competence-damage 51.8 70 0.0015 21.5 5.6 45 82-126 19-65 (170)
313 PF01177 Asp_Glu_race: Asp/Glu 51.8 44 0.00095 23.0 4.8 41 109-154 161-205 (216)
314 PF00834 Ribul_P_3_epim: Ribul 51.6 23 0.0005 24.6 3.3 46 82-128 151-196 (201)
315 PRK09195 gatY tagatose-bisphos 51.4 79 0.0017 23.4 6.2 74 82-155 115-207 (284)
316 PF07302 AroM: AroM protein; 51.4 87 0.0019 22.3 7.8 55 96-157 150-209 (221)
317 PF12683 DUF3798: Protein of u 51.3 96 0.0021 22.8 6.7 91 6-129 4-96 (275)
318 PRK08334 translation initiatio 51.2 1.1E+02 0.0024 23.5 10.1 64 90-158 214-280 (356)
319 TIGR02990 ectoine_eutA ectoine 51.1 90 0.002 22.4 6.5 67 82-154 132-210 (239)
320 PRK05627 bifunctional riboflav 51.1 1E+02 0.0022 23.1 8.8 28 16-43 28-55 (305)
321 COG1036 Archaeal flavoproteins 50.9 29 0.00062 23.4 3.4 74 82-161 57-136 (187)
322 cd03115 SRP The signal recogni 50.9 70 0.0015 21.1 10.4 31 9-40 6-36 (173)
323 TIGR00696 wecB_tagA_cpsF bacte 50.8 32 0.00069 23.4 3.8 21 108-128 89-109 (177)
324 TIGR00619 sbcd exonuclease Sbc 50.8 37 0.00081 24.4 4.4 24 82-107 26-49 (253)
325 cd00453 FTBP_aldolase_II Fruct 50.7 60 0.0013 24.7 5.5 70 91-160 8-95 (340)
326 PF01902 ATP_bind_4: ATP-bindi 50.6 73 0.0016 22.5 5.7 51 81-132 97-147 (218)
327 cd01516 FBPase_glpX Bacterial 50.4 1.1E+02 0.0023 23.0 8.2 43 85-129 167-209 (309)
328 COG0794 GutQ Predicted sugar p 50.4 38 0.00083 23.7 4.2 47 1-48 83-129 (202)
329 PRK06027 purU formyltetrahydro 50.3 1E+02 0.0022 22.8 11.5 69 81-159 64-146 (286)
330 PRK11106 queuosine biosynthesi 50.3 92 0.002 22.3 10.2 36 5-44 2-37 (231)
331 COG0707 MurG UDP-N-acetylgluco 50.2 1.1E+02 0.0025 23.4 10.5 101 5-161 183-283 (357)
332 PF11215 DUF3010: Protein of u 49.8 60 0.0013 21.2 4.7 50 109-158 51-102 (138)
333 cd01537 PBP1_Repressors_Sugar_ 49.8 84 0.0018 21.7 8.3 71 81-158 15-87 (264)
334 cd06315 PBP1_ABC_sugar_binding 49.8 94 0.002 22.3 7.3 72 81-158 16-89 (280)
335 COG1010 CobJ Precorrin-3B meth 49.3 98 0.0021 22.3 11.0 74 88-161 120-198 (249)
336 COG0042 tRNA-dihydrouridine sy 49.3 1.1E+02 0.0023 23.1 6.7 46 82-129 125-175 (323)
337 COG2185 Sbm Methylmalonyl-CoA 49.2 75 0.0016 20.9 5.8 67 85-154 30-96 (143)
338 smart00852 MoCF_biosynth Proba 48.9 68 0.0015 20.4 5.2 42 85-126 21-64 (135)
339 PRK09423 gldA glycerol dehydro 48.7 1.2E+02 0.0026 23.2 7.5 69 83-159 44-117 (366)
340 CHL00076 chlB photochlorophyll 48.6 38 0.00082 27.3 4.5 19 25-43 17-35 (513)
341 TIGR02260 benz_CoA_red_B benzo 48.5 42 0.00092 26.2 4.6 53 107-159 338-390 (413)
342 COG0745 OmpR Response regulato 48.5 96 0.0021 22.0 6.9 70 81-159 10-81 (229)
343 PRK12724 flagellar biosynthesi 48.4 1.4E+02 0.003 23.7 8.2 43 85-131 269-311 (432)
344 COG3640 CooC CO dehydrogenase 48.3 1E+02 0.0023 22.3 8.6 93 17-132 14-111 (255)
345 TIGR00273 iron-sulfur cluster- 48.2 49 0.0011 26.1 4.9 58 71-128 40-97 (432)
346 PLN02781 Probable caffeoyl-CoA 48.2 83 0.0018 22.4 5.8 51 78-128 100-153 (234)
347 PF02878 PGM_PMM_I: Phosphoglu 48.1 45 0.00098 21.3 4.1 41 4-44 40-80 (137)
348 cd06322 PBP1_ABC_sugar_binding 48.1 95 0.0021 21.8 7.7 72 81-158 15-88 (267)
349 PRK05595 replicative DNA helic 47.9 1.4E+02 0.003 23.6 7.4 50 111-160 303-361 (444)
350 cd02064 FAD_synthetase_N FAD s 47.9 85 0.0018 21.2 8.7 29 16-44 14-42 (180)
351 PRK08610 fructose-bisphosphate 47.8 88 0.0019 23.2 5.9 71 89-159 11-86 (286)
352 TIGR00169 leuB 3-isopropylmala 47.7 68 0.0015 24.5 5.5 24 16-39 164-187 (349)
353 cd01981 Pchlide_reductase_B Pc 47.7 41 0.0009 26.3 4.5 27 105-131 101-128 (430)
354 cd01972 Nitrogenase_VnfE_like 47.6 45 0.00097 26.1 4.7 26 105-130 105-131 (426)
355 PRK13606 LPPG:FO 2-phospho-L-l 47.5 87 0.0019 23.5 5.9 46 106-156 174-221 (303)
356 PRK06988 putative formyltransf 47.5 1.2E+02 0.0026 22.7 7.5 42 86-129 46-87 (312)
357 PRK08005 epimerase; Validated 47.4 98 0.0021 21.8 6.2 58 86-145 97-154 (210)
358 PRK08194 tartrate dehydrogenas 47.0 64 0.0014 24.7 5.3 24 16-39 162-185 (352)
359 PRK11921 metallo-beta-lactamas 46.9 1.3E+02 0.0029 23.2 9.4 48 82-131 263-312 (394)
360 PRK12361 hypothetical protein; 46.6 1.6E+02 0.0034 24.0 8.2 69 82-158 260-329 (547)
361 TIGR02088 LEU3_arch isopropylm 46.6 70 0.0015 24.2 5.3 25 15-39 141-165 (322)
362 PF02568 ThiI: Thiamine biosyn 46.5 98 0.0021 21.5 9.5 37 4-44 3-39 (197)
363 PF13727 CoA_binding_3: CoA-bi 46.4 24 0.00052 23.1 2.7 46 108-157 130-175 (175)
364 TIGR00364 exsB protein. This p 46.3 95 0.0021 21.3 11.6 21 109-129 101-121 (201)
365 TIGR01520 FruBisAldo_II_A fruc 46.2 1.2E+02 0.0025 23.4 6.5 75 86-160 17-109 (357)
366 TIGR01430 aden_deam adenosine 46.1 1.2E+02 0.0027 22.5 9.4 71 82-159 172-242 (324)
367 PF00701 DHDPS: Dihydrodipicol 45.8 1.2E+02 0.0026 22.2 8.0 78 81-159 57-136 (289)
368 TIGR00583 mre11 DNA repair pro 45.8 63 0.0014 25.2 5.2 11 149-159 109-119 (405)
369 COG0036 Rpe Pentose-5-phosphat 45.7 96 0.0021 22.1 5.6 25 104-128 175-199 (220)
370 cd01994 Alpha_ANH_like_IV This 45.7 99 0.0021 21.3 6.6 50 81-131 100-149 (194)
371 cd04795 SIS SIS domain. SIS (S 45.7 52 0.0011 18.6 3.9 36 3-39 46-81 (87)
372 PRK10499 PTS system N,N'-diace 45.6 71 0.0015 19.7 5.4 66 82-161 18-84 (106)
373 COG3969 Predicted phosphoadeno 45.5 45 0.00097 25.5 4.1 43 3-45 26-69 (407)
374 PF10236 DAP3: Mitochondrial r 45.3 59 0.0013 24.3 4.8 21 137-157 141-162 (309)
375 COG0381 WecB UDP-N-acetylgluco 45.2 1.5E+02 0.0032 23.1 9.0 42 3-44 2-43 (383)
376 cd06320 PBP1_allose_binding Pe 45.1 1.1E+02 0.0024 21.7 6.7 72 81-158 15-90 (275)
377 cd06327 PBP1_SBP_like_1 Peripl 45.1 1.2E+02 0.0027 22.3 7.7 48 82-129 150-200 (334)
378 TIGR00381 cdhD CO dehydrogenas 45.1 58 0.0013 25.3 4.7 50 107-156 141-194 (389)
379 PRK03767 NAD(P)H:quinone oxido 45.0 1E+02 0.0022 21.2 6.0 49 81-131 16-81 (200)
380 COG2242 CobL Precorrin-6B meth 45.0 36 0.00079 23.5 3.4 49 76-128 63-111 (187)
381 PRK07709 fructose-bisphosphate 44.7 1.3E+02 0.0028 22.4 7.6 74 82-155 118-208 (285)
382 PLN02417 dihydrodipicolinate s 44.5 1.2E+02 0.0027 22.1 6.9 77 81-160 57-135 (280)
383 COG1162 Predicted GTPases [Gen 44.4 1.3E+02 0.0029 22.5 9.3 90 7-131 85-176 (301)
384 TIGR03264 met_CoM_red_C methyl 44.3 1E+02 0.0022 21.2 5.3 69 86-160 53-138 (194)
385 PRK10411 DNA-binding transcrip 44.3 72 0.0016 22.8 5.0 56 108-163 154-214 (240)
386 PF03308 ArgK: ArgK protein; 44.2 1.3E+02 0.0028 22.2 7.3 119 5-160 28-154 (266)
387 PRK05234 mgsA methylglyoxal sy 44.1 90 0.0019 20.4 9.4 79 1-127 1-83 (142)
388 PRK13011 formyltetrahydrofolat 44.1 1.3E+02 0.0028 22.3 7.9 69 81-159 64-146 (286)
389 PRK06036 translation initiatio 44.1 1.4E+02 0.0031 22.7 8.3 64 89-158 201-267 (339)
390 PF13362 Toprim_3: Toprim doma 43.8 68 0.0015 18.9 4.6 38 3-40 40-79 (96)
391 cd08175 G1PDH Glycerol-1-phosp 43.6 1.1E+02 0.0024 23.2 6.1 67 84-159 39-113 (348)
392 PF01380 SIS: SIS domain SIS d 43.3 53 0.0011 20.3 3.9 41 3-44 52-92 (131)
393 PRK10906 DNA-binding transcrip 43.2 64 0.0014 23.3 4.7 54 109-162 154-212 (252)
394 PRK07084 fructose-bisphosphate 43.2 1.1E+02 0.0023 23.3 5.8 72 89-160 17-95 (321)
395 PF02729 OTCace_N: Aspartate/o 43.1 93 0.002 20.3 6.5 64 82-155 52-121 (142)
396 PRK09802 DNA-binding transcrip 43.1 75 0.0016 23.2 5.0 53 110-162 170-227 (269)
397 TIGR00930 2a30 K-Cl cotranspor 43.1 2.4E+02 0.0052 25.0 10.6 43 118-161 902-946 (953)
398 PF01507 PAPS_reduct: Phosphoa 43.0 94 0.002 20.3 7.8 36 6-45 1-36 (174)
399 cd01424 MGS_CPS_II Methylglyox 43.0 77 0.0017 19.3 5.8 62 91-155 39-100 (110)
400 cd01536 PBP1_ABC_sugar_binding 42.9 1.1E+02 0.0024 21.2 7.7 72 81-158 15-88 (267)
401 TIGR01279 DPOR_bchN light-inde 42.9 39 0.00085 26.3 3.7 27 105-131 100-127 (407)
402 TIGR01283 nifE nitrogenase mol 42.8 52 0.0011 26.0 4.4 25 105-129 137-162 (456)
403 cd03129 GAT1_Peptidase_E_like 42.7 1.1E+02 0.0024 21.1 9.8 54 82-137 44-98 (210)
404 PRK08091 ribulose-phosphate 3- 42.6 1.2E+02 0.0027 21.6 6.3 58 85-144 106-165 (228)
405 COG0069 GltB Glutamate synthas 42.4 1.2E+02 0.0025 24.5 6.1 34 97-130 305-338 (485)
406 PRK08610 fructose-bisphosphate 42.3 1.4E+02 0.0031 22.2 6.9 74 82-155 118-208 (286)
407 cd06323 PBP1_ribose_binding Pe 42.2 1.2E+02 0.0026 21.2 7.0 72 81-158 15-88 (268)
408 COG4126 Hydantoin racemase [Am 42.1 36 0.00079 24.2 3.1 39 108-154 163-201 (230)
409 PHA02546 47 endonuclease subun 42.1 57 0.0012 24.7 4.4 23 82-106 26-48 (340)
410 TIGR02667 moaB_proteo molybden 41.8 1E+02 0.0023 20.5 6.2 41 86-126 26-70 (163)
411 TIGR03499 FlhF flagellar biosy 41.8 1.4E+02 0.003 21.9 7.0 28 13-40 204-232 (282)
412 cd06282 PBP1_GntR_like_2 Ligan 41.8 1.2E+02 0.0026 21.2 8.4 69 81-156 15-85 (266)
413 cd01029 TOPRIM_primases TOPRIM 41.7 65 0.0014 18.1 4.1 31 5-35 44-74 (79)
414 COG0151 PurD Phosphoribosylami 41.7 28 0.0006 27.3 2.6 23 106-128 50-72 (428)
415 PF10808 DUF2542: Protein of u 41.6 38 0.00081 19.5 2.5 22 140-161 30-51 (79)
416 PTZ00170 D-ribulose-5-phosphat 41.6 1E+02 0.0023 21.8 5.4 27 102-128 177-203 (228)
417 PRK14723 flhF flagellar biosyn 41.6 2E+02 0.0043 24.8 7.6 49 83-134 230-278 (767)
418 COG2201 CheB Chemotaxis respon 41.6 1.6E+02 0.0035 22.6 7.8 71 82-158 12-82 (350)
419 cd00758 MoCF_BD MoCF_BD: molyb 41.4 93 0.002 19.8 5.1 42 85-126 22-65 (133)
420 TIGR00829 FRU PTS system, fruc 41.1 48 0.001 19.5 3.1 46 85-130 18-63 (85)
421 PRK12858 tagatose 1,6-diphosph 41.1 1.6E+02 0.0035 22.5 8.5 78 81-158 142-249 (340)
422 PRK00090 bioD dithiobiotin syn 41.0 84 0.0018 21.8 4.9 16 113-128 127-142 (222)
423 COG0003 ArsA Predicted ATPase 41.0 1.6E+02 0.0034 22.3 7.7 25 108-132 114-138 (322)
424 PRK09222 isocitrate dehydrogen 40.6 2E+02 0.0042 23.3 8.1 25 15-39 149-174 (482)
425 PRK09196 fructose-1,6-bisphosp 40.3 1.3E+02 0.0028 23.1 5.9 71 89-159 11-84 (347)
426 PF11965 DUF3479: Domain of un 40.1 1.2E+02 0.0025 20.5 7.5 46 82-127 46-93 (164)
427 cd02812 PcrB_like PcrB_like pr 40.0 75 0.0016 22.6 4.4 50 108-161 14-65 (219)
428 cd01968 Nitrogenase_NifE_I Nit 39.9 78 0.0017 24.6 5.0 26 105-130 102-128 (410)
429 COG0426 FpaA Uncharacterized f 39.9 1.8E+02 0.0039 22.7 10.5 49 81-131 261-309 (388)
430 cd07388 MPP_Tt1561 Thermus the 39.9 77 0.0017 22.5 4.5 15 111-125 23-37 (224)
431 KOG2310 DNA repair exonuclease 39.7 29 0.00062 28.2 2.5 21 107-127 40-60 (646)
432 PRK08005 epimerase; Validated 39.6 1.2E+02 0.0026 21.4 5.4 46 81-128 148-193 (210)
433 PRK14805 ornithine carbamoyltr 39.6 1.6E+02 0.0035 22.0 9.5 43 104-156 79-121 (302)
434 COG0434 SgcQ Predicted TIM-bar 39.4 61 0.0013 23.4 3.8 51 102-155 160-210 (263)
435 PRK07709 fructose-bisphosphate 39.4 1.6E+02 0.0034 21.9 6.2 71 89-159 11-86 (285)
436 PRK07998 gatY putative fructos 39.3 1.6E+02 0.0034 21.9 7.0 74 82-156 115-205 (283)
437 PRK08417 dihydroorotase; Provi 39.2 64 0.0014 24.8 4.4 29 17-45 180-208 (386)
438 cd06275 PBP1_PurR Ligand-bindi 39.2 1.3E+02 0.0029 21.0 8.4 71 81-158 15-87 (269)
439 PLN02496 probable phosphopanto 39.2 73 0.0016 22.4 4.2 34 4-39 19-52 (209)
440 PF03054 tRNA_Me_trans: tRNA m 39.1 1.4E+02 0.003 23.0 6.0 96 5-129 1-126 (356)
441 cd01538 PBP1_ABC_xylose_bindin 39.1 1.5E+02 0.0031 21.4 7.8 72 81-158 15-88 (288)
442 PF02602 HEM4: Uroporphyrinoge 39.0 75 0.0016 22.1 4.4 77 84-160 129-224 (231)
443 PLN02958 diacylglycerol kinase 38.8 2.1E+02 0.0045 23.0 11.9 69 84-158 132-207 (481)
444 cd06319 PBP1_ABC_sugar_binding 38.7 1.4E+02 0.003 21.1 7.9 71 81-157 15-87 (277)
445 PRK05835 fructose-bisphosphate 38.7 1.5E+02 0.0033 22.3 6.0 72 89-160 10-84 (307)
446 TIGR00421 ubiX_pad polyprenyl 38.6 48 0.001 22.7 3.2 33 6-39 1-33 (181)
447 cd06309 PBP1_YtfQ_like Peripla 38.6 1.4E+02 0.0031 21.1 8.0 72 81-158 15-88 (273)
448 PRK09722 allulose-6-phosphate 38.5 1.5E+02 0.0032 21.2 6.1 44 86-131 99-142 (229)
449 cd06296 PBP1_CatR_like Ligand- 38.5 1.4E+02 0.003 21.0 8.2 69 81-157 15-85 (270)
450 PRK00856 pyrB aspartate carbam 38.4 1.7E+02 0.0037 21.9 9.9 43 105-156 87-129 (305)
451 PF05902 4_1_CTD: 4.1 protein 38.2 79 0.0017 19.9 3.8 34 4-37 70-103 (114)
452 cd06301 PBP1_rhizopine_binding 38.2 1.4E+02 0.0031 21.0 7.6 72 81-158 15-89 (272)
453 PRK03670 competence damage-ind 38.2 1.6E+02 0.0034 21.4 6.8 45 82-126 20-67 (252)
454 PF01220 DHquinase_II: Dehydro 38.1 1.2E+02 0.0025 20.0 7.3 74 77-157 24-99 (140)
455 PRK12738 kbaY tagatose-bisphos 38.1 1.7E+02 0.0036 21.8 7.7 74 82-155 115-207 (286)
456 PF00180 Iso_dh: Isocitrate/is 38.0 1.3E+02 0.0029 22.9 5.8 25 16-40 161-186 (348)
457 PTZ00408 NAD-dependent deacety 37.9 1.4E+02 0.003 21.5 5.6 47 107-160 162-209 (242)
458 PRK00772 3-isopropylmalate deh 37.8 1.9E+02 0.0041 22.3 7.7 24 16-39 167-190 (358)
459 CHL00073 chlN photochlorophyll 37.8 79 0.0017 25.2 4.7 27 105-131 113-140 (457)
460 TIGR03590 PseG pseudaminic aci 37.8 1.6E+02 0.0035 21.5 9.6 99 3-157 169-267 (279)
461 PF13500 AAA_26: AAA domain; P 37.7 41 0.00088 23.0 2.9 38 6-43 2-40 (199)
462 cd00886 MogA_MoaB MogA_MoaB fa 37.4 1.1E+02 0.0024 20.0 4.8 41 86-126 24-68 (152)
463 COG2876 AroA 3-deoxy-D-arabino 37.4 1.7E+02 0.0036 21.7 5.8 87 12-129 52-138 (286)
464 KOG3123 Diphthine synthase [Tr 37.4 47 0.001 23.5 3.0 47 106-160 64-113 (272)
465 COG1349 GlpR Transcriptional r 37.3 1.3E+02 0.0029 21.6 5.5 56 108-163 153-213 (253)
466 KOG0781 Signal recognition par 37.3 79 0.0017 25.5 4.5 43 106-149 453-495 (587)
467 cd00840 MPP_Mre11_N Mre11 nucl 37.3 62 0.0013 22.2 3.8 24 81-106 27-50 (223)
468 PF01993 MTD: methylene-5,6,7, 37.1 35 0.00075 24.7 2.4 48 109-160 49-96 (276)
469 cd06284 PBP1_LacI_like_6 Ligan 37.1 1.4E+02 0.0031 20.8 8.2 68 81-157 15-84 (267)
470 COG4122 Predicted O-methyltran 37.0 1.5E+02 0.0033 21.0 6.6 49 80-129 93-142 (219)
471 PF13407 Peripla_BP_4: Peripla 36.9 1.5E+02 0.0032 20.8 8.1 73 81-159 14-89 (257)
472 PRK07565 dihydroorotate dehydr 36.8 1.8E+02 0.004 21.9 7.8 75 82-156 88-171 (334)
473 smart00493 TOPRIM topoisomeras 36.8 65 0.0014 17.9 3.2 25 5-29 48-72 (76)
474 PF10649 DUF2478: Protein of u 36.8 68 0.0015 21.5 3.6 48 108-156 82-129 (159)
475 KOG1466 Translation initiation 36.8 1.7E+02 0.0038 21.6 6.5 65 87-158 173-240 (313)
476 PF03193 DUF258: Protein of un 36.7 1E+02 0.0022 20.7 4.4 45 85-131 2-47 (161)
477 cd01967 Nitrogenase_MoFe_alpha 36.6 85 0.0018 24.2 4.7 27 105-131 103-130 (406)
478 PF00994 MoCF_biosynth: Probab 36.4 97 0.0021 19.9 4.4 45 82-126 17-63 (144)
479 cd01542 PBP1_TreR_like Ligand- 36.1 1.5E+02 0.0032 20.6 8.2 70 81-158 15-86 (259)
480 COG1197 Mfd Transcription-repa 36.0 3.3E+02 0.0072 24.7 8.2 48 81-129 657-706 (1139)
481 TIGR03679 arCOG00187 arCOG0018 35.9 1.5E+02 0.0034 20.8 9.3 47 84-131 101-147 (218)
482 PF02302 PTS_IIB: PTS system, 35.9 89 0.0019 18.0 4.2 41 84-129 17-57 (90)
483 COG1737 RpiR Transcriptional r 35.9 61 0.0013 23.7 3.7 44 3-47 176-219 (281)
484 cd06277 PBP1_LacI_like_1 Ligan 35.9 1.5E+02 0.0034 20.8 8.0 69 81-158 18-88 (268)
485 PRK15408 autoinducer 2-binding 35.8 1.9E+02 0.0041 21.8 6.8 72 81-158 39-113 (336)
486 cd06267 PBP1_LacI_sugar_bindin 35.8 1.5E+02 0.0032 20.5 7.9 70 81-158 15-86 (264)
487 cd01422 MGS Methylglyoxal synt 35.4 1.1E+02 0.0024 19.0 6.0 34 94-128 44-79 (115)
488 TIGR01768 GGGP-family geranylg 35.3 1.3E+02 0.0028 21.4 5.0 50 108-160 16-65 (223)
489 cd03146 GAT1_Peptidase_E Type 35.3 1.5E+02 0.0033 20.6 8.0 42 82-127 46-88 (212)
490 PF06258 Mito_fiss_Elm1: Mitoc 35.0 1.9E+02 0.0042 21.6 8.0 39 20-58 68-106 (311)
491 cd06362 PBP1_mGluR Ligand bind 35.0 2.2E+02 0.0047 22.2 10.2 24 106-129 241-266 (452)
492 PRK03673 hypothetical protein; 35.0 2.2E+02 0.0048 22.3 7.2 69 82-154 21-91 (396)
493 PF00455 DeoRC: DeoR C termina 34.9 70 0.0015 21.2 3.6 56 108-163 81-141 (161)
494 PF00532 Peripla_BP_1: Peripla 34.9 1.8E+02 0.0038 21.1 8.1 71 81-159 17-88 (279)
495 PRK12289 GTPase RsgA; Reviewed 34.9 2.1E+02 0.0045 22.0 10.4 41 89-131 143-184 (352)
496 cd05710 SIS_1 A subgroup of th 34.8 94 0.002 19.3 4.0 41 4-45 47-87 (120)
497 TIGR01858 tag_bisphos_ald clas 34.8 1.9E+02 0.0041 21.4 6.9 74 82-155 113-205 (282)
498 PF00885 DMRL_synthase: 6,7-di 34.7 1.3E+02 0.0029 19.7 5.8 74 81-154 19-103 (144)
499 PF01791 DeoC: DeoC/LacD famil 34.7 1.7E+02 0.0036 20.7 6.1 76 81-157 111-200 (236)
500 PLN00118 isocitrate dehydrogen 34.6 1.2E+02 0.0026 23.5 5.0 25 15-39 184-209 (372)
No 1
>PRK15005 universal stress protein F; Provisional
Probab=99.96 E-value=8.4e-28 Score=158.08 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=106.6
Q ss_pred CCceEEEEeCCCcc--HHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 3 GDRKIGVALDFSPS--SKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 3 ~~~~iLv~vd~s~~--~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++||+|+|+|+. +..|+++|.++|+..+++++++||++...... ..+ ........ .. +...+..
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~------~~~--~~~~~~~~---~~-~~~~~~~ 68 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYA------SLG--LAYSAELP---AM-DDLKAEA 68 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccc------ccc--ccccccch---HH-HHHHHHH
Confidence 37999999999998 57999999999999999999999998653211 000 00000000 00 1112222
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+.++.+.+.+...+.++++.+..|++.+.|++++++.++||||||+++ +++.++++||++++++++++||||+||
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 69 KSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchHHHHHHhCCCCEEEeC
Confidence 3445555555555567788889999999999999999999999999884 568888999999999999999999996
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.96 E-value=1.2e-27 Score=157.08 Aligned_cols=140 Identities=23% Similarity=0.265 Sum_probs=106.0
Q ss_pred CCceEEEEeCCCc--cHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 3 GDRKIGVALDFSP--SSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 3 ~~~~iLv~vd~s~--~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++||||+|+|+ .+..|+++|..+|+.. ++++++||++...... . .. ... .. ........+..
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~----~--~~----~~~--~~-~~~~~~~~~~~ 66 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLS----L--HR----FAA--DV-RRFEEHLQHEA 66 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCccccc----c--cc----ccc--ch-hhHHHHHHHHH
Confidence 3799999999995 8999999999999875 6999999997653110 0 00 000 00 11111222333
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
++.++.+.+.+...+.++++.+..|++.+.|++++++.++||||||+++++ +.++++||++++++++++|||||||
T Consensus 67 ~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 67 EERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 455555555555456788899999999999999999999999999999976 6778899999999999999999996
No 3
>PRK09982 universal stress protein UspD; Provisional
Probab=99.95 E-value=3.4e-27 Score=154.92 Aligned_cols=141 Identities=19% Similarity=0.196 Sum_probs=104.1
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+|+.+..|+++|+.+|+..+++++++||.+....... .. ..+.. +.......+...
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~-~~-------~~~~~-----~~~~~~~~~~~~ 67 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP-GI-------YFPAT-----EDILQLLKNKSD 67 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch-hh-------hccch-----HHHHHHHHHHHH
Confidence 349999999999999999999999999999999999999876531100 00 00000 011111122223
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.++.+.+.+. ...++..+..|++.+.|+++|++.++||||||++ ++++.+++ + ++++++++++|||||||...
T Consensus 68 ~~l~~~~~~~~--~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 68 NKLYKLTKNIQ--WPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMSADLLIVPFID 141 (142)
T ss_pred HHHHHHHHhcC--CCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCCCCEEEecCCC
Confidence 44444444443 2357777888999999999999999999999986 77777776 5 99999999999999999754
No 4
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.95 E-value=1.2e-26 Score=152.89 Aligned_cols=141 Identities=24% Similarity=0.326 Sum_probs=112.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+||||+|+|+.+..|++||+.+++..+++++++||.++..... ... ... ...........+..++.++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~------~~~--~~~----~~~~~~~~~~~~~~~~~l~ 68 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIP------SSS--GKL----EVASAYKQEEDKEAKELLL 68 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCC------CCc--cch----HHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999987643211 000 000 0011122222344566777
Q ss_pred HHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhccc-chhHHHhhcCC--ccEEEEeC
Q 031195 86 LLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILG-SVSNYVMTHAP--CPVTIVKD 158 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~-s~~~~i~~~~~--~pVliv~~ 158 (164)
++.+.+...++.+++.+..| ++.+.|++++++.++|+||||+++++++.++++| |++.+++++++ ||||||++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 69 PYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred HHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 77777777788999888886 8999999999999999999999999999888887 69999999999 99999985
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.94 E-value=3.4e-26 Score=150.52 Aligned_cols=140 Identities=21% Similarity=0.212 Sum_probs=99.6
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+|+.+..|+++|..+|+.+++++++|||....... +. +. .. . .. .+...+..+
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-----~~--~~--~~-~--~~----~~~~~~~~~ 64 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL-----YT--GL--ID-V--NL----GDMQKRISE 64 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh-----hh--hh--hh-c--ch----HHHHHHHHH
Confidence 4599999999999999999999999999999999999994332111 00 00 00 0 00 000111112
Q ss_pred HHHHHHHHHhhhcCCceE-EEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 82 DALDLLDTASRQKEANIV-AKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
...+.+.+.....|+... ..+..|++.++|+++|++.++||||||+++ +.+. . +||++++++++++||||+||.+.
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~-~-lgSva~~v~~~a~~pVLvv~~~~ 141 (144)
T PRK15118 65 ETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWS-K-LMSSARQLINTVHVDMLIVPLRD 141 (144)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHH-H-HHHHHHHHHhhCCCCEEEecCCc
Confidence 333344444555677654 445579999999999999999999999996 3333 3 57999999999999999999654
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.93 E-value=3.6e-25 Score=145.21 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=103.9
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++|||++|+++.+..++++|+.+|+.++++++++|+.+...... .. .. ....+......+
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~------~~-------~~----~~~~~~~~~~~~ 63 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN------QF-------AA----PMLEDLRSVMQE 63 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch------hh-------hH----HHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999987643110 00 00 001111111112
Q ss_pred HHHHHHHHHhhhcCCceE-EEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 82 DALDLLDTASRQKEANIV-AKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+..+.+.+.....|+... ..+..|++.+.|++++++.++||||+|+++.+++.+++ |++++++++++|||||||...
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 64 ETQSFLDKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCCCEEEEeCCC
Confidence 233334444455566654 45667999999999999999999999999998887754 789999999999999999653
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.93 E-value=3.1e-25 Score=144.09 Aligned_cols=140 Identities=29% Similarity=0.397 Sum_probs=104.6
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|+++||||+|+++.+..++++|+.+|+..+++|+++||.+.......... ...............
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 65 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAA---------------EDEESEEEAEEEEQA 65 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccc---------------cccccccccchhhhh
Confidence 47999999999999999999999999999999999999999864321100 000000000000000
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
............+......+..|++.++|++++++.++|+||||+++.+++.++++||++++++++++|||+|||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 66 RQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred hhHHHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 000001223333556667777799999999999999999999999999999999999999999999999999997
No 8
>PRK11175 universal stress protein UspE; Provisional
Probab=99.93 E-value=9.2e-25 Score=159.96 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=113.1
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|++++||||+|+|+.+..|+++|+++|+..+++++++|+.+....... +. .. ............+..+
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~-------~~-~~----~~~~~~~~~~~~~~~~ 68 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMT-------TL-LS----PDEREAMRQGVISQRT 68 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhh-------cc-cc----hhHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999999999998765432110 00 00 0000011111112234
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.++.+.+.+...|+.++..+.+ |++.++|.+++++.++||||+|+++.+++.+.++||++++++++++||||++|+..
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~ 148 (305)
T PRK11175 69 AWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQD 148 (305)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecccc
Confidence 55666666666678888887774 89999999999999999999999999999999999999999999999999999753
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.92 E-value=3.7e-24 Score=138.53 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=110.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+||||+|+++.+..++++|.++|+..+++++++|+.+...... . .. .....+..++.++
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~--------------~-~~------~~~~~~~~~~~~~ 59 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS--------------P-SQ------LEVNVQRARKLLR 59 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC--------------c-ch------hHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999998764211 0 00 0011233467778
Q ss_pred HHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+.+.+...|+.++..+.. |++.++|.++++++++|+||||+++.+++.+.++||++++++++++|||+++|
T Consensus 60 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 60 QAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 8888888889998887765 79999999999999999999999999988888999999999999999999986
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.91 E-value=2e-23 Score=133.97 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=102.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+||||+|+++.+..++++|+.+|+..+++++++||.++... . ..+..++.++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~---------------~-------------~~~~~~~~l~ 52 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN---------------R-------------LSEAERRRLA 52 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc---------------c-------------CCHHHHHHHH
Confidence 69999999999999999999999999999999999876421 0 0112245566
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVK 157 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~ 157 (164)
.+.+.+.+.++.+. .+..|++.+.|.++++++++|+||||+++++.+.++++||+++++++++ +|||+|++
T Consensus 53 ~~~~~~~~~~~~~~-~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 53 EALRLAEELGAEVV-TLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred HHHHHHHHcCCEEE-EEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 66777766666443 2345689999999999999999999999999999999999999999999 99999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.89 E-value=3.7e-22 Score=146.22 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=106.9
Q ss_pred CCceEEEEeCCCccH-------HHHHHHHHHhcCCC-CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHh
Q 031195 3 GDRKIGVALDFSPSS-------KFALSWAVNNLLDK-GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEK 74 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~-------~~al~~a~~la~~~-~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (164)
.+++||+|+|+++.+ ..++++|..+|+.. +++++++|+.+...... ..+ .+... .+...+
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~------~~~---~~~~~--~~~~~~- 218 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINI------AIE---LPEFD--PSVYND- 218 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhc------ccc---ccccc--hhhHHH-
Confidence 368999999998753 67999999999998 99999999987653210 000 00000 001111
Q ss_pred hcccchHHHHHHHHHHhhhcCCce-EEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccE
Q 031195 75 YNVKTDIDALDLLDTASRQKEANI-VAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPV 153 (164)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pV 153 (164)
...+...+.+.++....++.. ...+..|++.+.|.+++++.++||||||+++++++.++++||++++++++++|||
T Consensus 219 ---~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pV 295 (305)
T PRK11175 219 ---AIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDL 295 (305)
T ss_pred ---HHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCE
Confidence 111223334445555556654 4566779999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 031195 154 TIVKDPSFG 162 (164)
Q Consensus 154 liv~~~~~~ 162 (164)
|+||+..+.
T Consensus 296 Lvv~~~~~~ 304 (305)
T PRK11175 296 LAIKPDGYV 304 (305)
T ss_pred EEEcCCCCC
Confidence 999987764
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.86 E-value=1.1e-20 Score=121.20 Aligned_cols=130 Identities=35% Similarity=0.505 Sum_probs=108.3
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+||||+|+++.+..++++|..+|+..+++++++|+.+...... . ..........++.++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~--------------~-------~~~~~~~~~~~~~l~ 59 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA--------------A-------ELAELLEEEARALLE 59 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc--------------h-------hHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999987754210 0 011111223356667
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+...+...+++++..+..|++.++|.+++++.++|+||+|+++.+.+.+.++|+++.+++++++|||+++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 60 ALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 77776667789999988889889999999999999999999999998888899999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-19 Score=119.58 Aligned_cols=148 Identities=27% Similarity=0.295 Sum_probs=116.6
Q ss_pred CCCceEEEEeC-CCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 2 AGDRKIGVALD-FSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 2 ~~~~~iLv~vd-~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
.++++|++++| +++.+..+++.+..++...+..+.++++.+........... ..... ............
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~ 72 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVA------LADAP----IPLSEEELEEEA 72 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccc------cccch----hhhhHHHHHHHH
Confidence 46899999999 99999999999999999999999999998777532211000 00000 001111122333
Q ss_pred HHHHHHHHHHhhhcCCc-eEEEEecCCh-hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEAN-IVAKIYWGDA-RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~-~~~~~~~g~~-~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+.+.+.....++. ++..+..|++ .+.|.+++.+.++|+||||+++++++.++++||++++++++++|||+++|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~~ 152 (154)
T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVRS 152 (154)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEcc
Confidence 67777788888888888 5888899988 799999999999999999999999999999999999999999999999997
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 153 ~ 153 (154)
T COG0589 153 E 153 (154)
T ss_pred C
Confidence 5
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.74 E-value=8.3e-17 Score=119.06 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=91.0
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCC--CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhccc
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDK--GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVK 78 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|++|+|||||+|+|+.+.+|+++|+++|+.. +++|++|||.+...... . . ... .+
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~--------------~----~-~~~----~~ 58 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP--------------E----G-QDE----LA 58 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc--------------c----h-hHH----HH
Confidence 6789999999999999999999999999984 69999999998643110 0 0 001 11
Q ss_pred chHHHHHHHHHHhhh------cCCceEEEEec--------CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHH
Q 031195 79 TDIDALDLLDTASRQ------KEANIVAKIYW--------GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNY 144 (164)
Q Consensus 79 ~~~~~l~~~~~~~~~------~~~~~~~~~~~--------g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~ 144 (164)
..++.++++.+.+.. .|+++++.+.. |++++.|+++|++.++|+||||..-..+..--++.+ .+.
T Consensus 59 ~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~-~~~ 137 (357)
T PRK12652 59 AAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQP-LER 137 (357)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccch-HHH
Confidence 123445555554443 58888888865 899999999999999999999965433222223332 344
Q ss_pred HhhcCCccEEEE
Q 031195 145 VMTHAPCPVTIV 156 (164)
Q Consensus 145 i~~~~~~pVliv 156 (164)
-+.++.+.+=..
T Consensus 138 ~~~~~~~~~~~~ 149 (357)
T PRK12652 138 ELARAGITYEEA 149 (357)
T ss_pred HHHhcCCceecC
Confidence 445555544433
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.51 E-value=5.4e-13 Score=110.06 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=98.7
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
-.+||||+++++.+..+++.|.++|...++.++++||..+..... ..+.....
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~---------------------------~~~~~~~l 302 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL---------------------------PEKKRRAI 302 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC---------------------------CHHHHHHH
Confidence 468999999999999999999999999999999999986642110 00111233
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC-ccEEEEeCC
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP-CPVTIVKDP 159 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~-~pVliv~~~ 159 (164)
++.+ +.+++.|.++.. +..++++++|++||++++++.||||.++++++ ++.||+++++++.++ .+|.||+..
T Consensus 303 ~~~~-~lA~~lGa~~~~-~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 303 LSAL-RLAQELGAETAT-LSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred HHHH-HHHHHcCCEEEE-EeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 3333 578888888443 34458999999999999999999999888765 456899999999998 999999744
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.47 E-value=1.3e-12 Score=103.44 Aligned_cols=127 Identities=20% Similarity=0.221 Sum_probs=109.9
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
.+||||+++++.+...+++|.++|...++++++|||..+..... .+.....+
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~----------------------------~~~~~~~l 300 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL----------------------------SEKEARRL 300 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc----------------------------cHHHHHHH
Confidence 68999999999999999999999999999999999988764221 12235777
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC-ccEEEEeCCC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP-CPVTIVKDPS 160 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~-~pVliv~~~~ 160 (164)
....+.+++.|.++.+ +..+++.++|.+||+.+++.-||+|.+.++.|+.++.++++.++++..+ ..|.|++.+.
T Consensus 301 ~~~~~Lae~lGae~~~-l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~ 376 (890)
T COG2205 301 HENLRLAEELGAEIVT-LYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDA 376 (890)
T ss_pred HHHHHHHHHhCCeEEE-EeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCC
Confidence 8888888888887775 3336999999999999999999999999999999999999999999998 9999998644
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.66 E-value=1.5e-07 Score=56.18 Aligned_cols=84 Identities=19% Similarity=0.101 Sum_probs=70.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDL 86 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (164)
|+++++++..|..++.++.+.+ ..+..+.++++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 5899999999999999999876 556677777763
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhccc-chhHHHhhcCCccEEE
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILG-SVSNYVMTHAPCPVTI 155 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~-s~~~~i~~~~~~pVli 155 (164)
...+.+.+.+++.++|+|++|.+.....+..+.+ ++...+++.++|||+.
T Consensus 35 -------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 -------------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred -------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 5667777888889999999999988877777777 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=98.24 E-value=4e-05 Score=63.56 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=89.8
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCC--CCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcch-hhhHhhcccchH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLD--KGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREP-ETMEKYNVKTDI 81 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (164)
-|||+|+...++....+..+-..... ..-.++++|+++-.....+- . ..++.... ....+......+
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~--l--------~~h~~~~~~~~~~~~~~~~~~ 528 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAM--L--------IVHNTRKSGRPALNRTQAQSD 528 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccc--e--------eeeeccccccccccccccccc
Confidence 48999999999888877765543222 34589999998866432210 0 00000000 000000011123
Q ss_pred HHHHHHHHHhhhc-CCceEEEE---ecCChhHHHHHHHhhCCCCEEEEeccCCcccch------hcccchhHHHhhcCCc
Q 031195 82 DALDLLDTASRQK-EANIVAKI---YWGDARERLLEAIEDLKLDSLVMGSRGLGTVRR------IILGSVSNYVMTHAPC 151 (164)
Q Consensus 82 ~~l~~~~~~~~~~-~~~~~~~~---~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~------~~~~s~~~~i~~~~~~ 151 (164)
+..+.++...+.. ++.++... -..+..+.|+..|.+.++++|+++.|++....+ -.++.+..++++++||
T Consensus 529 ~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApC 608 (832)
T PLN03159 529 HIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPC 608 (832)
T ss_pred HHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCC
Confidence 5555555544332 45555433 224899999999999999999999987644332 2456678999999999
Q ss_pred cEEEEeCCC
Q 031195 152 PVTIVKDPS 160 (164)
Q Consensus 152 pVliv~~~~ 160 (164)
+|-|.=++.
T Consensus 609 sVgIlVDRg 617 (832)
T PLN03159 609 SVGILVDRG 617 (832)
T ss_pred CEEEEEeCC
Confidence 999886554
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.65 E-value=0.0013 Score=45.02 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=68.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+|+|+++|...|..++..+..+++..+.++.++|+....... .....+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~--------------------------------~~~~~~ 48 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPE--------------------------------SDEEAE 48 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChh--------------------------------HHHHHH
Confidence 589999999999999988888776677789999986553210 123456
Q ss_pred HHHHHhhhcCCceEEEEec-C--------Chh--------HHHHHHHhhCCCCEEEEeccCCc
Q 031195 86 LLDTASRQKEANIVAKIYW-G--------DAR--------ERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-g--------~~~--------~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+.+.+...|+++...... . +.. ..+.+.+++++++.|++|.+..-
T Consensus 49 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 49 FVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 6777777778876654332 1 122 57788899999999999987543
No 20
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.58 E-value=0.0032 Score=42.93 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=64.1
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+|+|++.|...|..++..+..+....+.++.++||....... .....+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~--------------------------------s~~~~~ 48 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREE--------------------------------SDEEAE 48 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCC--------------------------------HHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--------------------------------cchhHH
Confidence 699999999999999999999988888899999997665311 134557
Q ss_pred HHHHHhhhcCCceEEEEec-----C-Ch--------hHHHHHHHhhCCCCEEEEeccCC
Q 031195 86 LLDTASRQKEANIVAKIYW-----G-DA--------RERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-----g-~~--------~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
.+.+.+...|+++...... + +. .+.+.+.|.+++++.|++|.+..
T Consensus 49 ~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 49 FVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp HHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred HHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 7888888888877764433 1 11 35677889999999999997753
No 21
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.54 E-value=0.0021 Score=53.62 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=80.9
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhh-hhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRN-LMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.++|.+..-|.++++.|+.+|.++|++.+.++++++..+........ .....+..+..+...... ..+.+.+.+
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~e~~~D~~ 704 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDG-----KKERQLDEE 704 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccc-----hhHHHHHHH
Confidence 45899999999999999999999999999999999998654321100 000000000001000000 111223456
Q ss_pred HHHHHHHHhhh-cCCceEEEEec-C-ChhHHHHHHHhhCCCCEEEEeccCCc------ccchh----cccchhHHHhh--
Q 031195 83 ALDLLDTASRQ-KEANIVAKIYW-G-DARERLLEAIEDLKLDSLVMGSRGLG------TVRRI----ILGSVSNYVMT-- 147 (164)
Q Consensus 83 ~l~~~~~~~~~-~~~~~~~~~~~-g-~~~~~I~~~a~~~~~dlivlg~~~~~------~~~~~----~~~s~~~~i~~-- 147 (164)
.++++...... ..+.+.-+++. | +....|....+ ++||+|+|+++.. ++.++ =+|.+.+-+..
T Consensus 705 ~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~--~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d 782 (832)
T PLN03159 705 YINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDS--AHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSD 782 (832)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhc--cCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCC
Confidence 66666665532 23444444443 3 23344444333 4999999975321 11111 13444443333
Q ss_pred -cCCccEEEEeCC
Q 031195 148 -HAPCPVTIVKDP 159 (164)
Q Consensus 148 -~~~~pVliv~~~ 159 (164)
.++..||||+..
T Consensus 783 ~~~~~SVLVvQQ~ 795 (832)
T PLN03159 783 FAATVSVLVVQQY 795 (832)
T ss_pred CCCceeEEEEEee
Confidence 235789999764
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.34 E-value=0.0056 Score=41.61 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=67.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+|+|+++|...|.-++..+.......+.++.++|+....... ..+..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~--------------------------------~~~~~~ 48 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPE--------------------------------SDEEAA 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCch--------------------------------HHHHHH
Confidence 589999999999998988888776667889999986543210 135566
Q ss_pred HHHHHhhhcCCceEEEEec---CCh-----------hHHHHHHHhhCCCCEEEEeccCCc
Q 031195 86 LLDTASRQKEANIVAKIYW---GDA-----------RERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~---g~~-----------~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+.+.+...|+++...... +.. ...+.++|++++++.|+.|.+...
T Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 49 FVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 7777888888877754111 111 256778899999999999987543
No 23
>PRK12342 hypothetical protein; Provisional
Probab=96.88 E-value=0.012 Score=42.21 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=66.1
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
-.++++..|++.|+++. ..+.+|+++++-++.... ...+.......
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~~---------------------------------~~l~r~alamG 77 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQN---------------------------------SKVRKDVLSRG 77 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHhH---------------------------------HHHHHHHHHcC
Confidence 35678999999999998 678999999987764210 12334444444
Q ss_pred hhcCCceEEEEecC-Ch---hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccE
Q 031195 92 RQKEANIVAKIYWG-DA---RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPV 153 (164)
Q Consensus 92 ~~~~~~~~~~~~~g-~~---~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pV 153 (164)
.+.++.++-....| |+ +..+-.+++..++|||+.|....-+.. |.+.-.+....+.|.
T Consensus 78 aD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~t----gqvg~~lA~~Lg~P~ 139 (254)
T PRK12342 78 PHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYA----QQVGLLLGELLQLPV 139 (254)
T ss_pred CCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCC----CCHHHHHHHHhCCCc
Confidence 45555554333334 55 788888888889999999965433322 333444444444443
No 24
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=96.83 E-value=0.017 Score=41.52 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred EeCCCccHHHHHHHHHHhcC-CCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHH
Q 031195 10 ALDFSPSSKFALSWAVNNLL-DKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLD 88 (164)
Q Consensus 10 ~vd~s~~~~~al~~a~~la~-~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (164)
+...++.+..|++.|++|.. ..+.+++++++-++.. +..+..+.
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------------------------~~~lr~aL 76 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------------------------EEALREAL 76 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------------------------HHHHHHHH
Confidence 33456789999999999999 5999999999977653 34444444
Q ss_pred HHhhhcCCceEEEEecC----ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 89 TASRQKEANIVAKIYWG----DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g----~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
....+..+.++.....+ ..+..|-..++..+.|||++|.....+- .|.+...+....+.|.+
T Consensus 77 AmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~----t~qvg~~lAe~Lg~P~~ 142 (260)
T COG2086 77 AMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGD----TGQVGPLLAELLGWPQV 142 (260)
T ss_pred hcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCC----ccchHHHHHHHhCCcee
Confidence 44445555555333333 3478888889999999999996543222 23344444445555544
No 25
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=96.70 E-value=0.012 Score=42.29 Aligned_cols=87 Identities=9% Similarity=0.049 Sum_probs=59.2
Q ss_pred CCCccHHHHHHHHHHhcCCCC-CeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHH
Q 031195 12 DFSPSSKFALSWAVNNLLDKG-DTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTA 90 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~-~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (164)
-.++++..|++.|+++..+.+ .+|+++.+-+..... ...+++....
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~---------------------------------~~~lr~aLAm 79 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTN---------------------------------AKGRKDVLSR 79 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhh---------------------------------HHHHHHHHHc
Confidence 356789999999999988764 899999987765210 2344444445
Q ss_pred hhhcCCceEEEEecC-C---hhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 91 SRQKEANIVAKIYWG-D---ARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 91 ~~~~~~~~~~~~~~g-~---~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..+.++.++.....| | .+..|-.+++..++|||+.|....-
T Consensus 80 GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D 124 (256)
T PRK03359 80 GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSD 124 (256)
T ss_pred CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCcccc
Confidence 555555554332223 3 3777888888889999999975543
No 26
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=96.57 E-value=0.059 Score=36.49 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCC--CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDK--GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+|+|+++|...|..++..+..+.... +..++++|+....... ....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~--------------------------------~~~~ 48 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGY--------------------------------RDES 48 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCC--------------------------------cHHH
Confidence 58999999999998888877766554 6688899986553210 0233
Q ss_pred HHHHHHHhhhcCCceEEEEec-------------C---------ChhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-------------G---------DARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-------------g---------~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.+++.+...|+.+...... + -....+.+.+++++++.|+.|.+.
T Consensus 49 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 49 LEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred HHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 345556666666665543221 0 013566778999999999999774
No 27
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.02 E-value=0.16 Score=35.13 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=62.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDL 86 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (164)
++|.-.|....-.+.+.|.++... +.++.++...... -...++
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R------------------------------------~ga~eQ 47 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYR------------------------------------IGAVEQ 47 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSS------------------------------------THHHHH
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCC------------------------------------ccHHHH
Confidence 456667777788899999998877 8889888864443 356677
Q ss_pred HHHHhhhcCCceEEEEecCChhHH---HHHHHhhCCCCEEEEeccCCcccch
Q 031195 87 LDTASRQKEANIVAKIYWGDARER---LLEAIEDLKLDSLVMGSRGLGTVRR 135 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~---I~~~a~~~~~dlivlg~~~~~~~~~ 135 (164)
++..++..++++...-...++.+. .++..+..++|+|++.+.|++....
T Consensus 48 L~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~ 99 (196)
T PF00448_consen 48 LKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDE 99 (196)
T ss_dssp HHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHH
T ss_pred HHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhH
Confidence 888888877776652222345443 4555666789999999998876553
No 28
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=0.17 Score=37.13 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=61.0
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
.+|+|+++|...|..++..+..+... ..+.++||.......+ ....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~~--------------------------------~~~~ 67 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGYS--------------------------------DQEA 67 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCcc--------------------------------chHH
Confidence 69999999999999888877776655 8899999977653110 2333
Q ss_pred HHHHHHhhhcCCceEEE---EecC-C------h--------hHHHHHHHhhCCCCEEEEeccCCc
Q 031195 85 DLLDTASRQKEANIVAK---IYWG-D------A--------RERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~---~~~g-~------~--------~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+.....+...++..... ...+ . + ...+-+.|.+.++|.|++|.+..-
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD 132 (298)
T COG0037 68 ELVEKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDD 132 (298)
T ss_pred HHHHHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHH
Confidence 44455555555422211 1111 0 1 345667799999999999987644
No 29
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=95.83 E-value=0.081 Score=35.30 Aligned_cols=89 Identities=25% Similarity=0.187 Sum_probs=58.1
Q ss_pred eEEEEeCCC-----ccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 6 KIGVALDFS-----PSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 6 ~iLv~vd~s-----~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
+|||-.+.. +.+..++..|.+++...+.+++++.+-+...
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~----------------------------------- 45 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEE----------------------------------- 45 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC-----------------------------------
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchh-----------------------------------
Confidence 466666543 5688999999999999999999998873221
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--------ChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--------DARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--------~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..+.+++.+...|..--+.+... ...+.|.+.+++.++|+|++|....+
T Consensus 46 --~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g 102 (164)
T PF01012_consen 46 --AAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFG 102 (164)
T ss_dssp --HHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHH
T ss_pred --hHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCC
Confidence 22334444555555433333221 24668888899999999999966443
No 30
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=95.66 E-value=0.25 Score=35.66 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=60.2
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCC--CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDK--GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
-++|+|+++|...|..++..+..+.+.. +-++..+|+...... +. .
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~-------------------~~-------------~ 76 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG-------------------FP-------------E 76 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC-------------------CC-------------H
Confidence 4689999999999998888777765543 347888887543210 00 1
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-----------CC---------hhHHHHHHHhhCCCCEEEEeccCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-----------GD---------ARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-----------g~---------~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
+ .+.+.|.+.|+++...-.. +. -...+.++|++.++|.|++|.+..
T Consensus 77 ~---~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 77 H---VLPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred H---HHHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 1 2356677777766543221 11 124566779999999999997754
No 31
>PRK13820 argininosuccinate synthase; Provisional
Probab=95.63 E-value=0.36 Score=37.09 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCC-eEEEEEEecC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGD-TLYIIHINPN 43 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~-~l~ll~v~~~ 43 (164)
++++|+|+++|.-.|.-++.++.+ .++. +++.+|+...
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd~g 39 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVDVG 39 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEECC
Confidence 358999999999888877777643 3465 8999998654
No 32
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=94.96 E-value=0.49 Score=35.04 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=63.0
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.++++++.+...|.-++..+.+.....+..+.+||+.....+. +.
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~Fp----------------------------------Et 72 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFP----------------------------------EM 72 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCH----------------------------------HH
Confidence 57899999999999988888877554445678899987665321 23
Q ss_pred HHHHHHHhhhcCCceEEEEe-----cC------C--------hhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 84 LDLLDTASRQKEANIVAKIY-----WG------D--------ARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~-----~g------~--------~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+...+.+...|+++..... .| + -...+.++++++++|.++.|.+..-
T Consensus 73 ~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 73 IEFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred HHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 33344455555666554321 11 0 1356778888899999999987643
No 33
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.56 E-value=0.49 Score=37.07 Aligned_cols=91 Identities=14% Similarity=0.024 Sum_probs=63.9
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....||..|+..|...+..|.+|++.++..... .........+.+..+.+.+
T Consensus 32 DLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~------------------------~~~r~~Fl~esL~~L~~~L 87 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAA------------------------TRRHYFFMLGGLDEVANEC 87 (454)
T ss_pred chhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccc------------------------cHHHHHHHHHHHHHHHHHH
Confidence 3333456788888877665667899999988753210 0111223356677777777
Q ss_pred hhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 92 RQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 92 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
++.|+... +..|++.+.|.+.+++.+++.|+....
T Consensus 88 ~~~g~~L~--v~~g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 88 ERLIIPFH--LLDGPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHcCCceE--EeecChHHHHHHHHHHcCCCEEEEecc
Confidence 77776664 567999999999999999999999764
No 34
>PLN00200 argininosuccinate synthase; Provisional
Probab=94.51 E-value=1.5 Score=33.85 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=29.5
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+++|+|+++|.-.|.-++.++.+ ..+..++.+++...
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 357999999999888877777654 24678999998655
No 35
>PRK10867 signal recognition particle protein; Provisional
Probab=94.39 E-value=1.1 Score=35.04 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=57.1
Q ss_pred EEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHH
Q 031195 8 GVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLL 87 (164)
Q Consensus 8 Lv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (164)
++...|+..+-.+...|..+++..+.++.++......+ ...+++
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~------------------------------------aa~eQL 148 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP------------------------------------AAIEQL 148 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch------------------------------------HHHHHH
Confidence 33445555677888888887766577787777644331 334555
Q ss_pred HHHhhhcCCceEEEEecCChh---HHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 88 DTASRQKEANIVAKIYWGDAR---ERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
..++...++.+.......++. ...+++++..++|+|++.+.++....
T Consensus 149 ~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d 198 (433)
T PRK10867 149 KTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHID 198 (433)
T ss_pred HHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccC
Confidence 566666677655432223443 34445677788999999988876543
No 36
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=94.26 E-value=1.1 Score=32.19 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=56.3
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..++++|+++|.-.|.-++..+.+. +..+..+|+..+... ..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~~----------------------------------~~ 52 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSIS----------------------------------PR 52 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCCC----------------------------------HH
Confidence 3678999999998888777766653 667888998543210 12
Q ss_pred HHHHHHHHhhhcCCceEEEEec------------------CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW------------------GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~------------------g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+.+.+...|+++...-.. -.....+.++|++.+++.|+.|.+.
T Consensus 53 e~~~a~~~a~~lgi~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 53 ELEDAIIIAKEIGVNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 2234445555555554432211 0124456678999999999999753
No 37
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=94.06 E-value=0.88 Score=30.85 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=18.9
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCc
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+.|.+.+++.++|+|++|....+
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g 103 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIG 103 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccc
Confidence 577788888888999999976653
No 38
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.40 E-value=2.4 Score=33.04 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=70.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDL 86 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (164)
.+|.+.++...-.+...|.++.+ .+-++-++...-..+ .+.++
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~Rp------------------------------------AA~eQ 146 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRP------------------------------------AAIEQ 146 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCCh------------------------------------HHHHH
Confidence 46677888888888999998877 777877777644442 55677
Q ss_pred HHHHhhhcCCceEEEEecCCh---hHHHHHHHhhCCCCEEEEeccCCcccchhcc
Q 031195 87 LDTASRQKEANIVAKIYWGDA---RERLLEAIEDLKLDSLVMGSRGLGTVRRIIL 138 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~---~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~ 138 (164)
++..+.+.++.+-.....-+| ++.-+++++...+|+|++.+-|+-....-+.
T Consensus 147 L~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm 201 (451)
T COG0541 147 LKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELM 201 (451)
T ss_pred HHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHH
Confidence 888888888877765222244 5777888999999999999888776655443
No 39
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=93.24 E-value=0.67 Score=35.77 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=29.2
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
|+..++|++++.|+-.+..+.++.-.|. ..+..+.++-
T Consensus 3 ~l~~k~IllgvTGsiaa~k~~~lv~~L~-~~g~~V~vv~ 40 (399)
T PRK05579 3 MLAGKRIVLGVSGGIAAYKALELVRRLR-KAGADVRVVM 40 (399)
T ss_pred CCCCCeEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEE
Confidence 4567899999999998888888887774 4566665543
No 40
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=93.22 E-value=2.3 Score=31.45 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.+.++++.+...|.-++..+.+.....+..+.+||+.....+. +.
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~----------------------------------Et 64 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFR----------------------------------EM 64 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCH----------------------------------HH
Confidence 55678889999999888888877655446689999997665432 23
Q ss_pred HHHHHHHhhhcCCceEEEEec-----CC--------------hhHHHHHHHhhCCCCEEEEeccCC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-----GD--------------ARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-----g~--------------~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
.+...+.++..|+++.+.... |- -.+.+.++++++++|.++.|.+..
T Consensus 65 ~efrd~~a~~~gl~l~v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRD 130 (294)
T TIGR02039 65 IAFRDHMVAKYGLRLIVHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRD 130 (294)
T ss_pred HHHHHHHHHHhCCCEEEEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChh
Confidence 333344444555555543221 10 124577778889999999997653
No 41
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=93.21 E-value=1.4 Score=29.16 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHH---HhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEA---IEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
-..++...+.+.+.|+.++..++.. ...+.+.+| +++.++..||-|..+...+.+ -+...++.||+=|
T Consensus 15 ~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPG--------mvAa~T~lPViGV 86 (162)
T COG0041 15 WDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPG--------MVAAKTPLPVIGV 86 (162)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcch--------hhhhcCCCCeEec
Confidence 3667788888899999999999885 555555555 566778889998877665553 2445678999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|-++
T Consensus 87 Pv~s 90 (162)
T COG0041 87 PVQS 90 (162)
T ss_pred cCcc
Confidence 8764
No 42
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=93.05 E-value=1.4 Score=29.32 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHH---hhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAI---EDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++..+.++..|++++..+..- ...+.+.+++ ++.+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp--------gvva~~t~~PVIgv 82 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP--------GMVAALTPLPVIGV 82 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH--------HHHHhccCCCEEEe
Confidence 4667788888889999999988874 4555555554 5567888888866554433 44666788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 83 P~~~ 86 (156)
T TIGR01162 83 PVPS 86 (156)
T ss_pred cCCc
Confidence 9754
No 43
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=93.03 E-value=0.82 Score=29.22 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=60.1
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
|||++++.|+.....+.++..++.+. +.++.++- .. ...
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~---S~-------------------------------------~A~ 39 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVL---SP-------------------------------------SAE 39 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEE---SH-------------------------------------HHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEE---CC-------------------------------------cHH
Confidence 68999999999998888888887655 66655543 22 111
Q ss_pred HHHHHHhhhcCCceEEE---EecCChhHHHHHHHhhCCCCEEEEeccCCcccchh---cccchhHHHhhcC---CccEEE
Q 031195 85 DLLDTASRQKEANIVAK---IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRI---ILGSVSNYVMTHA---PCPVTI 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~---~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~---~~~s~~~~i~~~~---~~pVli 155 (164)
+.+.... ..+-++... ...++....+ +..++ +|++|+..-..+...++ +-.+....++... +.||++
T Consensus 40 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~~--~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi 115 (129)
T PF02441_consen 40 RFVTPEG-LTGEPVYTDWDTWDRGDPAEHI-ELSRW--ADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVI 115 (129)
T ss_dssp HHSHHHG-HCCSCEECTHCTCSTTTTTCHH-HHHHT--ESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEE
T ss_pred HHhhhhc-cccchhhhccccCCCCCCcCcc-ccccc--CCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEE
Confidence 1111111 111111111 1223344343 33666 99999975544444333 2344556666666 899999
Q ss_pred EeC
Q 031195 156 VKD 158 (164)
Q Consensus 156 v~~ 158 (164)
+|.
T Consensus 116 ~P~ 118 (129)
T PF02441_consen 116 APA 118 (129)
T ss_dssp EEE
T ss_pred EEe
Confidence 985
No 44
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.98 E-value=2.7 Score=32.80 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=56.1
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDL 86 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (164)
+++...|+..+-.+...|..+....+..+.++......+ .+.++
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~------------------------------------~a~~Q 146 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP------------------------------------AAIEQ 146 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch------------------------------------HHHHH
Confidence 344445666677788888887655677777776544331 23445
Q ss_pred HHHHhhhcCCceEEEEecCChh---HHHHHHHhhCCCCEEEEeccCCccc
Q 031195 87 LDTASRQKEANIVAKIYWGDAR---ERLLEAIEDLKLDSLVMGSRGLGTV 133 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dlivlg~~~~~~~ 133 (164)
+..++...++++.......+|. ...++.+...++|+|++.+.++...
T Consensus 147 L~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~ 196 (428)
T TIGR00959 147 LKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQI 196 (428)
T ss_pred HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcccc
Confidence 5556666666655432223443 3445566678899999998887644
No 45
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=92.93 E-value=3.3 Score=31.62 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=26.5
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
.-++|+|+++|.-.|.-++..+.+ .+..++.+|+..
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~ 39 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRF 39 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEec
Confidence 457999999998877765554443 467888888764
No 46
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=92.89 E-value=0.75 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=27.3
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
+++|++++.++..+..+.++.-.|.+ .+.++.++-
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVLM 35 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 58999999999999998888887754 466665443
No 47
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=92.88 E-value=2.1 Score=33.72 Aligned_cols=107 Identities=10% Similarity=0.118 Sum_probs=65.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
.+++.++.+.- ++..+..|+..+-.+.++-|...+.+.. +
T Consensus 361 dviltyg~s~v----V~~ill~A~~~~k~frVvVVDSRP~~EG------------------------------------~ 400 (556)
T KOG1467|consen 361 DVLLTYGSSSV----VNMILLEAKELGKKFRVVVVDSRPNLEG------------------------------------R 400 (556)
T ss_pred CEEEEecchHH----HHHHHHHHHHhCcceEEEEEeCCCCcch------------------------------------H
Confidence 56777777664 4444444566677777777766654321 3
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC---CcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG---LGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~---~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+..+.+...|+++++....+ ...| ..+ ++-|++|.+. .|.+-.....+...-+.++.++||||+=..
T Consensus 401 ~~lr~Lv~~GinctYv~I~a--~syi---m~e--vtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~ 470 (556)
T KOG1467|consen 401 KLLRRLVDRGINCTYVLINA--ASYI---MLE--VTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEA 470 (556)
T ss_pred HHHHHHHHcCCCeEEEEehh--HHHH---HHh--cceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEech
Confidence 45566677899999977654 1122 344 8889999875 233322223333444566778999998543
No 48
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=92.60 E-value=1.9 Score=33.77 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=47.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcC-CCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLL-DKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~-~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
-++|+|++.|...|..++..+..+.. ..+..++++||...... ....
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~--------------------------------~s~~ 62 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP--------------------------------NADS 62 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc--------------------------------chHH
Confidence 47899999999999988877776542 35679999999654321 1134
Q ss_pred HHHHHHHHhhhcCCceEEE
Q 031195 83 ALDLLDTASRQKEANIVAK 101 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~ 101 (164)
..+.+.+.|...|+++...
T Consensus 63 ~~~~~~~~~~~l~i~~~~~ 81 (436)
T PRK10660 63 WVKHCEQVCQQWQVPLVVE 81 (436)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 4466778888888877754
No 49
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.20 E-value=4.1 Score=31.83 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=54.9
Q ss_pred EEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHH
Q 031195 8 GVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLL 87 (164)
Q Consensus 8 Lv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (164)
++...|+..+-.+...|..+. ..+.++.++...... ..+.+++
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R------------------------------------~aA~eQL 147 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFR------------------------------------AGAFDQL 147 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccc------------------------------------hhHHHHH
Confidence 344456666677777777664 346677777653332 1344555
Q ss_pred HHHhhhcCCceEEEEecCChhH---HHHHHHhhCCCCEEEEeccCCcccch
Q 031195 88 DTASRQKEANIVAKIYWGDARE---RLLEAIEDLKLDSLVMGSRGLGTVRR 135 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~---~I~~~a~~~~~dlivlg~~~~~~~~~ 135 (164)
+..++..++.+.......++.+ .-++.++..++|+|++.+.|+.....
T Consensus 148 k~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~ 198 (429)
T TIGR01425 148 KQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQED 198 (429)
T ss_pred HHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchH
Confidence 6666666666654333345533 34555666789999999888765543
No 50
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=92.19 E-value=3.4 Score=31.96 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=26.7
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+|+++++|.-.|.-++.++.+. +..++.+|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5889999988888777776542 778999999654
No 51
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=91.98 E-value=1.3 Score=34.94 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=28.8
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
..++|++++.++-.+.++.++.-.|.+ .+..|.++-
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~k-~G~~V~Vvm 104 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLKE-RGAHVRCVL 104 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHh-CcCEEEEEE
Confidence 468999999999999999999888754 566665554
No 52
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=91.92 E-value=2.5 Score=27.95 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhC---CCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDL---KLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~---~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+++.+.+++.|+.++..+... ...+.+.+++++. +++.+|.+....+.+ ..-+.-.++.||+-|
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L--------pgvva~~t~~PVIgv 84 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAAL--------PGVVASLTTLPVIGV 84 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H--------HHHHHHHSSS-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccc--------hhhheeccCCCEEEe
Confidence 5677888888889999999888774 5666777776654 578877776654443 344556778999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 85 P~~~ 88 (150)
T PF00731_consen 85 PVSS 88 (150)
T ss_dssp EE-S
T ss_pred ecCc
Confidence 8654
No 53
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=91.90 E-value=3 Score=28.82 Aligned_cols=82 Identities=15% Similarity=0.023 Sum_probs=56.0
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
+||.|-++++.....|+-.|+. ....++++.+|-...+.. .
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A------------------------------------~-- 41 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADA------------------------------------Y-- 41 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCC------------------------------------H--
Confidence 4788888999888888888887 444577777766544331 2
Q ss_pred HHHHHHhhhcCCceEEEEecC-----ChhHHHHHHHhhCCCCEEEEec
Q 031195 85 DLLDTASRQKEANIVAKIYWG-----DARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g-----~~~~~I~~~a~~~~~dlivlg~ 127 (164)
..+++++.|+...+.-..+ ....+|.+..+.+++|+||+..
T Consensus 42 --~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 42 --ALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred --HHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 3345556666654422222 2578999999999999999963
No 54
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.45 E-value=1.2 Score=33.22 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=36.2
Q ss_pred EEecC-ChhHHHHHHHhhC-------CCCEEEEeccCCcccchhcc-cchhHHHhhcCCccEEEEeCCCC
Q 031195 101 KIYWG-DARERLLEAIEDL-------KLDSLVMGSRGLGTVRRIIL-GSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 101 ~~~~g-~~~~~I~~~a~~~-------~~dlivlg~~~~~~~~~~~~-~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
..+.| +....|++..+.. ++|+||++..|.+...=+.| .-..-.-+..+++||+.-=.++.
T Consensus 49 ~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe~ 118 (319)
T PF02601_consen 49 ASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHET 118 (319)
T ss_pred ccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCCC
Confidence 34556 4566666654432 49999999776653332223 33444556788999987544443
No 55
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=91.16 E-value=3.6 Score=28.30 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=53.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDL 86 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (164)
|+|+++|...|..++..+.+.. +..+..+|+...... ....+.
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g~~~----------------------------------~~~~~~ 43 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSPLFP----------------------------------RRELEE 43 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCCCCC----------------------------------HHHHHH
Confidence 5788888888887776665532 237888888544210 233445
Q ss_pred HHHHhhhcCCceEEEEec------------------C-ChhHHHHHHHhhCCCCEEEEeccC
Q 031195 87 LDTASRQKEANIVAKIYW------------------G-DARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~------------------g-~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+...|+++...... . -....+.+++++.+++.|+.|.+.
T Consensus 44 ~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 44 AKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred HHHHHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 556666666655443211 0 124466678999999999999764
No 56
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=91.08 E-value=0.84 Score=30.41 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=65.2
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
.+..|+..|++ .+.++..|++.++..... . ...........+.+..+.+.+++.|
T Consensus 12 ~DN~aL~~A~~----~~~~v~~vfv~d~~~~~~-----------------~----~~~~~r~~Fl~~sL~~L~~~L~~~g 66 (165)
T PF00875_consen 12 HDNPALHAAAQ----NGDPVLPVFVFDPEEFHP-----------------Y----RIGPRRRRFLLESLADLQESLRKLG 66 (165)
T ss_dssp TT-HHHHHHHH----TTSEEEEEEEE-HHGGTT-----------------C----SSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHH----cCCCeEEEEEeccccccc-----------------c----cCcchHHHHHHHHHHHHHHHHHhcC
Confidence 44556666643 577899999988862110 0 0001112223466667777777766
Q ss_pred CceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 96 ANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 96 ~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+. ..+..|++.+.+.+.+++.+++.|+....-..... -......+.+...++.+..+..
T Consensus 67 ~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~--~rd~~v~~~l~~~~i~~~~~~~ 125 (165)
T PF00875_consen 67 IP--LLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYER--RRDERVRKALKKHGIKVHTFDD 125 (165)
T ss_dssp S---EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHH--HHHHHHHHHHHHTTSEEEEE--
T ss_pred cc--eEEEecchHHHHHHHHHhcCcCeeEeccccCHHHH--HHHHHHHHHHHhcceEEEEECC
Confidence 55 45777999999999999999999998754332221 1122344455556677766544
No 57
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=90.84 E-value=1.2 Score=26.97 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
-..+++.+.+.+.|++++... .+.. .+.+... ++|+|+++..-..... ..+......++||.++++..+
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a--~~~~-~~~~~~~--~~Dvill~pqi~~~~~------~i~~~~~~~~ipv~~I~~~~Y 86 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAA--GSYG-AAGEKLD--DADVVLLAPQVAYMLP------DLKKETDKKGIPVEVINGAQY 86 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEE--ecHH-HHHhhcC--CCCEEEECchHHHHHH------HHHHHhhhcCCCEEEeChhhc
Confidence 355778888888888876433 2222 2334444 4899999865443222 245567788899999998765
Q ss_pred C
Q 031195 162 G 162 (164)
Q Consensus 162 ~ 162 (164)
+
T Consensus 87 ~ 87 (95)
T TIGR00853 87 G 87 (95)
T ss_pred c
Confidence 3
No 58
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.77 E-value=5.2 Score=29.47 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
..||.|.+.++..+..++-.++.- ...++.+.+|--..+
T Consensus 89 ~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~---------------------------------------- 127 (286)
T PRK06027 89 RKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHD---------------------------------------- 127 (286)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcCh----------------------------------------
Confidence 457888888887777666666542 334555555443211
Q ss_pred HHHHHHHhhhcCCceEEEEec----CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW----GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~----g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+...+++.|+++...... .+....+.+..++.++|++|+....
T Consensus 128 --~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 128 --DLRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred --hHHHHHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecch
Confidence 1222366778877653221 2345678888999999999998654
No 59
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=90.71 E-value=3.3 Score=27.15 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=27.3
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+|+|++.|...|..++..+....... .++.++++....
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCCC
Confidence 57899999999988777776654332 477888875543
No 60
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=90.65 E-value=4.9 Score=30.01 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=34.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCch
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDE 47 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~ 47 (164)
+.++.+++.+...|.-++..+.+.....+..+-+|||.....+.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~Fp 80 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFR 80 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCH
Confidence 56788999999999988888887765556688999987666543
No 61
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=90.33 E-value=5 Score=29.49 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=53.5
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
++||.|-+.++..+..++-.+.. ....++.+.++- ...+ .
T Consensus 84 ~~ki~vl~Sg~g~nl~~l~~~~~-~g~l~~~i~~vi--sn~~------------------------------------~- 123 (280)
T TIGR00655 84 LKRVAILVSKEDHCLGDLLWRWY-SGELDAEIALVI--SNHE------------------------------------D- 123 (280)
T ss_pred CcEEEEEEcCCChhHHHHHHHHH-cCCCCcEEEEEE--EcCh------------------------------------h-
Confidence 56899999999988888877765 233455554443 3321 1
Q ss_pred HHHHHHHhhhcCCceEEEEec----CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW----GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~----g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+...+++.|+++...... ......+.+..++.++|++|+....
T Consensus 124 ---~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 124 ---LRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred ---HHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 112366777877653321 1234578888999999999997553
No 62
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=90.23 E-value=0.52 Score=28.83 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
.-..+++++.+++.|++++..- . ...++.++... +|++++|..-+..+.. ..........||.++++..
T Consensus 14 s~la~km~~~a~~~gi~~~i~a--~-~~~e~~~~~~~--~Dvill~PQv~~~~~~------i~~~~~~~~ipv~~I~~~~ 82 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAA--G-AYGSHYDMIPD--YDLVILAPQMASYYDE------LKKDTDRLGIKLVTTTGKQ 82 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEE--e-eHHHHHHhccC--CCEEEEcChHHHHHHH------HHHHhhhcCCCEEEeCHHH
Confidence 3556788888888998877532 2 23345555555 8999998664443332 4567777789999998654
Q ss_pred C
Q 031195 161 F 161 (164)
Q Consensus 161 ~ 161 (164)
+
T Consensus 83 Y 83 (99)
T cd05565 83 Y 83 (99)
T ss_pred H
Confidence 3
No 63
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=90.16 E-value=3 Score=29.18 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=48.8
Q ss_pred HHHHhhhcCCceEEEEecC---Ch---hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 87 LDTASRQKEANIVAKIYWG---DA---RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g---~~---~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+++.+.++.+.. +..| +| ..++.+..++.+.|.+|++++..... .++-+..++..+..|.+|+...+
T Consensus 23 lDErAdRedi~vrV-vgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaP----GP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 23 LDERADREDIEVRV-VGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAP----GPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHhhcccCCceEEE-eccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC----CchHHHHHHhhcCCCEEEecCCc
Confidence 44566666776664 3333 23 45566678889999999998765432 35568899999999999997655
No 64
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=90.04 E-value=2.5 Score=35.59 Aligned_cols=41 Identities=22% Similarity=0.109 Sum_probs=35.8
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
.+|.+..=+.+.++.|+.++.+++.+.+.++++++..+...
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDES 655 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccch
Confidence 36777777888888999999999999999999999988764
No 65
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=89.64 E-value=6.2 Score=28.56 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=61.1
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
...+++|++.|.-.|--.+..|... .|.++..+.|..+... ++
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~---lG~~v~AvTv~sP~~p----------------------------------~~ 58 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEA---LGDNVVAVTVDSPYIP----------------------------------RR 58 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHH---hccceEEEEEecCCCC----------------------------------hh
Confidence 3459999999988877655555443 4678888888775421 34
Q ss_pred HHHHHHHHhhhcCCceEEEEec--C----------------ChhHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW--G----------------DARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~--g----------------~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.++.....+.+-|++.+..-.. + .+.+.|.+.+.+.++|.|+=|+..
T Consensus 59 e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 59 EIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred hhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 4555666666666655542211 1 247889999999999999999764
No 66
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=89.53 E-value=5.7 Score=29.35 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=53.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
..||.|-+.++..+..++-.+.+. ...++.+.+| +...+ .
T Consensus 93 ~~kiavl~Sg~g~nl~al~~~~~~-~~l~~~i~~v--isn~~------------------------------------~- 132 (289)
T PRK13010 93 RPKVVIMVSKFDHCLNDLLYRWRM-GELDMDIVGI--ISNHP------------------------------------D- 132 (289)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHC-CCCCcEEEEE--EECCh------------------------------------h-
Confidence 457888888888888777777652 3344554443 33321 1
Q ss_pred HHHHHHHhhhcCCceEEEEec----CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW----GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~----g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+++.|+++...-.. ......+.+..+++++|++|+....
T Consensus 133 ---~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 133 ---LQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred ---HHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhh
Confidence 235667778877652211 2345678999999999999997554
No 67
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=89.40 E-value=2.4 Score=33.52 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhc
Q 031195 15 PSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQK 94 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (164)
-....||..|+. .+..|.+|++.++..... .... ........+.+..+.+.+.+.
T Consensus 13 l~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~---------------~~~~------~~r~~Fl~esL~~L~~~L~~~ 67 (471)
T TIGR03556 13 LSDNIGLAAARQ----QSAKVVGLFCLDPNILQA---------------DDMA------PARVAYLIGCLQELQQRYQQA 67 (471)
T ss_pred cchHHHHHHHHh----cCCCEEEEEEEchhhhcc---------------ccCC------HHHHHHHHHHHHHHHHHHHHC
Confidence 345567777764 345799999988753210 0000 001123356677777777777
Q ss_pred CCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 95 EANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 95 ~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
|+.. .+..|++.+.+.+.+++.+++.|+....
T Consensus 68 G~~L--~v~~G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 68 GSQL--LILQGDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred CCCe--EEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 7666 4667999999999999999999998644
No 68
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=89.32 E-value=8.4 Score=30.03 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....||..|+.. +..|..|+|.++...... ..+ ..+. ..........+.++.+.+.+
T Consensus 10 DLRl~DN~aL~~A~~~----~~~vl~vfi~dp~~~~~~-----~~~--~~~~--------~~~~r~~Fl~esL~~L~~~L 70 (429)
T TIGR02765 10 DLRVHDNPALYKASSS----SDTLIPLYCFDPRQFKLT-----HFF--GFPK--------TGPARGKFLLESLKDLRTSL 70 (429)
T ss_pred CCccccHHHHHHHHhc----CCeEEEEEEECchHhccc-----ccc--ccCC--------CCHHHHHHHHHHHHHHHHHH
Confidence 3333456677777754 336999999887532100 000 0000 00111223356777777777
Q ss_pred hhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 92 RQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
++.|+... +..|++.+.|.+.+++.+++.|+.....
T Consensus 71 ~~~g~~L~--v~~G~~~~vl~~L~~~~~~~~V~~~~~~ 106 (429)
T TIGR02765 71 RKLGSDLL--VRSGKPEDVLPELIKELGVRTVFLHQEV 106 (429)
T ss_pred HHcCCCeE--EEeCCHHHHHHHHHHHhCCCEEEEeccC
Confidence 77776664 5679999999999999999999997543
No 69
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.30 E-value=7.8 Score=30.25 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
...+++...+...++.+.......+..++|..+.+..++|+|++.+.|++...
T Consensus 283 aAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 283 GTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcC
Confidence 34455666666667666543222344444444444457999999988876544
No 70
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=89.12 E-value=4.9 Score=26.75 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=24.6
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++|.+.|...|..++..+.. .+..+.++++...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~~ 34 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDYG 34 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEECC
Confidence 588999998888877666654 2456888888543
No 71
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=88.93 E-value=1.4 Score=26.69 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
...+++.+.+.+.|++++... .+.. .+-.... ++|+|+++..-...+.. .+..+...++||.++++..+
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~--~~~~-~~~~~~~--~~Diil~~Pqv~~~~~~------i~~~~~~~~~pv~~I~~~~Y 82 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEA--VPES-ELEEYID--DADVVLLGPQVRYMLDE------VKKKAAEYGIPVAVIDMMDY 82 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEE--ecHH-HHHHhcC--CCCEEEEChhHHHHHHH------HHHHhccCCCcEEEcChHhc
Confidence 345678888888888765433 3332 2334444 49999998654332222 34445567899999998766
Q ss_pred C
Q 031195 162 G 162 (164)
Q Consensus 162 ~ 162 (164)
+
T Consensus 83 ~ 83 (96)
T cd05564 83 G 83 (96)
T ss_pred c
Confidence 4
No 72
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=88.92 E-value=2.8 Score=29.02 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=53.1
Q ss_pred CCccHHHHHHHHHHhcCC-CCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 13 FSPSSKFALSWAVNNLLD-KGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 13 ~s~~~~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
.++++..|++.|+++-.. .--.++.+.+-+... ++.++......
T Consensus 38 mNPF~eIAvEEAvrlKEk~l~eeviavs~G~aqs-----------------------------------~~ilRt~LA~G 82 (254)
T KOG3180|consen 38 MNPFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQS-----------------------------------QEILRTALAKG 82 (254)
T ss_pred cCchHHHHHHHHHhHhhhhhhheEEEEecCccch-----------------------------------HHHHHHHHhcc
Confidence 467789999999998765 333566666544432 34444444444
Q ss_pred hhcCCceEEEE---ecC-ChhHHHHHHHhhCCCCEEEEecc
Q 031195 92 RQKEANIVAKI---YWG-DARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 92 ~~~~~~~~~~~---~~g-~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...++.++..- .+. .+++.+-..+...+.||++||..
T Consensus 83 adr~~hv~~~~~~~lepl~vAKiLk~~vekek~~lVllGKQ 123 (254)
T KOG3180|consen 83 ADRGVHVEVVGAEELEPLHVAKILKKLVEKEKSDLVLLGKQ 123 (254)
T ss_pred CCceeEEecCchhhccchHHHHHHHHHHHhhcCCEEEEccc
Confidence 55555555421 112 56788888899999999999964
No 73
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.74 E-value=7.1 Score=29.44 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=59.2
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDL 86 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (164)
++|.|+|...+-.....|.++- ..|-++.+..-... ...+.++
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTF------------------------------------RAaAiEQ 185 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTF------------------------------------RAAAIEQ 185 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchH------------------------------------HHHHHHH
Confidence 4566777777666666666543 44555544432111 1477788
Q ss_pred HHHHhhhcCCceEEEEecC-ChhHHH---HHHHhhCCCCEEEEeccCCcccc
Q 031195 87 LDTASRQKEANIVAKIYWG-DARERL---LEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g-~~~~~I---~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
+..+.++.|+.+-..- .| ||+..+ +++|+..++|+|++.+-|+-...
T Consensus 186 L~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk 236 (340)
T COG0552 186 LEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCc
Confidence 8999999888877653 55 775444 56688899999999887765433
No 74
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=88.69 E-value=2 Score=32.35 Aligned_cols=68 Identities=28% Similarity=0.383 Sum_probs=49.7
Q ss_pred HHHhhhcCCceEEEEecCCh---------hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 88 DTASRQKEANIVAKIYWGDA---------RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~---------~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+.+.+ +.++...+..||. .+.|++.++..++|++|.|.--..+.-+..-|.++..+-.+..+|++..
T Consensus 41 ~~~l~~-~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 41 EKALKD-DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHhcC-CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 334443 4677766777643 6788899999999999999654444444556778888999999999864
No 75
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=88.63 E-value=1.2 Score=27.45 Aligned_cols=71 Identities=10% Similarity=-0.003 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
-..+++++.+.+.|++++.. ..+.. .+.++....++|++++|..-+.... -...+....+.||.++++..+
T Consensus 16 lla~k~k~~~~e~gi~~~i~--a~~~~-e~~~~~~~~~~DvIll~PQi~~~~~------~i~~~~~~~~ipv~~I~~~~Y 86 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVD--AITAT-EGEKAIAAAEYDLYLVSPQTKMYFK------QFEEAGAKVGKPVVQIPPQAY 86 (104)
T ss_pred HHHHHHHHHHHHCCCceEEE--EecHH-HHHHhhccCCCCEEEEChHHHHHHH------HHHHHhhhcCCCEEEeCHHHc
Confidence 45566778888888876642 23332 4555555567999999865332222 245566677899999987544
No 76
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=88.20 E-value=3.2 Score=28.23 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=25.4
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
|+|++++.++..+..+.+..-.|. ..+..++++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~-~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLT-KLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 689999999999988887766664 4466665443
No 77
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=87.16 E-value=3.7 Score=32.08 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=36.2
Q ss_pred EecC-ChhHHHHHHHhhC---CCCEEEEeccCCcccchhcc-cchhHHHhhcCCccEEEEeCCCC
Q 031195 102 IYWG-DARERLLEAIEDL---KLDSLVMGSRGLGTVRRIIL-GSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 102 ~~~g-~~~~~I~~~a~~~---~~dlivlg~~~~~~~~~~~~-~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
.+.| .....|++..+.. ++|+||++..|.+...=+.| .-..-..+..+++||+.-=.++.
T Consensus 171 ~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~ 235 (438)
T PRK00286 171 LVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHET 235 (438)
T ss_pred cCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCCC
Confidence 3447 4566776665443 36999999776653332223 33444566788999987644443
No 78
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=87.15 E-value=10 Score=28.15 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC---CcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG---LGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~---~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+.+.+++.|++++..+ ..++..+.++ +|.+++|... .+.+-.....+..--..++...|++++-.
T Consensus 160 ~~~ak~L~~~gI~~~~I~-----Dsa~~~~~~~--vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ae 229 (301)
T COG1184 160 RIMAKELRQSGIPVTVIV-----DSAVGAFMSR--VDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAE 229 (301)
T ss_pred HHHHHHHHHcCCceEEEe-----chHHHHHHHh--CCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEee
Confidence 446677788888877654 2345566777 9999999875 33444444445556678899999999854
No 79
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=87.02 E-value=6.9 Score=26.92 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=25.3
Q ss_pred ceEEEEeCCCccHHHHH-HHHHHhcCCCCCeEEEEE
Q 031195 5 RKIGVALDFSPSSKFAL-SWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al-~~a~~la~~~~~~l~ll~ 39 (164)
++|++++.|+..+..+. +..-.| ...+..++++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCcCEEEEEE
Confidence 58999999999999886 555555 45577766554
No 80
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=86.60 E-value=5.3 Score=24.22 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=24.9
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
|+|++.|...|.-++..+.+. +.++.++|+....
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----GYQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 578999988888777766664 2378888886554
No 81
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=86.50 E-value=1.9 Score=28.09 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=37.0
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCc----ccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLG----TVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~----~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
..+.|.+.+++++++.+|+|-+-.. +........+++.+-...+.||..+-+..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 4788999999999999999954332 11122233566777777789988886543
No 82
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=86.32 E-value=9.2 Score=26.76 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=49.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
||.|-+.++.....++-.+++- ...++.+ +.|+..... .
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~-~~l~~~i--~~visn~~~--------------------------------------~ 39 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLD-GRVNGDV--VVVVTNKPG--------------------------------------C 39 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHc-CCCCeEE--EEEEEeCCC--------------------------------------C
Confidence 4778888888887777777652 2234444 444444320 1
Q ss_pred HHHHHhhhcCCceEEEEecC-----ChhHHHHHHHhhCCCCEEEEecc
Q 031195 86 LLDTASRQKEANIVAKIYWG-----DARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g-----~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...+.+.+.|+.+....... ...+++.+..++.++|++|+...
T Consensus 40 ~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 40 GGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGY 87 (207)
T ss_pred hHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCc
Confidence 12456666677765422211 12567888889999999999644
No 83
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.19 E-value=9.6 Score=26.85 Aligned_cols=33 Identities=15% Similarity=0.051 Sum_probs=14.4
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEE
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYII 38 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll 38 (164)
|.|+.+..........+..|+. |++.+..++++
T Consensus 43 kliVe~~s~g~~~~ttiaLaaA-Ar~TgGR~vCI 75 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAA-ARQTGGRHVCI 75 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHH-HHhcCCeEEEE
Confidence 3444444443222233444443 45566666433
No 84
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=85.92 E-value=4.5 Score=32.65 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHH---HhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEA---IEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+..+.+.+.+.+.+...+..++.+...+++... ....++|+||-. |+++..|=++.+.||+-++
T Consensus 23 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~ 90 (538)
T PRK15424 23 SRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNGAYLKSRLSVPVILIK 90 (538)
T ss_pred HHHHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHHHHHHhhCCCCEEEec
Confidence 3577778888888877777766665444444333 445689988763 6678878888899999998
Q ss_pred CCCC
Q 031195 158 DPSF 161 (164)
Q Consensus 158 ~~~~ 161 (164)
...+
T Consensus 91 ~s~~ 94 (538)
T PRK15424 91 PSGF 94 (538)
T ss_pred CCHh
Confidence 7654
No 85
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=85.87 E-value=4 Score=31.85 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHH---Hhh-CCCCEEEEeccCCcccchh-cccchhHHHhhcCCccEEE
Q 031195 82 DALDLLDTASRQKEANIVAKIYWG-DARERLLEA---IED-LKLDSLVMGSRGLGTVRRI-ILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~-~~~dlivlg~~~~~~~~~~-~~~s~~~~i~~~~~~pVli 155 (164)
.++..+.+.+....+-+-...+.| +...+|++. +++ ..+|.||+|..|.+-..=+ |.....-.-+..++.||+-
T Consensus 151 DIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 151 DILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred HHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEe
Confidence 344444444433223333334556 456666655 333 3499999997766533322 2333445566788999986
Q ss_pred EeC
Q 031195 156 VKD 158 (164)
Q Consensus 156 v~~ 158 (164)
.=.
T Consensus 231 AVG 233 (440)
T COG1570 231 AVG 233 (440)
T ss_pred ecc
Confidence 533
No 86
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=85.31 E-value=0.99 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.3
Q ss_pred CChhHHHHHHHhhCCCCEEEEecc
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
-+-.+.|.++|+++++|++|+|..
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSH
T ss_pred CCCHHHHHHHHHHcCCCEEEECCh
Confidence 356789999999999999999954
No 87
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=85.30 E-value=1.5 Score=30.05 Aligned_cols=36 Identities=3% Similarity=-0.113 Sum_probs=29.2
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
|++|++++.|+-.+.++.+..-.|.+..+.++.++-
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~ 36 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVI 36 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 579999999999999999999888665576755544
No 88
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.13 E-value=6.4 Score=24.51 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=34.2
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.-+...++..|.++.. .....+.+.+++.+.+.++|+|.+......
T Consensus 17 ~~~~~~l~~~G~~V~~-lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~ 62 (119)
T cd02067 17 NIVARALRDAGFEVID-LGVDVPPEEIVEAAKEEDADAIGLSGLLTT 62 (119)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 4566677777877622 333467889999999999999999876443
No 89
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=84.72 E-value=6.9 Score=30.67 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=35.7
Q ss_pred EecC-ChhHHHHHHHh----hCCCCEEEEeccCCcccchhcc-cchhHHHhhcCCccEEEEeCCCC
Q 031195 102 IYWG-DARERLLEAIE----DLKLDSLVMGSRGLGTVRRIIL-GSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 102 ~~~g-~~~~~I~~~a~----~~~~dlivlg~~~~~~~~~~~~-~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
.+.| .....|++..+ ..++|+||++..|.+...=+.| .-..-.-+..+++||+.-=.++.
T Consensus 165 ~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~ 230 (432)
T TIGR00237 165 LVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHET 230 (432)
T ss_pred cccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcCC
Confidence 3446 44556655543 3348999999776664432223 33344456788999987644443
No 90
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=84.40 E-value=5.7 Score=28.19 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-----CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-----GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-----g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
..++..+.+.++..|..+.+.-.. ++..+.|.++.++++++-|.+-..+.-.+.. ..+.+....++|+-+
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~-----~l~~~~~~~~i~~~~ 122 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQ-----RLESLAQQLGIPLEV 122 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHH-----HHHH----SSS-EEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHH-----HHHhhhcccCCceEE
Confidence 467788888888999999986655 3668899999999999999998776655544 345677788899999
Q ss_pred EeCCCC
Q 031195 156 VKDPSF 161 (164)
Q Consensus 156 v~~~~~ 161 (164)
++.+.+
T Consensus 123 ~~~~~F 128 (224)
T PF04244_consen 123 LEDPHF 128 (224)
T ss_dssp E--TTS
T ss_pred eCCCCc
Confidence 987754
No 91
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=84.28 E-value=8.6 Score=30.98 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHH---HhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEA---IEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+..+.+.+.+.+.+-..+..+..|+..+++... ....++|+||-. |+++..|=++.+.||+-++.
T Consensus 14 ~l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~ 81 (526)
T TIGR02329 14 RLFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLSLPVIVIKP 81 (526)
T ss_pred HHHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCCCCEEEecC
Confidence 455556666666544455556667665555543 556689988753 56777777788999999987
Q ss_pred CCCC
Q 031195 159 PSFG 162 (164)
Q Consensus 159 ~~~~ 162 (164)
..++
T Consensus 82 s~~D 85 (526)
T TIGR02329 82 TGFD 85 (526)
T ss_pred Chhh
Confidence 6543
No 92
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=84.00 E-value=4.9 Score=29.45 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.|+...+...+.++++.-.... ....+.|.+..+++++|+||+..|.
T Consensus 115 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 115 EEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 578888889999999988865554 5889999999999999999997664
No 93
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=83.91 E-value=14 Score=26.69 Aligned_cols=102 Identities=8% Similarity=-0.024 Sum_probs=56.4
Q ss_pred EEEeCCCcc---HHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 8 GVALDFSPS---SKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 8 Lv~vd~s~~---~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
|+++.+.+. ...++++.++++...+++|.++- ..... .....
T Consensus 1 l~~iGG~~~~~~~~~i~~~~~~lag~~~~rI~~ip---tAS~~--------------------------------~~~~~ 45 (250)
T TIGR02069 1 LVIIGGAEDKVGDREILREFVSRAGGEDAIIVIIT---SASEE--------------------------------PREVG 45 (250)
T ss_pred CeEEeCccccCChHHHHHHHHHHhCCCCceEEEEe---CCCCC--------------------------------hHHHH
Confidence 345555532 34588888999988777776543 32100 02334
Q ss_pred HHHHHHhhhcCCc-eEEEEecC---ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHh
Q 031195 85 DLLDTASRQKEAN-IVAKIYWG---DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVM 146 (164)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~~~g---~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~ 146 (164)
+.+.+.+...|.. ++...... ...+++.+...+ +|.|+++-.....+...+.++-..+++
T Consensus 46 ~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~--ad~I~~~GGnq~~l~~~l~~t~l~~~l 109 (250)
T TIGR02069 46 ERYITIFSRLGVKEVKILDVREREDASDENAIALLSN--ATGIFFTGGDQLRITSLLGDTPLLDRL 109 (250)
T ss_pred HHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhh--CCEEEEeCCCHHHHHHHHcCCcHHHHH
Confidence 4566666667763 44433321 223456666666 999999866554444444344333333
No 94
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=83.82 E-value=8.7 Score=27.51 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=46.0
Q ss_pred HHHHhhhcCCceEEEEecC-C-----hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 87 LDTASRQKEANIVAKIYWG-D-----ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g-~-----~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+++.+.++.+.. +..| . ..+......++.+.|++|+.++.... ..+.-+..++...+.|.+|+-..+
T Consensus 23 lDErAdRedI~vrv-~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~----PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 23 LDERADREDIDVRV-VGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAA----PGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHhhhcccCceEEE-eccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCC----CCchHHHHHHHhcCCCEEEEcCCC
Confidence 34555566665554 2233 1 23344445678899999998776542 224568999999999999998765
Q ss_pred C
Q 031195 161 F 161 (164)
Q Consensus 161 ~ 161 (164)
-
T Consensus 98 ~ 98 (277)
T PRK00994 98 G 98 (277)
T ss_pred c
Confidence 4
No 95
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.60 E-value=15 Score=28.55 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=56.3
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDL 86 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (164)
.+|.+.++......-.+|..+ ++.|-+..++...... ..+.++
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~-kkkG~K~~LvcaDTFR------------------------------------agAfDQ 147 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYY-KKKGYKVALVCADTFR------------------------------------AGAFDQ 147 (483)
T ss_pred EEEeccCCCcceeHHHHHHHH-HhcCCceeEEeecccc------------------------------------cchHHH
Confidence 345667777666777777775 4455555555543332 245566
Q ss_pred HHHHhhhcCCceEEEEecCCh---hHHHHHHHhhCCCCEEEEeccCCcc
Q 031195 87 LDTASRQKEANIVAKIYWGDA---RERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~---~~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
+...+.+.++++-..--+-+| +.+=++..+..++|+|++.++++-.
T Consensus 148 LkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~ 196 (483)
T KOG0780|consen 148 LKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHK 196 (483)
T ss_pred HHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchh
Confidence 777777777777664444344 4444556777899999998877543
No 96
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=83.36 E-value=7.9 Score=23.49 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-----------C-ChhHHHHHHHhhCCCCEEEEec
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-----------G-DARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-----------g-~~~~~I~~~a~~~~~dlivlg~ 127 (164)
...++.+...+...|+++-..+.. | .-.++|.+.++..++|+||...
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECC
Confidence 577888888888888765543322 3 3488999999999999999974
No 97
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=83.31 E-value=2.5 Score=27.42 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=41.0
Q ss_pred CChhHHHHHHHhhCCCCEEEEeccCCc----ccchhcccchhHHHhhcC-CccEEEEeCCC
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSRGLG----TVRRIILGSVSNYVMTHA-PCPVTIVKDPS 160 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~~~~----~~~~~~~~s~~~~i~~~~-~~pVliv~~~~ 160 (164)
+...+.|.+.+++++++.+|+|-+... +......-.+++.+-... ++||..+-+..
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCCh
Confidence 467999999999999999999976433 222223344667777777 89999987654
No 98
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=83.28 E-value=17 Score=27.14 Aligned_cols=29 Identities=24% Similarity=0.099 Sum_probs=21.4
Q ss_pred CCCCceEEEEeCCCccH-HHHHHHHHHhcC
Q 031195 1 MAGDRKIGVALDFSPSS-KFALSWAVNNLL 29 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~-~~al~~a~~la~ 29 (164)
|++.+++|-.-|.+... ..+++.|..+..
T Consensus 1 ~~~~k~ll~i~dls~~~l~~ll~~A~~~k~ 30 (304)
T PRK00779 1 MLMGRHFLSLDDLSPEELEELLDLAAELKK 30 (304)
T ss_pred CCCCCcEeehhhCCHHHHHHHHHHHHHHHh
Confidence 77889999999998764 466666666543
No 99
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.22 E-value=20 Score=28.07 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=45.4
Q ss_pred CCCccHHHHHHHHHHhc-CCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHH
Q 031195 12 DFSPSSKFALSWAVNNL-LDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTA 90 (164)
Q Consensus 12 d~s~~~~~al~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (164)
.|...+-.+...|..++ ...+..+.++...+.. ....+++..+
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r------------------------------------~~a~eqL~~~ 273 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYR------------------------------------IGAVEQLKTY 273 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH------------------------------------HHHHHHHHHH
Confidence 34445667777777776 4456677777643321 1223455555
Q ss_pred hhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 91 SRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 91 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
++..++.+.......+....+.+ ..++|+|++-+.+.....
T Consensus 274 a~~~~vp~~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d 314 (424)
T PRK05703 274 AKIMGIPVEVVYDPKELAKALEQ---LRDCDVILIDTAGRSQRD 314 (424)
T ss_pred HHHhCCceEccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCC
Confidence 55556655432211233333322 235899999877765443
No 100
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=82.51 E-value=9.2 Score=28.94 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhcCCceEEEEecCC----hhHHHHHHHhhCCCCEEE-EeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGD----ARERLLEAIEDLKLDSLV-MGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~----~~~~I~~~a~~~~~dliv-lg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..+++.+.+.+.++.+.+.+..|+ ....+.+.+++.++|.|| +|.... -+++..+......|++.||
T Consensus 37 ~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~--------~D~aK~ia~~~~~p~i~VP 108 (349)
T cd08550 37 SRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT--------LDTAKAVADRLDKPIVIVP 108 (349)
T ss_pred HHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH--------HHHHHHHHHHcCCCEEEeC
Confidence 346666777766776665554454 255667778888999877 552221 1233333334468999998
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 109 Tta 111 (349)
T cd08550 109 TIA 111 (349)
T ss_pred Ccc
Confidence 643
No 101
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=82.49 E-value=6.6 Score=28.66 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEe-cCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 81 IDALDLLDTASRQKEANIVAKIY-WGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.|+...+...+.++++.-... +....+.|....+++++|+||+..|.
T Consensus 114 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 114 PEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 57888888888999998886544 46889999999999999999998665
No 102
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=81.99 E-value=21 Score=27.38 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=24.8
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
..++|+|+++|.-.|.-++..+. ..+..+..+++.
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~ 38 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMR 38 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEec
Confidence 35799999999877765554332 356678888884
No 103
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=81.90 E-value=9 Score=29.64 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=30.4
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEE
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHI 40 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v 40 (164)
|...|+||+++.++-.+.++++.+..| ...|+.+.++--
T Consensus 1 ~l~~k~ill~v~gsiaayk~~~l~r~L-~~~ga~v~vvmt 39 (392)
T COG0452 1 LLEGKRILLGVTGSIAAYKSVELVRLL-RRSGAEVRVVMT 39 (392)
T ss_pred CCCCceEEEEecCchhhhhHHHHHHHH-hhCCCeeEEEcc
Confidence 456789999999999999987777664 667777776653
No 104
>PRK08576 hypothetical protein; Provisional
Probab=81.83 E-value=23 Score=27.92 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=25.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++|+++|...|..++..+.+... .+.++++...
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG 269 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTG 269 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCC
Confidence 899999999988887776666432 3777777443
No 105
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.53 E-value=24 Score=27.80 Aligned_cols=33 Identities=21% Similarity=0.021 Sum_probs=19.8
Q ss_pred EEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 8 GVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 8 Lv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
++...|+..+-.+...|..+.+ .+-++.++...
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D 132 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAAD 132 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCC
Confidence 3444555556677777776653 45567766543
No 106
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=81.49 E-value=15 Score=25.47 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
-.++.+..++..+..+++..+..+.++.+-
T Consensus 32 vi~e~~~~~l~ea~~la~~~g~~v~av~~G 61 (202)
T cd01714 32 IINPYDEYAVEEALRLKEKYGGEVTVVSMG 61 (202)
T ss_pred cCChHhHHHHHHHHHhhhhcCCEEEEEEEC
Confidence 345667788888998887777777776654
No 107
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=81.16 E-value=20 Score=26.52 Aligned_cols=82 Identities=9% Similarity=-0.031 Sum_probs=49.8
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
..||.|.+.++..+..++-.++.. ...++++.+|-. ..+
T Consensus 89 ~~ri~vl~Sg~g~nl~al~~~~~~-~~~~~~i~~vis--n~~-------------------------------------- 127 (286)
T PRK13011 89 RPKVLIMVSKFDHCLNDLLYRWRI-GELPMDIVGVVS--NHP-------------------------------------- 127 (286)
T ss_pred CceEEEEEcCCcccHHHHHHHHHc-CCCCcEEEEEEE--CCc--------------------------------------
Confidence 457888888887777777666652 234555554432 221
Q ss_pred HHHHHHHhhhcCCceEEEEec-C---ChhHHHHHHHhhCCCCEEEEecc
Q 031195 84 LDLLDTASRQKEANIVAKIYW-G---DARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-g---~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.+...+++.|+++...... . +....+.+..++.++|++|+...
T Consensus 128 --~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 128 --DLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred --cHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeCh
Confidence 0222366677876642211 1 23456788888999999999755
No 108
>PRK11914 diacylglycerol kinase; Reviewed
Probab=81.09 E-value=14 Score=27.29 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+..+++.+.+.+.+.+++....+. .-...+.+.+.+.++|+||+. .+.+.+.. +++.+. ..+.|+-++|-
T Consensus 26 ~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~-GGDGTi~e-----vv~~l~-~~~~~lgiiP~ 96 (306)
T PRK11914 26 HAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVV-GGDGVISN-----ALQVLA-GTDIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEE-CCchHHHH-----HhHHhc-cCCCcEEEEeC
Confidence 445566667777777666544332 345666666666778877764 34444443 233333 45678888874
No 109
>PRK00509 argininosuccinate synthase; Provisional
Probab=80.89 E-value=24 Score=27.43 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=29.1
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+++|+|+++|.-.|.-++.++.+. .+..++.+++.-..
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~Gq 39 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVGQ 39 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecCC
Confidence 579999999988887777766542 37789999986554
No 110
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=80.61 E-value=4.7 Score=25.91 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=37.6
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc----ccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG----TVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~----~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
...+.|.+.+++++++.+|+|-+-.. +........+++.|-+..+.||..+-+..
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~ 93 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERL 93 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 44788999999999999999954322 11112223466777777789998887653
No 111
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.12 E-value=24 Score=27.67 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=66.7
Q ss_pred EEeCCCcc---HHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 9 VALDFSPS---SKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 9 v~vd~s~~---~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+-+.+++. |--+++.+.++|+.. .+|||.-. +..+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGE--------------------------------------ES~~ 133 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGE--------------------------------------ESLQ 133 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCC--------------------------------------cCHH
Confidence 44455553 677889999988766 66776433 2334
Q ss_pred HHHHHhhhcCCceE-EEEecCChhHHHHHHHhhCCCCEEEEeccCCcccch--hcccch------hH---HHhhcCCccE
Q 031195 86 LLDTASRQKEANIV-AKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRR--IILGSV------SN---YVMTHAPCPV 153 (164)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~--~~~~s~------~~---~i~~~~~~pV 153 (164)
+++-++.+.++... ..+......+.|.+.+++.++|++|+.+=..-.... -.-||+ +. ++.+..+.++
T Consensus 134 QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~ 213 (456)
T COG1066 134 QIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAI 213 (456)
T ss_pred HHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeE
Confidence 45555566665333 334446788999999999999999998643221111 112332 22 3455667888
Q ss_pred EEEeC
Q 031195 154 TIVKD 158 (164)
Q Consensus 154 liv~~ 158 (164)
++|-+
T Consensus 214 fiVGH 218 (456)
T COG1066 214 FIVGH 218 (456)
T ss_pred EEEEE
Confidence 88854
No 112
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=80.09 E-value=24 Score=28.04 Aligned_cols=93 Identities=13% Similarity=0.116 Sum_probs=59.7
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--+...||..|+..+ +..|..|+|.++..... ... .........+.+..+.+.+
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~---------------~~~------~~~r~~Fl~esL~~L~~~L 66 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAA---------------HDM------APRQAAFINAQLNALQIAL 66 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhcc---------------CCC------CHHHHHHHHHHHHHHHHHH
Confidence 44445666787777543 23699999988853210 000 0011122357777777888
Q ss_pred hhcCCceEEEEe--cCChhHHHHHHHhhCCCCEEEEecc
Q 031195 92 RQKEANIVAKIY--WGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 92 ~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+..|+..-.... .|++.+.+.+.+++.+++-|+....
T Consensus 67 ~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 67 AEKGIPLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHcCCceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 887877754433 3689999999999999999988643
No 113
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=79.98 E-value=4 Score=26.87 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCccc
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTV 133 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~ 133 (164)
.+++.+.+++.|++++.........+.+.+..++ +|.|+++-......
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~--ad~I~~~GG~~~~l 49 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIRE--ADAIFLGGGDTFRL 49 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHH--SSEEEE--S-HHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHh--CCEEEECCCCHHHH
Confidence 4667788888887766544445566688888888 99999985544433
No 114
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=79.84 E-value=17 Score=26.74 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCCC
Q 031195 110 RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDPS 160 (164)
Q Consensus 110 ~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~~ 160 (164)
...+.+++.++|-+++..+.......--.-..-..+...+ +.||+++..+.
T Consensus 87 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 3446688999999998765443222111122345677788 79999997654
No 115
>PRK04527 argininosuccinate synthase; Provisional
Probab=79.68 E-value=27 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=28.3
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.++|+|++.|.-.|--++.++.+ .+..++.+++....
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~gq 38 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTGG 38 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeCC
Confidence 47999999998888777777655 36789999886554
No 116
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=79.56 E-value=26 Score=26.91 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=27.7
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
-.++|+.+.|.-.|.-|+-++.+ .|..+..+|+...
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 46899999998888876655544 4789999999743
No 117
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=79.44 E-value=9.4 Score=29.75 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=46.6
Q ss_pred cCCceEEEEecCCh---------hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 94 KEANIVAKIYWGDA---------RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 94 ~~~~~~~~~~~g~~---------~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+.++...+..||. .+.|++.++..++|++|.|.--..+--+..-|.++..+-.+..+|++..
T Consensus 42 ~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 42 EDAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred cCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 35666666777643 4678999999999999999654444444556778888888899998864
No 118
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=79.41 E-value=9.7 Score=29.68 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=46.9
Q ss_pred hcCCceEEEEecCCh---------hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 93 QKEANIVAKIYWGDA---------RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 93 ~~~~~~~~~~~~g~~---------~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
..+.++...+..||. .+.|++.++..++|++|.|.--..+--+..-|.++..+-.+..+|++..
T Consensus 41 ~~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 41 EEDAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred cCCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 335666666777643 4678999999999999999654444444556778888888899998864
No 119
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=79.13 E-value=19 Score=26.71 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHhhhcCCceEEEEecCC-hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 80 DIDALDLLDTASRQKEANIVAKIYWGD-ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+.+..+.+.++..+.+.+....+.. -+..+.+.+...++|.||.+.. .+.+. .++..+...-..|+-++|-
T Consensus 18 ~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG-DGTv~-----evingl~~~~~~~LgilP~ 91 (301)
T COG1597 18 AKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG-DGTVN-----EVANGLAGTDDPPLGILPG 91 (301)
T ss_pred hhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC-cchHH-----HHHHHHhcCCCCceEEecC
Confidence 367888889999999998888777754 6777778777779999998743 33332 2344444333333666653
No 120
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=78.98 E-value=26 Score=26.62 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=24.9
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
++|+|++++.-.|.-++..+.+ .+..+..+|+...
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~~ 35 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKLW 35 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeCC
Confidence 4899999998877765544433 4667888888643
No 121
>PLN02828 formyltetrahydrofolate deformylase
Probab=78.44 E-value=24 Score=25.87 Aligned_cols=87 Identities=11% Similarity=-0.044 Sum_probs=53.6
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..+||.|-+.++.++..++-++.+- ...++.+.+|--..+....
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~-g~l~~eI~~ViSn~~~~~~----------------------------------- 112 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQD-GRLPVDITCVISNHERGPN----------------------------------- 112 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhc-CCCCceEEEEEeCCCCCCC-----------------------------------
Confidence 3569999999999998888887663 3345665554432221100
Q ss_pred HHHHHHHHhhhcCCceEEEEec--CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW--GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+.+++.|+++...... .+..+.+.+..+ ++|++|+....
T Consensus 113 --a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAgym 157 (268)
T PLN02828 113 --THVMRFLERHGIPYHYLPTTKENKREDEILELVK--GTDFLVLARYM 157 (268)
T ss_pred --chHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEeeeh
Confidence 13445567778877643332 222346666666 49999998553
No 122
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=78.11 E-value=26 Score=26.06 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=37.2
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
+-++.+.+++.++|-+++-.+.......--.=.--..+...++.|++++..+.+
T Consensus 88 ai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~ 141 (299)
T COG0329 88 AIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSR 141 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 455667799999999999876554333222222346688888999999986654
No 123
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=77.87 E-value=13 Score=25.34 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=23.5
Q ss_pred eEEEEeCCCcc-HHHHHHHHHHhcCCCCCeEEEE
Q 031195 6 KIGVALDFSPS-SKFALSWAVNNLLDKGDTLYII 38 (164)
Q Consensus 6 ~iLv~vd~s~~-~~~al~~a~~la~~~~~~l~ll 38 (164)
||++++.++.. ....++....+++..+..+.++
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv 34 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVF 34 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 68899999843 3457788888876677776544
No 124
>PRK00919 GMP synthase subunit B; Validated
Probab=77.07 E-value=28 Score=26.02 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=28.5
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|++.|.-.|--++..+.+ ..+.+++++++....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~---~lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHR---AIGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHH---HhCCeEEEEEEECCC
Confidence 7899999998888776665554 246789999997664
No 125
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=77.02 E-value=15 Score=25.40 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=43.3
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC---ccEEEE
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP---CPVTIV 156 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~---~pVliv 156 (164)
.-+...++..|.++.. ...+-+.+.+++.+.+.++|+|.+.......... .....+.+-...+ ++|++-
T Consensus 100 ~~v~~~l~~~G~~vi~-lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 100 NLVATMLEANGFEVID-LGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEE
Confidence 4456677777777622 3345689999999999999999998754443332 2334444434432 455543
No 126
>TIGR00930 2a30 K-Cl cotransporter.
Probab=77.02 E-value=51 Score=28.92 Aligned_cols=122 Identities=16% Similarity=0.076 Sum_probs=74.3
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
++||.+........+++++-.+. ..++-..+.||.+.+... . .++.+...+
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~~~-----------------------~-----~~~~~~~~~ 627 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQGPRLE-----------------------C-----VKEAQAAEA 627 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecCchhh-----------------------h-----HHHHHHHHH
Confidence 68999988888889999999987 444566777887654211 0 011123345
Q ss_pred HHHHHhhhcCCceEEEEec-CChhHHHHHHHhhC-----CCCEEEEeccCCcccc-----hhcccchhHHHhhcCCccEE
Q 031195 86 LLDTASRQKEANIVAKIYW-GDARERLLEAIEDL-----KLDSLVMGSRGLGTVR-----RIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~-----~~dlivlg~~~~~~~~-----~~~~~s~~~~i~~~~~~pVl 154 (164)
+..+..+..+++.-..+.. .+..+.+....+.. ++..|+||.+...... .-+. ++.. -....+.-|+
T Consensus 628 ~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~-~~i~-~a~~~~~~v~ 705 (953)
T TIGR00930 628 KIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYI-GIIH-DAFDAHLAVV 705 (953)
T ss_pred HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHH-HHHH-HHHHcCCcEE
Confidence 5555666677766555555 47777777776654 5788999977542211 1111 1122 2235667788
Q ss_pred EEeC
Q 031195 155 IVKD 158 (164)
Q Consensus 155 iv~~ 158 (164)
|.+.
T Consensus 706 i~r~ 709 (953)
T TIGR00930 706 VVRN 709 (953)
T ss_pred EEcc
Confidence 8775
No 127
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=76.92 E-value=22 Score=24.68 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEe----ccCCcccchhcccchhHHHhhcCC-ccEEEE
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMG----SRGLGTVRRIILGSVSNYVMTHAP-CPVTIV 156 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg----~~~~~~~~~~~~~s~~~~i~~~~~-~pVliv 156 (164)
-..+.+...+...+..++. +...+..+..+..++..++|++++. -+..++. ...+.+.+..| ++|+++
T Consensus 11 ~~~~gl~~~L~~~~~~~~v-v~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivl 83 (207)
T PRK15411 11 YTRLGLTGYLLSRGVKKRE-INDIETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVF 83 (207)
T ss_pred HHHHHHHHHHHhCCCcceE-EEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEE
Confidence 3344555555544333333 3333445555667777889999999 3333222 25677777666 888888
Q ss_pred e
Q 031195 157 K 157 (164)
Q Consensus 157 ~ 157 (164)
-
T Consensus 84 t 84 (207)
T PRK15411 84 M 84 (207)
T ss_pred E
Confidence 4
No 128
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=76.89 E-value=35 Score=27.06 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhc
Q 031195 15 PSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQK 94 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (164)
-....||..|++ .+ .+..|+|.++..... ... .........+.+..+.+.++..
T Consensus 10 l~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~---------------~~~------~~~~~~fl~~sL~~L~~~L~~~ 63 (475)
T TIGR02766 10 VEDNPALAAAAR----AG-PVIPVFVWAPEEEGQ---------------YYP------GRVSRWWLKQSLAHLDQSLRSL 63 (475)
T ss_pred cchHHHHHHHHh----CC-CEEEEEEechHHhcc---------------ccc------cHHHHHHHHHHHHHHHHHHHHc
Confidence 345567766653 23 699999988753210 000 0011113356777788888887
Q ss_pred CCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 95 EANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 95 ~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
|...... ..|++.+.|.+.+++.+++-|+....
T Consensus 64 G~~L~v~-~~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 64 GTCLVTI-RSTDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred CCceEEE-eCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 7766642 24899999999999999999888755
No 129
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=76.87 E-value=9.2 Score=27.69 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred hcCCceEEEEecC-ChhH-HHHHHHhhCCCCEEEEeccCCcccchhcc--------cchh-HHHhhcCCccEEEEeC
Q 031195 93 QKEANIVAKIYWG-DARE-RLLEAIEDLKLDSLVMGSRGLGTVRRIIL--------GSVS-NYVMTHAPCPVTIVKD 158 (164)
Q Consensus 93 ~~~~~~~~~~~~g-~~~~-~I~~~a~~~~~dlivlg~~~~~~~~~~~~--------~s~~-~~i~~~~~~pVliv~~ 158 (164)
+.| +.+..+.+| ++.. .-++.|.+...+.+|+-++=.++.+-.+. .-.. ..=+++.+|||||+..
T Consensus 125 ~~g-~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf~S~~rv~~~~~~~~~~~d~f~~i~kI~~i~~PVLiiHg 200 (258)
T KOG1552|consen 125 RYG-SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSPFTSGMRVAFPDTKTTYCFDAFPNIEKISKITCPVLIIHG 200 (258)
T ss_pred hcC-CCceEEEEEecCCchhhhhHhhcCCcceEEEeccchhhhhhhccCcceEEeeccccccCcceeccCCEEEEec
Confidence 345 667777776 4322 24566666668999997664443331111 0000 2224567799999984
No 130
>PRK08185 hypothetical protein; Provisional
Probab=76.82 E-value=9.5 Score=28.11 Aligned_cols=55 Identities=11% Similarity=-0.036 Sum_probs=41.5
Q ss_pred CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
-....++++.|++.+..+|+..+.+........+......+.+++++||.+-=++
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDH 77 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDH 77 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3789999999999999999998776543222335667788888999998765443
No 131
>PRK13059 putative lipid kinase; Reviewed
Probab=76.58 E-value=28 Score=25.67 Aligned_cols=70 Identities=19% Similarity=0.087 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~ 158 (164)
+..+++.+.+.+.+.++...... +.-. +....+...++|.||+. .|.+.+.. +++.++.. .++|+-|+|-
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~-GGDGTv~e-----vv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIA-GGDGTVDN-----VVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEE-CCccHHHH-----HHHHHHhcCCCCcEEEECC
Confidence 34456677777777765543222 2222 33334445567877654 44544443 44555543 4588888884
No 132
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=76.53 E-value=19 Score=26.51 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHH--HHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARER--LLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.++...+.+.. .+.+-..+...+..++ ..+.+++.++|-+++..+.......--.-..-..+...++.||++...
T Consensus 60 ~~~~~~~~~~~~~-~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~ 138 (293)
T PRK04147 60 KQVLEIVAEEAKG-KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNI 138 (293)
T ss_pred HHHHHHHHHHhCC-CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3444445554432 2333333322344444 446688999999999876533222111122345677788999999975
Q ss_pred CC
Q 031195 159 PS 160 (164)
Q Consensus 159 ~~ 160 (164)
+.
T Consensus 139 P~ 140 (293)
T PRK04147 139 PA 140 (293)
T ss_pred ch
Confidence 43
No 133
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=76.46 E-value=26 Score=25.52 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.++.+.+.+.. ++.+-.-+...+. .-...+.+++.++|-+++..+.......--.-..-..+...++.||++...
T Consensus 53 ~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 53 KEVIEAVVEAVAG-RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred HHHHHHHHHHhCC-CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4445555554431 2333333322233 334455688899999999876543322211222345677778999999976
Q ss_pred CCC
Q 031195 159 PSF 161 (164)
Q Consensus 159 ~~~ 161 (164)
+..
T Consensus 132 P~~ 134 (281)
T cd00408 132 PGR 134 (281)
T ss_pred ccc
Confidence 543
No 134
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=76.30 E-value=5.4 Score=29.77 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=35.0
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC-ccc-chhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL-GTV-RRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~-~~~-~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+..+.+++..+ +|+||+|.... +.. ..++...+.+ .++++++|++.|.+-
T Consensus 163 ~~~~~~l~AI~~--ADlIvlgPGSlyTSI~P~Llv~gi~e-Ai~~s~a~kV~V~ni 215 (309)
T cd07044 163 SPSREVLEAIEK--ADNIVIGPGSLYTSILPNISVPGIRE-ALKKTXAKKVYVSNI 215 (309)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHHhhhhcCcHhHHH-HHHhcCCCeEEECCC
Confidence 457788899999 99999995442 222 2334455555 556689999888764
No 135
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=75.88 E-value=31 Score=25.82 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+.+.+.+.|++++... ++-.-. ...+ +|.+++|...- |+.-.........-+.++.+.||+++=+
T Consensus 163 ~a~~L~~~GI~vtlI~--Dsav~~---~m~~--vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 163 TAKELAEYGIPVTLIV--DSAVRY---FMKD--VDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred HHHHHHHCCCCEEEEe--hhHHHH---HHHh--CCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecc
Confidence 4445566788888644 322222 3344 99999998763 3333333333444566777899999843
No 136
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=75.87 E-value=25 Score=25.79 Aligned_cols=79 Identities=10% Similarity=0.018 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.++.+.+.+.. ++.+-..+...+. .-+..+.+++.++|-+++..+.......--.-..-..|...++.||++...
T Consensus 57 ~~~~~~~~~~~~~-~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 57 EELIRAVVEAVNG-RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred HHHHHHHHHHhCC-CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4555555555432 2444433333333 334446688899999999766533322211223456677788999999975
Q ss_pred CC
Q 031195 159 PS 160 (164)
Q Consensus 159 ~~ 160 (164)
+.
T Consensus 136 P~ 137 (292)
T PRK03170 136 PG 137 (292)
T ss_pred cc
Confidence 43
No 137
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=75.84 E-value=27 Score=25.99 Aligned_cols=79 Identities=10% Similarity=-0.009 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~ 157 (164)
.+..+...+.+. .++.+-.-+...+. .-...+.+++.++|-+++-.+.......--.-..-..|...+ +.||+++.
T Consensus 64 ~~v~~~~~~~~~-grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn 142 (309)
T cd00952 64 QAFVATVVETVA-GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYA 142 (309)
T ss_pred HHHHHHHHHHhC-CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEc
Confidence 444455555443 23444444433334 344456788899998888765432221111112345677788 59999997
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
.+.
T Consensus 143 ~P~ 145 (309)
T cd00952 143 NPE 145 (309)
T ss_pred Cch
Confidence 554
No 138
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=75.80 E-value=23 Score=28.97 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-Chh---HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DAR---ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~---~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+++.+.+...|++++..+..- ... ..+.+.++..+++.+|.+....+.+ ..-+.-.+++||+=|
T Consensus 423 ~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l--------~~~~a~~t~~pvi~v 494 (577)
T PLN02948 423 LPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHL--------PGMVASMTPLPVIGV 494 (577)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccc--------hHHHhhccCCCEEEc
Confidence 4667778888888899988877773 333 3444445667889888876655443 344566788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 495 p~~~ 498 (577)
T PLN02948 495 PVKT 498 (577)
T ss_pred CCCC
Confidence 9753
No 139
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=75.67 E-value=31 Score=25.76 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+.+.+.|++++... + .++....+..++|.+++|...- ++.-........--+.++.+.||+++=+
T Consensus 170 ~a~~L~~~gI~vtlI~--D---sa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 170 TAWELMQDGIDVTLIT--D---SMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAP 239 (303)
T ss_pred HHHHHHHCCCCEEEEC--h---hHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecc
Confidence 3445556788887643 2 2333444545699999998763 3333333333444455778899999843
No 140
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=75.65 E-value=8.7 Score=23.57 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
.-++.++.+...|.+++...... .++.++.. ++|++.+|..-+-. + ...++++.....||-+++...+
T Consensus 17 LV~Km~~aA~~kg~~~~I~A~s~---~e~~~~~~--~~DvvLlGPQv~y~-----~-~~~~~~~~~~giPV~vI~~~dY 84 (102)
T COG1440 17 LVTKMKKAAESKGKDVTIEAYSE---TELSEYID--NADVVLLGPQVRYM-----L-KQLKEAAEEKGIPVEVIDMLDY 84 (102)
T ss_pred HHHHHHHHHHhCCCceEEEEech---hHHHHhhh--cCCEEEEChHHHHH-----H-HHHHHHhcccCCCeEEeCHHHc
Confidence 44566777777888777654443 23334444 59999999653322 2 2356778888899999986544
No 141
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=75.54 E-value=29 Score=25.37 Aligned_cols=50 Identities=8% Similarity=0.175 Sum_probs=28.5
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHH---HHHHhhCCCCEEEEeccCCccc
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERL---LEAIEDLKLDSLVMGSRGLGTV 133 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I---~~~a~~~~~dlivlg~~~~~~~ 133 (164)
.+++..+++..++.+...-...++...+ ++.+...++|+|++-+.++...
T Consensus 116 ~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~ 168 (272)
T TIGR00064 116 IEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQN 168 (272)
T ss_pred HHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence 3455556665554433211122454433 3455667899999998887653
No 142
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=75.36 E-value=32 Score=25.77 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=27.1
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|+++|.-.|--++..+.+. .+.+++++|+....
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCCC
Confidence 68999999987777665555442 45689999997554
No 143
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=75.32 E-value=22 Score=25.99 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.+.. ++.+-.-+...+. .-+..+.+++.++|.+++..+.......--.-.....|...++.||++...
T Consensus 56 ~~l~~~~~~~~~~-~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 56 EAVIEAVVEAVNG-RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HHHHHHHHHHhCC-CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4555555555432 2333222222233 334446688899999998866443222111123456677788999999975
Q ss_pred CC
Q 031195 159 PS 160 (164)
Q Consensus 159 ~~ 160 (164)
+.
T Consensus 135 P~ 136 (284)
T cd00950 135 PG 136 (284)
T ss_pred hh
Confidence 43
No 144
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=74.99 E-value=30 Score=28.38 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=29.3
Q ss_pred cCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 94 KEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 94 ~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+...-..+..|...-.-+++|++.+.|+||+..|.
T Consensus 126 ~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 126 RGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred cCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 355666667778888888999999999999998774
No 145
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=74.87 E-value=26 Score=24.52 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHHHHh-hhcCCceEEEEecCC------------hhHHHHHHHhhCCC-CEEEEeccCCcccchhcc-cchhHHHh
Q 031195 82 DALDLLDTAS-RQKEANIVAKIYWGD------------ARERLLEAIEDLKL-DSLVMGSRGLGTVRRIIL-GSVSNYVM 146 (164)
Q Consensus 82 ~~l~~~~~~~-~~~~~~~~~~~~~g~------------~~~~I~~~a~~~~~-dlivlg~~~~~~~~~~~~-~s~~~~i~ 146 (164)
..++.+.+.+ ...+.+++...+..+ ..+.|++..+..+. |.|++...-.......++ +-+.+.+.
T Consensus 110 ~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~ 189 (204)
T PF04459_consen 110 PFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEELE 189 (204)
T ss_pred HHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHHH
Confidence 4444444444 223666666554432 27778777765433 899997554333233343 66788999
Q ss_pred hcCCccEEEEeCCC
Q 031195 147 THAPCPVTIVKDPS 160 (164)
Q Consensus 147 ~~~~~pVliv~~~~ 160 (164)
+..++||.+++...
T Consensus 190 ~~lg~~v~vv~~~~ 203 (204)
T PF04459_consen 190 ERLGVPVIVVRGPG 203 (204)
T ss_pred HHhCCcEEEeCCCC
Confidence 99999999998654
No 146
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=74.80 E-value=28 Score=27.88 Aligned_cols=72 Identities=4% Similarity=-0.069 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhcC-CceEEEEec-CChhHHHHHHHhh----CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 83 ALDLLDTASRQKE-ANIVAKIYW-GDARERLLEAIED----LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 83 ~l~~~~~~~~~~~-~~~~~~~~~-g~~~~~I~~~a~~----~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.-+.+.+.+...+ +.++..... -+-.+.+.+.+++ .++|.||+-.+..+... ..-.+++..++|||+.
T Consensus 24 ~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~------~~i~~~~~l~~PvL~~ 97 (484)
T cd03557 24 HSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPAK------MWIAGLTALQKPLLHL 97 (484)
T ss_pred HHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchHH------HHHHHHHHcCCCEEEE
Confidence 3344444444432 444443322 1445555566665 45999999877655432 3455688999999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
..+.
T Consensus 98 ~~q~ 101 (484)
T cd03557 98 HTQF 101 (484)
T ss_pred ccCC
Confidence 7654
No 147
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=74.11 E-value=23 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=30.4
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
+-.+.|++.++..++|+|++|-....- +. ...+.....+.+|++.
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~PkQ--E~----~~~~~~~~l~~~v~i~ 132 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGAPKQ--ER----WIARHRQRLPAGVIIG 132 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCCHH--HH----HHHHHHHHCCCCEEEE
Confidence 568899999999999999998543321 11 1345556666665543
No 148
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=74.08 E-value=13 Score=24.18 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=34.2
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..+.-.++..|.++.+ ....-+.+.+.+.+.+.++|+|.+......
T Consensus 21 ~iv~~~lr~~G~eVi~-LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 21 KILDRALTEAGFEVIN-LGVMTSQEEFIDAAIETDADAILVSSLYGH 66 (137)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcCcccc
Confidence 3455666777776654 444568999999999999999999865443
No 149
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=74.00 E-value=39 Score=26.20 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.-++|++++.|+..+..++++.-.|. ..+..+.++-
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~-~~g~~V~vv~ 37 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELV-RQGAEVKVIM 37 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEE
Confidence 35799999999999999888888774 4467765443
No 150
>PRK13055 putative lipid kinase; Reviewed
Probab=73.74 E-value=36 Score=25.62 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec--CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW--GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~ 157 (164)
.+.+.++.+.+.+.+++++..... +.-+..+.+.+.+.++|.||+. .|.+.+.. +++.+... ...|+-|+|
T Consensus 19 ~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTl~e-----vvngl~~~~~~~~LgiiP 92 (334)
T PRK13055 19 KKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAA-GGDGTINE-----VVNGIAPLEKRPKMAIIP 92 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEE-CCCCHHHH-----HHHHHhhcCCCCcEEEEC
Confidence 355667778888888877754443 2345666666666778887765 34444433 33444432 236777777
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
-
T Consensus 93 ~ 93 (334)
T PRK13055 93 A 93 (334)
T ss_pred C
Confidence 4
No 151
>PRK05920 aromatic acid decarboxylase; Validated
Probab=73.68 E-value=7.3 Score=27.23 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=27.9
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
+.++|++++.|+-.+.++++..-.|.+. +..++++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~-g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA-DYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 4699999999999998888888877554 66655544
No 152
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=73.66 E-value=15 Score=27.12 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=50.6
Q ss_pred HHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccch--hcccchhHHHhhcCCccEEEEeCCC
Q 031195 85 DLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRR--IILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~--~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+++.+.+.+.+.-+=..-..+ ...++|++.|++.+...|+=.+.+...... ..+-.....+..+.++||.+--++.
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg 85 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHG 85 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 334445555555444333344 789999999999999999988876543322 2333466778888899998865443
No 153
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=73.51 E-value=31 Score=26.09 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCCh----hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDA----RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
...+++.+.+.+.++.+.+....+++ .+.+.+.+++.++|.||- -.|.+... ++..+....+.|++.||
T Consensus 36 ~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa-vGGGS~iD------~aK~ia~~~~~P~iaIP 108 (351)
T cd08170 36 LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIG-IGGGKTLD------TAKAVADYLGAPVVIVP 108 (351)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEE-ecCchhhH------HHHHHHHHcCCCEEEeC
Confidence 45667777777777776544444543 556667778889997553 22222221 23333333468999988
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 109 TTa 111 (351)
T cd08170 109 TIA 111 (351)
T ss_pred Ccc
Confidence 643
No 154
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=73.44 E-value=23 Score=23.87 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+++.+++.++|+|++|-.... .+.+ +.+.....+.+|++.
T Consensus 87 ~~~~i~~~I~~~~pdiv~vglG~Pk--QE~~----~~~~~~~l~~~v~~~ 130 (171)
T cd06533 87 EEEEIIERINASGADILFVGLGAPK--QELW----IARHKDRLPVPVAIG 130 (171)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCH--HHHH----HHHHHHHCCCCEEEE
Confidence 3555899999999999999854322 1222 344555556666653
No 155
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=73.42 E-value=31 Score=24.72 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=39.0
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
.....|.+.+.+.+.|.|.+|.+..-..+. ...+.++|-.+.+.||++.|....
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~--~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEEN--VDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHH--HHHHHHHHHhhcCCCEEEecCChh
Confidence 467899999999999999999654322221 233556666688899999997553
No 156
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=73.21 E-value=36 Score=25.36 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+.+.+.+.|++++... ++..-. ..++ +|.+++|...- |+.-........--+.++.++||+++=+
T Consensus 158 ~a~~L~~~gI~vtlI~--Dsa~~~---~m~~--vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 158 TAKELRDYGIPVTLIV--DSAVRY---FMKE--VDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAE 225 (301)
T ss_pred HHHHHHHCCCCEEEEe--hhHHHH---HHHh--CCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcc
Confidence 4555667788888643 332222 3444 99999998763 3333333333444456777899999843
No 157
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=73.12 E-value=36 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=25.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+|+|++.|.-.|.-++..+.+. .+.++.++|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 5889999988887666655542 4567999998554
No 158
>PRK00074 guaA GMP synthase; Reviewed
Probab=72.98 E-value=48 Score=26.74 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=27.8
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.++++|++.|.-.|.-++..+.+. .+.++.++|+...
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd~g 251 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVDHG 251 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEeCC
Confidence 368999999998887766666553 3567999998544
No 159
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=72.96 E-value=21 Score=25.91 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
...-..+.+.+...|+.+..+..-||..+.|.+..+. .++|+||+. .|.++... .=+.+.+.+..+.|+.+
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~t-GGLGPT~D---DiT~e~vAka~g~~lv~ 92 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITT-GGLGPTHD---DLTAEAVAKALGRPLVL 92 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEEC-CCcCCCcc---HhHHHHHHHHhCCCccc
Confidence 3455678889999999999988888776666665322 349998885 34443322 11455555555666543
No 160
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=72.89 E-value=12 Score=21.10 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=35.3
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
+.||+|.+.=........|++-|+.-|...=..|..+.|++...
T Consensus 4 hvYK~IelvGtSp~S~d~Ai~~Ai~RA~~t~~~l~wfeV~~~rg 47 (71)
T COG3360 4 HVYKKIELVGTSPTSIDAAIANAIARAADTLDNLDWFEVVETRG 47 (71)
T ss_pred ceEEEEEEEecCCccHHHHHHHHHHHHHhhhhcceEEEEEeecc
Confidence 35888888766666678899999998888888888888888664
No 161
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=72.85 E-value=23 Score=24.45 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=40.3
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH 148 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~ 148 (164)
.-+...++..|.++.. +..+-+.+.+++.+++.++|+|.+.......... .....+.+-..
T Consensus 102 ~~v~~~l~~~G~~vi~-LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~--~~~~i~~l~~~ 162 (197)
T TIGR02370 102 NIVVTMLRANGFDVID-LGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYG--QKDINDKLKEE 162 (197)
T ss_pred HHHHHHHHhCCcEEEE-CCCCCCHHHHHHHHHHcCCCEEEEccccccCHHH--HHHHHHHHHHc
Confidence 3455666777766654 3445789999999999999999998765444433 23344444333
No 162
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=72.75 E-value=16 Score=28.56 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=27.8
Q ss_pred CceEEEEecCChhHHHHHH--HhhCCCCEEEEe-ccCCcccchhcccchhH
Q 031195 96 ANIVAKIYWGDARERLLEA--IEDLKLDSLVMG-SRGLGTVRRIILGSVSN 143 (164)
Q Consensus 96 ~~~~~~~~~g~~~~~I~~~--a~~~~~dlivlg-~~~~~~~~~~~~~s~~~ 143 (164)
.-+.+.+..|++.+.|.+. |.++++|.|.+= +.+.+.+.....|.+++
T Consensus 147 P~iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT~e 197 (509)
T PF09043_consen 147 PVIYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGATTE 197 (509)
T ss_dssp SEEEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S--S-
T ss_pred CeEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCCCCC
Confidence 3455567779999999887 888999998664 55666666555554443
No 163
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=72.69 E-value=29 Score=25.39 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.++.+.+.+.. .+.+-.-+...+..+ ...+.+++.++|-+++..+.......--.-..-..|...++.||++...
T Consensus 54 ~~~~~~~~~~~~~-~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 54 KKVIEFVVDLVNG-RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred HHHHHHHHHHhCC-CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4445555554432 233333222223333 3446688899999999865443322111112345577788999999976
Q ss_pred CC
Q 031195 159 PS 160 (164)
Q Consensus 159 ~~ 160 (164)
+.
T Consensus 133 P~ 134 (285)
T TIGR00674 133 PS 134 (285)
T ss_pred cH
Confidence 53
No 164
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=72.17 E-value=9.2 Score=28.59 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=35.4
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc-c-cchhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG-T-VRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~-~-~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+....+++.++ +|+||+|....- . ...++...+.+ .++++++|++.|.+-
T Consensus 161 ~a~~~al~AI~~--ADlIvlgPGSlyTSIiPnLlv~gI~e-AI~~s~a~kV~v~N~ 213 (310)
T TIGR01826 161 PALREAVEAIRE--ADLIILGPGSLYTSIIPNLLVPEIAE-ALRESKAPKVYVCNL 213 (310)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHHhchhcCchhHHH-HHHhCCCCEEEEeCC
Confidence 567788888988 999999954422 2 22344555555 456788999988764
No 165
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=72.16 E-value=26 Score=23.30 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
..+..++.+.+.|+..+....++...+.+..-. .+. ..... -..+++-.+.++..|
T Consensus 20 GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~------~~~-----------------~~~~~-l~s~~ek~~~l~~~G 75 (157)
T PF06574_consen 20 GHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVL------NPD-----------------KPPKL-LTSLEEKLELLESLG 75 (157)
T ss_dssp HHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHH------SCT-----------------CCGGB-SS-HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhcccceEEEEcccCHHHHh------cCC-----------------CcccC-CCCHHHHHHHHHHcC
Confidence 468999999999999999888888776653110 000 00000 111222334445556
Q ss_pred CceEEEEec-----C-ChhHHHHHHHh-hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 96 ANIVAKIYW-----G-DARERLLEAIE-DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 96 ~~~~~~~~~-----g-~~~~~I~~~a~-~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+..-..+.. . ++.+-|-.+.. ..++.-||+|..-+=+-.+.---.....+.+.....|.++++-
T Consensus 76 vd~~~~~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~ 146 (157)
T PF06574_consen 76 VDYVIVIPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPV 146 (157)
T ss_dssp ESEEEEE-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---
T ss_pred CCEEEEecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCE
Confidence 655444322 2 44555555565 8999999999653322222111112333334445788888764
No 166
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=72.01 E-value=37 Score=25.02 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~ 157 (164)
.+..+...+.... .+.+-..+...+. .-+..+.+++.++|.+++..+.......--.-..-..+...+ +.||+++.
T Consensus 57 ~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn 135 (290)
T TIGR00683 57 KEIFRIAKDEAKD-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYS 135 (290)
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3444444554432 2343333333333 344556788999999999765433222111112234566666 69999997
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
.+.
T Consensus 136 ~P~ 138 (290)
T TIGR00683 136 IPF 138 (290)
T ss_pred Ccc
Confidence 654
No 167
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=71.89 E-value=9.6 Score=28.34 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=30.6
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccC-Ccccch-hcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRG-LGTVRR-IILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~-~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+...+++..++ +|+||+|... .+..-. +....+ ...++++++|++.|.+-
T Consensus 172 ~~~p~~l~AI~~--AD~IiigPgs~~TSI~P~L~v~gi-~~Ai~~s~a~kV~V~ni 224 (300)
T PF01933_consen 172 KANPEALEAIEE--ADLIIIGPGSLYTSIIPNLLVPGI-REAIRESKAPKVYVSNI 224 (300)
T ss_dssp -B-HHHHHHHHH---SEEEE-SS-CCCCCHHHHTSHHH-HHHHHHSSSEEEEE-SS
T ss_pred CCCHHHHHHHHh--CCEEEEcCCCchhhhcccccchhH-HHHHHhCCCCEEEEcCC
Confidence 467888999999 9999999543 223333 334444 44667777999988763
No 168
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=71.81 E-value=42 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=24.1
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
++|+|++++.-.|.-++..+.+ .+..+..+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 4799999998777765554444 35688888884
No 169
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=71.67 E-value=23 Score=25.67 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=39.9
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.+.+.+.|++++... ++ ++..+..+ +|.+++|...- |+.-.........-+.++.++||+++-.
T Consensus 125 ~~a~~L~~~GI~vtli~--Ds---a~~~~m~~--vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 125 DMAKLLVKSGIDVVLLT--DA---SMCEAVLN--VDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHHHCCCCEEEEe--hh---HHHHHHHh--CCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEee
Confidence 35556666788886533 22 22233444 99999998763 3333333333444455788899999754
No 170
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=71.67 E-value=9.9 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=27.4
Q ss_pred CCCceEEEEeCCCccHHH-HHHHHHHhcCCCCCeEEEEE
Q 031195 2 AGDRKIGVALDFSPSSKF-ALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~-al~~a~~la~~~~~~l~ll~ 39 (164)
+.-++|++++.|+-.+.+ +.+.+-.+. ..|..++++-
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~-k~G~~V~vv~ 40 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLV-DEGAEVTPIV 40 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHH-hCcCEEEEEE
Confidence 467899999999999988 577776664 4466665544
No 171
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=71.65 E-value=18 Score=21.28 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=36.0
Q ss_pred HhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 90 ASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
++.+.|+++++.+.. ++-...+.+..++.++|+||--....+.... --+....+..-..++|++
T Consensus 25 ~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~-~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 25 FLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPH-EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceec-cCcHHHHHHHHHcCCCee
Confidence 344567877643322 2223469999999999999987553121111 123344555555556553
No 172
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=71.41 E-value=43 Score=25.53 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...+.+.|++++... ++. +-...++.++|.+++|..+- +..-.........-+.++.++|++++=+.
T Consensus 199 a~eL~~~GI~vtlI~--Dsa---~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~ 268 (344)
T PRK05720 199 AWELYQAGIDVTVIT--DNM---AAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPS 268 (344)
T ss_pred HHHHHHCCCCEEEEc--ccH---HHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccc
Confidence 445566788887643 322 33445556799999998763 33333333333444567888999998553
No 173
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=71.22 E-value=34 Score=25.29 Aligned_cols=79 Identities=13% Similarity=-0.018 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHH--HHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARER--LLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~ 157 (164)
.+.++.+.+.... ++.+-..+...+..++ ..+.+++.++|.+++..+.......--.-..-..|...+ +.||+++.
T Consensus 56 ~~l~~~~~~~~~g-~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 56 KQAIENAIDQIAG-RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred HHHHHHHHHHhCC-CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 3444444444332 2444333333344444 557788999999999876544332211222345677788 79999997
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
.+.
T Consensus 135 ~P~ 137 (294)
T TIGR02313 135 IPG 137 (294)
T ss_pred Cch
Confidence 554
No 174
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.13 E-value=17 Score=22.90 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.-+...++..|.++.. .....+.+.+++.+.+.++|.|++......
T Consensus 17 ~~~~~~l~~~G~~vi~-lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~ 62 (122)
T cd02071 17 KVIARALRDAGFEVIY-TGLRQTPEEIVEAAIQEDVDVIGLSSLSGG 62 (122)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcccchh
Confidence 3455567777766654 333478899999999999999999876543
No 175
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=71.03 E-value=47 Score=25.77 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=65.0
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcc--hhhhHhhcc-
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFRE--PETMEKYNV- 77 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~- 77 (164)
|+..++|++++.+.-..--++.|..+ ..+..++.+.+.-.++ .+++.. +...+-...
T Consensus 1 ~~~~kkvvLAYSGGLDTSv~i~wL~e---~~~~eVia~tadvGQ~-----------------eed~~~i~eKA~~~Ga~~ 60 (403)
T COG0137 1 MMKVKKVVLAYSGGLDTSVAIKWLKE---KGGAEVIAVTADVGQP-----------------EEDLDAIREKALELGAEE 60 (403)
T ss_pred CCCCcEEEEEecCCccHHHHHHHHHH---hcCceEEEEEEeCCCC-----------------hHHhHHHHHHHHHhCCce
Confidence 67789999999999888888887664 3557777776644432 011110 111111111
Q ss_pred cchHHHHHHHHH----HhhhcCCceEEEEecC------ChhHHHHHHHhhCCCCEEEEeccCCcccch
Q 031195 78 KTDIDALDLLDT----ASRQKEANIVAKIYWG------DARERLLEAIEDLKLDSLVMGSRGLGTVRR 135 (164)
Q Consensus 78 ~~~~~~l~~~~~----~~~~~~~~~~~~~~~g------~~~~~I~~~a~~~~~dlivlg~~~~~~~~~ 135 (164)
-....+.++|.+ ..-..+..++..-.-| =+++.+++.|++.+++.|.-|+.+++.-.-
T Consensus 61 ~~viD~reeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 61 AYVIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred EEEeecHHHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 111122233321 1112222333211112 248999999999999999999999886543
No 176
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=70.69 E-value=18 Score=23.45 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
+.+...++..|.++.. ....-+.+.+++.|.++++|+|.+++.-.
T Consensus 19 ~iv~~~l~~~GfeVi~-LG~~v~~e~~v~aa~~~~adiVglS~l~~ 63 (134)
T TIGR01501 19 KILDHAFTNAGFNVVN-LGVLSPQEEFIKAAIETKADAILVSSLYG 63 (134)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEecccc
Confidence 3455566666665543 32346789999999999999999976543
No 177
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=70.62 E-value=21 Score=23.03 Aligned_cols=60 Identities=8% Similarity=0.027 Sum_probs=37.8
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT 147 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~ 147 (164)
+.+..+++..|.++... ......+++++.+.+.++|.+++.+...+.... ...+.+.+-.
T Consensus 20 ~iv~~~l~~~GfeVi~l-g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~--~~~~~~~L~~ 79 (132)
T TIGR00640 20 KVIATAYADLGFDVDVG-PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTL--VPALRKELDK 79 (132)
T ss_pred HHHHHHHHhCCcEEEEC-CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHH--HHHHHHHHHh
Confidence 44556666666665431 112567899999999999999998765443332 3445555544
No 178
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.57 E-value=27 Score=26.37 Aligned_cols=70 Identities=20% Similarity=0.159 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhcCCceEEE-EecCCh----hHHHHHHHhhCCCCEEE-EeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 83 ALDLLDTASRQKEANIVAK-IYWGDA----RERLLEAIEDLKLDSLV-MGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~-~~~g~~----~~~I~~~a~~~~~dliv-lg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
..+++.+.++..++.+... ...+++ .+.+.+.+++.++|.|| +|...-. +++..+......|++.|
T Consensus 37 ~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~--------D~aK~ia~~~~~p~i~V 108 (345)
T cd08171 37 AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAI--------DTVKVLADKLGKPVFTF 108 (345)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHH--------HHHHHHHHHcCCCEEEe
Confidence 3566667777777765532 233433 45666777888999987 5522111 12333333346899999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 109 PTt~ 112 (345)
T cd08171 109 PTIA 112 (345)
T ss_pred cCcc
Confidence 8643
No 179
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=70.53 E-value=39 Score=24.63 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=35.3
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC---CcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG---LGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~---~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+.+.+.+.|++++..... ++..+.+. ++|.+++|... .|..-........--+.++.++||+++=+
T Consensus 150 ~a~~L~~~gi~v~~i~d~-----~~~~~m~~-~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 150 MAKELAEAGIPVTLIPDS-----AVGYVMPR-DVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAE 218 (282)
T ss_dssp HHHHHHHTT-EEEEE-GG-----GHHHHHHC-TESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--
T ss_pred HHHHhhhcceeEEEEech-----HHHHHHHH-hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcc
Confidence 334445567777764432 23344444 79999999875 33333333333444566778899999843
No 180
>PRK14974 cell division protein FtsY; Provisional
Probab=70.45 E-value=45 Score=25.33 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhH---HHHHHHhhCCCCEEEEeccCCccc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARE---RLLEAIEDLKLDSLVMGSRGLGTV 133 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~---~I~~~a~~~~~dlivlg~~~~~~~ 133 (164)
...+++...+...|+.+......+++.. ..+++++..++|+|++-+.++...
T Consensus 182 ~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 182 GAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHT 236 (336)
T ss_pred HHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCC
Confidence 3445556666666766553222235543 344556667899999988877643
No 181
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=70.22 E-value=30 Score=23.20 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=27.4
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+++|++.|.-.|.-++.++.+ .+..++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 589999998888877776665 37789999987654
No 182
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.06 E-value=50 Score=25.77 Aligned_cols=51 Identities=6% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
.+++...+...++.+.......+..++|.......++|+|++.+.|+....
T Consensus 250 veQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 250 VEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred HHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccC
Confidence 445666666666665532111223333333333356899999888876543
No 183
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=69.96 E-value=19 Score=23.12 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=30.3
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+...++..|.++-. ....-+.+.+++.|.++++|+|.+.+--.+
T Consensus 19 v~~~L~~~GfeVid-LG~~v~~e~~v~aa~~~~adiVglS~L~t~ 62 (128)
T cd02072 19 LDHAFTEAGFNVVN-LGVLSPQEEFIDAAIETDADAILVSSLYGH 62 (128)
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccC
Confidence 44455666655432 222467899999999999999999764333
No 184
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=69.84 E-value=35 Score=23.91 Aligned_cols=95 Identities=8% Similarity=0.058 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
....+.++.++++...+.++.++-.-.... ....+.+.+.+.+.|
T Consensus 13 ~~~~i~~~~~~~ag~~~~~i~~iptA~~~~-----------------------------------~~~~~~~~~~~~~lG 57 (217)
T cd03145 13 DNRAILQRFVARAGGAGARIVVIPAASEEP-----------------------------------AEVGEEYRDVFERLG 57 (217)
T ss_pred CHHHHHHHHHHHcCCCCCcEEEEeCCCcCh-----------------------------------hHHHHHHHHHHHHcC
Confidence 567788888888875566664443211110 222344445555556
Q ss_pred Cc-eEEEEec---CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh
Q 031195 96 AN-IVAKIYW---GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT 147 (164)
Q Consensus 96 ~~-~~~~~~~---g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~ 147 (164)
.. +...... ......+.+...+ +|.|+++......+...+.++-..+.++
T Consensus 58 ~~~v~~~~~~~~~~a~~~~~~~~l~~--ad~I~~~GG~~~~~~~~l~~t~l~~~l~ 111 (217)
T cd03145 58 AREVEVLVIDSREAANDPEVVARLRD--ADGIFFTGGDQLRITSALGGTPLLDALR 111 (217)
T ss_pred CceeEEeccCChHHcCCHHHHHHHHh--CCEEEEeCCcHHHHHHHHcCChHHHHHH
Confidence 53 3332222 1234566777777 9999998665554444444444444433
No 185
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=69.74 E-value=15 Score=24.11 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=38.4
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCc----ccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLG----TVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~----~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
..+.|.+.+++++++.||+|-+-.. .......-.+++.|-++.+.||.++-++
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 5788889999999999999966522 2222223456777888888999988654
No 186
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=69.70 E-value=21 Score=26.35 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=41.8
Q ss_pred EecCChhHHHHHHHhhCCCCEEEEeccCCcccchh-cccchhHHHhhcCCccEEEEeCC
Q 031195 102 IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRI-ILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 102 ~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~-~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+..-....++++.|++.+..+|+..+.+.-...+. .+......+.++.++||.+-=++
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDH 83 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH 83 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 33347899999999999999999876654322221 34557788889999998875444
No 187
>PRK06801 hypothetical protein; Provisional
Probab=69.55 E-value=24 Score=26.05 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=48.1
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEeCC
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.+.+.+.-+=..-.. -....++++.|++.+..+|+..+.+.....+ ..+......+.+++++||.+-=++
T Consensus 11 ~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH 83 (286)
T PRK06801 11 AHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDH 83 (286)
T ss_pred HHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3444444433332233 3789999999999999999988766543322 335667888899999998775444
No 188
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=69.41 E-value=43 Score=24.70 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-C-------------ChhHHHHHHHhhCCCCEEEE--ecc-CCcccchhcccchhHH
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-G-------------DARERLLEAIEDLKLDSLVM--GSR-GLGTVRRIILGSVSNY 144 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g-------------~~~~~I~~~a~~~~~dlivl--g~~-~~~~~~~~~~~s~~~~ 144 (164)
+.-.++.+.++..|+.++..... | .-.++..+++++.++|.|-+ |+- +...-...+--.....
T Consensus 115 ~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~ 194 (281)
T PRK06806 115 QKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQE 194 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHH
Confidence 44456777888888877755432 2 23456677777789999999 753 2221111122235567
Q ss_pred HhhcCCccEEEEe
Q 031195 145 VMTHAPCPVTIVK 157 (164)
Q Consensus 145 i~~~~~~pVliv~ 157 (164)
+-+..++|++..-
T Consensus 195 i~~~~~iPlV~hG 207 (281)
T PRK06806 195 INDVVHIPLVLHG 207 (281)
T ss_pred HHHhcCCCEEEEC
Confidence 7778889988765
No 189
>PRK13054 lipid kinase; Reviewed
Probab=69.32 E-value=43 Score=24.69 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=39.7
Q ss_pred HHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
...+.+.+.+.+.+++..... ..-+..+.+.+...++|.||+. .|.+.+.+ +++.++.. ..+|+-++|-
T Consensus 20 ~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~-GGDGTl~e-----vv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 20 LREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAG-GGDGTINE-----VATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEE-CCccHHHH-----HHHHHHhhccCCCCcEEEEeC
Confidence 344555677777776654333 2335566666656678877765 44444443 34555432 2478888884
No 190
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=69.26 E-value=46 Score=25.00 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=29.9
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHH---HHHHhhCCCCEEEEeccCCcccc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERL---LEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I---~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
+++..+....++.+.......++...+ +..+...++|+|++-+.++....
T Consensus 159 eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~ 211 (318)
T PRK10416 159 EQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNK 211 (318)
T ss_pred HHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCC
Confidence 444455555566655432223554332 34556788999999998876543
No 191
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=69.07 E-value=26 Score=26.16 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=33.3
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccC-Ccccch-hcccchhHHHhhcCCccEEEEeC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRG-LGTVRR-IILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~-~~~~~~-~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..++++...+ +|+||+|... ....-. +....+.+ .+++++.|++.|-|
T Consensus 172 ~~~p~vl~AI~~--AD~IVlGPgsp~TSI~P~LlVpgI~e-AL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIED--ADLVIIGPSNPVTSIGPILALPGIRE-ALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhccchhHHH-HHHhCCCCEEEEcC
Confidence 467888999999 9999999543 222322 33444444 56777888877754
No 192
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=69.06 E-value=23 Score=26.12 Aligned_cols=74 Identities=9% Similarity=0.100 Sum_probs=47.6
Q ss_pred HHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEeCCC
Q 031195 87 LDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+.+.+.+..+=.--.. -....++++.|++.+..+|+..+.+.....+ -.+......+.+++++||.+-=++.
T Consensus 9 ~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~ 84 (284)
T PRK12737 9 MLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHH 84 (284)
T ss_pred HHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 334444444433332333 3789999999999999999987664432111 1245567788889999998754443
No 193
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.76 E-value=23 Score=21.26 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.....+.+.+++.|.+..++-.. |.... .|...... +|+||+-+.--+.-. -..+....++.+.|++..+.
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~--aD~VIv~t~~vsH~~----~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKK--ADLVIVFTDYVSHNA----MWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCC--CCEEEEEeCCcChHH----HHHHHHHHHHcCCcEEEECC
Confidence 44566777788888888777111 22222 36666777 999998765433211 11356777888899999874
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 84 ~ 84 (97)
T PF10087_consen 84 R 84 (97)
T ss_pred C
Confidence 4
No 194
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=68.69 E-value=28 Score=24.44 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEE
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTI 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVli 155 (164)
.-+.-.++..|.++.. ...+-+.+.+++.+.+.++|+|.+...-...... ...+.+.+-... +++|++
T Consensus 106 ~iv~~~l~~~G~~Vi~-LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~--~~~~i~~L~~~~~~~~i~v 174 (213)
T cd02069 106 NLVGVILSNNGYEVID-LGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDE--MVEVAEEMNRRGIKIPLLI 174 (213)
T ss_pred HHHHHHHHhCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEccchhccHHH--HHHHHHHHHhcCCCCeEEE
Confidence 3455566666666554 3335689999999999999999998654443332 233444444333 355544
No 195
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=68.26 E-value=28 Score=25.62 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=47.5
Q ss_pred HHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEeCC
Q 031195 87 LDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.+.+.+.+.-+=.--..+ ...+++++.|++.+..+|+..+.+.-.... ..+........+++++||.+-=++
T Consensus 9 ~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH 83 (281)
T PRK06806 9 LLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDH 83 (281)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344444444444333334 789999999999999999987665432221 134556677888999998775443
No 196
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=68.20 E-value=40 Score=23.88 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
....+++++.+++.|..+.-.-+.-.+.+.|.+...+ +|.|.+|..
T Consensus 48 ~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~--~d~IyVgGG 93 (224)
T COG3340 48 DFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMK--ADIIYVGGG 93 (224)
T ss_pred HHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhh--ccEEEECCc
Confidence 4677889999999999888877777888999998888 999999843
No 197
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=67.85 E-value=42 Score=23.98 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
-+.+..+++.+...|+.++....+. +..+.|..++...-+|+|=+=++..++..
T Consensus 122 I~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ 176 (248)
T PF07476_consen 122 IEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGIN 176 (248)
T ss_dssp HHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTH
T ss_pred HHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchh
Confidence 4777888889999999999988775 99999999999999999999988887665
No 198
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=67.77 E-value=26 Score=25.82 Aligned_cols=72 Identities=10% Similarity=0.082 Sum_probs=47.0
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEeCCC
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+.+.+.-+=..-.. -...+++++.|++.+..+|+..+.+.-.... ..+......+.+++++||.+-=++.
T Consensus 9 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg 82 (282)
T TIGR01858 9 QDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHH 82 (282)
T ss_pred HHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344444433332233 3789999999999999999987765432211 2245677888999999998754443
No 199
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=67.73 E-value=27 Score=25.84 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=46.8
Q ss_pred HHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEeCCC
Q 031195 88 DTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
.+.+.+.+.-+=..-.. -....++++.|++.+..+|+..+.+.....+ -.+......+.+++++||.+-=++.
T Consensus 10 L~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~ 84 (284)
T PRK12857 10 LKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHG 84 (284)
T ss_pred HHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 34444444433332333 3789999999999999999988765432211 1244566778889999998754443
No 200
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=67.65 E-value=36 Score=25.03 Aligned_cols=76 Identities=11% Similarity=0.011 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+... .++.+-..+.. +. .-...+.+++.++|.+++..+.......--.-..-..|...++.||+++..
T Consensus 56 ~~l~~~~~~~~~-~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 56 AQVVRAAVEETA-GRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred HHHHHHHHHHhC-CCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 344444445443 23444443432 33 334456788999999999765443222111112345677788999999963
No 201
>PRK13337 putative lipid kinase; Reviewed
Probab=67.57 E-value=48 Score=24.52 Aligned_cols=71 Identities=17% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~ 158 (164)
+.++++.+.+.+.+.+++....+ ..-...+.+.+.+.++|.||+. .|.+.+.. +++.++.. ...|+-|+|.
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~-GGDGTl~~-----vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAA-GGDGTLNE-----VVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-cCCCHHHH-----HHHHHhhCCCCCcEEEECC
Confidence 34455666777777776654444 3445555555555667876664 34444433 33444332 2467888874
No 202
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=67.22 E-value=13 Score=27.78 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=35.1
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc-cc-chhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG-TV-RRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~-~~-~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+....+++..+ +|+||+|....- .. ..++...+.+ .++++++|++.+.+-
T Consensus 164 ~~~~~a~~AI~~--AD~Iv~gPGSlyTSI~P~Llv~gI~e-Ai~~s~a~kV~v~N~ 216 (308)
T cd07187 164 KANPEALEAIEE--ADLIVYGPGSLYTSILPNLLVKGIAE-AIRASKAPKVYICNL 216 (308)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhcCchhHHH-HHHhCCCCEEEEecC
Confidence 457788899988 999999954422 22 2344555555 457788998888764
No 203
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=67.18 E-value=39 Score=23.40 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=29.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.|++....+......++.+++-++..++.+.++++.+..
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~ 43 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKN 43 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCC
Confidence 344444435567888888888888889999999997764
No 204
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=67.16 E-value=44 Score=26.34 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEE-ecC--ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKI-YWG--DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~-~~g--~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
++..+++.+.+...++++...- ..+ +-...+.+.++..++|.||+-....+.. +..-.+++..++||+++-
T Consensus 22 ~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~------~~~~~~~~~~~~Pvll~a 95 (452)
T cd00578 22 EEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA------KMWIAGLSELRKPVLLLA 95 (452)
T ss_pred HHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH------HHHHHHHHhcCCCEEEEe
Confidence 4555555555555555443321 111 2255566777777999999975544432 223445677899999996
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 96 ~~~ 98 (452)
T cd00578 96 TQF 98 (452)
T ss_pred CCC
Confidence 543
No 205
>PRK02929 L-arabinose isomerase; Provisional
Probab=67.04 E-value=54 Score=26.42 Aligned_cols=69 Identities=1% Similarity=-0.032 Sum_probs=42.1
Q ss_pred HHHHHHHhhhc-CCceEEEEec-CChhHHHHHHHhhCC----CCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 84 LDLLDTASRQK-EANIVAKIYW-GDARERLLEAIEDLK----LDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 84 l~~~~~~~~~~-~~~~~~~~~~-g~~~~~I~~~a~~~~----~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
-+++.+.+... .+.++..... -+-.++|.+.+++.+ +|.||+-.+.-+... ..-.+++..++|||+..
T Consensus 31 ~~~i~~~l~~~~~~~~~vv~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~------~~i~~~~~l~~PvL~~~ 104 (499)
T PRK02929 31 AEEIVDGLNASGKLPVKIVLKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPAK------MWIRGLSALQKPLLHLH 104 (499)
T ss_pred HHHHHHHhcccCCCCeEEEEcCccCCHHHHHHHHHHccccCCCcEEEEccCCCchHH------HHHHHHHHcCCCEEEEe
Confidence 33444444432 2445543211 144556666666665 999999877655433 34556889999999997
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 105 ~ 105 (499)
T PRK02929 105 T 105 (499)
T ss_pred c
Confidence 6
No 206
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=66.89 E-value=25 Score=25.12 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=32.7
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
...+..++.+.+.+.|.+++|.+. . +.....+...+-+..+.||++.|....
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~-~---~~~~d~vv~~ik~~~~lPvilfPg~~~ 70 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSD-T---GVTLDNVVALIKRVTDLPVILFPGSPS 70 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-ST-H---CHHHHHHHHHHHHHSSS-EEEETSTCC
T ss_pred CCcHHHHHHHHhcCCCEEEECCCC-C---ccchHHHHHHHHhcCCCCEEEeCCChh
Confidence 456677778888999999999776 1 112333455555558899999986543
No 207
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=66.68 E-value=54 Score=24.85 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=19.3
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
....+.++|.++++.+|+.|.+..
T Consensus 148 ~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 148 IFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCHH
Confidence 356778889999999999997654
No 208
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=66.35 E-value=33 Score=24.88 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=34.8
Q ss_pred EEecCChhHHH-HHHHhhCCCCEEEEeccCCc-ccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 101 KIYWGDARERL-LEAIEDLKLDSLVMGSRGLG-TVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 101 ~~~~g~~~~~I-~~~a~~~~~dlivlg~~~~~-~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
....|....+. ....+++++|.||.=.+|.. ++... -......++||+++..+.
T Consensus 178 ia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eK------i~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 178 IAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEK------VKAAEALGINVIRIARPQ 233 (256)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHH------HHHHHHcCCcEEEEeCCC
Confidence 33446544444 34588899999998655553 33332 246678899999997554
No 209
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=66.29 E-value=28 Score=26.49 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=47.2
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCccc-chh---------------cccchhHHHhhcCCc
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTV-RRI---------------ILGSVSNYVMTHAPC 151 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~-~~~---------------~~~s~~~~i~~~~~~ 151 (164)
+.+++.+.-+=..-.. -...++|++.|++.+..+|+..+.+.... ... .+......+.+++++
T Consensus 9 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~V 88 (345)
T cd00946 9 DYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGV 88 (345)
T ss_pred HHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCC
Confidence 3444444443332333 47899999999999999999887653221 111 345667788889999
Q ss_pred cEEEEeCCC
Q 031195 152 PVTIVKDPS 160 (164)
Q Consensus 152 pVliv~~~~ 160 (164)
||.+-=++.
T Consensus 89 PValHLDHg 97 (345)
T cd00946 89 PVVLHTDHC 97 (345)
T ss_pred CEEEECCCC
Confidence 987754443
No 210
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=65.90 E-value=35 Score=24.20 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=38.1
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHH
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYV 145 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i 145 (164)
..+..++.|++.-..+.-+.+.+.+..+..+ +|+|.+-+-..+...+.|..++.++|
T Consensus 101 ~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~--vD~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 101 TIQLIKELGVKAGLVLNPATPLEALEPVLDD--VDLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred HHHHHHHcCCeEEEEECCCCCHHHHHHHHhh--CCEEEEEeECCCCcccccCHHHHHHH
Confidence 3344444466666555558899999999999 99988876655554555665555544
No 211
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=65.64 E-value=51 Score=24.20 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHhhhcCCceEEEEecCC----hhHHHHHHHhhCCCCEEEEecc
Q 031195 85 DLLDTASRQKEANIVAKIYWGD----ARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~----~~~~I~~~a~~~~~dlivlg~~ 128 (164)
..+++..+..|+.+........ ..+.+++..+++++|+||+..+
T Consensus 128 ~dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARY 175 (287)
T COG0788 128 DDLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARY 175 (287)
T ss_pred HHHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhh
Confidence 4566777788898887666532 3667888899999999999865
No 212
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=65.52 E-value=20 Score=20.43 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=26.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYII 38 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll 38 (164)
.++|.+++|.......+.+.+.+.....+..+..+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999988888877777666666665543
No 213
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=65.22 E-value=19 Score=25.23 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 111 LLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 111 I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+.+.+.+.|.+.+|.+..-.... ...+...+=+..+.||++.|...
T Consensus 16 ia~~v~~~gtDaI~VGGS~gvt~~~--~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGIVESN--LDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCCCHHH--HHHHHHHHHhhcCCCEEEECCCc
Confidence 4556677889999998552111111 22233443334789999988654
No 214
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=65.12 E-value=59 Score=24.68 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 89 TASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+.+.|++++... ++... ...+..++|.+++|..+- +..-.........-+.++.++|++++=+
T Consensus 200 ~~L~~~GI~vtlI~--Dsav~---~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 200 WELVQEGIPATLIT--DSMAA---HLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred HHHHHCCCCEEEEc--ccHHH---HHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 44556788887543 33332 334455799999998763 3333323233344455778899999844
No 215
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=65.05 E-value=44 Score=23.22 Aligned_cols=42 Identities=12% Similarity=-0.017 Sum_probs=27.0
Q ss_pred HHHHhhhcCCceEEEEec-----CChhHHHHHHHhhCCCCEEEEecc
Q 031195 87 LDTASRQKEANIVAKIYW-----GDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-----g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
..+.+.+.|+++...-.. .....++.+..+..++|++|+-..
T Consensus 43 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 43 GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHh
Confidence 456677778876542111 122457788888889999988543
No 216
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=65.03 E-value=67 Score=25.33 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=16.9
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
.....+++.+.+.+.+...+|+.+.
T Consensus 243 ~~~~~ll~~a~~~g~~~~wigs~~~ 267 (458)
T cd06375 243 EDARELLAAAKRLNASFTWVASDGW 267 (458)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeccc
Confidence 4566677777777777777776544
No 217
>PRK05370 argininosuccinate synthase; Validated
Probab=64.91 E-value=52 Score=26.05 Aligned_cols=112 Identities=21% Similarity=0.111 Sum_probs=60.9
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcc-cchHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNV-KTDID 82 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (164)
-++|++++++.-.+--++.|..+- +..|+.+++.--.+... ..+...+....--.. -....
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvGQ~~~e--------------d~~~i~~kA~~~GA~~~~viD 72 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQPDED--------------DYDAIPRRAMEYGAENARLID 72 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECCCCCcc--------------chHHHHHHHHHhCCCEEEEec
Confidence 478999999988888788877653 78899998865431000 000000011111110 01112
Q ss_pred HHHHHHHHh---hhcCCce------EEEEec--C--ChhHHHHHHHhhCCCCEEEEeccCCccc
Q 031195 83 ALDLLDTAS---RQKEANI------VAKIYW--G--DARERLLEAIEDLKLDSLVMGSRGLGTV 133 (164)
Q Consensus 83 ~l~~~~~~~---~~~~~~~------~~~~~~--g--~~~~~I~~~a~~~~~dlivlg~~~~~~~ 133 (164)
..+.|.+-+ -..+.-. .+-... + =.++.+++.|++.+++.|.-|+.+++.-
T Consensus 73 lr~eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGND 136 (447)
T PRK05370 73 CRAQLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGND 136 (447)
T ss_pred cHHHHHHHHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCc
Confidence 222222211 1122221 111111 2 2489999999999999999999987744
No 218
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=64.77 E-value=44 Score=24.63 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C------------ChhHHHHHHHhhCCCCEEEE--ec-cCCcccchhcccchhHH
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G------------DARERLLEAIEDLKLDSLVM--GS-RGLGTVRRIILGSVSNY 144 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g------------~~~~~I~~~a~~~~~dlivl--g~-~~~~~~~~~~~~s~~~~ 144 (164)
+.-.++.+.+...|+.++.++.. | .-.++..++.++.++|.|.+ |+ ++...-...+--.....
T Consensus 115 ~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~ 194 (282)
T TIGR01859 115 ALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKE 194 (282)
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHH
Confidence 44456677777888887766544 1 13456677787789999995 44 22111111122234566
Q ss_pred HhhcCCccEEEEe
Q 031195 145 VMTHAPCPVTIVK 157 (164)
Q Consensus 145 i~~~~~~pVliv~ 157 (164)
|-+..++|+...-
T Consensus 195 i~~~~~iPlv~hG 207 (282)
T TIGR01859 195 IKELTNIPLVLHG 207 (282)
T ss_pred HHHHhCCCEEEEC
Confidence 7777789987765
No 219
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=64.69 E-value=16 Score=27.53 Aligned_cols=50 Identities=22% Similarity=0.394 Sum_probs=35.2
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC--cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL--GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~--~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+.++..++ +|+||+|.... +-...++.+.+++.|.+ +..|++.+.+
T Consensus 178 ~a~~eaveAI~~--AD~IviGPgSl~TSIlP~Lllp~I~eaLr~-~~ap~i~v~n 229 (323)
T COG0391 178 SAAPEAVEAIKE--ADLIVIGPGSLFTSILPILLLPGIAEALRE-TVAPIVYVCN 229 (323)
T ss_pred CCCHHHHHHHHh--CCEEEEcCCccHhhhchhhchhHHHHHHHh-CCCCEEEecc
Confidence 457788899999 99999995442 22234556777775544 8888888765
No 220
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=64.03 E-value=27 Score=25.66 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=46.5
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEeCCC
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+.+.+..+=..-.. -...+++++.|++.+..+|+--+.+.-.... ..+......+..++++||.+-=++.
T Consensus 6 ~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~ 79 (276)
T cd00947 6 KKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHG 79 (276)
T ss_pred HHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344444433332333 3789999999999999999987665432222 2345567778888899998764443
No 221
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.87 E-value=67 Score=24.95 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=48.7
Q ss_pred eCCCccHHHHHHHHHHhcCC---CCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHH
Q 031195 11 LDFSPSSKFALSWAVNNLLD---KGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLL 87 (164)
Q Consensus 11 vd~s~~~~~al~~a~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (164)
..|...+-.+...|..+... .+.++.++++.... ....+++
T Consensus 182 ptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R------------------------------------~aa~eQL 225 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR------------------------------------IGAKKQI 225 (388)
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc------------------------------------HHHHHHH
Confidence 34445556666666665432 46688888875443 2444556
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHH-HhhCCCCEEEEeccCCccc
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEA-IEDLKLDSLVMGSRGLGTV 133 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~-a~~~~~dlivlg~~~~~~~ 133 (164)
..+++..|+++...- ..+++.+. .+..++|+|++.+.|++..
T Consensus 226 ~~~a~~lgvpv~~~~----~~~~l~~~L~~~~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 226 QTYGDIMGIPVKAIE----SFKDLKEEITQSKDFDLVLVDTIGKSPK 268 (388)
T ss_pred HHHhhcCCcceEeeC----cHHHHHHHHHHhCCCCEEEEcCCCCCcc
Confidence 667776777664322 22333332 2335799999998877653
No 222
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=63.41 E-value=64 Score=24.55 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=22.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
+|+|++.+.-.|..++..+.+ .+..++.+|+..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEec
Confidence 588999988777765544433 466788888754
No 223
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=63.35 E-value=31 Score=23.69 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=37.3
Q ss_pred HHHHHhhhcCCceEEEEec--CCh---hHHHHHHHhhCCCC-EEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 86 LLDTASRQKEANIVAKIYW--GDA---RERLLEAIEDLKLD-SLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~d-livlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+++.+.+.+..+++.... ..+ .+.+.+.+++...+ .+++|++ . .|-.+..+..+.++|-+++.|.
T Consensus 19 ~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSS-l-------GG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 19 ALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSS-L-------GGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEC-h-------HHHHHHHHHHHhCCCEEEEcCC
Confidence 3445555555555554433 233 34455566665543 8888866 2 2334566666777777777653
No 224
>PRK00211 sulfur relay protein TusC; Validated
Probab=63.22 E-value=29 Score=21.88 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=26.6
Q ss_pred CceEEEEeCCCcc----HHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 4 DRKIGVALDFSPS----SKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 4 ~~~iLv~vd~s~~----~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
|+++++.+..+|+ ++.+++.|+..+. ++..+.++..-+.-
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a-~~~~v~vff~~DgV 44 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSA-FTEDIGVFFIDDGV 44 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhc-ccCCeeEEEEhhhH
Confidence 5789999987776 4566666665443 34478877775543
No 225
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=63.16 E-value=33 Score=21.16 Aligned_cols=64 Identities=16% Similarity=-0.015 Sum_probs=37.1
Q ss_pred hhcCCceEEEEec-CChhHHHHHHHhh-CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 92 RQKEANIVAKIYW-GDARERLLEAIED-LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 92 ~~~~~~~~~~~~~-g~~~~~I~~~a~~-~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
++.|++++....- +.-...|.+..++ .++|+||--..+........-|....+..-..++|++.
T Consensus 39 ~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 39 ADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 3467877764332 1123578899999 99999988654333111111233445555555777764
No 226
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=62.56 E-value=43 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=18.8
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..+.|.+.+++.++|+|++|....+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g 95 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFG 95 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccc
Confidence 3667777788888999999876543
No 227
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=62.56 E-value=23 Score=24.74 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhC---CCCEEEEeccC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDL---KLDSLVMGSRG 129 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~---~~dlivlg~~~ 129 (164)
+..+..++.++..|..-...+..|+..+.+-+...+. .+|+|++-...
T Consensus 81 ~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 81 ERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 4455666777777765556677799988888887765 59999998654
No 228
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=62.49 E-value=33 Score=24.37 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+....+.|.+.|++.-. ..++...+++++..-+.+++.+|+.....+
T Consensus 99 qr~~~e~v~~~lgl~~~~-PLW~~~~~~ll~e~i~~G~~aiIv~v~a~g 146 (223)
T TIGR00290 99 QKTRIERVCRELGLKSFA-PLWHRDPEKLMEEFVEEKFEARIIAVAAEG 146 (223)
T ss_pred HHHHHHHHHHhcCCEEec-cccCCCHHHHHHHHHHcCCeEEEEEEecCC
Confidence 345666777777776655 667877778888888999999998876544
No 229
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=62.36 E-value=40 Score=21.77 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 15 PSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..+..+++++.+.++..+..+.++.+.+.
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 34678888888888777888888886554
No 230
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=62.23 E-value=59 Score=23.75 Aligned_cols=72 Identities=19% Similarity=0.316 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCC-hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC-ccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGD-ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP-CPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~-~pVliv~~ 158 (164)
.+..+++.+.+.+.+++++....... -...+.+.+.+.++|.||+. .|.+.+.+ +++.+..... .|+-++|.
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~-GGDGTl~~-----v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAG-GGDGTINE-----VVNALIQLDDIPALGILPL 91 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEE-CCCChHHH-----HHHHHhcCCCCCcEEEEcC
Confidence 35566677778887877765444431 23344544545568877764 44444333 3444444233 35666764
No 231
>PRK14561 hypothetical protein; Provisional
Probab=61.95 E-value=49 Score=22.76 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=20.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
+|+|++.|...|--++..+..+ ..+.++++.
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVN 32 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEe
Confidence 5899999988777665544332 345666653
No 232
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=61.85 E-value=41 Score=21.80 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=23.5
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
.++|++.|.-.|-.++..+.+. .+-++.++++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~---~~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK---YGLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH---hCCceEEEEeCC
Confidence 5889999988888777766543 222677777743
No 233
>PRK13057 putative lipid kinase; Reviewed
Probab=61.78 E-value=53 Score=24.01 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+++.+.++...... ..-+..+.+.+ ..++|.||+. .|.+.+.+ +++.+. +.+.|+-++|-
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~-GGDGTv~~-----v~~~l~-~~~~~lgiiP~ 82 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVG-GGDGTLNA-----AAPALV-ETGLPLGILPL 82 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEE-CchHHHHH-----HHHHHh-cCCCcEEEECC
Confidence 3456777777777776654433 23334444443 3457877664 34444433 344443 34688888874
No 234
>PHA02031 putative DnaG-like primase
Probab=61.69 E-value=13 Score=27.03 Aligned_cols=37 Identities=16% Similarity=-0.051 Sum_probs=31.3
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHI 40 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v 40 (164)
.++|++++|+.....+|...|++++...+..+.++.+
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 3799999999999999999999988877777766665
No 235
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=61.69 E-value=12 Score=24.71 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=8.6
Q ss_pred HHHHHHHhhCCCCEEEEe
Q 031195 109 ERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg 126 (164)
+.+.++.+++++|+|++|
T Consensus 53 ~~l~~~i~~~kP~vI~v~ 70 (150)
T PF14639_consen 53 ERLKKFIEKHKPDVIAVG 70 (150)
T ss_dssp HHHHHHHHHH--SEEEE-
T ss_pred HHHHHHHHHcCCeEEEEc
Confidence 444455556666666664
No 236
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=61.30 E-value=66 Score=23.99 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHhhhcCCceEEEEecC-C-h---hHHHHHHHhhCCCCEEEEeccCCc-ccchhcccchhHHHhhcCCccEEE
Q 031195 85 DLLDTASRQKEANIVAKIYWG-D-A---RERLLEAIEDLKLDSLVMGSRGLG-TVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g-~-~---~~~I~~~a~~~~~dlivlg~~~~~-~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
+.+....+..+++++..++-| + . ...+++...+.+++.|.+-.+... ...+...-+....+....++||+.
T Consensus 112 ~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~ 188 (309)
T PF01207_consen 112 EIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIA 188 (309)
T ss_dssp HHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEE
T ss_pred HHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEE
Confidence 333333444457777777765 2 2 466777788899999999765433 222122223445677777888765
No 237
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=61.06 E-value=44 Score=24.77 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=46.3
Q ss_pred HHhhhcCCceEE-EEecCChhHHHHHHHhhCCCCEEEEeccCCccc-chhcccchhHHHhhcCCccEEEEeCCC
Q 031195 89 TASRQKEANIVA-KIYWGDARERLLEAIEDLKLDSLVMGSRGLGTV-RRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 89 ~~~~~~~~~~~~-~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~-~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+.+.+.-+=. .+..-...+++++.|++.+..+|+..+.+.-.. ....+......+.+++++||.+-=++.
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg 84 (286)
T PRK12738 11 QDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHH 84 (286)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 334444443332 233347899999999999999999876543211 112234567788889999998754443
No 238
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=61.06 E-value=51 Score=24.34 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+..+...+.... .+.+-..+. .+..+ +..+.+++.++|-+++-.+.......--.-..-..+...++.||+++.
T Consensus 61 ~~v~~~~~~~~~g-~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 61 EQVVEIAVSTAKG-KVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHHHHHHHHHhCC-CCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 3444444444332 244444443 23333 355668889999998876543322211112234567777889999986
No 239
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=61.01 E-value=11 Score=21.86 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=35.5
Q ss_pred ceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 97 NIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 97 ~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
.+......|+.+..=-. ...++|++|++........... ...........++.+++....+
T Consensus 17 ~i~~i~LfGS~arg~~~--~~SDiDl~vi~~~~~~~~~~~~-~~~~~~~~~~~~vDi~~~~~~~ 77 (93)
T cd05403 17 GVEKVYLFGSYARGDAR--PDSDIDLLVIFDDPLDPLELAR-LLEELELLLGRPVDLVVLNALE 77 (93)
T ss_pred CccEEEEEeeeecCCCC--CCCCeeEEEEeCCCCCHHHHHH-HHHHHHHHhCCcEEEEECCccc
Confidence 46666777876654333 4567999999977655433221 1112233445567777766544
No 240
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.83 E-value=29 Score=23.49 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEEe--cCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 18 KFALSWAVNNLLDKGDTLYIIHIN--PNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
..-+..++++|+..+++...++.. ..... .......+...+.++.+.+.+.+.|
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~------------------------~~~~~~~~~~~~~l~~l~~~a~~~g 125 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPE------------------------DDTEENWERLAENLRELAEIAEEYG 125 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTT------------------------SSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccC------------------------CCHHHHHHHHHHHHHHHHhhhhhhc
Confidence 567888889999999999888854 11110 0111223344677888888888889
Q ss_pred CceEEEEecCCh---h---HHHHHHHhhCCCC
Q 031195 96 ANIVAKIYWGDA---R---ERLLEAIEDLKLD 121 (164)
Q Consensus 96 ~~~~~~~~~g~~---~---~~I~~~a~~~~~d 121 (164)
+.+..+...+.. . +.+.+.+++.+.+
T Consensus 126 v~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 126 VRIALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp SEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred ceEEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 887777665433 2 7888888876544
No 241
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=60.52 E-value=23 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=30.4
Q ss_pred hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 117 DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 117 ~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.+++.||+|+...+.+. .+.-+...+++-.|-|.+.|.+
T Consensus 59 ee~~E~ivvGTG~~G~l~---l~~ea~e~~r~k~~~vi~~pT~ 98 (121)
T COG1504 59 EEGPEVIVVGTGQSGMLE---LSEEAREFFRKKGCEVIELPTP 98 (121)
T ss_pred hcCCcEEEEecCceeEEE---eCHHHHHHHHhcCCeEEEeCCH
Confidence 367999999987666544 4556778888888999888854
No 242
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=60.39 E-value=40 Score=23.94 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+++...+.+..+...+ .|.+..+-+..+.+.++|.+|+|+.
T Consensus 161 l~~~~~~~~~~~~IeV-DGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 161 IRKKIDALGKPIRLEI-DGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEChh
Confidence 3344444455544433 3666666777778889999999965
No 243
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=60.32 E-value=10 Score=22.66 Aligned_cols=65 Identities=9% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHhhhcCCceEEEEe-cCCh-h-H---HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 89 TASRQKEANIVAKIY-WGDA-R-E---RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~-~g~~-~-~---~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
+++.+.|+++...+. .+.+ . . .+.+..++.++|+||.-..+...... .-|....++.-..++|++
T Consensus 24 ~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 24 KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcCCCCc
Confidence 445567787443222 2332 2 2 49999999999998887655432221 123345556666666654
No 244
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.18 E-value=38 Score=20.83 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
+..+...+++.|.++... ......+.+.+.+.+.++|+|.++....
T Consensus 17 l~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~iS~~~~ 62 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGISVSMT 62 (121)
T ss_dssp HHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEEEESSS
T ss_pred HHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEEEccCc
Confidence 455666667777766532 1223458999999999999999987433
No 245
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=59.85 E-value=72 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+..++.|.++.. +-.||+..+|.......++|++ +|..+
T Consensus 167 ~~lI~eiR~~GarI~L-i~DGDVa~ai~~~~~~s~vD~~-~GiGG 209 (321)
T PRK12388 167 SAAIEEATQLGVKVFA-LPDGDVAASVLTCWQDNPYDVM-YTIGG 209 (321)
T ss_pred HHHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEE-EEcCC
Confidence 5566677777777775 4458999889888888899984 55443
No 246
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=59.82 E-value=33 Score=25.31 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHH---HhhCCCCEEEEeccC
Q 031195 80 DIDALDLLDTASRQKEANIVAKIYWGDARERLLEA---IEDLKLDSLVMGSRG 129 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dlivlg~~~ 129 (164)
....|+.+++.....-.+--..+.-|...++|++. .++.++|++.+|.+=
T Consensus 199 SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYl 251 (306)
T COG0320 199 SLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYL 251 (306)
T ss_pred HHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEecccc
Confidence 34555555554433222222334457777777777 556899999999764
No 247
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=59.79 E-value=75 Score=24.12 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=39.7
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc---ccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG---TVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~---~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.|++++... ++. +-.+....++|.+++|..+-. ..-.........-+.++.++|++++=+
T Consensus 189 a~eL~~~GI~vtlI~--Dsa---~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 189 AWELAQEGIDHAIIA--DNA---AGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHHCCCCEEEEc--ccH---HHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 445556688877543 332 333445567999999987632 233323233344455778899999744
No 248
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=59.75 E-value=79 Score=24.37 Aligned_cols=64 Identities=8% Similarity=-0.001 Sum_probs=37.8
Q ss_pred HhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc---ccchhcccchhHHHhhcCCccEEEEeC
Q 031195 90 ASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG---TVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~---~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.+.|++++... ++... ......++|.+++|..+-. ..-.........-+.++.++|++++=+
T Consensus 222 eL~~~GIpvtlI~--Dsa~~---~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap 288 (363)
T PRK05772 222 ELMEEGIKVTLIT--DTAVG---LVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAP 288 (363)
T ss_pred HHHHCCCCEEEEe--hhHHH---HHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEcc
Confidence 3556688887643 33322 3334457999999987632 232222222334455778899999844
No 249
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=59.70 E-value=96 Score=26.77 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=61.9
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCC-----CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccc
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDK-----GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKT 79 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~-----~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
+.++++=.|+....+|+=.++...... ...+++|||.|-....
T Consensus 39 nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn-------------------------------- 86 (814)
T COG1201 39 NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN-------------------------------- 86 (814)
T ss_pred ceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH--------------------------------
Confidence 344455577777777766665543333 4469999986664321
Q ss_pred hHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 80 DIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+..+.++....+..|+++ .++.||..+.=-+......+|+++....
T Consensus 87 -~Di~~rL~~~~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPE 132 (814)
T COG1201 87 -NDIRRRLEEPLRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTPE 132 (814)
T ss_pred -HHHHHHHHHHHHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeChh
Confidence 567777888888888888 6888988877777777778888887643
No 250
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=59.19 E-value=57 Score=24.21 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.++...+.+.. ++.+-.-+. ++..+ ...+.+++.++|-+++..+.......--.-..-..+...++.||+++..
T Consensus 63 ~~~~~~~~~~~~~-~~pvi~gv~-~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 63 SQVVRAAVETTAG-RVPVIAGAG-GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred HHHHHHHHHHhCC-CCcEEEecC-CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 3444445444432 244443332 23333 3446688899999999766433222211223345677888999999974
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 141 ~ 141 (303)
T PRK03620 141 D 141 (303)
T ss_pred C
Confidence 3
No 251
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=59.04 E-value=57 Score=22.51 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=24.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
++++.+.|...|.-++..+.+ .+-.+..+++..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEec
Confidence 578888998888877777666 3567777776644
No 252
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=59.03 E-value=49 Score=25.28 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=47.7
Q ss_pred HHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCccc-ch---hc------------ccchhHHHhhc
Q 031195 86 LLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTV-RR---II------------LGSVSNYVMTH 148 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~-~~---~~------------~~s~~~~i~~~ 148 (164)
++.+.+.+.+.-+=.--..+ ....+|++.|++.+..+|+..+.+.... .. .. +......+.++
T Consensus 11 ~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~ 90 (350)
T PRK09197 11 EMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEH 90 (350)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 33344555554444333334 7899999999999999999876653221 10 01 33566778889
Q ss_pred CCccEEEEeCCC
Q 031195 149 APCPVTIVKDPS 160 (164)
Q Consensus 149 ~~~pVliv~~~~ 160 (164)
+++||.+-=++.
T Consensus 91 ~~VPValHLDHg 102 (350)
T PRK09197 91 YGVPVILHTDHC 102 (350)
T ss_pred CCCCEEEECCCC
Confidence 999988754443
No 253
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=58.72 E-value=71 Score=23.54 Aligned_cols=64 Identities=6% Similarity=0.012 Sum_probs=38.5
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.|++++... ++..-.+ .++ +|.+++|..+- +..-........--+.++.++|++++=+
T Consensus 153 a~eL~~~GI~vtlI~--Dsa~~~~---m~~--vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~ 219 (275)
T PRK08335 153 ANELEFLGIEFEVIT--DAQLGLF---AKE--ATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAE 219 (275)
T ss_pred HHHHHHCCCCEEEEe--ccHHHHH---HHh--CCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECc
Confidence 555566688887644 3333333 344 99999998763 2233333333334455777899999844
No 254
>PRK10481 hypothetical protein; Provisional
Probab=58.64 E-value=64 Score=22.98 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=36.0
Q ss_pred CCceEEEEec--CChhHHHHHHHh---hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 95 EANIVAKIYW--GDARERLLEAIE---DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 95 ~~~~~~~~~~--g~~~~~I~~~a~---~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
|.++...... ....+.+.+.++ ..++|+||+++-+.+. . ....+-+..+.||+.
T Consensus 153 G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-~------~~~~le~~lg~PVI~ 211 (224)
T PRK10481 153 QKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-R------HRDLLQKALDVPVLL 211 (224)
T ss_pred CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-H------HHHHHHHHHCcCEEc
Confidence 6666644432 134456666666 5689999999987764 1 246677788888875
No 255
>PRK00861 putative lipid kinase; Reviewed
Probab=58.58 E-value=71 Score=23.50 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
++++...+.. +.+++....+ ..-+..+.+.+...++|+||+. .|.+.+.. +++.+. ...+|+-++|-
T Consensus 22 ~~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTl~e-----vv~~l~-~~~~~lgviP~ 89 (300)
T PRK00861 22 LALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIAS-GGDGTLSA-----VAGALI-GTDIPLGIIPR 89 (300)
T ss_pred HHHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEE-CChHHHHH-----HHHHHh-cCCCcEEEEcC
Confidence 3444444444 2455544433 2445667766666778887664 44444443 334443 34678888874
No 256
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=58.45 E-value=77 Score=23.82 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=31.5
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+..++.|.++.. +-.||+..+|.......++|++ +|..+
T Consensus 167 ~~lI~eiR~~Gari~L-i~DGDVa~ai~~~~~~s~vD~~-~GiGG 209 (321)
T TIGR00330 167 DAVIAEMQQLGVRVFA-IPDGDVAASILTCMPDSEVDVL-YGIGG 209 (321)
T ss_pred HHHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEE-EEcCC
Confidence 5566677777777775 4558999999888888889984 55443
No 257
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=58.24 E-value=42 Score=24.84 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEeCC
Q 031195 89 TASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.+.+.+.-+=.--..+ ...+++++.|++.+..+|+-.+.+.-...+ ..+......+.+++++||.+-=++
T Consensus 11 ~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH 83 (283)
T PRK07998 11 DRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDH 83 (283)
T ss_pred HHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcC
Confidence 34444444333323333 678999999999999999988665332211 234556777888999998875443
No 258
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.21 E-value=73 Score=23.49 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--CC------------hhHHHHHHHhhCCCCEEEEec---cCCccc-chhcccchhH
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--GD------------ARERLLEAIEDLKLDSLVMGS---RGLGTV-RRIILGSVSN 143 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g~------------~~~~I~~~a~~~~~dlivlg~---~~~~~~-~~~~~~s~~~ 143 (164)
+.-.++.+.+...|+.++.++.. |. -.+...+++++.++|.|.+.- |+.... ...+--....
T Consensus 110 ~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~ 189 (276)
T cd00947 110 AKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLK 189 (276)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHH
Confidence 34446677778889988887654 21 157788999999999998853 222211 1112223556
Q ss_pred HHhhcCCccEEEE
Q 031195 144 YVMTHAPCPVTIV 156 (164)
Q Consensus 144 ~i~~~~~~pVliv 156 (164)
.|-...++|+.+-
T Consensus 190 ~i~~~~~vPLVlH 202 (276)
T cd00947 190 EIAERVNVPLVLH 202 (276)
T ss_pred HHHHHhCCCEEEe
Confidence 6667778888553
No 259
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=57.89 E-value=25 Score=24.93 Aligned_cols=37 Identities=24% Similarity=0.087 Sum_probs=31.1
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHI 40 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v 40 (164)
.++|.+|+|+....+.|...+..+....+-.+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4789999999999999999999988877777666554
No 260
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=57.68 E-value=97 Score=24.76 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=54.5
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....|+.+|+.-... .+.+|++.++..... ............++.+.+.+
T Consensus 11 DLR~~DN~aL~~A~~~~~~---~~~~vfi~~~~~~~~-----------------------~~~~~~~Fl~~sL~~L~~~L 64 (461)
T COG0415 11 DLRLTDNAALAAACQSGQP---VIIAVFILDPEQLGH-----------------------ASPRHAAFLLQSLQALQQSL 64 (461)
T ss_pred ccccCChHHHHHHHhcCCC---ceEEEEEechhhccc-----------------------cCHHHHHHHHHHHHHHHHHH
Confidence 4444556778877765433 236777776653210 00001112235556666666
Q ss_pred hhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 92 RQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.|++. .+..|++...+.+++++.+++-|+-...-
T Consensus 65 ~~~gi~L--~v~~~~~~~~l~~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 65 AELGIPL--LVREGDPEQVLPELAKQLAATTVFWNRDY 100 (461)
T ss_pred HHcCCce--EEEeCCHHHHHHHHHHHhCcceEEeeeee
Confidence 6666554 46779999999999999888777776443
No 261
>PRK06849 hypothetical protein; Provisional
Probab=57.54 E-value=35 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=23.6
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
|+..++|||.-.... .++..+..+.+. |.+++++...
T Consensus 1 ~~~~~~VLI~G~~~~---~~l~iar~l~~~-G~~Vi~~d~~ 37 (389)
T PRK06849 1 MNTKKTVLITGARAP---AALELARLFHNA-GHTVILADSL 37 (389)
T ss_pred CCCCCEEEEeCCCcH---HHHHHHHHHHHC-CCEEEEEeCC
Confidence 788899999754433 455555555443 7777777543
No 262
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=57.53 E-value=33 Score=22.56 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE
Q 031195 17 SKFALSWAVNNLLDKGDTLYII 38 (164)
Q Consensus 17 ~~~al~~a~~la~~~~~~l~ll 38 (164)
+.-++..+..+++ .+-++.++
T Consensus 12 T~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 12 TVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred HHHHHHHHHHHHH-CCCcEEEE
Confidence 4445555555544 34455543
No 263
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=57.52 E-value=39 Score=21.95 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=26.0
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMG 126 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg 126 (164)
..+.+.+++.|.++......+|-.+.|.+..++ .++|+||+.
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 345666666788777655555444555554332 269999985
No 264
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=57.29 E-value=54 Score=24.18 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=44.5
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCccc-c-hhcccchhHHHhhcCC-ccEEEEeC
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTV-R-RIILGSVSNYVMTHAP-CPVTIVKD 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~-~-~~~~~s~~~~i~~~~~-~pVliv~~ 158 (164)
+.+.+.+..+=..-.. -...+++++.|++.+..+|+.-+.+.-.. . -..+......+..+.+ +||.+--.
T Consensus 9 ~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlD 82 (282)
T TIGR01859 9 QKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLD 82 (282)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECC
Confidence 3344444433332333 37799999999999999999876654322 1 1124456677788888 89877544
No 265
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=57.15 E-value=72 Score=23.08 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+.+.+.+++.|+.+......+++ ....++.....++|.++++........ ..-..++..++|++.+-.
T Consensus 42 ~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~------~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 42 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG------NAVKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH------HHHHHHHHCCCCEEEEcc
Confidence 577778888888888777653333333 334555666778998888753321111 112355567889998853
No 266
>PRK00766 hypothetical protein; Provisional
Probab=57.08 E-value=45 Score=23.17 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=39.6
Q ss_pred CCceEEEEecC-ChhHHHHHHHhh----CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 95 EANIVAKIYWG-DARERLLEAIED----LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 95 ~~~~~~~~~~g-~~~~~I~~~a~~----~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
|+-+....+.| |..+.|.+..+. .+..+|++..-.-++++- . -.+.|-++...||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv--v--D~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV--V--DIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE--e--cHHHHHHHHCCCEEEE
Confidence 34455555667 889999999776 355677776444444432 1 2577888999999999
No 267
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=57.06 E-value=68 Score=22.82 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
+...+++.+.|++.|+..-. ..+|.....++...-+.+.+.+|++....+...
T Consensus 98 ~yqk~rve~lc~~lGl~~~~-PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~~ 150 (223)
T COG2102 98 EYQKERVERLCEELGLKVYA-PLWGRDPEELLEEMVEAGFEAIIVAVSAEGLDE 150 (223)
T ss_pred HHHHHHHHHHHHHhCCEEee-cccCCCHHHHHHHHHHcCCeEEEEEEeccCCCh
Confidence 45566788888888887665 678866667777777778999999876655433
No 268
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=57.03 E-value=55 Score=22.02 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=26.7
Q ss_pred eEEEEecCChhHHHHHH--H-hhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 98 IVAKIYWGDARERLLEA--I-EDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 98 ~~~~~~~g~~~~~I~~~--a-~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++..+..++..+++-.. . ...++|.+|-. |.+++.|=++.+.||+-++..
T Consensus 10 ~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsR------------G~ta~~lr~~~~iPVV~I~~s 62 (176)
T PF06506_consen 10 AEIDVIEASLEEAVEEARQLLESEGADVIISR------------GGTAELLRKHVSIPVVEIPIS 62 (176)
T ss_dssp SEEEEEE--HHHHHHHHHHHHTTTT-SEEEEE------------HHHHHHHHCC-SS-EEEE---
T ss_pred ceEEEEEecHHHHHHHHHHhhHhcCCeEEEEC------------CHHHHHHHHhCCCCEEEECCC
Confidence 44556666554444333 3 55789998864 446676777778999988754
No 269
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=56.83 E-value=54 Score=21.60 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhhhcCCceEEEEecC--ChhHHHHHHHhhCCCCEEEEeccCCc-ccchhcccchhHHHhhcCCccEEEE
Q 031195 80 DIDALDLLDTASRQKEANIVAKIYWG--DARERLLEAIEDLKLDSLVMGSRGLG-TVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dlivlg~~~~~-~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
..+.++...+..+..|.++...+.-+ +..+.+.+....+++|-++.-..... .............++++.+..++++
T Consensus 17 ~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~ 96 (164)
T PF01012_consen 17 SLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLF 96 (164)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 46888888888888888777755543 34556666677799997777544332 2222234456677888888889988
Q ss_pred eCCCC
Q 031195 157 KDPSF 161 (164)
Q Consensus 157 ~~~~~ 161 (164)
+....
T Consensus 97 ~~t~~ 101 (164)
T PF01012_consen 97 GSTSF 101 (164)
T ss_dssp ESSHH
T ss_pred cCcCC
Confidence 87543
No 270
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=56.82 E-value=49 Score=23.63 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+++...+.+.++...+ .|.+...-...+.+.++|.+|+|+.
T Consensus 169 lr~~~~~~~~~~~IeV-DGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 169 VENRLGNRRVEKLISI-DGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHhcCCCceEEE-ECCCCHHHHHHHHHCCCCEEEEChh
Confidence 3344445555555433 3556566666778889999999954
No 271
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=56.58 E-value=93 Score=24.19 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=25.2
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
|++++.|.-.|--++.++.+. .+.+++.+++....
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~~~eV~av~~d~Gq 35 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---GGYEVIAVTADVGQ 35 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CCCeEEEEEEECCC
Confidence 578888887777777777553 35589999986553
No 272
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=56.56 E-value=45 Score=20.56 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC--ccEEEE
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP--CPVTIV 156 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~--~pVliv 156 (164)
..+...+++.|.++... ....+.+.+.+.+.+.++|+|.+......... .-.....+.+..+ +++++=
T Consensus 17 ~~~~~~l~~~G~~v~~l-~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~---~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 17 NIVAIALRDNGFEVIDL-GVDVPPEEIVEAAKEEDADVVGLSALSTTHME---AMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred HHHHHHHHHCCCEEEEc-CCCCCHHHHHHHHHHcCCCEEEEecchHhHHH---HHHHHHHHHHhcCCCCeEEEe
Confidence 44555677777776653 23457788889999999999999866544321 1123455556555 555554
No 273
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=56.46 E-value=14 Score=21.20 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=21.1
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLY 36 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ 36 (164)
.++|.+++|.+...+.+..+..+.....+.++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 478999999999888888888875555555444
No 274
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=56.39 E-value=78 Score=23.25 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 85 DLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
.++.+.+++.+++++...-. ..-+..+.+.+...+.|.||+. .|.+.+.+ +++.+... .++|+-++|-
T Consensus 17 ~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTi~e-----v~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 17 REAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAG-GGDGTLRE-----VATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEE-cCChHHHH-----HHHHHHhhCCCCCCcEEEEcC
Confidence 34455667777776654333 2345566666656667876654 44444443 34445432 2457888874
No 275
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=56.35 E-value=68 Score=22.59 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CC------hhHHH---HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCc
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GD------ARERL---LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPC 151 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~------~~~~I---~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~ 151 (164)
+...++.+.+.+.++.+-..... |. ..+.+ .+.+.+.++|.|-++... . -...+++.+.+++
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--~------~~~~~~i~~~~~~ 180 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--D------AESFKEVVEGCPV 180 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--C------HHHHHHHHhcCCC
Confidence 45556666667777765543322 10 11222 344777899998885321 1 1346778888999
Q ss_pred cEEEEeC
Q 031195 152 PVTIVKD 158 (164)
Q Consensus 152 pVliv~~ 158 (164)
||++.-.
T Consensus 181 pvv~~GG 187 (235)
T cd00958 181 PVVIAGG 187 (235)
T ss_pred CEEEeCC
Confidence 9877643
No 276
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=56.12 E-value=74 Score=22.93 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=28.1
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
.++|++.+.+.++|+|++|-.... .+.+ ..+.....+.+|++
T Consensus 146 ~~~i~~~I~~s~~dil~VglG~Pk--QE~~----~~~~~~~~~~~v~~ 187 (243)
T PRK03692 146 RQALFERIHASGAKIVTVAMGSPK--QEIF----MRDCRLVYPDALYM 187 (243)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcH--HHHH----HHHHHHhCCCCEEE
Confidence 467999999999999999844222 2222 24455666677655
No 277
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=55.96 E-value=35 Score=21.21 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=28.9
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC-ccEEEEeCCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP-CPVTIVKDPS 160 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~-~pVliv~~~~ 160 (164)
......+.+.+.++..||+-+.. |.++..+-+.-| |||+.+-+.+
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s---------G~ta~~isk~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES---------GRTARLISKYRPKVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS---------SHHHHHHHHT-TSSEEEEEESSH
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCeEEEEcCcH
Confidence 35567778888888888876542 334555655544 9988886543
No 278
>PRK08392 hypothetical protein; Provisional
Probab=55.94 E-value=55 Score=22.85 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCcc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCP 152 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~p 152 (164)
...+++.+.+.+.|..++......-|...+++.+++.++ -+++|+..+....=-.+ ..+..++++++.+
T Consensus 137 ~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~vg~~-~~a~~~~~~~g~~ 205 (215)
T PRK08392 137 EELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPEDVGNV-SWSLKVFKKAGGK 205 (215)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHHCCcH-HHHHHHHHHcCCC
Confidence 445666677778888777665556677889999999886 47899866553221001 2456677777643
No 279
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=55.78 E-value=64 Score=23.94 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=46.8
Q ss_pred HHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCccc-c-hhcccchhHHHhhcC--CccEEEEeCC
Q 031195 87 LDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTV-R-RIILGSVSNYVMTHA--PCPVTIVKDP 159 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~-~-~~~~~s~~~~i~~~~--~~pVliv~~~ 159 (164)
+.+.+.+.+.-+=..-.. -....++++.|++.+..+|+..+.+.... . --.+.........+. ++||.+-=++
T Consensus 9 iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (288)
T TIGR00167 9 LLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDH 86 (288)
T ss_pred HHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCC
Confidence 334444444443333333 47899999999999999999876654322 1 113455667778888 8898875443
No 280
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=55.43 E-value=53 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=33.9
Q ss_pred ecCChhHHHH-HHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 103 YWGDARERLL-EAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 103 ~~g~~~~~I~-~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
..|....+.- ...+++++|.||.=.+|..+.... -...+.+++||++++.+.
T Consensus 173 m~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eK------i~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 173 LRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAK------LEAARELGIPVVMIARPA 225 (248)
T ss_pred eeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHH------HHHHHHcCCeEEEEeCCC
Confidence 3354444443 447889999999865555433332 256788899999997554
No 281
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=55.30 E-value=88 Score=23.57 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=34.8
Q ss_pred hHHHHHHHhhCCCCEEEEecc-------CCcccchhcccchhHHHhhcCCccEEEEeC---CCCCCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSR-------GLGTVRRIILGSVSNYVMTHAPCPVTIVKD---PSFGKH 164 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~-------~~~~~~~~~~~s~~~~i~~~~~~pVliv~~---~~~~~~ 164 (164)
..+++..-.-.++|++|++.. .+.++.++-.+...+.+-.--.+||++.|= +++.+|
T Consensus 164 ~t~LlaA~~v~~ADv~iV~~GPGivGTGT~~GFSGv~~g~~inAv~~LgG~pv~ipRiS~aD~R~RH 230 (320)
T PF12982_consen 164 YTALLAARHVLKADVAIVAMGPGIVGTGTKWGFSGVEQGEIINAVAALGGRPVAIPRISFADPRERH 230 (320)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCccCCCCCCcccHHHHHHHHHHHHHhCCeEEEEeecccCCCcccc
Confidence 334444333378999998532 344555555566666666666799999873 444555
No 282
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=55.22 E-value=42 Score=19.77 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCc--ccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLG--TVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~--~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
..+.|.+..++.+++.|.+|..+.- .....+.-++.+.+-++.++||.+..+..
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~nDa~ 94 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVVLVDERL 94 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEeCCc
Confidence 3455555566667888888865532 10100112344555566789999987654
No 283
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=55.18 E-value=42 Score=19.86 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+.+.+...|. + .+..-+..++.++..+...+|+++++..-.. ... -.+.+.+-+.. .+|++++-..
T Consensus 9 ~~~~~l~~~l~~~~~--~-~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~---~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 9 EIRELLEKLLERAGY--E-EVTTASSGEEALELLKKHPPDLIIIDLELPD-GDG---LELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHHHTTE--E-EEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBH---HHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHhCCC--C-EEEEECCHHHHHHHhcccCceEEEEEeeecc-ccc---cccccccccccccccEEEecCC
Confidence 444556666665555 1 1222334566678888889999999965433 111 12445554444 4888888644
No 284
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=55.13 E-value=81 Score=23.11 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
..+++...+...++++.......+..+.+....+..++|+|++-+.++....
T Consensus 118 ~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~ 169 (270)
T PRK06731 118 TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRA 169 (270)
T ss_pred HHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCC
Confidence 3445555555555554432111233433333334457999999888877443
No 285
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=54.79 E-value=36 Score=22.83 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=33.5
Q ss_pred HHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcc-cc---hhcccchhHHHhhcCCccEEEEeCCC
Q 031195 89 TASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGT-VR---RIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~-~~---~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+++++.|++.-..+...++.+....+++++++.++-++...... .. .-..-...+.++....-||||.=.+.
T Consensus 26 ~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G 101 (164)
T PF03162_consen 26 PFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHG 101 (164)
T ss_dssp HHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSS
T ss_pred HHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 34555566555545545667778889999999999998765443 11 11111223446667789999975443
No 286
>PRK02628 nadE NAD synthetase; Reviewed
Probab=54.71 E-value=72 Score=26.80 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCC---CeEEEEEE
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKG---DTLYIIHI 40 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~---~~l~ll~v 40 (164)
..++++|++.|.-.|.-++..+.+.....+ .+|+.|+.
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 468999999999888766666666543333 56777776
No 287
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=54.60 E-value=46 Score=24.07 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=36.4
Q ss_pred EEecCChhHHHH-HHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 101 KIYWGDARERLL-EAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 101 ~~~~g~~~~~I~-~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
....|....+.- ...+++++|.||.=.+|..+.... -...+.+++||++++.+..
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eK------i~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEK------IEAARELGIPVIVIKRPPE 230 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHH------HHHHHHcCCeEEEEeCCCC
Confidence 334465555543 448889999999866655544332 3466888999999976543
No 288
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=54.59 E-value=1.4e+02 Score=25.65 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=76.7
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCC--CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcch--hhhHhhcccch
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDK--GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREP--ETMEKYNVKTD 80 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 80 (164)
=++|.|+...++...++.......... ...+.++|.++-.....+ .. .+ ...... ........+..
T Consensus 444 Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~~~~--~l-------i~-h~~~~~~~~~~~s~~~~~i 513 (769)
T KOG1650|consen 444 LRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLVELVGRATP--LL-------IS-HKLRKNGRVESRSSSSDQI 513 (769)
T ss_pred eEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccccch--hh-------hh-hhhccccccccccccchhh
Confidence 378999988887665555444333233 457788888876443211 00 00 000000 00000000011
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec---CChhHHHHHHHhhCCCCEEEEeccCCcccc------hhcccchhHHHhhcCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW---GDARERLLEAIEDLKLDSLVMGSRGLGTVR------RIILGSVSNYVMTHAPC 151 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dlivlg~~~~~~~~------~~~~~s~~~~i~~~~~~ 151 (164)
....+.+.+.- ..++.+..-... ....+.|+..+.+.+.+++++.-+.+.... .....++-..+++++||
T Consensus 514 ~~aF~~f~~~~-~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPC 592 (769)
T KOG1650|consen 514 NVAFEAFEKLS-QEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPC 592 (769)
T ss_pred HHHHHHHHHhc-CCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCC
Confidence 22333333321 123333322211 356899999999999999999977663211 12234567889999999
Q ss_pred cEEEEeCC
Q 031195 152 PVTIVKDP 159 (164)
Q Consensus 152 pVliv~~~ 159 (164)
.|-+.=++
T Consensus 593 SVgIlvdR 600 (769)
T KOG1650|consen 593 SVGILVDR 600 (769)
T ss_pred eEEEEEec
Confidence 99887543
No 289
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=54.29 E-value=73 Score=22.49 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
+....+.+.+....+...+.++...|.--|.-.-+..+.++-|-+....-.-.+.|.|.+.-.+++.+.++=.|+-+.++
T Consensus 18 ~s~~eii~~ln~a~~~~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS~~mlkd~G~~wVIlGHSER 97 (247)
T KOG1643|consen 18 QSIKEIIKTLNAAKLPANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEISAEMLKDLGAEWVILGHSER 97 (247)
T ss_pred HHHHHHHHHhhhccCCCCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccCHHHHHhCCCCEEEecchhh
Confidence 34444555555544444444555555555554455567777776665554555667777788888888888777766543
No 290
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=54.26 E-value=98 Score=23.79 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=26.0
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+.+||+|+.++.=.|- + ++.+.+..+-.|..|+.....
T Consensus 2 ~~~kV~v~mSGGVDSS--V--aA~lLk~QGyeViGl~m~~~~ 39 (356)
T COG0482 2 KKKKVLVGMSGGVDSS--V--AAYLLKEQGYEVIGLFMKNWD 39 (356)
T ss_pred CCcEEEEEccCCHHHH--H--HHHHHHHcCCeEEEEEEEeec
Confidence 4679999988854433 2 334456679999999975554
No 291
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=54.04 E-value=58 Score=23.24 Aligned_cols=39 Identities=10% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 89 TASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+...+.+.++...+. |.+..+-+..+.+.++|.+|+|+.
T Consensus 161 ~~~~~~~~~~~IeVD-GGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 161 ALRERNGLEYLIEVD-GSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHhcCCCeEEEEE-CCCCHHHHHHHHHcCCCEEEEChH
Confidence 344455555555444 555555666777779999999964
No 292
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=53.92 E-value=70 Score=22.02 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=26.8
Q ss_pred HHHhhhcCCceEEEEec-----CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 88 DTASRQKEANIVAKIYW-----GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-----g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.+++.|+++...-.. ....+++.+..++.++|++|+-..+
T Consensus 43 ~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 89 (190)
T TIGR00639 43 LERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGFM 89 (190)
T ss_pred HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCcc
Confidence 45566777776541111 1224678888888999999886543
No 293
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=53.92 E-value=82 Score=22.76 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh----CCCCEEEEeccC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIED----LKLDSLVMGSRG 129 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~----~~~dlivlg~~~ 129 (164)
.+..+..++.+...|+.-...+..|+..+.+.+.... ..+|+|++....
T Consensus 114 ~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK 166 (247)
T PLN02589 114 RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADK 166 (247)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCH
Confidence 3445566777777787666677889888877776543 479999998654
No 294
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=53.84 E-value=78 Score=22.49 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHH
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYV 145 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i 145 (164)
.++.+..++.|.+.=..+.-+.+.+.+..+... +|+|.+-+-..+...+.|..+..+++
T Consensus 100 ~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~--vD~VlvMtV~PGf~GQ~fi~~~l~KI 158 (223)
T PRK08745 100 HRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE--LDLVLVMSVNPGFGGQAFIPSALDKL 158 (223)
T ss_pred HHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh--cCEEEEEEECCCCCCccccHHHHHHH
Confidence 344455555566666555557899999999998 88877765544433344444444443
No 295
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=53.69 E-value=30 Score=27.06 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=18.7
Q ss_pred CChhHHHHHHHhhCCCCEEEEeccCCcc
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
|+-.+++++.+++.++.++.+.+.+..+
T Consensus 102 GdDi~~v~~~~~~~~~~vi~v~t~gf~g 129 (427)
T cd01971 102 GDDVGAVVSEFQEGGAPIVYLETGGFKG 129 (427)
T ss_pred hcCHHHHHHHhhhcCCCEEEEECCCcCc
Confidence 5556666666667778888887766443
No 296
>PLN02476 O-methyltransferase
Probab=53.66 E-value=57 Score=24.05 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHh---hCCCCEEEEeccC
Q 031195 78 KTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIE---DLKLDSLVMGSRG 129 (164)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~~~~dlivlg~~~ 129 (164)
+...+..+.+++.+++.|+.-...+..|+..+.+-+... ...+|++++....
T Consensus 150 E~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 150 ERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 334566677777888888876667778988887766543 2479999998764
No 297
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=53.35 E-value=61 Score=24.06 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=43.7
Q ss_pred HHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCccc-c-hhcccchhHHHhhcC--CccEEEEeC
Q 031195 89 TASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTV-R-RIILGSVSNYVMTHA--PCPVTIVKD 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~-~-~~~~~s~~~~i~~~~--~~pVliv~~ 158 (164)
+.+.+.+.-+=.--..+ ...+++++.|++.+..+|+..+.+.... . -..+......+..+. ++||.+-=+
T Consensus 11 ~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLD 85 (293)
T PRK07315 11 QAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLD 85 (293)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 33444444333323333 7899999999999999999877654322 1 122345566777777 668876433
No 298
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=53.27 E-value=27 Score=21.04 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCC-hhHHHH-HHHhhCCCCEEEEeccCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGD-ARERLL-EAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~-~~~~I~-~~a~~~~~dlivlg~~~~ 130 (164)
-.-+.+++.+.+.|+++........ +...+. +.... +|++++.....
T Consensus 16 laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~--Ad~vi~~~~~~ 64 (96)
T cd05569 16 MAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAE--ADAVILAADVP 64 (96)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhh--CCEEEEecCCC
Confidence 4446788888888988887655542 333333 33444 99999976544
No 299
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=53.05 E-value=32 Score=25.45 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=45.0
Q ss_pred HHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEE
Q 031195 87 LDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv 156 (164)
+.+.+.+.+.-+=..-..+ ...+++++.|++.+..+|+.-+.+...... -.+......+.++.++||.+-
T Consensus 8 ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 8 LLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 3333444444433333334 789999999999999998887765443332 234557888899999999764
No 300
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=52.91 E-value=88 Score=22.81 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhh--cCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQ--KEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~--~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
...++.+.+.+.. .++.+......+++. ..+++.+...++|-+|+......... .... -+...++||+++
T Consensus 15 ~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~~-~~~~~giPvV~~ 88 (303)
T cd01539 15 SLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQ-----TVIN-KAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHH-----HHHH-HHHHCCCCEEEe
Confidence 4566667777777 555554433333443 34666677789999888643221111 1223 345678899887
Q ss_pred e
Q 031195 157 K 157 (164)
Q Consensus 157 ~ 157 (164)
-
T Consensus 89 ~ 89 (303)
T cd01539 89 N 89 (303)
T ss_pred C
Confidence 4
No 301
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=52.90 E-value=33 Score=26.35 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGD 106 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~ 106 (164)
.+.+..+.+.+.+..+ +..+..||
T Consensus 26 ~~~f~~~l~~a~~~~v--D~vliAGD 49 (390)
T COG0420 26 KKAFDELLEIAKEEKV--DFVLIAGD 49 (390)
T ss_pred HHHHHHHHHHHHHccC--CEEEEccc
Confidence 3444455555554433 44444444
No 302
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=52.61 E-value=66 Score=22.72 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
+..+++++...+.+..+...+ .|.+...=+..+.+.++|.+|+|+
T Consensus 152 ekI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 152 DKLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred HHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeH
No 303
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=52.54 E-value=1.1e+02 Score=23.73 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=18.4
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.....+++.+++.+.+.+.+|+.+..
T Consensus 245 ~~~~~l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 245 FHVFLLFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECccc
Confidence 45667777778777888888766543
No 304
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=52.49 E-value=70 Score=24.48 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=47.5
Q ss_pred HHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCC-ccEEEEeCCC
Q 031195 87 LDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAP-CPVTIVKDPS 160 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~-~pVliv~~~~ 160 (164)
+.+.+.+.+.-+=..-.. -....++++.|++.+..+|+..+.+.....+ -++......+..+.+ +||.+-=++.
T Consensus 9 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg 85 (347)
T PRK13399 9 LLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHG 85 (347)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 334444444443333333 4789999999999999999998775432222 234556677777785 8988754443
No 305
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=52.46 E-value=90 Score=22.80 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|..+......++.. ..+++.....++|-||+......... +... -+...+.||+++-
T Consensus 14 ~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~-----~~l~-~~~~~~iPvV~~d 86 (302)
T TIGR02634 14 QKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLS-----NAVQ-EAKDEGIKVVAYD 86 (302)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-----HHHH-HHHHCCCeEEEec
Confidence 5666777778888777665433333433 35666677778998888643221111 1122 2355678888874
No 306
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=52.41 E-value=30 Score=24.85 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=11.8
Q ss_pred HHHhhcCCccEEEEeCCC
Q 031195 143 NYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 143 ~~i~~~~~~pVliv~~~~ 160 (164)
-+.+...+||+++||.+.
T Consensus 82 f~~L~~~~~p~~~vPG~~ 99 (255)
T PF14582_consen 82 FRILGELGVPVFVVPGNM 99 (255)
T ss_dssp HHHHHCC-SEEEEE--TT
T ss_pred HHHHHhcCCcEEEecCCC
Confidence 357788999999999653
No 307
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=52.29 E-value=73 Score=24.39 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCC-ccEEEEeCCC
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAP-CPVTIVKDPS 160 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~-~pVliv~~~~ 160 (164)
+.+.+.+.-+=.--.. -....+|++.|++.+..+|+..+.+.....+ -++......+..+.+ +||-+-=++.
T Consensus 9 ~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg 83 (347)
T TIGR01521 9 DHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHG 83 (347)
T ss_pred HHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 3344444433332333 3789999999999999999998776432221 234556777788886 8998754443
No 308
>PRK14057 epimerase; Provisional
Probab=52.27 E-value=62 Score=23.55 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=25.9
Q ss_pred HHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 89 TASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+...+.+..+...+ .|.+...-+..+.+.++|.+|+|+.
T Consensus 185 ~~~~~~~~~~~IeV-DGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 185 CLLGDKREGKIIVI-DGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHhcCCCceEEE-ECCCCHHHHHHHHHCCCCEEEEChH
Confidence 44445555554433 3566666667778889999999954
No 309
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.17 E-value=83 Score=22.33 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+..+.+.+++.|..+......+++. ...++.....++|.||+......... ...+ .+...+.||+++-.
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~-----~~i~-~~~~~~iPvV~~~~ 88 (282)
T cd06318 15 AALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLV-----PAVA-AAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchH-----HHHH-HHHHCCCCEEEecC
Confidence 5677778888888888776533334543 34566677889999999643221111 1122 33456788888853
No 310
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=52.12 E-value=74 Score=24.51 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCC-CeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 17 SKFALSWAVNNLLDKG-DTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 17 ~~~al~~a~~la~~~~-~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
.+.++..+-++..++| .++.++--....+ .+.-..+++.+...|
T Consensus 118 NQ~~~pl~~~~~~~~G~~r~~lvGSdYv~p-----------------------------------re~Nri~r~~l~~~G 162 (363)
T PF13433_consen 118 NQQLLPLIDYLLENFGAKRFYLVGSDYVYP-----------------------------------RESNRIIRDLLEARG 162 (363)
T ss_dssp GGTHHHHHHHHHHHS--SEEEEEEESSHHH-----------------------------------HHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhccCCceEEEecCCccch-----------------------------------HHHHHHHHHHHHHcC
Confidence 4445555556666678 8888887533322 122233445555556
Q ss_pred CceEEE--EecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 96 ANIVAK--IYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 96 ~~~~~~--~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.++-.+ +--| +-...|++.++..++|+|+-.--|.+... |+....+.=+....|||+-+
T Consensus 163 gevvgE~Y~plg~td~~~ii~~I~~~~Pd~V~stlvG~s~~a--F~r~~~~aG~~~~~~Pi~S~ 224 (363)
T PF13433_consen 163 GEVVGERYLPLGATDFDPIIAEIKAAKPDFVFSTLVGDSNVA--FYRAYAAAGLDPERIPIASL 224 (363)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHHHHT-SEEEEE--TTCHHH--HHHHHHHHH-SSS---EEES
T ss_pred CEEEEEEEecCCchhHHHHHHHHHhhCCCEEEEeCcCCcHHH--HHHHHHHcCCCcccCeEEEE
Confidence 554332 2225 66788889989999998876655554322 33333444444445887643
No 311
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=52.04 E-value=58 Score=20.50 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=40.6
Q ss_pred HHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCC-CEEEEeccCCcccchhcccchhHHHhhcCC---ccEEEEeC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKL-DSLVMGSRGLGTVRRIILGSVSNYVMTHAP---CPVTIVKD 158 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~-dlivlg~~~~~~~~~~~~~s~~~~i~~~~~---~pVliv~~ 158 (164)
.+++.+.+...+..++....+ .+..+++.......+. |.||+. .+.+.+.. +.+.++.... +|+-++|-
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~-GGDGTl~~-----vv~~l~~~~~~~~~~l~iiP~ 90 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVV-GGDGTLNE-----VVNGLMGSDREDKPPLGIIPA 90 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEE-ESHHHHHH-----HHHHHCTSTSSS--EEEEEE-
T ss_pred HHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEE-cCccHHHH-----HHHHHhhcCCCccceEEEecC
Confidence 366777777777777766555 4677788775555555 676665 33333332 3344444332 58888884
No 312
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=51.79 E-value=70 Score=21.54 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMG 126 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg 126 (164)
.....+.+.+.+.|.++......+|-.+.|.+..++ .++|+||+.
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 334456677778888877765556554445544332 358988885
No 313
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=51.78 E-value=44 Score=22.97 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHh----hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 109 ERLLEAIE----DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 109 ~~I~~~a~----~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
+.+.+.++ ..++|.||+|+.+...+.. ..+.+....+.||+
T Consensus 161 ~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~-----~~~~l~~~~gipVi 205 (216)
T PF01177_consen 161 EILAEAARELIKEDGADAIILGCTHLPLLLG-----AIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHHCTTSSEEEEESTTGGGGHH-----HHHHHHHTCSSEEE
T ss_pred HHHHHHHHHHhccCCCCEEEECCCchHHHHH-----HHHhhcccCCCEEE
Confidence 35666665 7899999999887664422 34666666677775
No 314
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=51.60 E-value=23 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+-.+++++...+.+..+...+. |.+...-...+.+.++|.+|+|+.
T Consensus 151 ~KI~~l~~~~~~~~~~~~I~vD-GGI~~~~~~~~~~aGad~~V~Gs~ 196 (201)
T PF00834_consen 151 EKIRELRKLIPENGLDFEIEVD-GGINEENIKQLVEAGADIFVAGSA 196 (201)
T ss_dssp HHHHHHHHHHHHHTCGSEEEEE-SSESTTTHHHHHHHT--EEEESHH
T ss_pred HHHHHHHHHHHhcCCceEEEEE-CCCCHHHHHHHHHcCCCEEEECHH
Confidence 3444556666666666776544 555556666677779999999953
No 315
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.40 E-value=79 Score=23.42 Aligned_cols=74 Identities=14% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-C----C-----------hhHHHHHHHhhCCCCEEEEec---cCCcccchhcccchh
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-G----D-----------ARERLLEAIEDLKLDSLVMGS---RGLGTVRRIILGSVS 142 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g----~-----------~~~~I~~~a~~~~~dlivlg~---~~~~~~~~~~~~s~~ 142 (164)
+.-.++.+.+...|+.++.++.. | + -.++..+++++.++|.|.+.- |+.......+--...
T Consensus 115 ~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L 194 (284)
T PRK09195 115 SLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRL 194 (284)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHH
Confidence 44456777888889888887644 1 1 245788999999999998863 333221112222355
Q ss_pred HHHhhcCCccEEE
Q 031195 143 NYVMTHAPCPVTI 155 (164)
Q Consensus 143 ~~i~~~~~~pVli 155 (164)
+.|-...++|+.+
T Consensus 195 ~~I~~~~~vPLVL 207 (284)
T PRK09195 195 ENIRQWVNIPLVL 207 (284)
T ss_pred HHHHHHhCCCeEE
Confidence 6666667889644
No 316
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=51.39 E-value=87 Score=22.30 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=33.8
Q ss_pred CceEEEEec-C-ChhHHHHHHHh---hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 96 ANIVAKIYW-G-DARERLLEAIE---DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 96 ~~~~~~~~~-g-~~~~~I~~~a~---~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..+.+.... . ...+.+.+.++ +.++|+|||.+-|.+...+ +.+-+.++.||++-+
T Consensus 150 ~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r-------~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 150 NPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYTQEMR-------DIVQRALGKPVLLSR 209 (221)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHH-------HHHHHHhCCCEEeHH
Confidence 344444433 1 33455665554 4589999999887764332 445566789998743
No 317
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=51.34 E-value=96 Score=22.83 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=51.8
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
+|-|.+.-...+..-++-|-++.+.++.. .+.|+.-+..+.. ..+....
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf~~------------------------------e~EttIs 52 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNFMS------------------------------EQETTIS 52 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTGGG------------------------------CHHHHHH
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCcccc------------------------------hHHHHHH
Confidence 45566665555666677777777777765 7788777765431 1145556
Q ss_pred HHHHHhhhcCCceEEEEec-C-ChhHHHHHHHhhCCCCEEEEeccC
Q 031195 86 LLDTASRQKEANIVAKIYW-G-DARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-g-~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
++..++.+. .+...++. + .-.-+..+-+++.+.|++.+....
T Consensus 53 kI~~lAdDp--~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~ 96 (275)
T PF12683_consen 53 KIVSLADDP--DMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEP 96 (275)
T ss_dssp HHHGGGG-T--TEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS-
T ss_pred HHHHhccCC--CccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCC
Confidence 666666655 56665555 3 234455666788889999987654
No 318
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=51.21 E-value=1.1e+02 Score=23.52 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=38.7
Q ss_pred HhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc---ccchhcccchhHHHhhcCCccEEEEeC
Q 031195 90 ASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG---TVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~---~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.+.|++++... ++ .+-.+.++.++|.+++|..+-. ..-.........-+.++.++|++|+=+
T Consensus 214 eL~~~GI~vtlI~--Ds---av~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 214 EYHYDGIPLKLIS--DN---MAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred HHHHCCCCEEEEe--hh---HHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcc
Confidence 4456688888644 22 2234555667999999987633 232322222334455778899999843
No 319
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=51.09 E-value=90 Score=22.41 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecC---------ChhHHHHHHHh---hCCCCEEEEeccCCcccchhcccchhHHHhhcC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWG---------DARERLLEAIE---DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA 149 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g---------~~~~~I~~~a~---~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~ 149 (164)
..-+.+.+++++.|+++....-.| -..+.|.+.++ ..++|.|++.+.....+. +.+.+=...
T Consensus 132 ~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~------vi~~lE~~l 205 (239)
T TIGR02990 132 ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAAT------CAQRIEQAI 205 (239)
T ss_pred HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHH------HHHHHHHHH
Confidence 444566677777777665432111 12455666655 568999999876554332 345555556
Q ss_pred CccEE
Q 031195 150 PCPVT 154 (164)
Q Consensus 150 ~~pVl 154 (164)
+.||+
T Consensus 206 GkPVl 210 (239)
T TIGR02990 206 GKPVV 210 (239)
T ss_pred CCCEE
Confidence 66665
No 320
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=51.06 E-value=1e+02 Score=23.05 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..+.+++.|.++|+..+....++...+.
T Consensus 28 GHq~Ll~~a~~~a~~~~~~~~vitFd~~ 55 (305)
T PRK05627 28 GHQALLARAREIARERGLPSVVMTFEPH 55 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4679999999999988877777775443
No 321
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=50.94 E-value=29 Score=23.45 Aligned_cols=74 Identities=23% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccc----hhHHHhh--cCCccEEE
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGS----VSNYVMT--HAPCPVTI 155 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s----~~~~i~~--~~~~pVli 155 (164)
..++.+.+.+.. ++ +..|...--|.-..+-.++|++++..-..+....+..|= +++.+.+ +..+||+|
T Consensus 57 gL~~~l~~~~~~----~~--~e~~ansPfi~GrlqlGkYD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyi 130 (187)
T COG1036 57 GLWDKLEKIFGG----LE--VEIGANSPFIAGRLQLGKYDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYI 130 (187)
T ss_pred HHHHHHHHHcCC----eE--eecCCCCCceecceecccccEEEEcccccchHHHHHhhhHHHHHHHHHHHhcCCCCcEEE
Confidence 444555555543 22 333422223444455567999999865555555443321 2333333 44699999
Q ss_pred EeCCCC
Q 031195 156 VKDPSF 161 (164)
Q Consensus 156 v~~~~~ 161 (164)
+|.+..
T Consensus 131 vP~D~k 136 (187)
T COG1036 131 VPVDYK 136 (187)
T ss_pred eccccc
Confidence 998654
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=50.92 E-value=70 Score=21.14 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=17.8
Q ss_pred EEeCCCccHHHHHHHHHHhcCCCCCeEEEEEE
Q 031195 9 VALDFSPSSKFALSWAVNNLLDKGDTLYIIHI 40 (164)
Q Consensus 9 v~vd~s~~~~~al~~a~~la~~~~~~l~ll~v 40 (164)
+...++..+--+...+..+++. +.++.++..
T Consensus 6 ~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~ 36 (173)
T cd03115 6 VGLQGVGKTTTAAKLALYLKKK-GKKVLLVAA 36 (173)
T ss_pred ECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEc
Confidence 3334555566666777666544 556666654
No 323
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=50.82 E-value=32 Score=23.42 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.9
Q ss_pred hHHHHHHHhhCCCCEEEEecc
Q 031195 108 RERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~ 128 (164)
.++|++.+++.++|+|++|-.
T Consensus 89 ~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 89 RKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEcC
Confidence 467899999999999999843
No 324
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.81 E-value=37 Score=24.43 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCCh
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDA 107 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~ 107 (164)
..++++.+.+.+.+ ++..+..||.
T Consensus 26 ~~l~~l~~~~~~~~--~D~lli~GDi 49 (253)
T TIGR00619 26 AFLDDLLEFAKAEQ--IDALLVAGDV 49 (253)
T ss_pred HHHHHHHHHHHHcC--CCEEEECCcc
Confidence 45666666665543 4445555543
No 325
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=50.67 E-value=60 Score=24.70 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=45.1
Q ss_pred hhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccC-Ccccc----------------hhcccchhHHHhhcCCcc
Q 031195 91 SRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRG-LGTVR----------------RIILGSVSNYVMTHAPCP 152 (164)
Q Consensus 91 ~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~-~~~~~----------------~~~~~s~~~~i~~~~~~p 152 (164)
+.+.+.-+=..-..+ ....++++.|++.+..+|+..+.+ ..... -..+...+..+.++.++|
T Consensus 8 A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VP 87 (340)
T cd00453 8 AKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVP 87 (340)
T ss_pred HHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCC
Confidence 334444333333334 678999999999999999988762 21111 123455677788889999
Q ss_pred EEEEeCCC
Q 031195 153 VTIVKDPS 160 (164)
Q Consensus 153 Vliv~~~~ 160 (164)
|.+-=.+.
T Consensus 88 V~lHLDH~ 95 (340)
T cd00453 88 VILHTDHC 95 (340)
T ss_pred EEEEcCCC
Confidence 98765443
No 326
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=50.63 E-value=73 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.278 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
+..+....+.|.+.|++.-. ..++...+.+++..-+.+++.+|+.....+.
T Consensus 97 ~~~r~~~e~vc~~lGl~~~~-PLW~~d~~~ll~e~i~~Gf~aiIv~V~~~~L 147 (218)
T PF01902_consen 97 EYQRNWVERVCERLGLEAVF-PLWGRDREELLREFIESGFEAIIVKVDADGL 147 (218)
T ss_dssp HHHHHHHHHHHHHCT-EEE--TTTT--HHHHHHHHHHTT-EEEEEEEESTT-
T ss_pred HHHHHHHHHHHHHcCCEEEe-cccCCCHHHHHHHHHHCCCeEEEEEEeccCC
Confidence 45556677777777777665 6778777777777777799999998765543
No 327
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=50.44 E-value=1.1e+02 Score=23.04 Aligned_cols=43 Identities=30% Similarity=0.304 Sum_probs=31.2
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+..+..|.++.. +-.||+..+|.-.....++|++ +|..+
T Consensus 167 ~~lI~eiR~~Gari~L-i~DGDV~~ai~~~~~~s~vD~~-~GiGG 209 (309)
T cd01516 167 AALIEEIREAGARIKL-IPDGDVAAAIATALPGSGVDVL-MGIGG 209 (309)
T ss_pred HHHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEE-EECCC
Confidence 5566677777777775 4458999888888888889984 55443
No 328
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=50.41 E-value=38 Score=23.67 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchh
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDES 48 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~ 48 (164)
|...+.|++++.+|-++...+ .++..+++.+++|..+.-.+......
T Consensus 83 ~i~~~DvviaiS~SGeT~el~-~~~~~aK~~g~~liaiT~~~~SsLak 129 (202)
T COG0794 83 MITPGDVVIAISGSGETKELL-NLAPKAKRLGAKLIAITSNPDSSLAK 129 (202)
T ss_pred CCCCCCEEEEEeCCCcHHHHH-HHHHHHHHcCCcEEEEeCCCCChHHH
Confidence 445678999999999988754 45556899999999999877765443
No 329
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=50.35 E-value=1e+02 Score=22.81 Aligned_cols=69 Identities=9% Similarity=-0.117 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhcCCceEEE----------Eec--CChhHHHHHHHhhC--CCCEEEEeccCCcccchhcccchhHHHh
Q 031195 81 IDALDLLDTASRQKEANIVAK----------IYW--GDARERLLEAIEDL--KLDSLVMGSRGLGTVRRIILGSVSNYVM 146 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~----------~~~--g~~~~~I~~~a~~~--~~dlivlg~~~~~~~~~~~~~s~~~~i~ 146 (164)
....+.+.+.+.+.++.+... ... |+..++|++.++.. +++..++-+... .+..+.
T Consensus 64 ~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~----------~~~~lA 133 (286)
T PRK06027 64 ETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD----------DLRSLV 133 (286)
T ss_pred HHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh----------hHHHHH
Confidence 344455556666555443322 122 67899999988774 567766665533 234457
Q ss_pred hcCCccEEEEeCC
Q 031195 147 THAPCPVTIVKDP 159 (164)
Q Consensus 147 ~~~~~pVliv~~~ 159 (164)
++.+.|++.++++
T Consensus 134 ~~~gIp~~~~~~~ 146 (286)
T PRK06027 134 ERFGIPFHHVPVT 146 (286)
T ss_pred HHhCCCEEEeccC
Confidence 7888888887754
No 330
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=50.26 E-value=92 Score=22.27 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=27.2
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
++++|.+.|.-.|--++.++.+ .+..++.|++....
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~----~~~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ----QYDEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh----cCCeEEEEEEEeCC
Confidence 6899999998888877777743 23478888887664
No 331
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=50.24 E-value=1.1e+02 Score=23.37 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=57.7
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
+..++.+.||..+...-+............+.++|..-.. . +
T Consensus 183 ~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~-------------------------------------~-~ 224 (357)
T COG0707 183 KKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKN-------------------------------------D-L 224 (357)
T ss_pred CcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcc-------------------------------------h-H
Confidence 4566677888887764444444443333377777765553 2 4
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
++........++ ++..- ..+.+..+.+. +||+|. ..|.+... . +--+..|.+++|..+-
T Consensus 225 ~~~~~~~~~~~~-~~v~~----f~~dm~~~~~~--ADLvIs-RaGa~Ti~---------E-~~a~g~P~IliP~p~~ 283 (357)
T COG0707 225 EELKSAYNELGV-VRVLP----FIDDMAALLAA--ADLVIS-RAGALTIA---------E-LLALGVPAILVPYPPG 283 (357)
T ss_pred HHHHHHHhhcCc-EEEee----HHhhHHHHHHh--ccEEEe-CCcccHHH---------H-HHHhCCCEEEeCCCCC
Confidence 555555555555 33322 33345666666 888665 33322222 2 2446789999997664
No 332
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=49.84 E-value=60 Score=21.21 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=23.3
Q ss_pred HHHHHHHhhCCCCEEEEeccC-CcccchhcccchhHHHhhcC-CccEEEEeC
Q 031195 109 ERLLEAIEDLKLDSLVMGSRG-LGTVRRIILGSVSNYVMTHA-PCPVTIVKD 158 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~-~~~~~~~~~~s~~~~i~~~~-~~pVliv~~ 158 (164)
.++.++.+++++|-||+-.+. +|.+.+--.|.-.+.+++-. .|+|-++.+
T Consensus 51 ~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~ 102 (138)
T PF11215_consen 51 FTFAKLMEDYKVDKVVIKERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSP 102 (138)
T ss_pred HHHHHHHHHcCCCEEEEEecccCCCccCCchhHHHHHHHHhcCCCcEEEECH
Confidence 344555666666666665432 22222222222334444444 366665544
No 333
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=49.84 E-value=84 Score=21.70 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+.+.+.+.+.+.|+++...-..++. ....++.+...++|.+|+......... .-..+...++|++.+..
T Consensus 15 ~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-------~~~~l~~~~ip~v~~~~ 87 (264)
T cd01537 15 AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-------IVKLARKAGIPVVLVDR 87 (264)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-------HHHHhhhcCCCEEEecc
Confidence 456666777777777776654444443 344455455558999888643322110 23455677889988754
No 334
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.77 E-value=94 Score=22.25 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++. ...+++.....++|-||+-........ +.. ..+...++||+++-.
T Consensus 16 ~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~-----~~~-~~~~~~~iPvV~~d~ 89 (280)
T cd06315 16 LGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ-----AEL-ELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH-----HHH-HHHHHCCCCEEEecC
Confidence 467778888888887665543333343 346777788899999999633211111 111 334567899999843
No 335
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=49.33 E-value=98 Score=22.35 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=43.5
Q ss_pred HHHhhhcCCceEEEEecC--ChhHHHHHHHhh-CCCCEEEEeccCCcccchhcccchhHHHhhcC--CccEEEEeCCCC
Q 031195 88 DTASRQKEANIVAKIYWG--DARERLLEAIED-LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA--PCPVTIVKDPSF 161 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~-~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~--~~pVliv~~~~~ 161 (164)
.......+..+......+ .|.+.|.+-... ..+|+++.=....+.-+...++...+-+.++- .+||-++++..+
T Consensus 120 a~lGAPL~hDF~~ISLSDlLtPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnagR 198 (249)
T COG1010 120 ARLGAPLGHDFCVISLSDLLTPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAGR 198 (249)
T ss_pred HHhCCCcccceEEEEhHhcCCcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 333333344555555555 678888765332 34898887655555444434444444444433 499999998775
No 336
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=49.29 E-value=1.1e+02 Score=23.12 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecC-Ch----hHHHHHHHhhCCCCEEEEeccC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWG-DA----RERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g-~~----~~~I~~~a~~~~~dlivlg~~~ 129 (164)
++++.+.+... ++.++.+++-| +. ...+.+.+.+.+++.+.+-.+.
T Consensus 125 ~iv~a~~~av~--~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRt 175 (323)
T COG0042 125 EIVKAMVEAVG--DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRT 175 (323)
T ss_pred HHHHHHHHhhC--CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEeccc
Confidence 33333333333 47777777776 22 4579999999999999996544
No 337
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.23 E-value=75 Score=20.94 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
..+.+.++..|.++..--.. ...+++.+.|-+.++|.|++.+...+... +.....+.+-..-.-+++
T Consensus 30 kvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~--l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 30 KVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLT--LVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHH--HHHHHHHHHHHhCCcceE
Confidence 44566677777665542222 45588889999999999999876544322 334455555554445555
No 338
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=48.87 E-value=68 Score=20.38 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=23.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMG 126 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg 126 (164)
..+.+.+++.|.++.......|-.+.|.+..++ .++|+||..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITT 64 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 446666777787765544444443444443322 248988874
No 339
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=48.75 E-value=1.2e+02 Score=23.17 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhcCCceEEEEecCCh----hHHHHHHHhhCCCCEEE-EeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDA----RERLLEAIEDLKLDSLV-MGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliv-lg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..+++.+.+...++.+.+....+++ .+.+.+.+++.++|.|| +|.... .+++..+....+.|++.||
T Consensus 44 ~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv--------~D~aK~iA~~~~~p~i~IP 115 (366)
T PRK09423 44 VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT--------LDTAKAVADYLGVPVVIVP 115 (366)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH--------HHHHHHHHHHcCCCEEEeC
Confidence 5566777777777765443344433 45666677888999877 442211 1223333333467888888
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 116 Tt 117 (366)
T PRK09423 116 TI 117 (366)
T ss_pred Cc
Confidence 64
No 340
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=48.55 E-value=38 Score=27.33 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=10.2
Q ss_pred HHhcCCCCCeEEEEEEecC
Q 031195 25 VNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 25 ~~la~~~~~~l~ll~v~~~ 43 (164)
.+.+.....-+.++|--..
T Consensus 17 ~~~a~~i~~~~~i~H~p~G 35 (513)
T CHL00076 17 LRVASSFKNVHAIMHAPLG 35 (513)
T ss_pred HHHHHhcCCcEEEeeCCCC
Confidence 3344445566677775333
No 341
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=48.53 E-value=42 Score=26.23 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
-.+.|.+.++++++|-||.-....-.....-...+...+..+.+.|+|.+-.+
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D 390 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETD 390 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcC
Confidence 47789999999999999997665443333222233455656689999998543
No 342
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=48.48 E-value=96 Score=22.01 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHh--hcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVM--THAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~--~~~~~pVliv~~ 158 (164)
....+.+...+...|..+.+.. -.++..+.+... +|+|++...-. ...++- ....+= .....||+++-.
T Consensus 10 ~~i~~~l~~~L~~~g~~v~~~~----~~~~a~~~~~~~-~dlviLD~~lP-~~dG~~---~~~~iR~~~~~~~PIi~Lta 80 (229)
T COG0745 10 PELAELLKEYLEEEGYEVDVAA----DGEEALEAAREQ-PDLVLLDLMLP-DLDGLE---LCRRLRAKKGSGPPIIVLTA 80 (229)
T ss_pred HHHHHHHHHHHHHCCCEEEEEC----CHHHHHHHHhcC-CCEEEEECCCC-CCCHHH---HHHHHHhhcCCCCcEEEEEC
Confidence 4566677778888777766522 226667777777 99999985322 111111 122222 446688998865
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 81 ~ 81 (229)
T COG0745 81 R 81 (229)
T ss_pred C
Confidence 4
No 343
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.37 E-value=1.4e+02 Score=23.73 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=24.0
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+++...+...++.+... .....+.+.+...++|+|++.+.+..
T Consensus 269 eQLk~yAe~lgvp~~~~----~~~~~l~~~l~~~~~D~VLIDTaGr~ 311 (432)
T PRK12724 269 EQLKRYADTMGMPFYPV----KDIKKFKETLARDGSELILIDTAGYS 311 (432)
T ss_pred HHHHHHHHhcCCCeeeh----HHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 34555555555554321 11334555555567888888876654
No 344
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=48.26 E-value=1e+02 Score=22.33 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhc-C
Q 031195 17 SKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQK-E 95 (164)
Q Consensus 17 ~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 95 (164)
+.-+.-.+.+++.+.+..|.++-..+...... ..|.+.. .+..-...+.+++..... +
T Consensus 14 Ttiaalll~~l~~~~~~~VLvVDaDpd~nL~~------~LGve~~---------------~~~lg~~~e~~~k~~~a~~~ 72 (255)
T COG3640 14 TTIAALLLKRLLSKGGYNVLVVDADPDSNLPE------ALGVEEP---------------MKYLGGKRELLKKRTGAEPG 72 (255)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCCCCCChHH------hcCCCCC---------------CcccccHHHHHHHHhccCCC
Confidence 44344446777777777777776665433321 1111111 111223333344433321 1
Q ss_pred ----CceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcc
Q 031195 96 ----ANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 96 ----~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
--++.....++..++.+..... +||+|||+....+
T Consensus 73 ~~~~~~fk~~~~~~di~~e~~~e~~~--~~LLvmGkie~~G 111 (255)
T COG3640 73 GPPGEMFKENPLVSDLPDEYLVENGD--IDLLVMGKIEEGG 111 (255)
T ss_pred CCcccccccCcchhhhhHHHhhhcCC--ccEEEeccccCCC
Confidence 1233334445666555555555 9999999866443
No 345
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=48.23 E-value=49 Score=26.09 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=41.3
Q ss_pred hhHhhcccchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 71 TMEKYNVKTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
..+....+...+.++++.+.++..|..+.+.--.....+.|.+.+++.+..-|+.|.+
T Consensus 40 ~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 40 EIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 3344445556677888888888877777763333466777888999999999999843
No 346
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=48.15 E-value=83 Score=22.35 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh---CCCCEEEEecc
Q 031195 78 KTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIED---LKLDSLVMGSR 128 (164)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dlivlg~~ 128 (164)
+...+..+.+++.+...|+.-...+..|+..+.+-+.... ..+|++++...
T Consensus 100 D~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 100 DIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 3345666677777777777655667778888777666443 47999999854
No 347
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=48.13 E-value=45 Score=21.34 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=33.9
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
-.+|+|.-|....+....+.++.-....+.++..+...+.+
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP 80 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTP 80 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HH
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcH
Confidence 46899999999999999998888888899999998865554
No 348
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.11 E-value=95 Score=21.81 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+...|+++......+++ ...+++.+...++|-+|+.......... ..+ .++..+.||+.+-.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~-~~~~~~ipvV~~~~ 88 (267)
T cd06322 15 IELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRA-----AIA-KAKKAGIPVITVDI 88 (267)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHH-----HHH-HHHHCCCCEEEEcc
Confidence 567777888888888777654333343 3455556667789999996432211111 123 24566789988853
No 349
>PRK05595 replicative DNA helicase; Provisional
Probab=47.92 E-value=1.4e+02 Score=23.60 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=27.7
Q ss_pred HHHHHhhCCCCEEEEeccC------Ccccchhcccch---hHHHhhcCCccEEEEeCCC
Q 031195 111 LLEAIEDLKLDSLVMGSRG------LGTVRRIILGSV---SNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 111 I~~~a~~~~~dlivlg~~~------~~~~~~~~~~s~---~~~i~~~~~~pVliv~~~~ 160 (164)
+.++..++++|+||+-.=+ ....+..-.+.+ ...+.+..+|||+++-.-.
T Consensus 303 ~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLn 361 (444)
T PRK05595 303 CRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQLS 361 (444)
T ss_pred HHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccC
Confidence 3344455789999985421 111111112333 3445788899999985433
No 350
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=47.92 E-value=85 Score=21.22 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+..++.|.++++..+....++...+.+
T Consensus 14 GH~~ll~~a~~~a~~~~~~~vvv~f~~~p 42 (180)
T cd02064 14 GHQALIKTLKKIARERGLPSAVLTFDPHP 42 (180)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEECCCH
Confidence 45788999999998877777777765543
No 351
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=47.78 E-value=88 Score=23.20 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHhhhcCCceEEE-EecCChhHHHHHHHhhCCCCEEEEeccCCccc-c-hhcccchhHHHhhcCC--ccEEEEeCC
Q 031195 89 TASRQKEANIVAK-IYWGDARERLLEAIEDLKLDSLVMGSRGLGTV-R-RIILGSVSNYVMTHAP--CPVTIVKDP 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~-~-~~~~~s~~~~i~~~~~--~pVliv~~~ 159 (164)
+.+.+.+.-+=.. +..-...+++++.|++.+..+|+..+.+.... . -..+......+..+.+ +||.+-=++
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDH 86 (286)
T PRK08610 11 IDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDH 86 (286)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 3344444433332 33347899999999999999999887654332 1 1224556677777777 788765443
No 352
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=47.74 E-value=68 Score=24.53 Aligned_cols=24 Identities=4% Similarity=-0.083 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+..+.+|+++|
T Consensus 164 ~~eRI~r~AF~~A~~r~~~Vt~v~ 187 (349)
T TIGR00169 164 EIERIARVAFEMARKRRKKVTSVD 187 (349)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEE
Confidence 477889999999988666788777
No 353
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=47.67 E-value=41 Score=26.25 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=13.3
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccCCc
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRGLG 131 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~~~ 131 (164)
|+-.+++.+.++ +.++.++.+.+.+-.
T Consensus 101 GdDi~~v~~~~~~~~~~~vi~v~t~gf~ 128 (430)
T cd01981 101 QEDLQNFVRAAGLSSKSPVLPLDVNHYR 128 (430)
T ss_pred hhCHHHHHHHhhhccCCCeEEecCCCcc
Confidence 433444444433 345666666555543
No 354
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=47.57 E-value=45 Score=26.07 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=12.4
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccCC
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRGL 130 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~~ 130 (164)
|+-.+.|.+.++ +.++.++.+.+.+.
T Consensus 105 GdDi~~v~~~~~~~~~~pvi~v~t~gf 131 (426)
T cd01972 105 GDDVESVVEELEDEIGIPVVALHCEGF 131 (426)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 433444444433 34566666655443
No 355
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=47.54 E-value=87 Score=23.48 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=31.8
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccC-Cccc-chhcccchhHHHhhcCCccEEEE
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRG-LGTV-RRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~-~~~~-~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+..++++...+ +|+||+|... .... ..+....+.+.| ++.||+.|
T Consensus 174 ~a~p~vl~AI~~--AD~IiiGPgnp~TSI~P~L~v~gi~eAL---~~a~vV~V 221 (303)
T PRK13606 174 KPAPGVLEAIEE--ADAVIIGPSNPVTSIGPILAVPGIREAL---TEAPVVAV 221 (303)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHhhchhccchhHHHHH---hCCCEEEE
Confidence 467788889988 9999999543 2222 234456677777 77888844
No 356
>PRK06988 putative formyltransferase; Provisional
Probab=47.50 E-value=1.2e+02 Score=22.74 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=28.0
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.+.+.+.|+.+.... .-..+++.+..++.++|++|+...+
T Consensus 46 ~v~~~A~~~gip~~~~~--~~~~~~~~~~l~~~~~Dliv~~~~~ 87 (312)
T PRK06988 46 SVAAVAAEHGIPVITPA--DPNDPELRAAVAAAAPDFIFSFYYR 87 (312)
T ss_pred HHHHHHHHcCCcEEccc--cCCCHHHHHHHHhcCCCEEEEehhc
Confidence 35667777788765311 1123467788889999999987554
No 357
>PRK08005 epimerase; Validated
Probab=47.36 E-value=98 Score=21.78 Aligned_cols=58 Identities=10% Similarity=-0.034 Sum_probs=35.8
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHH
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYV 145 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i 145 (164)
++.+..++.|.++=..+.-+.+.+.+..+... +|+|.+-+-..+...+.|..+..+++
T Consensus 97 ~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~--vD~VlvMsV~PGf~GQ~f~~~~~~KI 154 (210)
T PRK08005 97 EILADIRAIGAKAGLALNPATPLLPYRYLALQ--LDALMIMTSEPDGRGQQFIAAMCEKV 154 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh--cCEEEEEEecCCCccceecHHHHHHH
Confidence 44455555566665555557899999999998 88877765444433333444444443
No 358
>PRK08194 tartrate dehydrogenase; Provisional
Probab=47.01 E-value=64 Score=24.71 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|++.+.+|+++|
T Consensus 162 ~~eRI~r~Af~~A~~r~~~Vt~v~ 185 (352)
T PRK08194 162 GTERAMRYAFELAAKRRKHVTSAT 185 (352)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEe
Confidence 467889999999988766788887
No 359
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=46.94 E-value=1.3e+02 Score=23.19 Aligned_cols=48 Identities=6% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHHHhh--hcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 82 DALDLLDTASR--QKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 82 ~~l~~~~~~~~--~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+-+.+.+.++ ..|++++..-........+.....+ +|.|++|++..+
T Consensus 263 ~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~--~d~ii~GspT~~ 312 (394)
T PRK11921 263 RMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFK--SKAILVGSSTIN 312 (394)
T ss_pred HHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHh--CCEEEEECCCcC
Confidence 33344445554 4566666544444445566665555 999999988754
No 360
>PRK12361 hypothetical protein; Provisional
Probab=46.63 E-value=1.6e+02 Score=23.96 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+..+++.+.+.+. .+++..... .+-+..+.+.+.+.++|.||+. .|.+.+.+ +++.+. +.++|+-++|-
T Consensus 260 ~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~-GGDGTl~e-----v~~~l~-~~~~~lgiiP~ 329 (547)
T PRK12361 260 EYGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIAC-GGDGTVTE-----VASELV-NTDITLGIIPL 329 (547)
T ss_pred HHHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEE-CCCcHHHH-----HHHHHh-cCCCCEEEecC
Confidence 4455555555543 444433322 2345677776666678887664 44444443 334443 34688888884
No 361
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=46.60 E-value=70 Score=24.19 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 15 PSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
+.++..+++|+++|++.+.+|+++|
T Consensus 141 ~~~eRi~r~AF~~A~~r~~~Vt~v~ 165 (322)
T TIGR02088 141 EGSERIARFAFNLAKERNRKVTCVH 165 (322)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4577889999999988776766666
No 362
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=46.49 E-value=98 Score=21.54 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=24.3
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
-.++|+.+.|.-.|.- |+++....|.+|..||+..++
T Consensus 3 ~gk~l~LlSGGiDSpV----Aa~lm~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 3 QGKALALLSGGIDSPV----AAWLMMKRGCEVIALHFDSPP 39 (197)
T ss_dssp T-EEEEE-SSCCHHHH----HHHHHHCBT-EEEEEEEE-TT
T ss_pred CceEEEEecCCccHHH----HHHHHHHCCCEEEEEEEECCC
Confidence 3578888888777764 344555679999999997554
No 363
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=46.36 E-value=24 Score=23.13 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=26.0
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+.+.++++++++|.|++.-+...... .. -.-..+.+.+|+|.++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~~~---i~-~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEEEQ---IK-RIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-HHH---HH-HHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCHHH---HH-HHHHHHHhCCCEEEEeC
Confidence 578999999999999999865543211 11 12335667789999887
No 364
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=46.30 E-value=95 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=17.4
Q ss_pred HHHHHHHhhCCCCEEEEeccC
Q 031195 109 ERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+..+|++++++-|++|.+.
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~ 121 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCE 121 (201)
T ss_pred HHHHHHHHHCCCCEEEEEecc
Confidence 446688999999999999764
No 365
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=46.20 E-value=1.2e+02 Score=23.40 Aligned_cols=75 Identities=20% Similarity=0.124 Sum_probs=48.3
Q ss_pred HHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCccc-ch----------------hcccchhHHHhh
Q 031195 86 LLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTV-RR----------------IILGSVSNYVMT 147 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~-~~----------------~~~~s~~~~i~~ 147 (164)
.+.+.+.+.+.-+=..-.. -....++++.|++.+..+|+..+.+.-.. .+ ..+......+..
T Consensus 17 ~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae 96 (357)
T TIGR01520 17 KLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAE 96 (357)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 3344455544444333333 47899999999999999999887654211 10 114456677888
Q ss_pred cCCccEEEEeCCC
Q 031195 148 HAPCPVTIVKDPS 160 (164)
Q Consensus 148 ~~~~pVliv~~~~ 160 (164)
+.++||.+-=++.
T Consensus 97 ~a~VPValHLDHg 109 (357)
T TIGR01520 97 HYGVPVVLHTDHC 109 (357)
T ss_pred HCCCCEEEECCCC
Confidence 9999998765544
No 366
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=46.09 E-value=1.2e+02 Score=22.53 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.+..+.+.+++.|+.++.+..+......+.......+++.+.-|..-.. ..-.-.++...+++|-+.|..
T Consensus 172 ~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg~~l~~-------~~~~i~~l~~~gi~v~~cP~S 242 (324)
T TIGR01430 172 PDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHGVRALE-------DPELLKRLAQENITLEVCPTS 242 (324)
T ss_pred HHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchhhhhcc-------CHHHHHHHHHcCceEEECCcc
Confidence 34556667777889999998887544445555555666665433322110 112344566666776666643
No 367
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=45.76 E-value=1.2e+02 Score=22.23 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... ++.+-.-+...+. .-+..+.+++.++|-+++..+.......--+-..-..|...++.|+++...
T Consensus 57 ~~l~~~~~~~~~~-~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 57 KELLEIVVEAAAG-RVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred HHHHHHHHHHccC-ceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 3444444444332 3444443333333 334455688899999887755433222111122446777888999999875
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 136 P 136 (289)
T PF00701_consen 136 P 136 (289)
T ss_dssp H
T ss_pred C
Confidence 3
No 368
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=45.76 E-value=63 Score=25.25 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=8.7
Q ss_pred CCccEEEEeCC
Q 031195 149 APCPVTIVKDP 159 (164)
Q Consensus 149 ~~~pVliv~~~ 159 (164)
...||++++..
T Consensus 109 ~~iPVf~I~GN 119 (405)
T TIGR00583 109 VAIPVFSIHGN 119 (405)
T ss_pred CCCCEEEEcCC
Confidence 57999999754
No 369
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=45.74 E-value=96 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=20.6
Q ss_pred cCChhHHHHHHHhhCCCCEEEEecc
Q 031195 104 WGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.|.+...-...+...++|.+|.|+.
T Consensus 175 DGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 175 DGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred eCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 3667777788888889999999974
No 370
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=45.72 E-value=99 Score=21.33 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
....+...+.|.+.|+..-. ..++...+.+++..-+.+.+.+|+.....+
T Consensus 100 d~~~~~~e~~~~~~gl~~~~-PLW~~~~~~ll~e~~~~g~~~~iv~v~~~~ 149 (194)
T cd01994 100 EYQRTRVERVCERLGLEPLA-PLWGRDQEELLREMIEAGFKAIIIKVAAEG 149 (194)
T ss_pred HHHHHHHHHHHHHcCCEEEe-cccCCCHHHHHHHHHHcCCeEEEEEeccCC
Confidence 35566777888888887766 677877778888888999999998766543
No 371
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.69 E-value=52 Score=18.61 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
..+.+++.++.+..+....+ +++.++..+.++..+.
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~-~~~~a~~~g~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLA-ALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCCCCHHHHH-HHHHHHHcCCeEEEEe
Confidence 35678999999888876554 5566777788776665
No 372
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=45.59 E-value=71 Score=19.65 Aligned_cols=66 Identities=9% Similarity=0.109 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDPS 160 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~~ 160 (164)
-..+++.......|+.++.....-+... ... .++|++++|..-...+ ..+-..+ ++||.++++..
T Consensus 18 ll~~km~~~~~~~gi~~~V~A~~~~~~~---~~~--~~~DviLl~Pqi~~~~---------~~i~~~~~~~pV~~I~~~~ 83 (106)
T PRK10499 18 LLVSKMRAQAEKYEVPVIIEAFPETLAG---EKG--QNADVVLLGPQIAYML---------PEIQRLLPNKPVEVIDSLL 83 (106)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeecchhh---ccc--cCCCEEEECHHHHHHH---------HHHHhhcCCCCEEEEChHh
Confidence 3344666666777887776443222221 223 3589999985432211 2222222 27999998765
Q ss_pred C
Q 031195 161 F 161 (164)
Q Consensus 161 ~ 161 (164)
+
T Consensus 84 Y 84 (106)
T PRK10499 84 Y 84 (106)
T ss_pred h
Confidence 4
No 373
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=45.54 E-value=45 Score=25.51 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCC-eEEEEEEecCCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGD-TLYIIHINPNSL 45 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~-~l~ll~v~~~~~ 45 (164)
.+.+|.|...|...|--.+..++++++..+- +|.++|+.-...
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~Q 69 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQ 69 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhh
Confidence 4678999999999999999999999998544 899999855443
No 374
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=45.29 E-value=59 Score=24.26 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=15.9
Q ss_pred cccchhHHHhhcCC-ccEEEEe
Q 031195 137 ILGSVSNYVMTHAP-CPVTIVK 157 (164)
Q Consensus 137 ~~~s~~~~i~~~~~-~pVliv~ 157 (164)
.+..+.+.+...+. +|||+.=
T Consensus 141 ~~~~l~~EL~~~~~~~PVL~av 162 (309)
T PF10236_consen 141 VFQALIRELKAQSKRPPVLVAV 162 (309)
T ss_pred HHHHHHHHHHhcccCCceEEEe
Confidence 35566788888888 9999863
No 375
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=45.20 E-value=1.5e+02 Score=23.15 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=28.1
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.++||++.+.--+...+......++-+..+-+..++|--...
T Consensus 2 ~~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~ 43 (383)
T COG0381 2 KMLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHR 43 (383)
T ss_pred CceEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccc
Confidence 467888888877777765555555545555777777754444
No 376
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=45.13 E-value=1.1e+02 Score=21.65 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec--CCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW--GDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~--g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+.+.+.+++.|.++...... +++ ....++.....++|-+|+.......... ..+ .+...++||+.+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~~-~~~~~~iPvV~~ 88 (275)
T cd06320 15 RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVP-----AVE-RAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHH-----HHH-HHHHCCCeEEEE
Confidence 466677777788888776654332 233 2344555666689988876432221111 123 345667888887
Q ss_pred eC
Q 031195 157 KD 158 (164)
Q Consensus 157 ~~ 158 (164)
..
T Consensus 89 ~~ 90 (275)
T cd06320 89 ND 90 (275)
T ss_pred CC
Confidence 43
No 377
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=45.08 E-value=1.2e+02 Score=22.30 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C-ChhHHHHHHHhhCCCCEEEEeccC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G-DARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g-~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
...+.+.+.+.+.|+++...... + .-...++..+++.++|.|++...+
T Consensus 150 ~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~ 200 (334)
T cd06327 150 SLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAG 200 (334)
T ss_pred HHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccc
Confidence 44555666666666655432222 2 233445555566678888887654
No 378
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=45.07 E-value=58 Score=25.27 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=24.4
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCccc-c---hhcccchhHHHhhcCCccEEEE
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLGTV-R---RIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~~~-~---~~~~~s~~~~i~~~~~~pVliv 156 (164)
|++.--+..+.+++|+|.+-..+.... . ---+-.+++.++..+++|++|.
T Consensus 141 P~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~ 194 (389)
T TIGR00381 141 PAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIG 194 (389)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEe
Confidence 333334444566677776653322211 0 0012335566666666777665
No 379
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=45.02 E-value=1e+02 Score=21.22 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhh-cCCceEEEEecCChhHHH----------------HHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQ-KEANIVAKIYWGDARERL----------------LEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~-~~~~~~~~~~~g~~~~~I----------------~~~a~~~~~dlivlg~~~~~ 131 (164)
++..+.+.+.+.+ .|.+++..-........+ .+... ++|.||+|++...
T Consensus 16 ~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~gsPty~ 81 (200)
T PRK03767 16 ETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELA--DYDAIIFGTPTRF 81 (200)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHH--hCCEEEEEecccC
Confidence 3555566666665 677766544332221222 23334 4999999987654
No 380
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=44.97 E-value=36 Score=23.47 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 76 NVKTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+.++..+.++..++-+++.| --...+++|+..+.+.+.. .+|.+++|..
T Consensus 63 AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~---~~daiFIGGg 111 (187)
T COG2242 63 AIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLP---SPDAIFIGGG 111 (187)
T ss_pred EEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCC---CCCEEEECCC
Confidence 45555677788888888887 3345578888877777444 4999999965
No 381
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.66 E-value=1.3e+02 Score=22.35 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C------------ChhHHHHHHHhhCCCCEEEEec---cCCcccchhcccchhHH
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G------------DARERLLEAIEDLKLDSLVMGS---RGLGTVRRIILGSVSNY 144 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g------------~~~~~I~~~a~~~~~dlivlg~---~~~~~~~~~~~~s~~~~ 144 (164)
+.-.++.+.+...|+.++.++.. | .-.+...+++++.++|.|.++- |+.......+--...+.
T Consensus 118 ~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~ 197 (285)
T PRK07709 118 ETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQ 197 (285)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHH
Confidence 44456777788889988887744 1 2367888999999999999853 22221111122234566
Q ss_pred HhhcCCccEEE
Q 031195 145 VMTHAPCPVTI 155 (164)
Q Consensus 145 i~~~~~~pVli 155 (164)
|-..+++|+.+
T Consensus 198 I~~~~~iPLVL 208 (285)
T PRK07709 198 VRDFTGVPLVL 208 (285)
T ss_pred HHHHHCCCEEE
Confidence 77777899744
No 382
>PLN02417 dihydrodipicolinate synthase
Probab=44.46 E-value=1.2e+02 Score=22.13 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.++...+.... .+.+-..+...+.. -...+.+++.++|.+++..+.......--.-..-..+...+ ||+++..
T Consensus 57 ~~~~~~~~~~~~~-~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~ 133 (280)
T PLN02417 57 IMLIGHTVNCFGG-KIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNV 133 (280)
T ss_pred HHHHHHHHHHhCC-CCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEEC
Confidence 3444444444332 23433333222333 33445588899999999866433221111111224455544 9999865
Q ss_pred CC
Q 031195 159 PS 160 (164)
Q Consensus 159 ~~ 160 (164)
+.
T Consensus 134 P~ 135 (280)
T PLN02417 134 PG 135 (280)
T ss_pred hh
Confidence 53
No 383
>COG1162 Predicted GTPases [General function prediction only]
Probab=44.44 E-value=1.3e+02 Score=22.50 Aligned_cols=90 Identities=18% Similarity=0.078 Sum_probs=53.5
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCCCCCe-EEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 7 IGVALDFSPSSKFALSWAVNNLLDKGDT-LYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 7 iLv~vd~s~~~~~al~~a~~la~~~~~~-l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
|+|..-..+.+...++..+-+|...+.+ +.+|.=++-.... . ... +
T Consensus 85 iIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~-------------------------------~-~~~-~ 131 (301)
T COG1162 85 IVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDE-------------------------------E-AAV-K 131 (301)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcch-------------------------------H-HHH-H
Confidence 3444556666777888888888877774 4444433332100 0 111 4
Q ss_pred HHHHHhhhcCCceEEEE-ecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 86 LLDTASRQKEANIVAKI-YWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.......+.|..+-..- ..++..+++..+.+. --.+++|.+|-+
T Consensus 132 ~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~--~~svl~GqSGVG 176 (301)
T COG1162 132 ELLREYEDIGYPVLFVSAKNGDGLEELAELLAG--KITVLLGQSGVG 176 (301)
T ss_pred HHHHHHHhCCeeEEEecCcCcccHHHHHHHhcC--CeEEEECCCCCc
Confidence 45556666666655433 335777888877777 377888988755
No 384
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=44.29 E-value=1e+02 Score=21.16 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred HHHHHhhhcCCceEEEEec-CCh----------------hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc
Q 031195 86 LLDTASRQKEANIVAKIYW-GDA----------------RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH 148 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-g~~----------------~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~ 148 (164)
.+...+++.|++....+.. |.- .+.=.+..++++.-++.+|.-..- +.. -+..++++
T Consensus 53 dIt~~LRr~Gi~ts~lvLnaG~GvP~da~~~~~g~~fgl~~~E~~qI~~HklAV~h~GNvk~h----Ii~--K~r~ilr~ 126 (194)
T TIGR03264 53 EITYALREAGIQTSVLVLNAGSGIPPDAPRGGGGSTFGLTPEEIEQINRHKLAVIHLGNVKSH----IIY--KARLILKH 126 (194)
T ss_pred HHHHHHHHcCCccceEEEecCCCCCCcccccccccccCCCHHHHHHHhhcCEEEEEeCCHHHH----HHH--HHHHHHhc
Confidence 4556667777777766554 211 233345677766666666633211 111 24568889
Q ss_pred CCccEEEEeCCC
Q 031195 149 APCPVTIVKDPS 160 (164)
Q Consensus 149 ~~~pVliv~~~~ 160 (164)
.+.|++||-..+
T Consensus 127 vdIP~IiVcq~P 138 (194)
T TIGR03264 127 VDIPAIIVCQAP 138 (194)
T ss_pred CCCCEEEEeCCC
Confidence 999999775444
No 385
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=44.28 E-value=72 Score=22.81 Aligned_cols=56 Identities=11% Similarity=0.354 Sum_probs=32.3
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcc-----cchhHHHhhcCCccEEEEeCCCCCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIIL-----GSVSNYVMTHAPCPVTIVKDPSFGK 163 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~-----~s~~~~i~~~~~~pVliv~~~~~~~ 163 (164)
...-.+..+..++|..++|..+-....++.. ..+-..++..+...++++...++++
T Consensus 154 G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 154 NPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred CHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCC
Confidence 3344566677777777777665432222211 2345566667777777777666543
No 386
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=44.18 E-value=1.3e+02 Score=22.16 Aligned_cols=119 Identities=15% Similarity=0.227 Sum_probs=64.1
Q ss_pred ceEEEEeCCCccH--HHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 5 RKIGVALDFSPSS--KFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 5 ~~iLv~vd~s~~~--~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
+...|.+.+++.+ -..++.........+-+|-+|.|.|..++.- |. .+-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tG--------GA-lLG-------------------- 78 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTG--------GA-LLG-------------------- 78 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC------------SS---------------------
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCC--------Cc-ccc--------------------
Confidence 3456777777753 2234444444445788999999988876431 10 110
Q ss_pred HHHHHHHHhhhcCCceEEEEecCC------hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGD------ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~------~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
-+-++.+...+.++=+....-.|. ....++..++..++|+|++=+-+-+- .--.|..-+++-|+++
T Consensus 79 DRiRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQ--------sE~~I~~~aD~~v~v~ 150 (266)
T PF03308_consen 79 DRIRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQ--------SEVDIADMADTVVLVL 150 (266)
T ss_dssp -GGGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSST--------HHHHHHTTSSEEEEEE
T ss_pred cHHHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCc--------cHHHHHHhcCeEEEEe
Confidence 001233344455554444333332 35667778888999999998776542 2345778888888888
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
.|..
T Consensus 151 ~Pg~ 154 (266)
T PF03308_consen 151 VPGL 154 (266)
T ss_dssp ESST
T ss_pred cCCC
Confidence 7643
No 387
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=44.15 E-value=90 Score=20.40 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCC-CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccc
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDK-GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKT 79 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~-~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
|....+|++.++.++. ..+++++..+.... |-+|. ....
T Consensus 1 ~~~~~~v~lsv~d~dK-~~l~~~a~~l~~ll~Gf~l~-----AT~g---------------------------------- 40 (142)
T PRK05234 1 MPARKRIALIAHDHKK-DDLVAWVKAHKDLLEQHELY-----ATGT---------------------------------- 40 (142)
T ss_pred CCcCcEEEEEEeccch-HHHHHHHHHHHHHhcCCEEE-----EeCh----------------------------------
Confidence 4567788888877764 44677777776652 44421 1211
Q ss_pred hHHHHHHHHHHhhhc-CCceEEEEecCC--hhHHHHHHHhhCCCCEEEEec
Q 031195 80 DIDALDLLDTASRQK-EANIVAKIYWGD--ARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~-~~~~~~~~~~g~--~~~~I~~~a~~~~~dlivlg~ 127 (164)
-.+++++. |+.++..+ .+. -...|.+..++.++|+||--.
T Consensus 41 -------Ta~~L~~~~Gi~v~~vi-~~~~gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 41 -------TGGLIQEATGLDVTRLL-SGPLGGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred -------HHHHHHhccCCeeEEEE-cCCCCCchhHHHHHHcCceeEEEEec
Confidence 11223344 78877653 321 236799999999999998865
No 388
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=44.13 E-value=1.3e+02 Score=22.27 Aligned_cols=69 Identities=7% Similarity=-0.144 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEE------------ecCChhHHHHHHHhhC--CCCEEEEeccCCcccchhcccchhHHHh
Q 031195 81 IDALDLLDTASRQKEANIVAKI------------YWGDARERLLEAIEDL--KLDSLVMGSRGLGTVRRIILGSVSNYVM 146 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~------------~~g~~~~~I~~~a~~~--~~dlivlg~~~~~~~~~~~~~s~~~~i~ 146 (164)
....+.+.+.+.+.++.+.... ..|+..++|+++.+.. ++++.++-+.... +..+.
T Consensus 64 ~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~----------~~~lA 133 (286)
T PRK13011 64 DALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD----------LEPLA 133 (286)
T ss_pred HHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc----------HHHHH
Confidence 4555566666666655444321 1257789999998776 4677766554321 34457
Q ss_pred hcCCccEEEEeCC
Q 031195 147 THAPCPVTIVKDP 159 (164)
Q Consensus 147 ~~~~~pVliv~~~ 159 (164)
++.++|+.+++.+
T Consensus 134 ~~~gIp~~~~~~~ 146 (286)
T PRK13011 134 AWHGIPFHHFPIT 146 (286)
T ss_pred HHhCCCEEEeCCC
Confidence 7778888877643
No 389
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=44.09 E-value=1.4e+02 Score=22.75 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=39.1
Q ss_pred HHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcc--cchhcccchh-HHHhhcCCccEEEEeC
Q 031195 89 TASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGT--VRRIILGSVS-NYVMTHAPCPVTIVKD 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~--~~~~~~~s~~-~~i~~~~~~pVliv~~ 158 (164)
..+.+.|++++.... ..+-...++.++|.+++|..+-.. .-.. .|... .-+.++.++|++++=+
T Consensus 201 ~eL~~~GI~vtlI~D-----sa~~~~M~~~~Vd~VivGAd~I~anGv~NK-iGT~~lA~~Ak~~~vPfyV~ap 267 (339)
T PRK06036 201 WELMQDNIPVTLITD-----SMAGIVMRQGMVDKVIVGADRITRDAVFNK-IGTYTHSVLAKEHEIPFYVAAP 267 (339)
T ss_pred HHHHHcCCCEEEEeh-----hHHHHHhccCCCCEEEECccchhhcCeehh-hhHHHHHHHHHHhCCCEEEEee
Confidence 344466888886442 234455666779999999876432 2222 23333 3445777899999743
No 390
>PF13362 Toprim_3: Toprim domain
Probab=43.78 E-value=68 Score=18.94 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCcc--HHHHHHHHHHhcCCCCCeEEEEEE
Q 031195 3 GDRKIGVALDFSPS--SKFALSWAVNNLLDKGDTLYIIHI 40 (164)
Q Consensus 3 ~~~~iLv~vd~s~~--~~~al~~a~~la~~~~~~l~ll~v 40 (164)
..++|+|+.|.... ...+...+.+.+...+..+.++.-
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 36789999998888 777777777666666666665553
No 391
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=43.59 E-value=1.1e+02 Score=23.17 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=36.4
Q ss_pred HHHHHHHhhhcCCceEEEEec-CC--h----hHHHHHHHhhCCCCEEE-EeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 84 LDLLDTASRQKEANIVAKIYW-GD--A----RERLLEAIEDLKLDSLV-MGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-g~--~----~~~I~~~a~~~~~dliv-lg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
.+++.+.+.+.++++.+.... ++ + .+.+.+.+++ ++|.|| +|.... .+++..+....+.|++.
T Consensus 39 ~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~--------~D~aK~vA~~~~~p~i~ 109 (348)
T cd08175 39 GKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTI--------NDITKYVSYKTGIPYIS 109 (348)
T ss_pred HHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHH--------HHHHHHHHHhcCCCEEE
Confidence 466677777777766543322 32 2 3345555555 788877 552211 12333333334678888
Q ss_pred EeCC
Q 031195 156 VKDP 159 (164)
Q Consensus 156 v~~~ 159 (164)
||..
T Consensus 110 IPTT 113 (348)
T cd08175 110 VPTA 113 (348)
T ss_pred ecCc
Confidence 8864
No 392
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=43.26 E-value=53 Score=20.34 Aligned_cols=41 Identities=12% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+.+++.+..+..+...++.+- .++..+++++++.-....
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~-~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLR-FAKERGAPVILITSNSES 92 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHH-HHHHTTSEEEEEESSTTS
T ss_pred cccceeEeeeccccchhhhhhhH-HHHhcCCeEEEEeCCCCC
Confidence 45788999999998888666666 788899999666644443
No 393
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=43.24 E-value=64 Score=23.26 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCCEEEEeccCCcccchhcc-----cchhHHHhhcCCccEEEEeCCCCC
Q 031195 109 ERLLEAIEDLKLDSLVMGSRGLGTVRRIIL-----GSVSNYVMTHAPCPVTIVKDPSFG 162 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~~~~~~~~~~-----~s~~~~i~~~~~~pVliv~~~~~~ 162 (164)
..-.+..+...+|..++|..+-..-.+... ..+...++..+..-++++-..+++
T Consensus 154 ~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~ 212 (252)
T PRK10906 154 EATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFG 212 (252)
T ss_pred HHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhC
Confidence 334555566666666666655432222211 224455666666666666555544
No 394
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=43.22 E-value=1.1e+02 Score=23.26 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccch----hcccchhHHHhhcC--CccEEEEeCCC
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRR----IILGSVSNYVMTHA--PCPVTIVKDPS 160 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~----~~~~s~~~~i~~~~--~~pVliv~~~~ 160 (164)
+.+.+.+.-+=.--.. -...++|++.|++.+..+|+-.+.+.....+ ..+......+.+++ ++||.+-=++.
T Consensus 17 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg 95 (321)
T PRK07084 17 AKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHG 95 (321)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 3444444433332333 4789999999999999999988765432211 11222334556665 68887754443
No 395
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=43.15 E-value=93 Score=20.29 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhcCCceEEEE------ecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 82 DALDLLDTASRQKEANIVAKI------YWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~------~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
+.+--|.-.+.+.|..+...- ..|...+...++...+ +|+||+-....+ ..+.+..++.+||+=
T Consensus 52 RTR~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~-~D~iv~R~~~~~---------~~~~~a~~~~vPVIN 121 (142)
T PF02729_consen 52 RTRLSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRY-VDAIVIRHPSHG---------ALEELAEHSSVPVIN 121 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHH-CSEEEEEESSHH---------HHHHHHHHCSSEEEE
T ss_pred hhhhhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHh-hheEEEEeccch---------HHHHHHHhccCCeEc
Confidence 444445555566666544433 1144455555565555 999999744332 456788888999973
No 396
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=43.13 E-value=75 Score=23.18 Aligned_cols=53 Identities=11% Similarity=0.252 Sum_probs=27.8
Q ss_pred HHHHHHhhCCCCEEEEeccCCcccchhc-----ccchhHHHhhcCCccEEEEeCCCCC
Q 031195 110 RLLEAIEDLKLDSLVMGSRGLGTVRRII-----LGSVSNYVMTHAPCPVTIVKDPSFG 162 (164)
Q Consensus 110 ~I~~~a~~~~~dlivlg~~~~~~~~~~~-----~~s~~~~i~~~~~~pVliv~~~~~~ 162 (164)
.-.+..+..++|..++|..+-..-.++. -..+...++.++...++++.+.+++
T Consensus 170 ~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~ 227 (269)
T PRK09802 170 QAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFN 227 (269)
T ss_pred HHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccC
Confidence 3445556666666666665543211111 1234455666666666666665543
No 397
>TIGR00930 2a30 K-Cl cotransporter.
Probab=43.06 E-value=2.4e+02 Score=25.01 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=26.3
Q ss_pred CCCCEEEEeccC--CcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 118 LKLDSLVMGSRG--LGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 118 ~~~dlivlg~~~--~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
.+++||++.-+. ++.......-+..+.+.+.. .|+++|+....
T Consensus 902 ~~a~lv~~~lp~p~~~~~~~~~Ym~~l~~lt~~l-~p~llvrGn~~ 946 (953)
T TIGR00930 902 RDAALVVLSLPVPRKGSISDELYMAWLEVLSEDL-PPVLLVRGNHR 946 (953)
T ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CCeEEEecCCc
Confidence 459999997543 22222223334566666666 59999987654
No 398
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=42.99 E-value=94 Score=20.32 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=24.7
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
+++|.+.|...|..++..+.+..... .++|+.....
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~e 36 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGYE 36 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-STB
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCcc
Confidence 57899999999999998888876663 5666654443
No 399
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=42.98 E-value=77 Score=19.31 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=35.8
Q ss_pred hhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 91 SRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 91 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
+.+.|+.++.......-...|.+..++.++|+||-...+... .-.|....+..-..++|++.
T Consensus 39 l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~---~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 39 LQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA---IRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCcc---CccHHHHHHHHHHhCCCEEe
Confidence 444677766533322234679999999999999986543221 11222344445555677763
No 400
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=42.94 E-value=1.1e+02 Score=21.20 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+++.|+.+.+....+++. ...++.....++|.+|+......... . .-..++..++|++.+-.
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~-----~-~~~~l~~~~ip~V~~~~ 88 (267)
T cd01536 15 QAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALT-----P-ALKKANAAGIPVVTVDS 88 (267)
T ss_pred HHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHH-----H-HHHHHHHCCCcEEEecC
Confidence 5667777777777777776654444442 24444444458999988643221111 0 12344567788888753
No 401
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=42.89 E-value=39 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=16.6
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccCCc
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRGLG 131 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~~~ 131 (164)
|+-.+++++.++ +.+..+|.+.+.+..
T Consensus 100 GDDi~~v~~~~~~~~~~pVi~v~tpgf~ 127 (407)
T TIGR01279 100 KMDLEGLAERLSTNFGVPVLFAPASGLD 127 (407)
T ss_pred HhhHHHHHHHHHHhhCCCEEEeeCCCcc
Confidence 555566666554 356777777666544
No 402
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=42.84 E-value=52 Score=26.02 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=12.1
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccC
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRG 129 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~ 129 (164)
|+-.+++.+.++ +.++.++.+.+.+
T Consensus 137 GdDi~~v~~e~~~~~~~~vi~v~t~g 162 (456)
T TIGR01283 137 GDDLEAVCKAAAEKTGIPVIPVDSEG 162 (456)
T ss_pred cCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 443444444433 3456666665544
No 403
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=42.73 E-value=1.1e+02 Score=21.12 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRII 137 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~ 137 (164)
...+.+.+.+++.|.+........ ...+.+.+...+ +|.|+++-.......+.+
T Consensus 44 ~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~--ad~I~~~GG~~~~~~~~l 98 (210)
T cd03129 44 EYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE--ADGIFVGGGNQLRLLSVL 98 (210)
T ss_pred HHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh--CCEEEEcCCcHHHHHHHH
Confidence 333455566666677665444332 244677777777 999999865444333333
No 404
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=42.60 E-value=1.2e+02 Score=21.61 Aligned_cols=58 Identities=9% Similarity=-0.086 Sum_probs=34.4
Q ss_pred HHHHHHhhhcCC--ceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHH
Q 031195 85 DLLDTASRQKEA--NIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNY 144 (164)
Q Consensus 85 ~~~~~~~~~~~~--~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~ 144 (164)
.++.+..++.|. ++=..+.-+.+.+.+..+... +|+|.+-+-..+...+.|..+..++
T Consensus 106 ~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~--vD~VLiMtV~PGfgGQ~f~~~~l~K 165 (228)
T PRK08091 106 ALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ--IDLIQILTLDPRTGTKAPSDLILDR 165 (228)
T ss_pred HHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh--cCEEEEEEECCCCCCccccHHHHHH
Confidence 344455555565 444444447899999999998 8877775544443333344433333
No 405
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=42.37 E-value=1.2e+02 Score=24.48 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=26.1
Q ss_pred ceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC
Q 031195 97 NIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 97 ~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
.+..+++.+.....|..-+...++|+|++.-+.-
T Consensus 305 ~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~G 338 (485)
T COG0069 305 KISVKLVAEHGVGTIAAGVAKAGADVITIDGADG 338 (485)
T ss_pred eEEEEEecccchHHHHhhhhhccCCEEEEcCCCC
Confidence 4777777787777777767888999999965543
No 406
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=42.29 E-value=1.4e+02 Score=22.16 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C------------ChhHHHHHHHhhCCCCEEEEec---cCCcccchhcccchhHH
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G------------DARERLLEAIEDLKLDSLVMGS---RGLGTVRRIILGSVSNY 144 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g------------~~~~~I~~~a~~~~~dlivlg~---~~~~~~~~~~~~s~~~~ 144 (164)
+.-.++.+.+...|+.+|.++.. | .-.+...+++++.++|.|.++- |+.......+--.....
T Consensus 118 ~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~ 197 (286)
T PRK08610 118 ATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEE 197 (286)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHH
Confidence 44456777788888988887644 1 2367888999999999998863 22221111121224455
Q ss_pred HhhcCCccEEE
Q 031195 145 VMTHAPCPVTI 155 (164)
Q Consensus 145 i~~~~~~pVli 155 (164)
|-...++|+.+
T Consensus 198 I~~~~~vPLVL 208 (286)
T PRK08610 198 IGLSTGLPLVL 208 (286)
T ss_pred HHHHHCCCEEE
Confidence 66667888744
No 407
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=42.23 E-value=1.2e+02 Score=21.23 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
......+.+.+.+.|..+......+++. ...++.+...++|-++++......... . -..+...++|++.+-.
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~-----~-l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVP-----A-VKAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHH-----H-HHHHHHCCCcEEEEcc
Confidence 4666677777777777765433333443 345555666789998886432111000 1 1234566889988843
No 408
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=42.15 E-value=36 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=27.1
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
...+.+..++.++|.|++|+-+-+.+ ++.+-+...+||+
T Consensus 163 ~~~~~~a~~edgAeaIiLGCAGms~l--------a~~Lq~~~gvPVI 201 (230)
T COG4126 163 VIEAAEALKEDGAEAIILGCAGMSDL--------ADQLQKAFGVPVI 201 (230)
T ss_pred HHHHHHHhhhcCCCEEEEcCccHHHH--------HHHHHHHhCCCcc
Confidence 44566668889999999998876544 4555555556653
No 409
>PHA02546 47 endonuclease subunit; Provisional
Probab=42.07 E-value=57 Score=24.66 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGD 106 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~ 106 (164)
..++++.+.+.+.++ +..+..||
T Consensus 26 ~~l~~ii~~a~~~~v--D~VliaGD 48 (340)
T PHA02546 26 KFIKQAIEYSKAHGI--TTWIQLGD 48 (340)
T ss_pred HHHHHHHHHHHHcCC--CEEEECCc
Confidence 455555555555433 34444443
No 410
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=41.79 E-value=1e+02 Score=20.52 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=22.6
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHH----HhhCCCCEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEA----IEDLKLDSLVMG 126 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dlivlg 126 (164)
.+...+++.|.++.....-.|-.+.|.+. +...++|+|++.
T Consensus 26 ~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVItt 70 (163)
T TIGR02667 26 YLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILIT 70 (163)
T ss_pred HHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 34555666677666544344333333333 333579998885
No 411
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.78 E-value=1.4e+02 Score=21.92 Aligned_cols=28 Identities=11% Similarity=0.050 Sum_probs=15.3
Q ss_pred CCccHHHHHHHHHHhcCCC-CCeEEEEEE
Q 031195 13 FSPSSKFALSWAVNNLLDK-GDTLYIIHI 40 (164)
Q Consensus 13 ~s~~~~~al~~a~~la~~~-~~~l~ll~v 40 (164)
|+..+-.+...|..++... +..+.++..
T Consensus 204 GvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 204 GVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3334555666666665542 356666654
No 412
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=41.75 E-value=1.2e+02 Score=21.17 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+.+.+.+++.|..+.......+.. ..+++.....++|.+|+....... . . .-..+...+.|++++
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-~-----~-~~~~~~~~~ipvV~~ 85 (266)
T cd06282 15 AECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAAT-S-----P-ALDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCc-h-----H-HHHHHhhCCCCEEEE
Confidence 4566677777777777766543333332 244555556788988886432111 1 1 123445667887766
No 413
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=41.69 E-value=65 Score=18.08 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=21.7
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeE
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTL 35 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l 35 (164)
++|.++.|.......+...+.+.....+..+
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~ 74 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRV 74 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEE
Confidence 8899999998877666666666555444443
No 414
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=41.67 E-value=28 Score=27.25 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred ChhHHHHHHHhhCCCCEEEEecc
Q 031195 106 DARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+-.+.|+++|++.++||+|+|..
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCc
Confidence 35689999999999999999965
No 415
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=41.61 E-value=38 Score=19.52 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.7
Q ss_pred chhHHHhhcCCccEEEEeCCCC
Q 031195 140 SVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 140 s~~~~i~~~~~~pVliv~~~~~ 161 (164)
...++++++++-||.+.+++..
T Consensus 30 GaVdK~vkna~ePvyi~R~~~P 51 (79)
T PF10808_consen 30 GAVDKIVKNAQEPVYIYRAKNP 51 (79)
T ss_pred cchHHHhcCCCCcEEEEecCCc
Confidence 3578999999999999997654
No 416
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=41.60 E-value=1e+02 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.184 Sum_probs=21.3
Q ss_pred EecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 102 IYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 102 ~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.+.|.+..+-+..+.+.++|.+|+|+.
T Consensus 177 ~VdGGI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 177 QVDGGINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEchH
Confidence 445777777777888889999999964
No 417
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.58 E-value=2e+02 Score=24.78 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccc
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~ 134 (164)
..+++..+.+..++.+...-...+. ...++.. .++|+|++.+.+++...
T Consensus 230 A~eQL~~~a~~~gvpv~~~~~~~~l-~~al~~~--~~~D~VLIDTAGRs~~d 278 (767)
T PRK14723 230 ALEQLRIYGRILGVPVHAVKDAADL-RFALAAL--GDKHLVLIDTVGMSQRD 278 (767)
T ss_pred HHHHHHHHHHhCCCCccccCCHHHH-HHHHHHh--cCCCEEEEeCCCCCccC
Confidence 4566666777667665431111122 2222222 35799999888866543
No 418
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=41.57 E-value=1.6e+02 Score=22.61 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+..+.+.+... -+++. +.........++.+.+.+.|.|.|.-.-.. ..+ -.+.+.+++..++||+++-.
T Consensus 12 l~R~~i~~~l~~~-~~i~v-v~~a~ng~~a~~~~~~~~PDVi~ld~emp~-mdg---l~~l~~im~~~p~pVimvss 82 (350)
T COG2201 12 LMRKVISDILNSD-PDIEV-VGTARNGREAIDKVKKLKPDVITLDVEMPV-MDG---LEALRKIMRLRPLPVIMVSS 82 (350)
T ss_pred HHHHHHHHHHhcC-CCeEE-EEecCCHHHHHHHHHhcCCCEEEEeccccc-ccH---HHHHHHHhcCCCCcEEEEec
Confidence 4445555555544 33443 333455566778888889999999843221 111 12468899999999999864
No 419
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=41.43 E-value=93 Score=19.79 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=23.1
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMG 126 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg 126 (164)
..+.+.+++.|.++.....-.|-.++|.+..++ .++|+|+..
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 345556677777766654444443344444222 138988885
No 420
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=41.14 E-value=48 Score=19.51 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
+.+.+.+.+.|+++..+.......+.-+....-..+|++++.....
T Consensus 18 e~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 18 EALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 5566777777887776665533222223222223399999976543
No 421
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.13 E-value=1.6e+02 Score=22.47 Aligned_cols=78 Identities=6% Similarity=0.003 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEE-ec--C-C--------------hhHHHHHHHh-hCCCCEEEEeccCCccc-chh----
Q 031195 81 IDALDLLDTASRQKEANIVAKI-YW--G-D--------------ARERLLEAIE-DLKLDSLVMGSRGLGTV-RRI---- 136 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~-~~--g-~--------------~~~~I~~~a~-~~~~dlivlg~~~~~~~-~~~---- 136 (164)
...+.++.+.|+..|+.+-..+ .. | . +..++-..++ +.++|++=+-.+....+ +++
T Consensus 142 ~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~ 221 (340)
T PRK12858 142 HAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFE 221 (340)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccccc
Confidence 4677888899999998876542 11 1 1 1222222333 58999998876654311 110
Q ss_pred -ccc-----chhHHHhhcCCccEEEEeC
Q 031195 137 -ILG-----SVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 137 -~~~-----s~~~~i~~~~~~pVliv~~ 158 (164)
..+ ....++...++.|+++.-.
T Consensus 222 ~~~~~~~~~~~f~~~~~a~~~P~vvlsg 249 (340)
T PRK12858 222 EAYTQEEAFKLFREQSDATDLPFIFLSA 249 (340)
T ss_pred ccccHHHHHHHHHHHHhhCCCCEEEECC
Confidence 000 2345667789999999743
No 422
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=41.05 E-value=84 Score=21.80 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=7.2
Q ss_pred HHHhhCCCCEEEEecc
Q 031195 113 EAIEDLKLDSLVMGSR 128 (164)
Q Consensus 113 ~~a~~~~~dlivlg~~ 128 (164)
+.++..++..|++...
T Consensus 127 dl~~~l~~pvilV~~~ 142 (222)
T PRK00090 127 DLAKQLQLPVILVVGV 142 (222)
T ss_pred HHHHHhCCCEEEEECC
Confidence 3444444444444433
No 423
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.03 E-value=1.6e+02 Score=22.33 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.0
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcc
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
...|.++..+.++|.||+.+...+.
T Consensus 114 l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 114 LLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHhccCCCEEEEcCCChHH
Confidence 6778899999999999999876653
No 424
>PRK09222 isocitrate dehydrogenase; Validated
Probab=40.58 E-value=2e+02 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHhcCCCCC-eEEEEE
Q 031195 15 PSSKFALSWAVNNLLDKGD-TLYIIH 39 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~-~l~ll~ 39 (164)
+.+...+++|+++|+..+. +|+++|
T Consensus 149 ~~~eRI~r~AFe~A~~r~rkkVt~v~ 174 (482)
T PRK09222 149 PGSEKIIRYAFEYARANGRKKVTCLT 174 (482)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3578899999999988754 688887
No 425
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.28 E-value=1.3e+02 Score=23.08 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHhhhcCCceEEE-EecCChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCC-ccEEEEeCC
Q 031195 89 TASRQKEANIVAK-IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAP-CPVTIVKDP 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~-~pVliv~~~ 159 (164)
+.+.+.+.-+=.- +..-...++|++.|++.+..+|+..+.+...... -++......+..+.+ +||-+-=++
T Consensus 11 ~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDH 84 (347)
T PRK09196 11 DHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDH 84 (347)
T ss_pred HHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 3344444433332 3334789999999999999999988765432222 234556777777776 898765443
No 426
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=40.12 E-value=1.2e+02 Score=20.55 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhC--CCCEEEEec
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDL--KLDSLVMGS 127 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dlivlg~ 127 (164)
..++.+.+-..+.++-+-.-+...+-.+.|....+.. +||..++-.
T Consensus 46 ~~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~~ 93 (164)
T PF11965_consen 46 EALEECEAAIARADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIFE 93 (164)
T ss_pred HHHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEEc
Confidence 4556666666666665555444456666666665544 566666543
No 427
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=40.04 E-value=75 Score=22.56 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=30.3
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC--ccEEEEeCCCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP--CPVTIVKDPSF 161 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~--~pVliv~~~~~ 161 (164)
.+.+.+.+.+.+.|.|++|.+..-. . ....+.. ++++.. .||++.|....
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~-~--~~~~~~~-~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS-S--TLDNVVR-LIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh-h--hHHHHHH-HHHHhcCCCCEEEeCCCcc
Confidence 4557777887889999998654221 1 1122223 344333 89999887653
No 428
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.92 E-value=78 Score=24.57 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=13.6
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccCC
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRGL 130 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~~ 130 (164)
|+-.+.+.+.++ +.++.++.+.+.+.
T Consensus 102 GdDi~~v~~~~~~~~~~~vi~v~t~gf 128 (410)
T cd01968 102 GDDIDAVCKTASEKFGIPVIPVHSPGF 128 (410)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEECCCc
Confidence 444445554443 34566666665553
No 429
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=39.91 E-value=1.8e+02 Score=22.71 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+...+.+.+-+.+.|+.+...-....-..+|++.+.+ ++-+++|++..+
T Consensus 261 ~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~--a~~~vvGsPT~~ 309 (388)
T COG0426 261 EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILD--AKGLVVGSPTIN 309 (388)
T ss_pred HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhh--cceEEEecCccc
Confidence 3555677788888899999877777788899999998 999999988643
No 430
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=39.88 E-value=77 Score=22.49 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=5.7
Q ss_pred HHHHHhhCCCCEEEE
Q 031195 111 LLEAIEDLKLDSLVM 125 (164)
Q Consensus 111 I~~~a~~~~~dlivl 125 (164)
+++.+++.++|++|+
T Consensus 23 l~~~~~~~~~D~vv~ 37 (224)
T cd07388 23 LVGLAPETGADAIVL 37 (224)
T ss_pred HHHHHhhcCCCEEEE
Confidence 333333333444333
No 431
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=39.68 E-value=29 Score=28.20 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=19.4
Q ss_pred hhHHHHHHHhhCCCCEEEEec
Q 031195 107 ARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~ 127 (164)
..++|+..|++.++|+|++|.
T Consensus 40 tFeEIl~iA~e~~VDmiLlGG 60 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGG 60 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecC
Confidence 478999999999999999995
No 432
>PRK08005 epimerase; Validated
Probab=39.63 E-value=1.2e+02 Score=21.38 Aligned_cols=46 Identities=11% Similarity=0.025 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...++++++..+... +.. .-+.|.+...-+..+.+.++|.+|+|+.
T Consensus 148 ~~~~~KI~~l~~~~~-~~~-I~VDGGI~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 148 AAMCEKVSQSREHFP-AAE-CWADGGITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred HHHHHHHHHHHHhcc-cCC-EEEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 455555554433221 112 3344777777777888889999999954
No 433
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=39.58 E-value=1.6e+02 Score=22.01 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=27.3
Q ss_pred cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 104 WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 104 ~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.|...+...+....+ +|+||+-....+ ..+.+.+.+++||+=.
T Consensus 79 kgEsl~Dt~~vls~y-~D~iviR~~~~~---------~~~~~a~~~~vPVINa 121 (302)
T PRK14805 79 KRESVADFAANLSCW-ADAIVARVFSHS---------TIEQLAEHGSVPVINA 121 (302)
T ss_pred CCcCHHHHHHHHHHh-CCEEEEeCCChh---------HHHHHHHhCCCCEEEC
Confidence 354455555555555 999999754443 3566677788887643
No 434
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=39.37 E-value=61 Score=23.44 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=32.1
Q ss_pred EecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 102 IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 102 ~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
....+..+.+.+......+|-+|+.....+..-.. .-...+-+..+.|||+
T Consensus 160 l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~---~el~~a~~~~~~pvlv 210 (263)
T COG0434 160 LGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDL---EELKLAKEAVDTPVLV 210 (263)
T ss_pred cCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCH---HHHHHHHhccCCCEEE
Confidence 33346777888888999999999975554432211 1234444556688876
No 435
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=39.36 E-value=1.6e+02 Score=21.88 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=44.4
Q ss_pred HHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCccc-ch-hcccchhHHHhhcCC--ccEEEEeCC
Q 031195 89 TASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTV-RR-IILGSVSNYVMTHAP--CPVTIVKDP 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~-~~-~~~~s~~~~i~~~~~--~pVliv~~~ 159 (164)
+.+.+.+.-+=.--.. -...+++++.|++.+..+|+-.+.+.... .+ -.+......+.++.. +||.+-=++
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (285)
T PRK07709 11 NKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDH 86 (285)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 3344444433332333 37899999999999999999887654322 11 123456777777766 788765443
No 436
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.30 E-value=1.6e+02 Score=21.87 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C------------ChhHHHHHHHhhCCCCEEEEec---cCCcccchhcccchhHH
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G------------DARERLLEAIEDLKLDSLVMGS---RGLGTVRRIILGSVSNY 144 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g------------~~~~~I~~~a~~~~~dlivlg~---~~~~~~~~~~~~s~~~~ 144 (164)
+.-.++.+.+...|+.++.++.. | .-.+...+++++.++|.|-+.- |+...... +--...+.
T Consensus 115 ~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~-l~~~~l~~ 193 (283)
T PRK07998 115 AFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPR-IDIPLLKR 193 (283)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCC-cCHHHHHH
Confidence 44456777788889888776644 1 1356678999999999998864 22221111 11235667
Q ss_pred HhhcCCccEEEE
Q 031195 145 VMTHAPCPVTIV 156 (164)
Q Consensus 145 i~~~~~~pVliv 156 (164)
|-..+++|+.+-
T Consensus 194 I~~~~~vPLVlH 205 (283)
T PRK07998 194 IAEVSPVPLVIH 205 (283)
T ss_pred HHhhCCCCEEEe
Confidence 777788997654
No 437
>PRK08417 dihydroorotase; Provisional
Probab=39.23 E-value=64 Score=24.80 Aligned_cols=29 Identities=0% Similarity=-0.239 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 17 SKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 17 ~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
...++..++.+|+..+++++++|+-....
T Consensus 180 E~~~v~~~~~la~~~~~~lhi~hvS~~~~ 208 (386)
T PRK08417 180 ETKEVAKMKELAKFYKNKVLFDTLALPRS 208 (386)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCHHH
Confidence 34678999999999999999999966543
No 438
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=39.21 E-value=1.3e+02 Score=21.02 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|.++.......++. ...++.....++|-||+-....... ....+....+.||+.+-.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-------~~~~l~~~~~ipvV~i~~ 87 (269)
T cd06275 15 AEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQP-------LLAMLERYRHIPMVVMDW 87 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChH-------HHHHHHhcCCCCEEEEec
Confidence 4666777787887777665433233443 2455566667899888854322110 112233345788888854
No 439
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=39.17 E-value=73 Score=22.43 Aligned_cols=34 Identities=9% Similarity=-0.183 Sum_probs=25.9
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++||+++.+|-.+.++.+....+. . +.+|.++-
T Consensus 19 ~k~IllgVtGSIAAyk~~~lvr~L~-~-g~~V~Vvm 52 (209)
T PLN02496 19 KPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAVV 52 (209)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHhc-C-CCeEEEEE
Confidence 5789999999999999888777664 3 66665543
No 440
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=39.11 E-value=1.4e+02 Score=23.02 Aligned_cols=96 Identities=13% Similarity=0.092 Sum_probs=47.3
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
++|+|++++.= +.++. +.|.+..|-.|+.++..-...... . . ..-...+.+
T Consensus 1 ~kV~vamSGGV--DSsva--A~LLk~~G~~V~Gv~m~~~~~~~~-----------------~----~----~~c~~~~d~ 51 (356)
T PF03054_consen 1 KKVLVAMSGGV--DSSVA--AALLKEQGYDVIGVTMRNWDEEDE-----------------S----G----KSCCSEEDI 51 (356)
T ss_dssp -EEEEE--SSH--HHHHH--HHHHHHCT-EEEEEEEE-SS-SSS-----------------H----H-----HHHHHHHH
T ss_pred CeEEEEccCCH--HHHHH--HHHHHhhcccceEEEEEEeccccc-----------------c----C----CCCCchhhH
Confidence 58899988854 43332 334566788999998765543110 0 0 000112344
Q ss_pred HHHHHHhhhcCCceEEEEe-----------------cC---Ch---------hHHHHHHHhh-CCCCEEEEeccC
Q 031195 85 DLLDTASRQKEANIVAKIY-----------------WG---DA---------RERLLEAIED-LKLDSLVMGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~-----------------~g---~~---------~~~I~~~a~~-~~~dlivlg~~~ 129 (164)
+.+++.++..|+++...-. .| +| ...++++|.+ .++|.|..|.+-
T Consensus 52 ~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYA 126 (356)
T PF03054_consen 52 EDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYA 126 (356)
T ss_dssp HHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SE
T ss_pred HHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeE
Confidence 5555666666665544321 12 11 5678899999 999999999753
No 441
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.10 E-value=1.5e+02 Score=21.37 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......+++. ..+++.+...++|-||+.......... ..+ .+...++||+.+-.
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~-----~l~-~l~~~~ipvV~~~~ 88 (288)
T cd01538 15 IRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALAS-----AVE-KAADAGIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHH-----HHH-HHHHCCCCEEEECC
Confidence 5667778888888887766644433442 355555666789999886432211111 122 24456789888843
No 442
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=39.01 E-value=75 Score=22.08 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=50.4
Q ss_pred HHHHHHHhhhcCCceEEEEecCC----hhHHHHHHHhhCCCCEEEEeccCCc------------ccc---hhcccchhHH
Q 031195 84 LDLLDTASRQKEANIVAKIYWGD----ARERLLEAIEDLKLDSLVMGSRGLG------------TVR---RIILGSVSNY 144 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~----~~~~I~~~a~~~~~dlivlg~~~~~------------~~~---~~~~~s~~~~ 144 (164)
...+.+.+.+.|.++....++.. ....+.+.....++|.|++.+...- .+. -+.+|..+..
T Consensus 129 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~ 208 (231)
T PF02602_consen 129 RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSPSAVRAFLELLKKNGALLKRVPIVAIGPRTAK 208 (231)
T ss_dssp CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHHHTTSEEEESSHHHHH
T ss_pred cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEECHHHHH
Confidence 34456666677777666555543 5667777777788999999876411 011 1346778888
Q ss_pred HhhcCCccEEEEeCCC
Q 031195 145 VMTHAPCPVTIVKDPS 160 (164)
Q Consensus 145 i~~~~~~pVliv~~~~ 160 (164)
.+++..+++.+++..+
T Consensus 209 ~l~~~g~~~~~va~~~ 224 (231)
T PF02602_consen 209 ALRELGFKVDIVAERP 224 (231)
T ss_dssp HHHHTT-SCSEEESSS
T ss_pred HHHHcCCCceEECCCC
Confidence 8888888887776654
No 443
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=38.78 E-value=2.1e+02 Score=23.04 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc------CCccEEEE
Q 031195 84 LDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH------APCPVTIV 156 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~------~~~pVliv 156 (164)
.+++.+.++..+++++...-.. .-+..+.+.+...++|.||+. .|.+.+.+ +.+-++.. .+.|+-++
T Consensus 132 ~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~v-GGDGTlnE-----VvNGL~~~~~~~~~~~~pLGiI 205 (481)
T PLN02958 132 FDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCV-SGDGILVE-----VVNGLLEREDWKTAIKLPIGMV 205 (481)
T ss_pred HHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEE-cCCCHHHH-----HHHHHhhCccccccccCceEEe
Confidence 3467778888888877654443 445666666666778877764 44444444 33444432 35888888
Q ss_pred eC
Q 031195 157 KD 158 (164)
Q Consensus 157 ~~ 158 (164)
|-
T Consensus 206 Pa 207 (481)
T PLN02958 206 PA 207 (481)
T ss_pred cC
Confidence 84
No 444
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.74 E-value=1.4e+02 Score=21.06 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+++.|.++......+++. ...++.+...++|.+|++......... .-..+...++||+++-
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~------~l~~~~~~~ipvV~~~ 87 (277)
T cd06319 15 QIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVT------LLKLAAQAKIPVVIAD 87 (277)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHH------HHHHHHHCCCCEEEEe
Confidence 4666777778888887765433334443 233444455789999886432211111 1234556788998874
No 445
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=38.71 E-value=1.5e+02 Score=22.26 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=45.2
Q ss_pred HHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccc-hhcccchhHHHhhcCC-ccEEEEeCCC
Q 031195 89 TASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVR-RIILGSVSNYVMTHAP-CPVTIVKDPS 160 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~-~~~~~s~~~~i~~~~~-~pVliv~~~~ 160 (164)
+.+.+.+..+=.--..+ ...+++++.|++.+..+|+..+.+..... .-.+......+..+.+ +||.+-=++.
T Consensus 10 ~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg 84 (307)
T PRK05835 10 LKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHG 84 (307)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 33444444333323333 78999999999999999998766543211 1123346666778886 8998754443
No 446
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=38.61 E-value=48 Score=22.65 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=25.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
||++++.|+-.+.++.+..-.|.+ .+..++++-
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~-~g~~V~vv~ 33 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE-AGVEVHLVI 33 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 689999999999999888888754 456654443
No 447
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=38.60 E-value=1.4e+02 Score=21.07 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+++.|+++......++. ...+++.+...++|-||+.......... .. ..+...+.||+.+-.
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~i-~~~~~~~iPvV~~~~ 88 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDP-----VL-KEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchH-----HH-HHHHHCCCCEEEEec
Confidence 577788888888888877764333333 3345666677789999886432211111 11 234566789988854
No 448
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=38.54 E-value=1.5e+02 Score=21.25 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
++.+..++.|.+.=..+.-+.+.+.+..+... +|+|.+-+-..+
T Consensus 99 ~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~--vD~VLvMsV~PG 142 (229)
T PRK09722 99 RLIDEIRRAGMKVGLVLNPETPVESIKYYIHL--LDKITVMTVDPG 142 (229)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh--cCEEEEEEEcCC
Confidence 44455566666665555557889999999998 887766544333
No 449
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.48 E-value=1.4e+02 Score=20.96 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+++.|..+......++. ....++...+.++|.|++....... ...+ -+...+.||+.+-
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~-------~~~~-~~~~~~ipvV~i~ 85 (270)
T cd06296 15 SEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS-------AQRA-ALRRTGIPFVVVD 85 (270)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh-------HHHH-HHhcCCCCEEEEe
Confidence 566777777787777776654433333 3345555667789988876432211 1123 3355678888874
No 450
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=38.36 E-value=1.7e+02 Score=21.92 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=30.2
Q ss_pred CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
|...+...+....+++|.||+-....+ ..+.+.+.+++||+=.
T Consensus 87 gEs~~Dta~vls~y~~D~iv~R~~~~~---------~~~~~a~~~~vPVINa 129 (305)
T PRK00856 87 GETLADTIRTLSAMGADAIVIRHPQSG---------AARLLAESSDVPVINA 129 (305)
T ss_pred CcCHHHHHHHHHhcCCCEEEEeCCChH---------HHHHHHHHCCCCEEEC
Confidence 556667777777778999999754332 4566777788888744
No 451
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=38.21 E-value=79 Score=19.89 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=26.7
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYI 37 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~l 37 (164)
-|||.+--|..-..+.||..|+.-|+..+..+.+
T Consensus 70 EKRIvITGD~DIDhDqaLa~aI~eAk~q~Pdm~V 103 (114)
T PF05902_consen 70 EKRIVITGDADIDHDQALAQAIKEAKEQHPDMSV 103 (114)
T ss_pred EEEEEEecCCCcchHHHHHHHHHHHHHhCCCceE
Confidence 3788888888877788999999999986654433
No 452
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=38.20 E-value=1.4e+02 Score=20.98 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhh-cCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQ-KEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~-~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+ .|+.+......+++. ...++.....++|-+|+......... . .-..+.+.+.|++.+-
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~-~~~~l~~~~iPvv~~~ 88 (272)
T cd06301 15 TLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATA-----P-IVKAANAAGIPLVYVN 88 (272)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhH-----H-HHHHHHHCCCeEEEec
Confidence 4566667777777 666666533333442 34445556678999998654322111 1 1233567789999885
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 89 ~ 89 (272)
T cd06301 89 R 89 (272)
T ss_pred C
Confidence 4
No 453
>PRK03670 competence damage-inducible protein A; Provisional
Probab=38.15 E-value=1.6e+02 Score=21.44 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh---CCCCEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIED---LKLDSLVMG 126 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dlivlg 126 (164)
.....+.+.+...|+++......+|-.+.|.+..++ ..+|+||+.
T Consensus 20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVItt 67 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVIS 67 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEEC
Confidence 334457777888899888766667666666666443 247988885
No 454
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=38.10 E-value=1.2e+02 Score=19.97 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHHHhhhcCCceEEEEe--cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 77 VKTDIDALDLLDTASRQKEANIVAKIY--WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
........+.+.+.+.+.|++++..-- +|...+.|-+...+ +|-+|+..-..+.-+- -....+...++|++
T Consensus 24 ~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~--~dgiIINpga~thtS~-----Ai~DAl~~~~~P~v 96 (140)
T PF01220_consen 24 TTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDD--VDGIIINPGAYTHTSI-----AIRDALKAISIPVV 96 (140)
T ss_dssp SSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCT--TSEEEEE-GGGGHT-H-----HHHHHHHCCTS-EE
T ss_pred cCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhh--CCEEEEccchhccccH-----HHHHHHHcCCCCEE
Confidence 344567777788888887766664221 13444444444444 9999997543332111 23456777889988
Q ss_pred EEe
Q 031195 155 IVK 157 (164)
Q Consensus 155 iv~ 157 (164)
=|+
T Consensus 97 EVH 99 (140)
T PF01220_consen 97 EVH 99 (140)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 455
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=38.07 E-value=1.7e+02 Score=21.78 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C---C-----------hhHHHHHHHhhCCCCEEEEec---cCCcccchhcccchh
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G---D-----------ARERLLEAIEDLKLDSLVMGS---RGLGTVRRIILGSVS 142 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g---~-----------~~~~I~~~a~~~~~dlivlg~---~~~~~~~~~~~~s~~ 142 (164)
+.-.++.+.+...|+.++.++.. | + -.+...+++++.++|.|.+.- ||.......+--...
T Consensus 115 ~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l 194 (286)
T PRK12738 115 KLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRL 194 (286)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHH
Confidence 44456777788888888877644 1 1 246778889999999998853 332221112223355
Q ss_pred HHHhhcCCccEEE
Q 031195 143 NYVMTHAPCPVTI 155 (164)
Q Consensus 143 ~~i~~~~~~pVli 155 (164)
+.|-+.+++|+.+
T Consensus 195 ~~I~~~~~vPLVL 207 (286)
T PRK12738 195 AEIREVVDVPLVL 207 (286)
T ss_pred HHHHHHhCCCEEE
Confidence 6677777899744
No 456
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=38.01 E-value=1.3e+02 Score=22.94 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHhcCCC-CCeEEEEEE
Q 031195 16 SSKFALSWAVNNLLDK-GDTLYIIHI 40 (164)
Q Consensus 16 ~~~~al~~a~~la~~~-~~~l~ll~v 40 (164)
.++..+++|+++|+.. ..+|+++|=
T Consensus 161 ~~eRi~r~AF~~A~~r~~k~Vt~v~K 186 (348)
T PF00180_consen 161 GIERIARFAFEYARKRGRKKVTVVHK 186 (348)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEec
Confidence 4778999999999997 789999984
No 457
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=37.90 E-value=1.4e+02 Score=21.52 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=27.3
Q ss_pred hhHHHHHHHhhCCCCE-EEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 107 ARERLLEAIEDLKLDS-LVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dl-ivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+.+.+.+++ +|+ ||||++..-.... +.. ...+....+|+++.+.+
T Consensus 162 ~~~~~~~~~~~--~DlllviGTSl~V~pa~----~l~-~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 162 YMDEIESVMSK--TDLFVAVGTSGNVYPAA----GFV-GRAQFYGATTLELNLEE 209 (242)
T ss_pred cHHHHHHHHHh--CCEEEEEccCCccccHH----HHH-HHHHHcCCeEEEECCCC
Confidence 35566666666 898 6667664332111 111 23456678999887655
No 458
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=37.84 E-value=1.9e+02 Score=22.32 Aligned_cols=24 Identities=4% Similarity=-0.094 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.+...+++|+++|+..+.+|+++|
T Consensus 167 ~~~Ri~r~Af~~A~~r~~~Vt~v~ 190 (358)
T PRK00772 167 EIERIARVAFELARKRRKKVTSVD 190 (358)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEE
Confidence 467889999999987666888887
No 459
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=37.82 E-value=79 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=17.7
Q ss_pred CChhHHHHHHH-hhCCCCEEEEeccCCc
Q 031195 105 GDARERLLEAI-EDLKLDSLVMGSRGLG 131 (164)
Q Consensus 105 g~~~~~I~~~a-~~~~~dlivlg~~~~~ 131 (164)
|+-.+++.+.+ ++.++.+|.+-+.|-.
T Consensus 113 GdDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 113 KMDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 54455665544 4678999988876644
No 460
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=37.78 E-value=1.6e+02 Score=21.47 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..++|||...+++... .....++........+.+..|.-+. ..
T Consensus 169 ~~~~iLi~~GG~d~~~-~~~~~l~~l~~~~~~~~i~vv~G~~------------------------------------~~ 211 (279)
T TIGR03590 169 PLRRVLVSFGGADPDN-LTLKLLSALAESQINISITLVTGSS------------------------------------NP 211 (279)
T ss_pred ccCeEEEEeCCcCCcC-HHHHHHHHHhccccCceEEEEECCC------------------------------------Cc
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..+.+.+.....+ .+..-...+.+.+.... +|++|.. +..+-.=+-.+.+|++++|
T Consensus 212 ~~~~l~~~~~~~~-----~i~~~~~~~~m~~lm~~--aDl~Is~------------~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 212 NLDELKKFAKEYP-----NIILFIDVENMAELMNE--ADLAIGA------------AGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred CHHHHHHHHHhCC-----CEEEEeCHHHHHHHHHH--CCEEEEC------------CchHHHHHHHcCCCEEEEE
No 461
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=37.67 E-value=41 Score=22.95 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=18.0
Q ss_pred eEEEEeCCCccHHHHHHHHH-HhcCCCCCeEEEEEEecC
Q 031195 6 KIGVALDFSPSSKFALSWAV-NNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~-~la~~~~~~l~ll~v~~~ 43 (164)
+|+|.-.++..-...+..++ +.+++.+.++..+--+..
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~ 40 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQT 40 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEe
Confidence 45555444444333333332 233446777776664433
No 462
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=37.44 E-value=1.1e+02 Score=19.97 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=23.4
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHH----HhhCCCCEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEA----IEDLKLDSLVMG 126 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dlivlg 126 (164)
.+.+.+++.|.++.....-.|-.+.|.+. .++.++|+||+.
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 35666777777666544444333334333 332269998885
No 463
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=37.39 E-value=1.7e+02 Score=21.68 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=49.7
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
-++=.+..-+..++.-.+..|+++.---...+.... |.. +-...+.+..+.+..
T Consensus 52 PCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSP-----YsF---------------------QGlge~gL~~l~~a~ 105 (286)
T COG2876 52 PCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSP-----YSF---------------------QGLGEEGLKLLKRAA 105 (286)
T ss_pred CcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCc-----ccc---------------------cccCHHHHHHHHHHH
Confidence 344445545555555566667766555555554321 111 011146777788888
Q ss_pred hhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 92 RQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
...|..+.+++..-.-.+.+.+| +|+|=+|.+.
T Consensus 106 ~~~Gl~vvtEvm~~~~~e~~~~y-----~DilqvGARN 138 (286)
T COG2876 106 DETGLPVVTEVMDVRDVEAAAEY-----ADILQVGARN 138 (286)
T ss_pred HHcCCeeEEEecCHHHHHHHHhh-----hhHHHhcccc
Confidence 88899999888765444444443 5666666554
No 464
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=37.36 E-value=47 Score=23.50 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=31.5
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHh---hcCCccEEEEeCCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVM---THAPCPVTIVKDPS 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~---~~~~~pVliv~~~~ 160 (164)
...+.|++.|...+..++|+|.+-... +-..++ +...+||=++++.+
T Consensus 64 q~sd~il~~ad~~dVa~LVVGdPfgAT--------THsDlvlRAk~~~ipv~vIHNAS 113 (272)
T KOG3123|consen 64 QESDKILDEADKEDVAFLVVGDPFGAT--------THSDLVLRAKELGIPVEVIHNAS 113 (272)
T ss_pred hhHHHHhhhhhhcceEEEEecCccccc--------chhhhheehhhcCCCeEEEechH
Confidence 347889999999999999999652221 111222 34458888887754
No 465
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=37.35 E-value=1.3e+02 Score=21.64 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=39.0
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcc-----cchhHHHhhcCCccEEEEeCCCCCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIIL-----GSVSNYVMTHAPCPVTIVKDPSFGK 163 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~-----~s~~~~i~~~~~~pVliv~~~~~~~ 163 (164)
.....+..+..++|..++|..+-....++.- ..+...++..+...++++-+..+++
T Consensus 153 G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~ 213 (253)
T COG1349 153 GPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGR 213 (253)
T ss_pred cHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCC
Confidence 5566777888899999999887654322222 2356677888888888887766654
No 466
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.33 E-value=79 Score=25.53 Aligned_cols=43 Identities=7% Similarity=0.191 Sum_probs=31.6
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA 149 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~ 149 (164)
.+++.-+++|+.+++|.|.|.+-|+..-...+.++.+. +++-.
T Consensus 453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k-~~~~~ 495 (587)
T KOG0781|consen 453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAK-LIKVN 495 (587)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHH-HHhcC
Confidence 35788899999999999999988877666555555544 44433
No 467
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=37.31 E-value=62 Score=22.20 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGD 106 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~ 106 (164)
...++++.+.+.+.++. ..+..||
T Consensus 27 ~~~~~~~~~~~~~~~~d--~i~~~GD 50 (223)
T cd00840 27 FEAFEEIVELAIEEKVD--FVLIAGD 50 (223)
T ss_pred HHHHHHHHHHHHhcCCC--EEEECCc
Confidence 34455555555554433 3444444
No 468
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.14 E-value=35 Score=24.65 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 109 ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+.+.+..++.+.|++|+.++..... .+.-+..++...+.|.+|+-..+
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~P----GP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAP----GPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSH----HHHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCC----CcHHHHHHHHhCCCCEEEEcCCC
Confidence 3444555688999999987755422 23457889999999999987543
No 469
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=37.12 E-value=1.4e+02 Score=20.76 Aligned_cols=68 Identities=10% Similarity=0.170 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+++.|..+......+++ ...+++.....++|-+++....... .... .+ ..+.||+++-
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-------~~~~-~~-~~~ipvv~~~ 84 (267)
T cd06284 15 SEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPP-------TALT-AL-AKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCH-------HHHH-HH-hcCCCEEEEe
Confidence 566777888888888777654333344 4456667777889988884322110 0122 22 3378888874
No 470
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=36.98 E-value=1.5e+02 Score=21.02 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 80 DIDALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+..+.+++.+++.|+.-...+.. |+..+.+.+ -....+|+|++-.-.
T Consensus 93 ~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDliFIDadK 142 (219)
T COG4122 93 DEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDLVFIDADK 142 (219)
T ss_pred CHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccEEEEeCCh
Confidence 3466667777788888876666666 688888777 334569999998543
No 471
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.85 E-value=1.5e+02 Score=20.75 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhcCCceEEE-EecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAK-IYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~-~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+++.|..+.+. ...+++ ....++.+-..++|.||+.......... ..++ +...++||+.+-
T Consensus 14 ~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~-----~l~~-~~~~gIpvv~~d 87 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAP-----FLEK-AKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHH-----HHHH-HHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHH-----HHHH-HhhcCceEEEEe
Confidence 567778888888888888875 444555 3344555667789999998665543332 2233 555678999885
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 88 ~~ 89 (257)
T PF13407_consen 88 SD 89 (257)
T ss_dssp ST
T ss_pred cc
Confidence 44
No 472
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=36.83 E-value=1.8e+02 Score=21.88 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEecc---CCcccch----hcccchhHHHhhcCCcc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSR---GLGTVRR----IILGSVSNYVMTHAPCP 152 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~---~~~~~~~----~~~~s~~~~i~~~~~~p 152 (164)
.+++.+.+.....+..+-..+...+.. ..+.+.+++.++|.|-+... ....... ..+..+...+-...++|
T Consensus 88 ~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iP 167 (334)
T PRK07565 88 EYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIP 167 (334)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCc
Confidence 444444443333345555444333332 35555566678999999532 1111110 11223445566677899
Q ss_pred EEEE
Q 031195 153 VTIV 156 (164)
Q Consensus 153 Vliv 156 (164)
|++=
T Consensus 168 V~vK 171 (334)
T PRK07565 168 VAVK 171 (334)
T ss_pred EEEE
Confidence 8764
No 473
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=36.80 E-value=65 Score=17.85 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=15.6
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLL 29 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~ 29 (164)
++|.++.|.+...+.+.....+...
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~ 72 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLK 72 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhh
Confidence 4577777777776666655555443
No 474
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=36.80 E-value=68 Score=21.52 Aligned_cols=48 Identities=17% Similarity=0.007 Sum_probs=26.9
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
+...++.+-+.++||+|+..-++-.-.+.-+.+.... .-....|||+.
T Consensus 82 A~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~-A~~~giPVLt~ 129 (159)
T PF10649_consen 82 ASAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAA-ALAAGIPVLTA 129 (159)
T ss_pred HHHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHH-HHHCCCCEEEE
Confidence 4445555666789999998766553333222111111 22446888875
No 475
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=36.76 E-value=1.7e+02 Score=21.58 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=38.9
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc---ccchhcccchhHHHhhcCCccEEEEeC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG---TVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~---~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+.+.+.+.|+.++..+.. ++--...+ +|++++|..+-- ++-..+..-...-+.++.+.|+.++-.
T Consensus 173 m~~~L~~~~IPvtlvlDS-----aVgyvMe~--vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AE 240 (313)
T KOG1466|consen 173 MAKELKKLGIPVTLVLDS-----AVGYVMER--VDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAE 240 (313)
T ss_pred HHHHHHhcCCCeEEEehh-----hHHHHHhh--ccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEee
Confidence 455566678888875532 12222444 999999998743 333322222333455666799999864
No 476
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=36.68 E-value=1e+02 Score=20.74 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 85 DLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+.+.+.++..|.++-..... +...+.+.+..+. --.+++|.+|-+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~--k~~vl~G~SGvG 47 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG--KTSVLLGQSGVG 47 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT--SEEEEECSTTSS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC--CEEEEECCCCCC
Confidence 34556667777776554443 6778888888877 677888988765
No 477
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=36.63 E-value=85 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=14.7
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccCCc
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRGLG 131 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~~~ 131 (164)
|+-.+.+++.++ +.++.+|.+.+.+..
T Consensus 103 GdDi~~v~~~~~~~~~~~vi~v~t~gf~ 130 (406)
T cd01967 103 GDDIEAVAKEASKELGIPVIPVNCEGFR 130 (406)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCCee
Confidence 544444444433 456777777665543
No 478
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=36.37 E-value=97 Score=19.92 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMG 126 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg 126 (164)
..-..+.+.+++.|.++.......|-.+.|.+...+ .++|+||..
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~Vitt 63 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITT 63 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEc
Confidence 333556777777888777544444333344433322 236998884
No 479
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=36.06 E-value=1.5e+02 Score=20.63 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+.......++. ...++.....++|.+|+...... ......+...+.||+.+-.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~--------~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTIT--------DEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--------HHHHHHHhcCCCCEEEEec
Confidence 4667777777878887766543333443 23445556678999888643211 0122334555688887743
No 480
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=36.03 E-value=3.3e+02 Score=24.71 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec--CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW--GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
++-.+.|.+++...+++++.-.+. ..-.+.|++-.++.++|+ |+|+|.
T Consensus 657 ~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDI-vIGTHr 706 (1139)
T COG1197 657 QQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDI-VIGTHR 706 (1139)
T ss_pred HHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccE-EEechH
Confidence 466677888888888888865555 467889999999999998 567775
No 481
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=35.94 E-value=1.5e+02 Score=20.77 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.....+.+...|+++.. ..++-..+++++.+.+.+.+.+|+.....+
T Consensus 101 ~~~~e~v~~~~gl~~~~-PLw~~~~~el~~~~~~~G~~~~i~~v~~~~ 147 (218)
T TIGR03679 101 KSRIERICEELGLKVFA-PLWGRDQEEYLRELVERGFRFIIVSVSAYG 147 (218)
T ss_pred HHHHHHHHHhCCCeEEe-ehhcCCHHHHHHHHHHCCCEEEEEEEecCC
Confidence 34445667777777666 667777788999999999999998765543
No 482
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.91 E-value=89 Score=18.00 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=24.5
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..++++.+.+.|++++..... .........+ +|+++++..-
T Consensus 17 ~~~i~~~~~~~gi~~~~~~~~---~~~~~~~~~~--~D~il~~~~i 57 (90)
T PF02302_consen 17 ANKIKKALKELGIEVEVSAGS---ILEVEEIADD--ADLILLTPQI 57 (90)
T ss_dssp HHHHHHHHHHTTECEEEEEEE---TTTHHHHHTT---SEEEEEESS
T ss_pred HHHHHHHHHhccCceEEEEec---ccccccccCC--CcEEEEcCcc
Confidence 377888888888655543322 2233333444 9999998653
No 483
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=35.88 E-value=61 Score=23.74 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=33.6
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCch
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDE 47 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~ 47 (164)
..+.++|+++.+.+....++. ++.|+..|++++.+.-....+..
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~~-a~~ak~~ga~vIaiT~~~~spla 219 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVEA-AELAKERGAKVIAITDSADSPLA 219 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHHH-HHHHHHCCCcEEEEcCCCCCchh
Confidence 467899999999999976654 55688899998888866555443
No 484
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.87 E-value=1.5e+02 Score=20.75 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+.......+. ...+.+.....++|-||+...... ...+ .+...++||+.+-.
T Consensus 18 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--------~~~~-~l~~~~ipvV~~~~ 88 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--------EYIK-EIKELGIPFVLVDH 88 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--------HHHH-HHhhcCCCEEEEcc
Confidence 466667777777777666554333222 224455556678888888543211 1122 34556778887743
No 485
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=35.83 E-value=1.9e+02 Score=21.76 Aligned_cols=72 Identities=4% Similarity=-0.010 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEE-ecCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKI-YWGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~-~~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+-+.+.+++.|+.+.+.. ..++..+ .+++.....++|.|++.......+. ...+. +....+||+.+-
T Consensus 39 ~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~-----~~l~~-a~~~gIpVV~~d 112 (336)
T PRK15408 39 TSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLC-----PALKR-AMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHH-----HHHHH-HHHCCCeEEEeC
Confidence 4555667777778887776522 1234433 4566677788999999643322112 12232 455679999885
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 113 ~ 113 (336)
T PRK15408 113 S 113 (336)
T ss_pred C
Confidence 4
No 486
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=35.77 E-value=1.5e+02 Score=20.48 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+...|+.+.......++ ....++.+...++|.+|+......... -..+...+.||+.+-.
T Consensus 15 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~--------~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 15 AELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL--------LEELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--------HHHHHHcCCCEEEecc
Confidence 455566666666667666654333343 234455555668898888644332111 2235667788877743
No 487
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=35.38 E-value=1.1e+02 Score=19.01 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=24.9
Q ss_pred cCCceEEEEec--CChhHHHHHHHhhCCCCEEEEecc
Q 031195 94 KEANIVAKIYW--GDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 94 ~~~~~~~~~~~--g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.|+.++.. .. ..-...|.+..+..++|+||--..
T Consensus 44 ~Gi~v~~v-k~~~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 44 TGLTVNRM-KSGPLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred hCCcEEEE-ecCCCCchhHHHHHHHcCceeEEEEcCC
Confidence 57887765 43 122367999999999999988754
No 488
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=35.34 E-value=1.3e+02 Score=21.43 Aligned_cols=50 Identities=10% Similarity=0.193 Sum_probs=31.9
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
...+.+.+.+.+.|.|++|.+..-.... ...+. ..+++...||++.|...
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v-~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEK--TDTLI-EALRRYGLPIILFPSNP 65 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHH--HHHHH-HHHhccCCCEEEeCCCc
Confidence 4567778888899999999664222221 11122 34555669999988654
No 489
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=35.30 E-value=1.5e+02 Score=20.57 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhc-CCceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 82 DALDLLDTASRQK-EANIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 82 ~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
+....+.+.+.+. |.++....... .+.+.+...+ +|.|+++-
T Consensus 46 ~~~~~~~~a~~~l~G~~~~~~~~~~--~~~~~~~l~~--ad~I~l~G 88 (212)
T cd03146 46 EYTARFYAAFESLRGVEVSHLHLFD--TEDPLDALLE--ADVIYVGG 88 (212)
T ss_pred HHHHHHHHHHhhccCcEEEEEeccC--cccHHHHHhc--CCEEEECC
Confidence 4444556666666 66555332222 3344455555 88888876
No 490
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=35.04 E-value=1.9e+02 Score=21.65 Aligned_cols=39 Identities=10% Similarity=-0.074 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCC
Q 031195 20 ALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGS 58 (164)
Q Consensus 20 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~ 58 (164)
+.-.++.+.+.+++....|+++.+......+++...+.+
T Consensus 68 t~~~~~~l~r~~gg~~~~V~i~~P~~~~~~FDlvi~p~H 106 (311)
T PF06258_consen 68 TAPAALALRRASGGRTKTVQIMDPRLPPRPFDLVIVPEH 106 (311)
T ss_pred hHHHHHHHHHHcCCCceEEEEcCCCCCccccCEEEECcc
Confidence 344555566678888888888888765544555554443
No 491
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=35.02 E-value=2.2e+02 Score=22.21 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=15.0
Q ss_pred ChhHHHHHHHhhCCC--CEEEEeccC
Q 031195 106 DARERLLEAIEDLKL--DSLVMGSRG 129 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~--dlivlg~~~ 129 (164)
.....+++.+.+.+. +.+++|+.+
T Consensus 241 ~~~~~~~~~a~~~g~~~~~~~i~~~~ 266 (452)
T cd06362 241 DDIRGLLAAAKRLNAEGHFQWIASDG 266 (452)
T ss_pred HHHHHHHHHHHHcCCcCceEEEEecc
Confidence 445567777777666 566666543
No 492
>PRK03673 hypothetical protein; Provisional
Probab=35.01 E-value=2.2e+02 Score=22.28 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
..-..+...+...|+++......+|-.+.|.+..++ .++|+||+. .+.+.... .-+.+.+.+..++|+.
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~t-GGlGpt~d---D~t~~avA~a~g~~L~ 91 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVN-GGLGPTSD---DLSALAAATAAGEGLV 91 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEc-CCCCCCCc---ccHHHHHHHHcCCCce
Confidence 344556777888899988888778777777776444 358988874 23332221 1234445555555554
No 493
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=34.94 E-value=70 Score=21.23 Aligned_cols=56 Identities=16% Similarity=0.363 Sum_probs=39.3
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhc-----ccchhHHHhhcCCccEEEEeCCCCCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRII-----LGSVSNYVMTHAPCPVTIVKDPSFGK 163 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~-----~~s~~~~i~~~~~~pVliv~~~~~~~ 163 (164)
...-.+..++..+|..++|..+-....+++ -..+-+.++.++..-++++-..++++
T Consensus 81 G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~ 141 (161)
T PF00455_consen 81 GPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGR 141 (161)
T ss_pred CchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCC
Confidence 456677888999999999988755433332 23356778888888888877666543
No 494
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=34.88 E-value=1.8e+02 Score=21.14 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh-hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA-RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+....+.+.+++.|..+-.....++. .+..++...+.++|-+|+.+.... . +....+.+. +.||+++-..
T Consensus 17 ~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~------~~l~~~~~~-~iPvV~~~~~ 88 (279)
T PF00532_consen 17 AEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-D------EELRRLIKS-GIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-C------HHHHHHHHT-TSEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-h------HHHHHHHHc-CCCEEEEEec
Confidence 577788888888888876553333333 336667788889999999854332 1 123445555 8999998654
No 495
>PRK12289 GTPase RsgA; Reviewed
Probab=34.85 E-value=2.1e+02 Score=21.95 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=24.6
Q ss_pred HHhhhcCCceEE-EEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 89 TASRQKEANIVA-KIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 89 ~~~~~~~~~~~~-~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+.+...|..+-. -...|...+.|.+.... --.+++|.++-+
T Consensus 143 ~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~--ki~v~iG~SgVG 184 (352)
T PRK12289 143 DRLQQWGYQPLFISVETGIGLEALLEQLRN--KITVVAGPSGVG 184 (352)
T ss_pred HHHHhcCCeEEEEEcCCCCCHHHHhhhhcc--ceEEEEeCCCCC
Confidence 333444554322 23336667788888765 348899988765
No 496
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=34.80 E-value=94 Score=19.29 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=29.6
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
.+.+++++..|..+...++ +++.|+..++++..+.-.+..+
T Consensus 47 ~~dl~I~iS~SG~t~~~~~-~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 47 EKSVVILASHSGNTKETVA-AAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHcCCeEEEEECCCCCc
Confidence 4578999999988886444 5556788888887777554443
No 497
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=34.76 E-value=1.9e+02 Score=21.44 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C---C-----------hhHHHHHHHhhCCCCEEEEec---cCCcccchhcccchh
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G---D-----------ARERLLEAIEDLKLDSLVMGS---RGLGTVRRIILGSVS 142 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g---~-----------~~~~I~~~a~~~~~dlivlg~---~~~~~~~~~~~~s~~ 142 (164)
+.-.++.+.+...|+.++.++.. | + -.+...+++++.++|.|.+.- ||.......+--...
T Consensus 113 ~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L 192 (282)
T TIGR01858 113 KLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRL 192 (282)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHH
Confidence 34456677777888888877644 1 1 137788999999999998863 332222222333355
Q ss_pred HHHhhcCCccEEE
Q 031195 143 NYVMTHAPCPVTI 155 (164)
Q Consensus 143 ~~i~~~~~~pVli 155 (164)
+.|-...++|+.+
T Consensus 193 ~~I~~~~~iPLVl 205 (282)
T TIGR01858 193 AEIREVVDVPLVL 205 (282)
T ss_pred HHHHHHhCCCeEE
Confidence 6666677889644
No 498
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=34.75 E-value=1.3e+02 Score=19.68 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhcCC---ceEEEEecC--ChhHHHHHHHhhCCCCEEE-Eec--cCCcccchhcccchhHHHhh---cC
Q 031195 81 IDALDLLDTASRQKEA---NIVAKIYWG--DARERLLEAIEDLKLDSLV-MGS--RGLGTVRRIILGSVSNYVMT---HA 149 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~---~~~~~~~~g--~~~~~I~~~a~~~~~dliv-lg~--~~~~~~~~~~~~s~~~~i~~---~~ 149 (164)
...++.+.+.+...|+ .++...+-| +..-++-+.++..++|.+| +|. +|.+.-..+...+++..+++ +.
T Consensus 19 ~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~ 98 (144)
T PF00885_consen 19 DRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEY 98 (144)
T ss_dssp HHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccC
Confidence 5666777777777777 667666667 5567777778888899766 463 55555555555556665554 23
Q ss_pred CccEE
Q 031195 150 PCPVT 154 (164)
Q Consensus 150 ~~pVl 154 (164)
..||.
T Consensus 99 ~~PV~ 103 (144)
T PF00885_consen 99 GIPVI 103 (144)
T ss_dssp TSEEE
T ss_pred CccEE
Confidence 45654
No 499
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=34.70 E-value=1.7e+02 Score=20.74 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-CCh---------hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-GDA---------RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP 150 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~---------~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~ 150 (164)
.+.+.++.+.|++.++.+-.+..- +.. .....+.+.+.++|+|=..+... .....---....+++..++
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 455667777777777766554222 211 25566667889999998876622 1111111123456777888
Q ss_pred cc----EEEEe
Q 031195 151 CP----VTIVK 157 (164)
Q Consensus 151 ~p----Vliv~ 157 (164)
+| |.+.-
T Consensus 190 ~p~~~~Vk~sG 200 (236)
T PF01791_consen 190 VPGKVGVKASG 200 (236)
T ss_dssp STTTSEEEEES
T ss_pred CCcceEEEEeC
Confidence 89 87753
No 500
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=34.61 E-value=1.2e+02 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHhcCCCCC-eEEEEE
Q 031195 15 PSSKFALSWAVNNLLDKGD-TLYIIH 39 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~-~l~ll~ 39 (164)
..+...+++|+++|+..+. +|+++|
T Consensus 184 ~~~eRIar~AF~~A~~r~~k~Vt~v~ 209 (372)
T PLN00118 184 QASLRVAEYAFHYAKTHGRKRVSAIH 209 (372)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 3577889999999988654 588887
Done!