Query 031195
Match_columns 164
No_of_seqs 109 out of 1008
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 100.0 1.2E-29 4.3E-34 165.9 12.9 142 2-157 3-146 (146)
2 3tnj_A Universal stress protei 100.0 9.4E-30 3.2E-34 167.3 12.0 146 1-160 3-149 (150)
3 2dum_A Hypothetical protein PH 100.0 6.4E-29 2.2E-33 166.6 15.6 152 2-161 3-159 (170)
4 1mjh_A Protein (ATP-binding do 100.0 5E-29 1.7E-33 165.8 14.8 158 1-160 1-161 (162)
5 3fg9_A Protein of universal st 100.0 1.7E-28 5.6E-33 162.4 13.3 140 1-157 12-156 (156)
6 3hgm_A Universal stress protei 100.0 6.7E-29 2.3E-33 162.6 10.9 144 3-156 1-147 (147)
7 1tq8_A Hypothetical protein RV 100.0 5E-28 1.7E-32 161.4 14.2 144 2-161 15-161 (163)
8 3idf_A USP-like protein; unive 100.0 4.1E-28 1.4E-32 157.3 12.6 136 4-157 1-138 (138)
9 3dlo_A Universal stress protei 100.0 4.3E-28 1.5E-32 160.5 11.4 131 2-157 22-155 (155)
10 2z08_A Universal stress protei 100.0 1.3E-27 4.5E-32 154.9 11.2 136 3-157 1-137 (137)
11 2gm3_A Unknown protein; AT3G01 99.9 1.8E-26 6.2E-31 155.3 13.1 150 3-160 4-165 (175)
12 3fdx_A Putative filament prote 99.9 7.3E-27 2.5E-31 152.2 10.3 138 4-157 1-143 (143)
13 3olq_A Universal stress protei 99.9 1.3E-26 4.4E-31 169.3 12.6 149 1-161 4-153 (319)
14 1jmv_A USPA, universal stress 99.9 7.9E-26 2.7E-30 147.0 13.5 139 3-160 1-140 (141)
15 3loq_A Universal stress protei 99.9 3.7E-26 1.3E-30 165.3 10.3 144 1-160 19-164 (294)
16 3mt0_A Uncharacterized protein 99.9 6.9E-25 2.4E-29 158.4 12.5 125 1-159 4-129 (290)
17 3cis_A Uncharacterized protein 99.9 5.8E-24 2E-28 154.9 13.0 142 2-160 17-163 (309)
18 1q77_A Hypothetical protein AQ 99.9 9.4E-24 3.2E-28 136.7 12.3 132 3-157 3-138 (138)
19 3mt0_A Uncharacterized protein 99.9 1E-23 3.5E-28 152.3 12.8 138 3-160 133-278 (290)
20 3ab8_A Putative uncharacterize 99.9 3.5E-24 1.2E-28 153.0 10.0 149 5-160 1-151 (268)
21 3olq_A Universal stress protei 99.9 4.1E-23 1.4E-27 150.8 12.7 145 3-162 155-309 (319)
22 3loq_A Universal stress protei 99.9 6.4E-23 2.2E-27 148.3 13.4 125 3-161 169-293 (294)
23 3cis_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 144.5 13.9 136 3-159 170-307 (309)
24 3ab8_A Putative uncharacterize 99.8 1.4E-20 4.7E-25 134.3 10.2 116 3-157 153-268 (268)
25 2iel_A Hypothetical protein TT 97.4 0.0092 3.2E-07 37.5 11.6 129 4-156 1-133 (138)
26 1wy5_A TILS, hypothetical UPF0 96.3 0.055 1.9E-06 39.2 10.4 94 4-129 24-135 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 96.2 0.038 1.3E-06 42.3 9.5 95 4-129 18-129 (464)
28 3g40_A Na-K-CL cotransporter; 95.2 0.025 8.7E-07 40.2 4.6 100 20-161 181-280 (294)
29 2xry_A Deoxyribodipyrimidine p 95.0 0.23 8E-06 38.1 9.8 112 16-158 50-161 (482)
30 3kcq_A Phosphoribosylglycinami 94.5 0.3 1E-05 33.3 8.3 88 1-129 5-92 (215)
31 4b4k_A N5-carboxyaminoimidazol 94.5 0.62 2.1E-05 30.7 9.5 72 81-160 35-110 (181)
32 1zun_A Sulfate adenylyltransfe 94.4 0.21 7.3E-06 36.3 7.9 93 4-130 46-157 (325)
33 1efp_B ETF, protein (electron 94.2 0.071 2.4E-06 37.4 4.7 30 13-43 35-66 (252)
34 1o97_C Electron transferring f 93.8 0.074 2.5E-06 37.5 4.2 30 13-42 35-66 (264)
35 3qjg_A Epidermin biosynthesis 93.8 0.42 1.4E-05 31.5 7.6 110 4-157 5-117 (175)
36 3umv_A Deoxyribodipyrimidine p 93.6 0.63 2.1E-05 36.0 9.4 116 16-158 51-168 (506)
37 1efv_B Electron transfer flavo 93.6 0.064 2.2E-06 37.7 3.7 28 15-43 40-69 (255)
38 2wq7_A RE11660P; lyase-DNA com 93.6 0.74 2.5E-05 35.9 9.8 129 6-159 30-162 (543)
39 3p9x_A Phosphoribosylglycinami 93.5 1.2 4E-05 30.3 9.7 85 4-129 2-91 (211)
40 3ih5_A Electron transfer flavo 93.3 0.38 1.3E-05 32.9 7.1 41 3-43 2-47 (217)
41 1xmp_A PURE, phosphoribosylami 93.2 1.1 3.8E-05 29.2 9.1 72 81-160 24-99 (170)
42 2nz2_A Argininosuccinate synth 93.0 0.56 1.9E-05 35.3 8.1 39 1-43 2-40 (413)
43 1k92_A Argininosuccinate synth 92.9 0.96 3.3E-05 34.5 9.3 38 2-43 8-45 (455)
44 2ywx_A Phosphoribosylaminoimid 92.9 1.2 4E-05 28.7 9.2 70 81-158 12-82 (157)
45 4grd_A N5-CAIR mutase, phospho 92.7 1.3 4.6E-05 28.9 8.9 72 81-160 25-100 (173)
46 3trh_A Phosphoribosylaminoimid 92.5 1.5 5E-05 28.7 9.0 72 81-160 19-94 (169)
47 3kuu_A Phosphoribosylaminoimid 92.3 1.6 5.4E-05 28.6 9.1 72 81-160 25-100 (174)
48 1u11_A PURE (N5-carboxyaminoim 92.0 1.7 5.9E-05 28.6 8.8 72 81-160 34-109 (182)
49 1np7_A DNA photolyase; protein 91.7 2.4 8.3E-05 32.5 10.4 132 4-159 5-138 (489)
50 1ni5_A Putative cell cycle pro 91.7 1.2 4.1E-05 33.6 8.6 92 4-129 13-118 (433)
51 3k32_A Uncharacterized protein 91.6 0.97 3.3E-05 30.3 7.3 39 1-43 3-41 (203)
52 3zqu_A Probable aromatic acid 91.5 0.38 1.3E-05 32.6 5.2 38 1-39 1-38 (209)
53 1o4v_A Phosphoribosylaminoimid 91.3 2.1 7.3E-05 28.2 8.7 72 81-160 26-101 (183)
54 3oow_A Phosphoribosylaminoimid 91.2 2.1 7.1E-05 27.9 9.6 72 81-160 18-93 (166)
55 3lp6_A Phosphoribosylaminoimid 91.1 1.3 4.4E-05 29.1 7.1 72 81-160 20-95 (174)
56 3ors_A N5-carboxyaminoimidazol 91.1 2.1 7.2E-05 27.7 8.8 72 81-160 16-91 (163)
57 1sur_A PAPS reductase; assimil 91.0 2.5 8.6E-05 28.4 10.0 88 5-130 45-158 (215)
58 3rg8_A Phosphoribosylaminoimid 90.5 2.4 8.2E-05 27.4 8.4 72 81-160 15-91 (159)
59 1iv0_A Hypothetical protein; r 90.5 0.84 2.9E-05 26.9 5.4 54 106-160 38-95 (98)
60 4ds3_A Phosphoribosylglycinami 90.4 2.1 7.1E-05 29.0 8.0 85 4-129 7-96 (209)
61 1owl_A Photolyase, deoxyribodi 90.3 2 6.8E-05 33.0 8.7 118 12-158 12-129 (484)
62 3bl5_A Queuosine biosynthesis 89.9 3.1 0.00011 27.8 10.3 37 3-43 2-38 (219)
63 2oq2_A Phosphoadenosine phosph 89.3 4.1 0.00014 28.4 9.4 40 4-44 41-80 (261)
64 3tvs_A Cryptochrome-1; circadi 89.3 0.73 2.5E-05 35.9 5.6 120 12-157 13-135 (538)
65 2hma_A Probable tRNA (5-methyl 89.2 3.9 0.00013 30.3 9.3 96 4-129 9-133 (376)
66 3da8_A Probable 5'-phosphoribo 89.1 3.9 0.00013 27.8 8.9 84 3-129 11-99 (215)
67 3tqr_A Phosphoribosylglycinami 88.6 4.3 0.00015 27.6 9.4 87 1-129 1-93 (215)
68 3o1l_A Formyltetrahydrofolate 88.5 5.3 0.00018 28.7 10.2 84 3-129 104-191 (302)
69 3fy4_A 6-4 photolyase; DNA rep 88.0 1.7 6E-05 33.8 6.9 110 1-128 1-112 (537)
70 3g40_A Na-K-CL cotransporter; 87.9 5.8 0.0002 28.3 12.2 121 6-160 22-148 (294)
71 2wsi_A FAD synthetase; transfe 87.9 2.8 9.5E-05 30.1 7.6 93 5-131 54-169 (306)
72 2l69_A Rossmann 2X3 fold prote 87.3 2.9 0.0001 24.3 6.2 37 81-117 87-123 (134)
73 2l69_A Rossmann 2X3 fold prote 86.8 0.99 3.4E-05 26.3 3.8 69 81-156 12-81 (134)
74 3lou_A Formyltetrahydrofolate 86.6 7 0.00024 27.9 9.5 83 4-129 95-181 (292)
75 3nbm_A PTS system, lactose-spe 86.2 1.2 4E-05 26.8 4.1 66 82-159 21-87 (108)
76 2ywb_A GMP synthase [glutamine 85.1 7.7 0.00026 29.9 9.2 35 5-43 210-244 (503)
77 3n0v_A Formyltetrahydrofolate 85.0 8.4 0.00029 27.4 9.8 83 4-129 90-176 (286)
78 2j07_A Deoxyribodipyrimidine p 84.8 7.2 0.00025 29.3 8.7 112 12-159 11-122 (420)
79 2der_A TRNA-specific 2-thiouri 84.5 10 0.00036 28.0 9.8 96 4-129 17-142 (380)
80 1g63_A Epidermin modifying enz 84.5 1.4 4.8E-05 29.1 4.2 36 3-39 1-36 (181)
81 3ecs_A Translation initiation 84.4 8.1 0.00028 27.9 8.5 64 88-158 165-231 (315)
82 1kor_A Argininosuccinate synth 83.9 4 0.00014 30.5 6.9 36 5-43 1-36 (400)
83 3tqi_A GMP synthase [glutamine 83.9 3.1 0.00011 32.3 6.5 36 5-43 231-266 (527)
84 2c5s_A THII, probable thiamine 83.8 11 0.00038 28.2 9.3 35 4-42 187-221 (413)
85 1u3d_A Cryptochrome 1 apoprote 83.7 11 0.00038 29.0 9.5 118 12-159 21-139 (509)
86 3en0_A Cyanophycinase; serine 83.3 3.5 0.00012 29.5 6.1 105 5-146 26-137 (291)
87 1ccw_A Protein (glutamate muta 83.0 5.6 0.00019 24.7 6.5 70 85-157 21-92 (137)
88 2ywr_A Phosphoribosylglycinami 83.0 8.7 0.0003 26.0 11.2 62 88-158 44-110 (216)
89 1nu0_A Hypothetical protein YQ 82.8 1.3 4.4E-05 27.9 3.3 53 107-159 41-97 (138)
90 3auf_A Glycinamide ribonucleot 82.6 9.4 0.00032 26.1 9.6 42 88-129 65-111 (229)
91 2qv7_A Diacylglycerol kinase D 82.6 5.9 0.0002 28.6 7.3 72 81-158 41-114 (337)
92 3rjz_A N-type ATP pyrophosphat 82.6 9.8 0.00033 26.3 8.4 96 1-128 1-99 (237)
93 3hly_A Flavodoxin-like domain; 82.4 5.9 0.0002 25.2 6.6 73 81-157 15-89 (161)
94 1vl2_A Argininosuccinate synth 82.1 6.5 0.00022 29.6 7.4 36 4-43 14-49 (421)
95 2ejb_A Probable aromatic acid 81.8 2.6 8.9E-05 28.0 4.7 34 5-39 2-35 (189)
96 2e0i_A 432AA long hypothetical 81.6 5.4 0.00018 30.2 7.0 118 12-159 10-127 (440)
97 1meo_A Phosophoribosylglycinam 81.5 9.9 0.00034 25.6 11.5 84 5-129 1-89 (209)
98 2yxb_A Coenzyme B12-dependent 81.1 5.5 0.00019 25.6 6.0 70 85-157 36-107 (161)
99 1vhx_A Putative holliday junct 80.9 1.3 4.3E-05 28.4 2.8 56 105-160 41-100 (150)
100 2j4d_A Cryptochrome 3, cryptoc 80.9 8.8 0.0003 29.8 8.0 131 6-159 41-175 (525)
101 3fni_A Putative diflavin flavo 80.8 5.4 0.00019 25.4 5.9 50 81-132 19-69 (159)
102 3obi_A Formyltetrahydrofolate 80.5 8 0.00027 27.5 7.2 85 3-129 88-176 (288)
103 1dnp_A DNA photolyase; DNA rep 79.9 2.4 8.3E-05 32.4 4.6 89 16-128 14-104 (471)
104 3s40_A Diacylglycerol kinase; 79.7 9.3 0.00032 27.2 7.4 71 81-158 25-97 (304)
105 2pg3_A Queuosine biosynthesis 79.3 12 0.00041 25.3 10.8 36 4-43 2-37 (232)
106 2o8v_A Phosphoadenosine phosph 78.9 13 0.00046 25.6 9.5 35 5-43 46-80 (252)
107 2l2q_A PTS system, cellobiose- 78.9 7.8 0.00027 23.0 5.8 64 83-158 20-84 (109)
108 3av3_A Phosphoribosylglycinami 78.6 13 0.00043 25.1 9.2 43 87-129 45-92 (212)
109 2dpl_A GMP synthetase, GMP syn 78.6 12 0.0004 26.8 7.6 36 5-43 21-56 (308)
110 2q5c_A NTRC family transcripti 78.3 12 0.00042 24.8 8.5 65 82-160 15-80 (196)
111 2pju_A Propionate catabolism o 78.0 14 0.00047 25.2 8.7 68 81-160 22-92 (225)
112 1jkx_A GART;, phosphoribosylgl 77.7 14 0.00047 25.0 9.8 42 88-129 43-89 (212)
113 1p3y_1 MRSD protein; flavoprot 77.6 2.5 8.5E-05 28.3 3.6 36 3-39 7-42 (194)
114 1xky_A Dihydrodipicolinate syn 77.3 16 0.00054 26.1 8.0 78 81-159 68-147 (301)
115 3nrb_A Formyltetrahydrofolate 77.3 11 0.00038 26.8 7.1 34 4-38 88-121 (287)
116 3dm5_A SRP54, signal recogniti 77.2 22 0.00074 27.0 10.4 48 85-132 145-195 (443)
117 3l4e_A Uncharacterized peptida 77.0 8.6 0.00029 25.8 6.2 44 82-127 44-87 (206)
118 1rtt_A Conserved hypothetical 77.0 9.1 0.00031 25.0 6.3 37 5-42 7-46 (193)
119 3ezx_A MMCP 1, monomethylamine 76.9 7.6 0.00026 26.3 5.9 69 85-156 110-183 (215)
120 3d0c_A Dihydrodipicolinate syn 76.7 14 0.0005 26.5 7.7 75 81-157 68-144 (314)
121 2ehh_A DHDPS, dihydrodipicolin 76.7 15 0.0005 26.1 7.6 76 81-159 56-135 (294)
122 2ojp_A DHDPS, dihydrodipicolin 76.5 14 0.00047 26.2 7.5 78 81-159 57-136 (292)
123 1y80_A Predicted cobalamin bin 76.3 8.2 0.00028 25.8 6.0 70 85-157 106-178 (210)
124 1vbk_A Hypothetical protein PH 75.8 11 0.00038 27.0 6.8 33 4-41 179-211 (307)
125 2vc6_A MOSA, dihydrodipicolina 75.3 17 0.00057 25.8 7.6 78 81-159 56-135 (292)
126 2gkg_A Response regulator homo 75.3 9.7 0.00033 22.1 6.4 68 82-156 16-86 (127)
127 1t9k_A Probable methylthioribo 75.0 21 0.00071 26.2 8.1 66 88-158 201-269 (347)
128 2i2x_B MTAC, methyltransferase 74.2 13 0.00043 25.9 6.6 70 85-157 141-211 (258)
129 2h31_A Multifunctional protein 74.2 23 0.0008 26.7 8.3 71 81-159 278-353 (425)
130 1o5k_A DHDPS, dihydrodipicolin 74.1 16 0.00056 26.0 7.4 78 81-159 68-147 (306)
131 2v9d_A YAGE; dihydrodipicolini 73.9 16 0.00056 26.6 7.4 78 81-159 87-166 (343)
132 1jq5_A Glycerol dehydrogenase; 73.6 10 0.00035 27.8 6.3 70 83-160 46-120 (370)
133 3eb2_A Putative dihydrodipicol 73.5 22 0.00075 25.3 8.4 80 81-161 60-141 (300)
134 3cpr_A Dihydrodipicolinate syn 73.4 21 0.00071 25.5 7.8 76 81-159 72-151 (304)
135 2xxa_A Signal recognition part 73.3 27 0.00093 26.3 9.4 31 13-43 110-140 (433)
136 3u7q_B Nitrogenase molybdenum- 73.2 30 0.001 26.8 10.0 51 101-157 420-470 (523)
137 2r8w_A AGR_C_1641P; APC7498, d 73.1 17 0.00058 26.3 7.3 78 81-159 90-169 (332)
138 2yxg_A DHDPS, dihydrodipicolin 72.9 16 0.00053 25.9 7.0 76 81-159 56-135 (289)
139 3m5v_A DHDPS, dihydrodipicolin 72.8 21 0.00073 25.3 7.7 77 81-159 63-143 (301)
140 2bon_A Lipid kinase; DAG kinas 72.3 15 0.00053 26.4 7.0 69 84-158 46-118 (332)
141 1xrs_A D-lysine 5,6-aminomutas 72.1 10 0.00035 28.8 5.8 47 95-141 150-199 (516)
142 2rfg_A Dihydrodipicolinate syn 72.1 15 0.00052 26.1 6.8 78 81-159 56-135 (297)
143 3hv2_A Response regulator/HD d 71.7 15 0.0005 22.5 6.8 71 81-159 24-95 (153)
144 3a5f_A Dihydrodipicolinate syn 70.9 16 0.00054 25.9 6.6 78 81-159 57-136 (291)
145 2a0u_A Initiation factor 2B; S 69.8 32 0.0011 25.6 8.4 66 88-158 230-298 (383)
146 1f6k_A N-acetylneuraminate lya 69.2 16 0.00054 25.9 6.3 76 81-159 60-139 (293)
147 2o2z_A Hypothetical protein; s 68.6 8.7 0.0003 27.9 4.8 51 106-159 167-219 (323)
148 1sbz_A Probable aromatic acid 68.1 12 0.00041 25.0 5.2 34 6-39 2-35 (197)
149 2p0y_A Hypothetical protein LP 68.1 6.8 0.00023 28.6 4.2 50 106-158 177-228 (341)
150 3m47_A Orotidine 5'-phosphate 68.1 15 0.00053 25.0 5.9 37 1-42 9-45 (228)
151 2yvk_A Methylthioribose-1-phos 67.8 23 0.00077 26.3 7.0 66 88-158 226-294 (374)
152 3kl4_A SRP54, signal recogniti 67.8 37 0.0013 25.6 9.4 48 85-132 142-192 (433)
153 2wkj_A N-acetylneuraminate lya 67.5 17 0.00059 25.9 6.2 76 81-159 67-147 (303)
154 3f6p_A Transcriptional regulat 67.1 16 0.00055 21.2 7.8 69 82-158 13-81 (120)
155 3m9w_A D-xylose-binding peripl 66.9 29 0.001 24.1 9.1 73 81-159 18-92 (313)
156 1t5o_A EIF2BD, translation ini 66.9 30 0.001 25.4 7.4 66 88-158 199-266 (351)
157 2amj_A Modulator of drug activ 66.5 24 0.00084 23.3 6.5 49 81-131 33-82 (204)
158 3mcu_A Dipicolinate synthase, 66.5 6.2 0.00021 26.6 3.5 37 2-39 3-40 (207)
159 3qze_A DHDPS, dihydrodipicolin 66.3 33 0.0011 24.6 7.6 78 81-159 79-158 (314)
160 3na8_A Putative dihydrodipicol 65.8 31 0.0011 24.8 7.3 78 81-159 80-159 (315)
161 2ppv_A Uncharacterized protein 65.0 12 0.00042 27.2 5.0 51 106-159 166-218 (332)
162 2hy5_B Intracellular sulfur ox 64.8 5.8 0.0002 24.8 2.9 40 3-43 4-47 (136)
163 3si9_A DHDPS, dihydrodipicolin 64.7 36 0.0012 24.4 7.6 78 81-159 78-157 (315)
164 2r91_A 2-keto-3-deoxy-(6-phosp 64.4 28 0.00097 24.5 6.8 49 111-159 82-131 (286)
165 1wpw_A 3-isopropylmalate dehyd 64.2 30 0.001 25.2 6.9 76 15-126 144-219 (336)
166 3h5i_A Response regulator/sens 64.1 21 0.0007 21.4 8.2 72 82-159 16-87 (140)
167 3tak_A DHDPS, dihydrodipicolin 63.7 34 0.0012 24.2 7.1 78 81-159 57-136 (291)
168 2q7x_A UPF0052 protein SP_1565 63.6 8 0.00027 28.1 3.8 50 106-158 173-224 (326)
169 2zki_A 199AA long hypothetical 63.5 8.2 0.00028 25.2 3.7 43 1-43 1-43 (199)
170 1qkk_A DCTD, C4-dicarboxylate 63.4 23 0.00077 21.6 6.0 69 82-158 14-83 (155)
171 3l49_A ABC sugar (ribose) tran 63.1 33 0.0011 23.4 7.1 72 81-158 21-94 (291)
172 3b4u_A Dihydrodipicolinate syn 62.9 25 0.00086 24.9 6.3 77 82-159 60-142 (294)
173 3l6u_A ABC-type sugar transpor 62.6 34 0.0012 23.4 8.9 73 81-159 24-98 (293)
174 3flu_A DHDPS, dihydrodipicolin 62.5 39 0.0013 24.0 7.7 78 81-159 63-142 (297)
175 2ohh_A Type A flavoprotein FPR 62.4 43 0.0015 24.4 10.7 49 81-131 271-319 (404)
176 3iwt_A 178AA long hypothetical 62.4 25 0.00086 22.7 5.9 42 85-126 43-88 (178)
177 3a11_A Translation initiation 62.3 20 0.00067 26.2 5.7 65 87-158 184-251 (338)
178 1w3i_A EDA, 2-keto-3-deoxy glu 62.2 26 0.00088 24.8 6.3 54 106-159 76-132 (293)
179 1qzu_A Hypothetical protein MD 61.8 10 0.00035 25.5 3.9 36 4-39 19-54 (206)
180 3to5_A CHEY homolog; alpha(5)b 61.6 25 0.00086 21.6 6.0 72 81-159 22-96 (134)
181 2q9u_A A-type flavoprotein; fl 61.1 46 0.0016 24.4 8.1 49 82-132 272-320 (414)
182 2nuw_A 2-keto-3-deoxygluconate 61.0 26 0.00089 24.7 6.1 54 106-159 76-132 (288)
183 3egc_A Putative ribose operon 61.0 37 0.0013 23.2 8.9 71 81-159 24-96 (291)
184 4dad_A Putative pilus assembly 60.9 24 0.00082 21.2 5.4 72 81-159 30-104 (146)
185 1vb5_A Translation initiation 60.9 40 0.0014 23.7 8.4 62 91-159 156-220 (276)
186 3k9c_A Transcriptional regulat 60.2 38 0.0013 23.2 9.4 69 81-158 27-96 (289)
187 3grc_A Sensor protein, kinase; 60.1 24 0.00083 20.9 6.3 69 82-158 17-88 (140)
188 1qv9_A F420-dependent methylen 59.8 8.9 0.0003 26.6 3.3 43 114-160 59-101 (283)
189 3hs3_A Ribose operon repressor 59.2 39 0.0013 23.0 7.4 66 81-159 26-94 (277)
190 2q62_A ARSH; alpha/beta, flavo 58.8 25 0.00086 24.2 5.6 49 81-131 51-110 (247)
191 2qxy_A Response regulator; reg 58.7 26 0.00089 20.8 7.5 69 82-159 15-84 (142)
192 3eod_A Protein HNR; response r 58.6 25 0.00085 20.5 7.3 70 82-159 18-88 (130)
193 1efv_A Electron transfer flavo 58.5 34 0.0012 24.6 6.4 33 7-43 4-41 (315)
194 2rjn_A Response regulator rece 58.1 29 0.00098 21.1 7.0 69 82-158 18-87 (154)
195 3dzc_A UDP-N-acetylglucosamine 57.9 53 0.0018 24.1 7.9 43 81-125 97-141 (396)
196 3lua_A Response regulator rece 57.9 27 0.00093 20.7 5.4 71 82-159 15-90 (140)
197 3l21_A DHDPS, dihydrodipicolin 57.7 48 0.0017 23.6 7.8 78 81-159 71-150 (304)
198 3gxq_A Putative regulator of t 57.6 9.3 0.00032 18.6 2.3 26 97-122 11-37 (54)
199 3jy6_A Transcriptional regulat 57.4 42 0.0014 22.8 8.9 70 81-159 23-94 (276)
200 3daq_A DHDPS, dihydrodipicolin 57.4 36 0.0012 24.1 6.3 78 81-159 58-137 (292)
201 3o1i_D Periplasmic protein TOR 56.8 45 0.0015 22.9 7.9 69 81-156 21-93 (304)
202 3i42_A Response regulator rece 56.7 27 0.00091 20.3 7.7 71 82-160 14-87 (127)
203 4e0q_A COP9 signalosome comple 56.6 22 0.00074 22.3 4.6 52 107-158 71-122 (141)
204 3pm6_A Putative fructose-bisph 56.4 20 0.00068 25.8 4.8 67 90-156 21-88 (306)
205 3cg4_A Response regulator rece 56.1 29 0.001 20.6 7.3 70 82-159 18-90 (142)
206 3rpe_A MDAB, modulator of drug 55.6 45 0.0015 22.5 6.7 49 81-131 46-95 (218)
207 3lqk_A Dipicolinate synthase s 55.5 13 0.00046 24.8 3.6 36 3-39 6-42 (201)
208 2b4a_A BH3024; flavodoxin-like 55.4 30 0.001 20.5 5.9 68 82-157 26-95 (138)
209 3gv0_A Transcriptional regulat 55.1 48 0.0016 22.7 7.4 71 81-159 26-98 (288)
210 1e2b_A Enzyme IIB-cellobiose; 54.9 30 0.001 20.3 5.6 43 82-130 18-61 (106)
211 2lpm_A Two-component response 54.4 25 0.00085 21.3 4.5 62 87-158 24-87 (123)
212 2vzf_A NADH-dependent FMN redu 54.3 42 0.0014 21.8 6.0 49 81-131 19-81 (197)
213 3rot_A ABC sugar transporter, 54.2 50 0.0017 22.7 8.2 73 81-159 19-95 (297)
214 3exr_A RMPD (hexulose-6-phosph 53.9 23 0.00078 23.9 4.7 34 4-42 5-38 (221)
215 2qr3_A Two-component system re 53.6 32 0.0011 20.3 6.8 69 82-157 14-87 (140)
216 2d1p_B TUSC, hypothetical UPF0 53.4 9.6 0.00033 23.0 2.5 39 4-43 1-43 (119)
217 3gt7_A Sensor protein; structu 53.3 36 0.0012 20.7 7.8 71 81-159 17-90 (154)
218 3vmk_A 3-isopropylmalate dehyd 53.3 41 0.0014 25.0 6.1 24 16-39 180-203 (375)
219 4f2d_A L-arabinose isomerase; 53.2 72 0.0024 24.6 7.7 78 77-160 25-107 (500)
220 3dff_A Teicoplanin pseudoaglyc 53.1 55 0.0019 22.8 8.9 50 108-157 137-186 (273)
221 3w01_A Heptaprenylglyceryl pho 52.9 41 0.0014 23.1 5.8 49 109-160 26-74 (235)
222 3u1h_A 3-isopropylmalate dehyd 52.7 53 0.0018 24.5 6.6 24 16-39 187-210 (390)
223 1x0l_A Homoisocitrate dehydrog 52.5 64 0.0022 23.5 7.0 26 15-40 144-170 (333)
224 2ffh_A Protein (FFH); SRP54, s 52.4 72 0.0025 24.0 11.1 28 12-40 107-134 (425)
225 1o2d_A Alcohol dehydrogenase, 52.1 61 0.0021 23.7 7.1 45 83-127 57-107 (371)
226 3snk_A Response regulator CHEY 51.9 33 0.0011 20.2 4.9 70 82-159 25-96 (135)
227 2zay_A Response regulator rece 51.8 36 0.0012 20.3 5.6 49 107-159 40-91 (147)
228 3uug_A Multiple sugar-binding 51.6 58 0.002 22.7 8.0 73 81-159 19-93 (330)
229 1mvl_A PPC decarboxylase athal 51.6 22 0.00076 23.9 4.2 34 4-39 19-52 (209)
230 3k4h_A Putative transcriptiona 51.6 54 0.0019 22.3 6.8 71 81-159 29-101 (292)
231 3bul_A Methionine synthase; tr 51.5 33 0.0011 27.1 5.7 70 85-157 116-186 (579)
232 3e96_A Dihydrodipicolinate syn 51.4 56 0.0019 23.4 6.6 75 81-157 68-144 (316)
233 1e5d_A Rubredoxin\:oxygen oxid 51.3 68 0.0023 23.3 11.6 48 82-131 268-315 (402)
234 2a5l_A Trp repressor binding p 51.2 15 0.00053 23.8 3.4 39 4-42 5-44 (200)
235 1y5e_A Molybdenum cofactor bio 51.0 44 0.0015 21.4 5.5 42 85-126 34-79 (169)
236 3elf_A Fructose-bisphosphate a 50.7 36 0.0012 24.9 5.5 76 85-160 10-97 (349)
237 3hzh_A Chemotaxis response reg 50.5 41 0.0014 20.5 6.6 72 81-159 46-120 (157)
238 2is8_A Molybdopterin biosynthe 50.3 33 0.0011 21.9 4.8 41 86-126 25-69 (164)
239 2qjg_A Putative aldolase MJ040 50.3 57 0.0019 22.5 6.4 68 83-158 133-210 (273)
240 3qk7_A Transcriptional regulat 50.2 59 0.002 22.3 8.8 70 81-158 26-96 (294)
241 3vzx_A Heptaprenylglyceryl pho 49.5 33 0.0011 23.5 4.9 48 110-160 22-69 (228)
242 3dbi_A Sugar-binding transcrip 49.5 65 0.0022 22.6 10.1 71 81-158 79-151 (338)
243 1w2w_B 5-methylthioribose-1-ph 49.5 10 0.00035 25.2 2.3 65 89-158 24-93 (191)
244 3g1w_A Sugar ABC transporter; 49.1 61 0.0021 22.2 7.6 73 81-159 20-95 (305)
245 1vlc_A 3-isopropylmalate dehyd 49.1 58 0.002 24.1 6.3 76 15-126 174-250 (366)
246 1w0d_A 3-isopropylmalate dehyd 49.1 41 0.0014 24.5 5.5 24 16-39 155-178 (337)
247 1xrs_B D-lysine 5,6-aminomutas 49.1 44 0.0015 23.4 5.5 26 106-131 167-192 (262)
248 1ydg_A Trp repressor binding p 49.0 21 0.00072 23.5 3.8 49 81-131 21-90 (211)
249 3t8y_A CHEB, chemotaxis respon 48.2 46 0.0016 20.5 7.0 71 82-158 36-106 (164)
250 1srr_A SPO0F, sporulation resp 47.9 38 0.0013 19.5 6.7 69 82-158 14-83 (124)
251 1gpm_A GMP synthetase, XMP ami 47.8 94 0.0032 24.0 8.2 36 5-43 228-263 (525)
252 3tfx_A Orotidine 5'-phosphate 47.8 68 0.0023 22.4 6.4 25 1-26 1-25 (259)
253 3rqi_A Response regulator prot 47.8 51 0.0017 20.8 6.1 70 82-159 18-88 (184)
254 3c3d_A 2-phospho-L-lactate tra 47.7 35 0.0012 24.6 4.9 48 106-158 172-221 (311)
255 3ksm_A ABC-type sugar transpor 47.7 61 0.0021 21.7 6.9 72 81-158 16-92 (276)
256 3ce9_A Glycerol dehydrogenase; 47.6 47 0.0016 24.0 5.8 69 83-160 49-122 (354)
257 1ta9_A Glycerol dehydrogenase; 47.6 65 0.0022 24.4 6.7 69 83-160 106-179 (450)
258 3n53_A Response regulator rece 47.5 42 0.0014 19.8 7.0 69 82-159 14-85 (140)
259 3cnb_A DNA-binding response re 47.5 41 0.0014 19.8 7.9 70 82-159 19-93 (143)
260 3kht_A Response regulator; PSI 47.4 43 0.0015 19.9 7.7 72 82-159 16-90 (144)
261 2qzj_A Two-component response 47.2 42 0.0015 19.8 7.5 69 82-158 15-83 (136)
262 2f6u_A GGGPS, (S)-3-O-geranylg 47.1 31 0.0011 23.7 4.4 49 108-159 22-70 (234)
263 3flk_A Tartrate dehydrogenase/ 46.7 65 0.0022 23.8 6.3 26 15-40 166-192 (364)
264 3o3m_A Alpha subunit 2-hydroxy 46.7 20 0.00067 26.8 3.7 56 106-161 321-376 (408)
265 2fzv_A Putative arsenical resi 46.6 44 0.0015 23.6 5.3 49 81-131 75-135 (279)
266 3udu_A 3-isopropylmalate dehyd 46.2 53 0.0018 24.2 5.7 24 16-39 168-191 (361)
267 2y3z_A 3-isopropylmalate dehyd 46.1 68 0.0023 23.6 6.3 24 16-39 164-187 (359)
268 1zgz_A Torcad operon transcrip 46.1 40 0.0014 19.2 7.9 69 82-158 13-81 (122)
269 3q9s_A DNA-binding response re 45.9 66 0.0023 21.6 7.4 70 82-159 48-117 (249)
270 3q94_A Fructose-bisphosphate a 45.9 39 0.0013 24.0 4.9 67 90-156 15-86 (288)
271 1xhf_A DYE resistance, aerobic 45.7 41 0.0014 19.2 7.5 69 82-158 14-82 (123)
272 8abp_A L-arabinose-binding pro 45.7 70 0.0024 21.9 7.3 70 81-157 18-89 (306)
273 3f6c_A Positive transcription 45.6 44 0.0015 19.5 6.3 71 82-159 12-83 (134)
274 3r8w_A 3-isopropylmalate dehyd 45.2 70 0.0024 24.0 6.3 24 16-39 208-231 (405)
275 3e61_A Putative transcriptiona 45.1 68 0.0023 21.6 7.7 69 81-159 24-95 (277)
276 3q0i_A Methionyl-tRNA formyltr 45.0 84 0.0029 22.6 7.9 41 87-129 55-95 (318)
277 3jte_A Response regulator rece 45.0 47 0.0016 19.7 6.8 70 82-159 14-86 (143)
278 2x0k_A Riboflavin biosynthesis 44.5 86 0.003 22.8 6.7 38 6-43 16-57 (338)
279 3rfq_A Pterin-4-alpha-carbinol 44.3 59 0.002 21.3 5.3 42 85-126 52-96 (185)
280 3kto_A Response regulator rece 44.2 45 0.0015 19.6 4.6 71 82-159 17-89 (136)
281 1tjy_A Sugar transport protein 44.1 79 0.0027 22.0 7.5 72 81-158 19-93 (316)
282 2a9o_A Response regulator; ess 44.0 43 0.0015 18.9 7.0 69 83-159 13-81 (120)
283 1gvf_A Tagatose-bisphosphate a 44.0 19 0.00065 25.6 3.1 52 106-157 29-81 (286)
284 1x92_A APC5045, phosphoheptose 43.8 30 0.001 22.5 3.9 38 3-41 112-149 (199)
285 3rjz_A N-type ATP pyrophosphat 43.7 60 0.002 22.3 5.5 49 82-131 103-151 (237)
286 2j48_A Two-component sensor ki 43.6 42 0.0014 18.7 7.3 70 82-159 12-84 (119)
287 2rgy_A Transcriptional regulat 43.3 76 0.0026 21.6 7.1 70 81-158 24-98 (290)
288 1mkz_A Molybdenum cofactor bio 43.3 53 0.0018 21.1 5.0 42 85-126 31-76 (172)
289 3hcw_A Maltose operon transcri 43.0 78 0.0027 21.7 6.9 71 81-159 28-100 (295)
290 3cg0_A Response regulator rece 42.9 49 0.0017 19.4 7.5 72 82-159 20-91 (140)
291 3hdv_A Response regulator; PSI 42.8 49 0.0017 19.3 7.4 71 82-159 18-90 (136)
292 1sqs_A Conserved hypothetical 42.5 60 0.002 21.9 5.4 23 107-131 69-91 (242)
293 3kbq_A Protein TA0487; structu 42.4 62 0.0021 21.0 5.1 43 82-126 23-69 (172)
294 3hdg_A Uncharacterized protein 42.0 51 0.0018 19.3 6.8 70 82-159 18-88 (137)
295 3u7r_A NADPH-dependent FMN red 41.9 72 0.0024 20.9 5.6 39 3-42 1-42 (190)
296 3huu_A Transcription regulator 41.3 85 0.0029 21.6 6.6 71 81-159 43-115 (305)
297 3miz_A Putative transcriptiona 41.2 84 0.0029 21.5 7.2 67 82-157 31-99 (301)
298 3zxs_A Cryptochrome B, rscryb; 41.2 73 0.0025 24.8 6.1 71 81-160 66-141 (522)
299 3o74_A Fructose transport syst 41.1 78 0.0027 21.1 8.9 72 81-159 18-91 (272)
300 1o97_D Electron transferring f 41.1 98 0.0034 22.3 9.0 36 6-42 2-43 (320)
301 3brs_A Periplasmic binding pro 41.1 82 0.0028 21.3 6.6 72 81-158 23-98 (289)
302 3r7f_A Aspartate carbamoyltran 40.8 98 0.0033 22.2 9.4 64 82-154 49-118 (304)
303 3t6k_A Response regulator rece 40.6 55 0.0019 19.3 6.9 70 82-159 15-87 (136)
304 2fz5_A Flavodoxin; alpha/beta 40.5 57 0.0019 19.4 6.8 45 81-131 14-58 (137)
305 3dz1_A Dihydrodipicolinate syn 40.5 75 0.0026 22.6 5.8 76 81-159 64-143 (313)
306 2g2c_A Putative molybdenum cof 40.4 44 0.0015 21.3 4.2 36 91-126 38-76 (167)
307 3eul_A Possible nitrate/nitrit 40.4 59 0.002 19.5 7.3 72 82-159 26-98 (152)
308 4e7p_A Response regulator; DNA 40.2 59 0.002 19.5 7.7 72 82-159 31-103 (150)
309 3ayv_A Putative uncharacterize 40.1 50 0.0017 22.2 4.8 78 18-117 75-152 (254)
310 3kke_A LACI family transcripti 40.1 89 0.003 21.5 10.1 71 81-159 31-103 (303)
311 3fkr_A L-2-keto-3-deoxyarabona 40.1 99 0.0034 22.0 7.6 77 81-159 64-146 (309)
312 3ih5_A Electron transfer flavo 40.0 83 0.0028 21.1 6.0 45 81-126 22-66 (217)
313 2rdm_A Response regulator rece 39.9 54 0.0018 18.9 7.4 71 82-159 16-88 (132)
314 2goy_A Adenosine phosphosulfat 39.9 80 0.0027 21.9 5.8 35 5-44 55-89 (275)
315 3grf_A Ornithine carbamoyltran 39.6 1.1E+02 0.0036 22.2 8.6 43 102-154 84-126 (328)
316 1tmy_A CHEY protein, TMY; chem 39.4 52 0.0018 18.6 6.9 71 82-159 13-84 (120)
317 3qxc_A Dethiobiotin synthetase 39.3 50 0.0017 22.6 4.6 41 118-159 130-170 (242)
318 1q6o_A Humps, 3-keto-L-gulonat 39.2 50 0.0017 21.9 4.5 35 4-43 3-37 (216)
319 2bw0_A 10-FTHFDH, 10-formyltet 39.1 1.1E+02 0.0036 22.1 7.6 41 89-129 66-109 (329)
320 3pzy_A MOG; ssgcid, seattle st 39.1 42 0.0014 21.5 3.9 40 86-126 31-73 (164)
321 2vk2_A YTFQ, ABC transporter p 39.1 93 0.0032 21.4 8.1 72 81-158 18-91 (306)
322 3qvl_A Putative hydantoin race 39.0 37 0.0013 23.3 3.9 19 116-134 171-189 (245)
323 3o3m_B Beta subunit 2-hydroxya 38.6 41 0.0014 24.8 4.3 54 106-160 300-353 (385)
324 4a17_F RPL7A, 60S ribosomal pr 38.4 77 0.0026 22.1 5.3 47 108-158 129-175 (255)
325 1uf3_A Hypothetical protein TT 38.2 42 0.0014 21.9 4.0 8 123-130 68-75 (228)
326 3qfe_A Putative dihydrodipicol 38.1 1.1E+02 0.0037 21.9 7.4 79 81-161 67-150 (318)
327 2gwr_A DNA-binding response re 38.0 86 0.0029 20.7 6.8 69 82-158 16-84 (238)
328 1viz_A PCRB protein homolog; s 37.9 53 0.0018 22.6 4.5 49 108-159 22-70 (240)
329 2pln_A HP1043, response regula 37.8 61 0.0021 18.9 7.3 67 81-159 28-95 (137)
330 3gl9_A Response regulator; bet 37.7 59 0.002 18.7 7.6 70 82-159 13-85 (122)
331 1jlj_A Gephyrin; globular alph 37.7 72 0.0025 20.9 5.0 40 87-126 39-85 (189)
332 3rag_A Uncharacterized protein 37.6 18 0.00061 25.1 2.0 39 4-43 10-49 (242)
333 3jvd_A Transcriptional regulat 37.6 1E+02 0.0036 21.6 6.4 64 81-158 80-144 (333)
334 2fn9_A Ribose ABC transporter, 37.5 95 0.0032 21.0 8.8 72 81-158 18-91 (290)
335 1uuy_A CNX1, molybdopterin bio 37.1 70 0.0024 20.3 4.8 32 95-126 43-78 (167)
336 2hmc_A AGR_L_411P, dihydrodipi 36.7 1.2E+02 0.0041 22.0 7.4 54 106-159 103-160 (344)
337 1ycg_A Nitric oxide reductase; 36.7 1.2E+02 0.0041 21.9 11.1 48 82-131 267-314 (398)
338 2oqr_A Sensory transduction pr 36.6 87 0.003 20.4 7.1 69 82-158 15-83 (230)
339 3b2n_A Uncharacterized protein 36.5 64 0.0022 18.8 6.5 72 82-159 14-86 (133)
340 2jba_A Phosphate regulon trans 36.4 61 0.0021 18.5 5.6 69 82-158 13-84 (127)
341 3inp_A D-ribulose-phosphate 3- 36.2 1E+02 0.0036 21.2 9.7 44 84-128 182-225 (246)
342 3n0r_A Response regulator; sig 36.0 1.1E+02 0.0037 21.3 8.2 68 82-158 171-241 (286)
343 3m6m_D Sensory/regulatory prot 35.9 70 0.0024 19.1 7.6 43 82-128 25-67 (143)
344 1m3s_A Hypothetical protein YC 35.8 51 0.0017 21.0 4.1 41 3-44 78-118 (186)
345 3blx_B Isocitrate dehydrogenas 35.8 1.2E+02 0.0041 22.3 6.2 26 15-40 163-189 (354)
346 3p52_A NH(3)-dependent NAD(+) 35.7 1.1E+02 0.0036 21.1 7.2 37 3-42 25-61 (249)
347 1jx7_A Hypothetical protein YC 35.6 63 0.0022 18.7 4.2 41 4-44 1-46 (117)
348 3cfy_A Putative LUXO repressor 35.5 69 0.0023 18.9 5.8 67 84-158 17-84 (137)
349 2rjo_A Twin-arginine transloca 35.4 95 0.0032 21.7 5.8 72 81-158 21-96 (332)
350 2px0_A Flagellar biosynthesis 35.4 1.1E+02 0.0038 21.5 6.0 33 8-40 110-142 (296)
351 1ylq_A Putative nucleotidyltra 35.3 13 0.00046 21.3 1.0 41 84-128 4-46 (96)
352 1s8n_A Putative antiterminator 35.3 87 0.003 20.0 7.4 69 82-157 24-92 (205)
353 2q8u_A Exonuclease, putative; 35.2 21 0.00071 25.5 2.2 24 81-106 47-70 (336)
354 2o95_A 26S proteasome non-ATPa 35.2 52 0.0018 21.4 4.0 10 119-128 87-96 (187)
355 2q5c_A NTRC family transcripti 35.0 95 0.0033 20.4 6.5 32 95-126 117-149 (196)
356 2dgd_A 223AA long hypothetical 35.0 99 0.0034 20.5 5.9 47 86-132 124-184 (223)
357 2ioy_A Periplasmic sugar-bindi 35.0 1E+02 0.0036 20.8 8.6 72 81-158 17-90 (283)
358 1mio_B Nitrogenase molybdenum 34.7 1.5E+02 0.005 22.4 12.6 43 85-128 352-394 (458)
359 2dri_A D-ribose-binding protei 34.6 1E+02 0.0036 20.7 7.8 72 81-158 17-90 (271)
360 2qu7_A Putative transcriptiona 34.5 1.1E+02 0.0037 20.8 6.9 68 81-158 23-92 (288)
361 2ef0_A Ornithine carbamoyltran 34.3 1.3E+02 0.0043 21.5 9.7 64 82-155 58-127 (301)
362 1cnz_A IPMDH, IMDH, protein (3 34.3 1.4E+02 0.0047 22.0 6.6 25 15-39 170-194 (363)
363 3cu2_A Ribulose-5-phosphate 3- 34.3 89 0.0031 21.4 5.2 45 83-128 173-219 (237)
364 3lte_A Response regulator; str 34.2 69 0.0024 18.5 7.9 43 82-128 17-59 (132)
365 2qsj_A DNA-binding response re 34.1 77 0.0026 19.0 6.4 70 82-158 14-86 (154)
366 1dos_A Aldolase class II; lyas 34.1 53 0.0018 24.2 4.2 78 83-160 16-111 (358)
367 2ixd_A LMBE-related protein; h 33.7 1.1E+02 0.0039 20.8 11.3 32 107-138 85-116 (242)
368 1wdn_A GLNBP, glutamine bindin 33.7 88 0.003 19.9 5.1 40 85-127 30-69 (226)
369 4fe7_A Xylose operon regulator 33.6 1.3E+02 0.0045 21.9 6.4 66 81-158 40-105 (412)
370 3q94_A Fructose-bisphosphate a 33.5 1.3E+02 0.0044 21.4 6.9 74 82-155 121-211 (288)
371 5nul_A Flavodoxin; electron tr 33.3 79 0.0027 18.9 5.7 44 82-131 14-57 (138)
372 2fyw_A Conserved hypothetical 33.2 42 0.0014 23.4 3.4 31 97-127 37-67 (267)
373 3vk5_A MOEO5; TIM barrel, tran 33.2 47 0.0016 23.6 3.6 47 111-158 58-105 (286)
374 2pl1_A Transcriptional regulat 33.2 68 0.0023 18.1 7.9 70 82-159 11-81 (121)
375 3h75_A Periplasmic sugar-bindi 33.1 1.3E+02 0.0043 21.2 9.0 72 81-159 20-95 (350)
376 1qgu_B Protein (nitrogenase mo 33.1 1.7E+02 0.0058 22.6 10.6 44 85-128 400-443 (519)
377 3tdn_A FLR symmetric alpha-bet 33.0 93 0.0032 21.0 5.2 16 110-125 39-54 (247)
378 2pju_A Propionate catabolism o 32.9 1.1E+02 0.0039 20.6 8.0 33 94-126 128-161 (225)
379 2xw6_A MGS, methylglyoxal synt 32.9 78 0.0027 19.6 4.3 35 94-128 48-83 (134)
380 3a10_A Response regulator; pho 32.8 67 0.0023 18.0 7.6 69 82-158 12-81 (116)
381 1rvg_A Fructose-1,6-bisphospha 32.7 82 0.0028 22.6 4.9 68 89-157 10-79 (305)
382 2xdq_A Light-independent proto 32.7 26 0.00091 26.4 2.5 46 105-150 113-159 (460)
383 3c3m_A Response regulator rece 32.6 77 0.0026 18.6 6.7 70 82-159 14-86 (138)
384 2fvy_A D-galactose-binding per 32.5 1.2E+02 0.0041 20.7 8.8 72 81-158 18-92 (309)
385 2l82_A Designed protein OR32; 32.4 82 0.0028 18.8 7.5 34 5-41 2-35 (162)
386 3nkl_A UDP-D-quinovosamine 4-d 32.4 44 0.0015 20.1 3.2 17 109-125 82-98 (141)
387 3f4w_A Putative hexulose 6 pho 32.4 1E+02 0.0036 20.0 6.1 43 83-126 91-134 (211)
388 3ctl_A D-allulose-6-phosphate 32.4 73 0.0025 21.7 4.5 42 85-128 96-137 (231)
389 3cz5_A Two-component response 32.2 83 0.0028 18.8 7.0 71 82-159 16-88 (153)
390 3big_A Fructose-1,6-bisphospha 32.0 1.4E+02 0.0047 21.7 5.8 42 85-128 170-211 (338)
391 2isw_A Putative fructose-1,6-b 31.9 91 0.0031 22.6 5.0 70 88-157 10-82 (323)
392 2pbq_A Molybdenum cofactor bio 31.7 94 0.0032 20.0 4.8 34 93-126 39-75 (178)
393 1i60_A IOLI protein; beta barr 31.7 97 0.0033 20.9 5.2 78 18-119 83-165 (278)
394 1a05_A IPMDH, IMDH, 3-isopropy 31.6 1.5E+02 0.0053 21.7 6.8 24 16-39 166-189 (358)
395 1dbq_A Purine repressor; trans 31.3 1.2E+02 0.0041 20.4 8.6 71 81-158 23-95 (289)
396 3ty4_A Probable homoisocitrate 31.1 1.3E+02 0.0043 22.3 5.7 24 16-39 163-199 (366)
397 3inp_A D-ribulose-phosphate 3- 31.1 69 0.0024 22.1 4.2 40 87-128 126-165 (246)
398 1gtz_A 3-dehydroquinate dehydr 31.1 1.1E+02 0.0036 19.7 6.1 75 76-157 29-106 (156)
399 3mm4_A Histidine kinase homolo 31.0 1.1E+02 0.0037 19.8 7.2 73 81-159 71-160 (206)
400 2xdq_B Light-independent proto 30.8 24 0.00081 27.2 2.0 25 105-129 104-129 (511)
401 3ajx_A 3-hexulose-6-phosphate 30.7 72 0.0025 20.8 4.2 32 6-42 2-33 (207)
402 2d1c_A Isocitrate dehydrogenas 30.6 1.6E+02 0.0056 22.7 6.4 26 15-40 165-191 (496)
403 3hut_A Putative branched-chain 30.5 1.4E+02 0.0048 20.9 7.8 47 82-128 154-203 (358)
404 3bbl_A Regulatory protein of L 30.4 1.3E+02 0.0044 20.4 7.6 70 81-158 24-95 (287)
405 3jr2_A Hexulose-6-phosphate sy 30.3 58 0.002 21.7 3.7 23 4-27 6-28 (218)
406 3e3m_A Transcriptional regulat 30.2 1.5E+02 0.005 21.0 8.5 68 81-156 86-155 (355)
407 3roj_A D-fructose 1,6-bisphosp 30.1 1.2E+02 0.004 22.4 5.2 42 85-128 214-255 (379)
408 3ctl_A D-allulose-6-phosphate 29.9 1.2E+02 0.0042 20.5 5.3 46 82-128 152-198 (231)
409 3u0h_A Xylose isomerase domain 29.8 88 0.003 21.2 4.7 75 20-119 85-170 (281)
410 4f3p_A Glutamine-binding perip 29.8 1.2E+02 0.0041 19.9 5.4 43 82-127 48-90 (249)
411 3c3k_A Alanine racemase; struc 29.6 1.3E+02 0.0045 20.3 7.8 69 81-158 24-94 (285)
412 1tqx_A D-ribulose-5-phosphate 29.4 1.3E+02 0.0046 20.3 5.8 54 90-143 109-162 (227)
413 1u0t_A Inorganic polyphosphate 29.4 58 0.002 23.1 3.7 37 1-37 1-38 (307)
414 3cu5_A Two component transcrip 29.2 92 0.0031 18.4 6.3 72 82-158 13-85 (141)
415 1wot_A Putative minimal nucleo 29.2 15 0.00053 21.1 0.6 70 82-158 11-80 (98)
416 2yva_A DNAA initiator-associat 29.1 74 0.0025 20.5 4.0 38 3-41 108-145 (196)
417 3g3k_A Glutamate receptor, ion 29.1 67 0.0023 21.3 3.9 45 82-126 35-89 (259)
418 3d8u_A PURR transcriptional re 29.0 1.3E+02 0.0045 20.1 6.4 70 81-158 19-90 (275)
419 3av0_A DNA double-strand break 29.0 59 0.002 23.8 3.8 18 109-126 50-67 (386)
420 2yvq_A Carbamoyl-phosphate syn 29.0 86 0.0029 19.4 4.1 40 90-129 62-106 (143)
421 3h5d_A DHDPS, dihydrodipicolin 28.8 1.6E+02 0.0054 21.0 8.2 54 106-159 87-143 (311)
422 1vp8_A Hypothetical protein AF 28.8 1.3E+02 0.0045 20.1 6.5 76 81-158 29-106 (201)
423 1uqr_A 3-dehydroquinate dehydr 28.8 1.2E+02 0.004 19.4 4.9 73 78-157 26-100 (154)
424 1xng_A NH(3)-dependent NAD(+) 28.6 1.4E+02 0.0049 20.5 6.6 35 4-41 25-59 (268)
425 4dz1_A DALS D-alanine transpor 28.6 1.3E+02 0.0044 19.9 5.3 40 85-127 57-96 (259)
426 1k68_A Phytochrome response re 28.5 89 0.0031 18.0 7.2 73 81-159 12-94 (140)
427 2m1z_A LMO0427 protein; homolo 28.5 22 0.00075 21.2 1.1 45 84-130 22-68 (106)
428 2h3h_A Sugar ABC transporter, 28.5 1.5E+02 0.005 20.4 8.2 72 81-158 16-90 (313)
429 1ml4_A Aspartate transcarbamoy 28.4 1.2E+02 0.0041 21.7 5.2 41 105-155 87-127 (308)
430 3blx_A Isocitrate dehydrogenas 28.3 1.8E+02 0.006 21.4 6.2 26 15-40 157-183 (349)
431 3ldv_A Orotidine 5'-phosphate 28.3 1.5E+02 0.0051 20.5 8.2 29 4-37 27-55 (255)
432 2xbl_A Phosphoheptose isomeras 28.3 74 0.0025 20.4 3.9 42 3-45 115-156 (198)
433 2iks_A DNA-binding transcripti 28.3 1.4E+02 0.0048 20.2 9.8 71 81-158 36-108 (293)
434 2hqr_A Putative transcriptiona 28.3 1.2E+02 0.0042 19.5 7.5 66 82-159 11-77 (223)
435 2pjk_A 178AA long hypothetical 28.3 1.2E+02 0.0042 19.5 5.6 44 83-126 41-88 (178)
436 1mio_B Nitrogenase molybdenum 28.2 49 0.0017 25.0 3.3 27 105-131 112-143 (458)
437 2xed_A Putative maleate isomer 28.2 1.5E+02 0.0052 20.5 6.5 47 86-132 162-221 (273)
438 2ark_A Flavodoxin; FMN, struct 28.1 1.2E+02 0.0041 19.4 6.6 45 81-131 19-64 (188)
439 3qi7_A Putative transcriptiona 28.0 1.8E+02 0.0063 21.4 7.0 93 6-128 14-120 (371)
440 1b93_A Protein (methylglyoxal 27.9 1.2E+02 0.0041 19.3 5.4 35 94-128 56-91 (152)
441 3p0r_A Azoreductase; structura 27.9 68 0.0023 21.2 3.7 42 3-44 3-51 (211)
442 3i8o_A KH domain-containing pr 27.9 1.2E+02 0.0039 19.1 6.9 67 82-161 58-135 (142)
443 3dx5_A Uncharacterized protein 27.8 78 0.0027 21.6 4.1 78 18-119 83-163 (286)
444 1dd9_A DNA primase, DNAG; topr 27.8 1.1E+02 0.0038 22.1 5.0 37 4-40 206-245 (338)
445 3bzc_A TEX; helix-turn-helix, 27.7 41 0.0014 27.6 2.9 47 108-158 372-421 (785)
446 1t0i_A YLR011WP; FMN binding p 27.7 1.2E+02 0.0041 19.3 5.1 21 109-131 76-96 (191)
447 1pg5_A Aspartate carbamoyltran 27.6 1.7E+02 0.0057 20.9 7.7 64 82-155 51-121 (299)
448 3kzg_A Arginine 3RD transport 27.5 99 0.0034 20.0 4.5 43 82-127 29-71 (237)
449 1nmo_A Hypothetical protein YB 27.4 45 0.0015 22.9 2.8 30 98-127 35-64 (247)
450 3lwz_A 3-dehydroquinate dehydr 27.4 1.2E+02 0.0042 19.3 5.3 74 77-157 31-106 (153)
451 3sz8_A 2-dehydro-3-deoxyphosph 27.3 1.7E+02 0.0057 20.8 6.2 66 81-158 77-142 (285)
452 2y88_A Phosphoribosyl isomeras 27.2 97 0.0033 20.7 4.5 48 108-156 151-199 (244)
453 1yio_A Response regulatory pro 27.2 1.2E+02 0.0042 19.2 6.8 70 82-159 15-85 (208)
454 3iz5_H 60S ribosomal protein L 27.1 75 0.0026 22.2 3.7 48 108-159 132-179 (258)
455 3gbv_A Putative LACI-family tr 27.1 1.5E+02 0.0051 20.1 8.7 73 81-159 25-103 (304)
456 3sds_A Ornithine carbamoyltran 27.1 1.9E+02 0.0064 21.2 8.5 65 82-156 79-149 (353)
457 2xhz_A KDSD, YRBH, arabinose 5 26.8 1E+02 0.0035 19.4 4.4 41 4-45 96-136 (183)
458 3kjx_A Transcriptional regulat 26.8 1.7E+02 0.0057 20.6 8.8 68 81-156 84-153 (344)
459 3sho_A Transcriptional regulat 26.6 97 0.0033 19.6 4.2 42 3-45 86-127 (187)
460 1t5b_A Acyl carrier protein ph 26.6 1.3E+02 0.0044 19.2 7.2 21 109-131 78-98 (201)
461 3rys_A Adenosine deaminase 1; 26.6 1.8E+02 0.0063 21.0 8.5 41 86-126 184-224 (343)
462 2w6r_A Imidazole glycerol phos 26.5 1.1E+02 0.0036 20.9 4.6 18 109-126 64-81 (266)
463 2xij_A Methylmalonyl-COA mutas 26.5 1.6E+02 0.0055 24.2 6.0 26 106-131 642-667 (762)
464 3okp_A GDP-mannose-dependent a 26.5 1.7E+02 0.0058 20.6 11.5 42 1-42 1-44 (394)
465 4edg_A DNA primase; catalytic 26.5 42 0.0014 24.3 2.5 35 5-39 196-230 (329)
466 1zh2_A KDP operon transcriptio 26.5 91 0.0031 17.5 6.9 70 82-159 12-81 (121)
467 3o21_A Glutamate receptor 3; p 26.4 1.8E+02 0.0063 20.9 7.6 47 82-128 144-194 (389)
468 3s5o_A 4-hydroxy-2-oxoglutarat 26.3 1.8E+02 0.006 20.6 8.4 62 97-159 83-151 (307)
469 3tpf_A Otcase, ornithine carba 26.1 1.8E+02 0.0062 20.8 8.0 65 82-156 49-119 (307)
470 3pao_A Adenosine deaminase; st 26.0 1.8E+02 0.0063 20.8 6.1 65 86-157 181-245 (326)
471 3mw8_A Uroporphyrinogen-III sy 26.0 1.2E+02 0.004 20.3 4.7 78 83-160 131-229 (240)
472 3gyb_A Transcriptional regulat 25.9 1.5E+02 0.0052 19.8 6.2 67 81-159 21-88 (280)
473 3hsy_A Glutamate receptor 2; l 25.9 1.8E+02 0.006 20.8 5.9 47 82-128 135-188 (376)
474 2pcq_A Putative dihydrodipicol 25.9 1.7E+02 0.0059 20.4 6.3 63 95-159 62-127 (283)
475 1vzw_A Phosphoribosyl isomeras 25.8 1.5E+02 0.0052 19.8 6.4 48 108-156 148-196 (244)
476 1no5_A Hypothetical protein HI 25.8 22 0.00076 21.1 0.9 45 82-129 12-56 (114)
477 2fep_A Catabolite control prot 25.8 1.6E+02 0.0054 20.0 8.3 70 81-158 32-103 (289)
478 2yyb_A Hypothetical protein TT 25.7 40 0.0014 23.2 2.2 23 105-127 43-65 (242)
479 3r0j_A Possible two component 25.7 1.5E+02 0.0051 19.7 7.4 70 82-159 34-104 (250)
480 3uow_A GMP synthetase; structu 25.6 2.4E+02 0.0082 22.0 8.0 37 4-43 255-291 (556)
481 3nhm_A Response regulator; pro 25.6 1E+02 0.0035 17.7 7.0 68 83-159 16-86 (133)
482 3cvo_A Methyltransferase-like 25.6 78 0.0027 21.1 3.6 48 81-128 61-131 (202)
483 3crn_A Response regulator rece 25.4 1E+02 0.0036 17.8 7.3 70 82-159 14-84 (132)
484 3hbm_A UDP-sugar hydrolase; PS 25.4 1.3E+02 0.0044 21.1 4.9 24 108-131 58-81 (282)
485 1tk9_A Phosphoheptose isomeras 25.3 96 0.0033 19.6 4.0 42 3-45 109-150 (188)
486 3clk_A Transcription regulator 25.2 1.6E+02 0.0055 19.9 7.7 70 81-158 24-96 (290)
487 3uhf_A Glutamate racemase; str 25.1 55 0.0019 23.0 2.9 13 116-128 83-95 (274)
488 1dbw_A Transcriptional regulat 25.1 1E+02 0.0035 17.6 7.6 70 82-159 14-84 (126)
489 3pdi_A Nitrogenase MOFE cofact 25.1 15 0.0005 28.2 -0.1 27 105-131 138-165 (483)
490 2x7x_A Sensor protein; transfe 25.1 1.7E+02 0.006 20.2 7.6 72 81-158 21-95 (325)
491 1h5y_A HISF; histidine biosynt 25.1 98 0.0033 20.6 4.2 49 109-157 157-205 (253)
492 3klo_A Transcriptional regulat 25.0 1.5E+02 0.005 19.3 6.2 69 84-158 20-91 (225)
493 4hs4_A Chromate reductase; tri 25.0 1.2E+02 0.0041 19.8 4.5 34 6-40 8-45 (199)
494 2kyr_A Fructose-like phosphotr 24.9 47 0.0016 19.9 2.1 45 83-129 24-70 (111)
495 1req_A Methylmalonyl-COA mutas 24.9 1.5E+02 0.0051 24.2 5.6 26 106-131 634-659 (727)
496 3sm9_A Mglur3, metabotropic gl 24.9 2.2E+02 0.0076 21.4 9.8 17 110-126 258-274 (479)
497 1rrm_A Lactaldehyde reductase; 24.9 1.4E+02 0.0047 21.9 5.1 45 83-127 47-97 (386)
498 3heb_A Response regulator rece 24.8 1.2E+02 0.004 18.1 6.9 73 82-159 15-98 (152)
499 1di6_A MOGA, molybdenum cofact 24.8 1.3E+02 0.0045 19.8 4.6 40 87-126 28-73 (195)
500 1zq6_A Otcase, ornithine carba 24.8 2.1E+02 0.0072 21.0 8.2 49 105-154 112-161 (359)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.97 E-value=1.2e-29 Score=165.93 Aligned_cols=142 Identities=23% Similarity=0.317 Sum_probs=119.2
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
+++++||||+|+++.+..++++|+.+|+..+++|+++||.+........ ... ......+...+..+
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~ 68 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPA-------------LDP-VLSELLDAEAAHAK 68 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGG-------------GHH-HHHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-------------ccc-ccHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999886532100 000 11122223344556
Q ss_pred HHHHHHHHHhhhcCC-ceEEEEecCChhHHHHH-HHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 82 DALDLLDTASRQKEA-NIVAKIYWGDARERLLE-AIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~-~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
+.++.+.+.+...|+ .+++.+..|++.++|++ ++++.++||||||+++++.+.++++||++++++++++|||||||
T Consensus 69 ~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 69 DAMRQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHHHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 778888888888899 99999999999999999 99999999999999999999999999999999999999999997
No 2
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.97 E-value=9.4e-30 Score=167.29 Aligned_cols=146 Identities=25% Similarity=0.282 Sum_probs=101.7
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++++||||+|+|+.+..++++|+.+|+..+++|+++||.+....... . ..+. .+.... +.. .+..
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~--~--~~~~--~~~~~~---~~~----~~~~ 69 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDT--P--YGTA--IPLDTE---TTY----DAML 69 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC------------CTTC--CCSSSC---CCH----HHHH
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccccc--c--cccc--cCcCHH---HHH----HHHH
Confidence 8899999999999999999999999999999999999999887542100 0 1110 111100 011 1111
Q ss_pred HHHHHHHHHHhhhcCCc-eEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 81 IDALDLLDTASRQKEAN-IVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++..+.+.+.+.+.|+. +++.+..|++.++|++++++.++||||||+++++++. +++||++++++++++||||+||++
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 70 DVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCC
Confidence 33344444445555776 5778888999999999999999999999999999998 999999999999999999999986
Q ss_pred C
Q 031195 160 S 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 149 ~ 149 (150)
T 3tnj_A 149 D 149 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.96 E-value=6.4e-29 Score=166.57 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=115.7
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCC--CC-CcccCcchhhhHhhccc
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSP--LI-PLTEFREPETMEKYNVK 78 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 78 (164)
+++++||||+|+++.+..++++|+.+|+..+++|+++||.+...... ...+.+ +. +.... ....+...+
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~ 74 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEE-----LMDGYSFFYDNAEIEL---KDIKEKLKE 74 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGC-----CC------------CC---TTSHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccc-----cccccccccccccccH---HHHHHHHHH
Confidence 37899999999999999999999999999999999999988653210 000000 00 00000 011111223
Q ss_pred chHHHHHHHHHHhhhcCCceEE--EEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 79 TDIDALDLLDTASRQKEANIVA--KIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~--~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
..++.++.+.+.+...|+++++ .+..|++.++|++++++.++||||||+++++++.++++||++++++++++||||||
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 75 EASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEE
Confidence 3456777777777777888888 88889999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 031195 157 KDPSF 161 (164)
Q Consensus 157 ~~~~~ 161 (164)
|+...
T Consensus 155 ~~~~~ 159 (170)
T 2dum_A 155 KEVDE 159 (170)
T ss_dssp CCCCC
T ss_pred ccCCc
Confidence 97654
No 4
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.96 E-value=5e-29 Score=165.83 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=117.5
Q ss_pred CC-CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchh-hhhhccCCCCCCC-CcccCcchhhhHhhcc
Q 031195 1 MA-GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDES-RNLMWAKSGSPLI-PLTEFREPETMEKYNV 77 (164)
Q Consensus 1 m~-~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (164)
|. ++++||||+|+++.+..|+++|+.+|+..+++|+++||.+...... ....+...+ ... +... .......+...
T Consensus 1 M~~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 78 (162)
T 1mjh_A 1 MSVMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGV-AGLNKSVE-EFENELKNKLT 78 (162)
T ss_dssp --CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC------------------CH-HHHHHHHHHHH
T ss_pred CccccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccc-cccccchh-hhHHHHHHHHH
Confidence 55 6899999999999999999999999999999999999987541000 000000000 000 1000 00001122223
Q ss_pred cchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 78 KTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
+..++.++.+.+.+...|+++++.+..|++.++|++++++.++|+||||+++++++.++++||++++++++++|||||||
T Consensus 79 ~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 79 EEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEe
Confidence 44567777788888888999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
+..
T Consensus 159 ~~~ 161 (162)
T 1mjh_A 159 RKN 161 (162)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.96 E-value=1.7e-28 Score=162.41 Aligned_cols=140 Identities=21% Similarity=0.176 Sum_probs=116.1
Q ss_pred CCCCceEEEEeC--CCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhccc
Q 031195 1 MAGDRKIGVALD--FSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVK 78 (164)
Q Consensus 1 m~~~~~iLv~vd--~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|+++++||||+| +++.+..++++|+.+|+..+++|+++||.+...... . . .. .....+...+
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~------~-----~---~~--~~~~~~~~~~ 75 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI------F-----D---SL--TPSKIQAKRK 75 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC------C-----C---SS--HHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc------c-----c---cC--CHHHHHHHHH
Confidence 567999999999 999999999999999999999999999998864210 0 0 00 1122223344
Q ss_pred chHHHHHHHHHHhhhcCC-ceEEEEec-CChhHHHHHH-HhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 79 TDIDALDLLDTASRQKEA-NIVAKIYW-GDARERLLEA-IEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~-~~~~~~~~-g~~~~~I~~~-a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
..++.++.+.+.+...|+ .+++.+.. |++.++|+++ +++.++||||||+++++++. .++||++++++++++||||+
T Consensus 76 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 76 HVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEE
Confidence 556778888888888898 59999999 9999999999 99999999999999999887 58999999999999999999
Q ss_pred Ee
Q 031195 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
||
T Consensus 155 V~ 156 (156)
T 3fg9_A 155 VR 156 (156)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.96 E-value=6.7e-29 Score=162.55 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=115.6
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
||++||||+|+|+.+..++++|+.+|+..+++|+++||.+....... ..+. .+.... +...+...+..++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~-----~~~~--~~~~~~---~~~~~~~~~~~~~ 70 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEA-----SLSM--ARPEQL---DIPDDALKDYATE 70 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHH-----TBSS--CCCGGG---CCCTTHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc-----cccc--cChhhh---hhHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999987531110 1000 000000 0111122334467
Q ss_pred HHHHHHHHhhhcCCce---EEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 83 ALDLLDTASRQKEANI---VAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~---~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.++.+.+.+...|+++ ++.+..|++.++|++++++.++||||||+++++++.++++||++++++++++||||||
T Consensus 71 ~l~~~~~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 71 IAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 7888888888889888 8999999999999999999999999999999999999999999999999999999986
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.96 E-value=5e-28 Score=161.39 Aligned_cols=144 Identities=22% Similarity=0.174 Sum_probs=113.1
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEE--EEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccc
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYII--HINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKT 79 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
.++++||||+|+|+.+..|+++|+.+|+ .+++|+++ ||.+...... +... ... ...+...+.
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~--------~~~~-~~~------~~~~~~~~~ 78 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA--------ADIL-KDE------SYKVTGTAP 78 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-----------------------------------CCT
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc--------cccc-ccH------HHHHHHHHH
Confidence 3689999999999999999999999999 99999999 8876543200 0000 000 111122344
Q ss_pred hHHHHHHHHHHhhhcCCc-eEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 80 DIDALDLLDTASRQKEAN-IVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.++.++.+.+.+...|++ +++.+..|++.++|++++++.++||||||+++++++.++++||++++++++++|||||||+
T Consensus 79 ~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 79 IYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeC
Confidence 567788888888888898 9999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 031195 159 PSF 161 (164)
Q Consensus 159 ~~~ 161 (164)
+..
T Consensus 159 ~~~ 161 (163)
T 1tq8_A 159 TEG 161 (163)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 8
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.96 E-value=4.1e-28 Score=157.33 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=114.2
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhc-CCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcc-cchH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNL-LDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNV-KTDI 81 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (164)
|++||||+|+++.+..++++|+.+| +..+++|+++||.+......... ... ....+... +..+
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~ 65 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAV--------------LAA-YDEIEMKEEEKAK 65 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHH--------------HHH-HHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccc--------------cCc-HHHHHHHHHHHHH
Confidence 6899999999999999999999999 89999999999998875321100 000 11112222 4556
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
+.++.+.+.+...|+++++.+..|++.++|+++++ ++||||||+++++++.+++ ||++++++++++||||+||
T Consensus 66 ~~l~~~~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 66 LLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 78888888888889999999999999999999999 8999999999999999988 9999999999999999997
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.95 E-value=4.3e-28 Score=160.48 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=111.8
Q ss_pred CCCceEEEEeCC-CccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 2 AGDRKIGVALDF-SPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 2 ~~~~~iLv~vd~-s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+|++||||+|+ ++.+..++++|+.+|+..+++|+++||.+.... . . + ...+..
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~----------------~----~-~----~~~~~~ 76 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR----------------T----K-D----EDIIEA 76 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT----------------S----C-H----HHHHHH
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc----------------c----c-H----HHHHHH
Confidence 458999999999 999999999999999999999999999886421 0 0 1 112334
Q ss_pred HHHHHHHHHHhhhcCCceEEE--EecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAK--IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~--~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
++.++.+.+.+...++.+++. +..|++.++|++++++.++||||||+++++++.++++||++++++++++|||||||
T Consensus 77 ~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 77 KETLSWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 677778888888888877754 45599999999999999999999999999999999999999999999999999996
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.95 E-value=1.3e-27 Score=154.86 Aligned_cols=136 Identities=27% Similarity=0.305 Sum_probs=104.2
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
++++||||+|+++.+..++++|+.+|+..+++++++||.++.... + .+ ..+ .+. .+...+..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-----~--~~--~~~-~~~------~~~~~~~~~~ 64 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY-----L--GE--PFF-EEA------LRRRLERAEG 64 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC------------------------------CHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcc-----c--cc--cch-HHH------HHHHHHHHHH
Confidence 479999999999999999999999999999999999998753210 0 00 001 001 0011112233
Q ss_pred HHHHHHHHhhhcCC-ceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEA-NIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.++.+.+ ..|+ ++++.+..|++.++|++++++.++||||||+++++++.++++||++++++++++|||||+|
T Consensus 65 ~l~~~~~---~~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 65 VLEEARA---LTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHHH---HHCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHH---HcCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 3333333 3678 8888888999999999999999999999999999999999999999999999999999997
No 11
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.94 E-value=1.8e-26 Score=155.32 Aligned_cols=150 Identities=25% Similarity=0.446 Sum_probs=104.3
Q ss_pred CCceEEEEeCCCc---------cHHHHHHHHHHhc-CC--CCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchh
Q 031195 3 GDRKIGVALDFSP---------SSKFALSWAVNNL-LD--KGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPE 70 (164)
Q Consensus 3 ~~~~iLv~vd~s~---------~~~~al~~a~~la-~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (164)
.+++||||+|+++ .+..++++|+.++ +. .+++|+++||.+..... +...+......... .
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~-----~~~~~~~~~~~~~~---~ 75 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG-----FDDVDSIYASPEDF---R 75 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC---------------CCCCSHHHH---H
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccc-----ccccccccCCHHHH---H
Confidence 5799999999999 9999999999986 44 68999999998654211 00000000000000 0
Q ss_pred hhHhhcccchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC
Q 031195 71 TMEKYNVKTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP 150 (164)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~ 150 (164)
...+...+..++.++.+.+.+...|+.+++.+..|++.++|++++++.++||||||+++++++.++++||++++++++++
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~ 155 (175)
T 2gm3_A 76 DMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE 155 (175)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCC
Confidence 11111122345677777777777899999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCC
Q 031195 151 CPVTIVKDPS 160 (164)
Q Consensus 151 ~pVliv~~~~ 160 (164)
|||||||+..
T Consensus 156 ~pVlvv~~~~ 165 (175)
T 2gm3_A 156 CPVMTIKRNA 165 (175)
T ss_dssp SCEEEEECCG
T ss_pred CCEEEEcCCc
Confidence 9999999764
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.94 E-value=7.3e-27 Score=152.20 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=106.2
Q ss_pred CceEEEEeCCCcc--HHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 4 DRKIGVALDFSPS--SKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 4 ~~~iLv~vd~s~~--~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.++||||+|+|+. +..++++|+.+|+..+++|+++||.+...... ..+..... . .....+..+
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~------~~~~~~~~--~-------~~~~~~~~~ 65 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYA------SLGMAYTA--E-------LPGMDELRE 65 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-------------------------------CHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccc------cccccccc--h-------hhhHHHHHH
Confidence 3799999999999 99999999999999999999999998764211 00000000 0 001112234
Q ss_pred HHHHHHHHHhhhcC---CceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 82 DALDLLDTASRQKE---ANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 82 ~~l~~~~~~~~~~~---~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
+.++.+.+.+.+.+ ..+++.+..|++.++|++++++.++||||||+++ +++.++++||++++++++++||||+||
T Consensus 66 ~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 66 GSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 56666677776664 4578889999999999999999999999999995 788889999999999999999999997
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.94 E-value=1.3e-26 Score=169.34 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=117.5
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|++|++|||++|+|+.+..++++|+.+|+..+++|+++|+.+...... .+ ... ............+..
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~-------~~--~~~---~~~~~~~~~~~~~~~ 71 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDM-------TT--LLS---PDERNAMRKGVINQK 71 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGC-------TT--TSC---HHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhh-------cc--ccC---hhhHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999987543210 00 000 001111222223344
Q ss_pred HHHHHHHHHHhhhcCCceEEEEe-cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIY-WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++.++.+.+.+...|+++++.+. .|++.++|.+++++.++||||||+++.+++.++++||++++++++++||||++|+.
T Consensus 72 ~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 72 TAWIKQQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 56777777777778999999999 79999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 031195 160 SF 161 (164)
Q Consensus 160 ~~ 161 (164)
..
T Consensus 152 ~~ 153 (319)
T 3olq_A 152 EW 153 (319)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.94 E-value=7.9e-26 Score=147.00 Aligned_cols=139 Identities=25% Similarity=0.227 Sum_probs=103.8
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|+++||||+|+++.+..++++|+.+|+..+++|+++||.+..... + .+ . .. ........+..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-----~--~~--~---~~----~~~~~~~~~~~~~ 64 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDL-----Y--TG--L---ID----VNMSSMQDRISTE 64 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGG-----C--CC--C---EE----HHHHHHTTCCCCH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhh-----h--cc--c---cc----cchHHHHHHHHHH
Confidence 479999999999999999999999999999999999998542210 0 00 0 00 0000111111223
Q ss_pred HHHHHHHHhhhcCCce-EEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 83 ALDLLDTASRQKEANI-VAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~-~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
..+.+.+.+...|+.+ ++.+..|++.++|++++++.++||||||++ ++++.+ +||++++++++++|||||+|+..
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 65 TQKALLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHHHHHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred HHHHHHHHHHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 3344444555567776 567788999999999999999999999999 887776 38999999999999999999764
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.93 E-value=3.7e-26 Score=165.34 Aligned_cols=144 Identities=18% Similarity=0.164 Sum_probs=118.5
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++++||||+|+++.+..++++|+.+|+..+++|+++||.+...... ... . . ......+...+..
T Consensus 19 m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~------~~~--~-----~-~~~~~~~~~~~~~ 84 (294)
T 3loq_A 19 YFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLST------VSG--G-----I-DIDHYIDEMSEKA 84 (294)
T ss_dssp SSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-------------C-----C-CTTHHHHHHHHHH
T ss_pred HHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccc------ccc--c-----c-cHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999998764321 000 0 0 0111222233455
Q ss_pred HHHHHHHHHHhhhcCCceEE-EEe-cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVA-KIY-WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~-~~~-~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
++.++.+.+.+...|+++++ .+. .|++.++| ++++.++|+||||+++.+.+.++++||++++++++++|||+++|+
T Consensus 85 ~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 162 (294)
T 3loq_A 85 EEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKH 162 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecC
Confidence 67888888888888999998 778 89999999 999999999999999999999999999999999999999999997
Q ss_pred CC
Q 031195 159 PS 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 163 ~~ 164 (294)
T 3loq_A 163 DM 164 (294)
T ss_dssp CT
T ss_pred cc
Confidence 65
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=6.9e-25 Score=158.43 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=111.9
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+++++|||++|+++.+..++++|+.+|+..+++|+++|+.++ +..
T Consensus 4 M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~----------------------------------~~~ 49 (290)
T 3mt0_A 4 MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR----------------------------------RDH 49 (290)
T ss_dssp TTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS----------------------------------SCC
T ss_pred hhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc----------------------------------HHH
Confidence 6789999999999999999999999999999999999999763 111
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++.++.+.+.+...|+++++.+.. |++.++|.+++++.++||||||+++.+.+.+.++||++++++++++||||++|+.
T Consensus 50 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 50 SAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 456667777777889999998885 7899999999999999999999999999999999999999999999999999953
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.91 E-value=5.8e-24 Score=154.85 Aligned_cols=142 Identities=23% Similarity=0.349 Sum_probs=112.6
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
+++++||||+|+++.+..++++|+.+|+..+++|+++||.++.... +... ..+ ....+...+..+
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~-----~~~~---~~~-------~~~~~~~~~~~~ 81 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVAT-----WLEV---PLP-------PGVLRWQQDHGR 81 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCC-----TTCC---CCC-------HHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccc-----cccC---CCC-------chhhHHHHHHHH
Confidence 4689999999999999999999999999999999999998743210 0000 001 011111223345
Q ss_pred HHHHHHHHHhhhc-----CCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 82 DALDLLDTASRQK-----EANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 82 ~~l~~~~~~~~~~-----~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
+.++.+.+.+... |+++++.+..|++.++|+++++ ++||||||+++.+++.++++||++++++++++|||+++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv 159 (309)
T 3cis_A 82 HLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 159 (309)
T ss_dssp HHHHHHHHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEE
Confidence 6667777666654 8899999999999999999998 69999999999999999999999999999999999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|+..
T Consensus 160 ~~~~ 163 (309)
T 3cis_A 160 HDED 163 (309)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 9764
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.91 E-value=9.4e-24 Score=136.73 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe-cC-CCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN-PN-SLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
++++||||+|+++.+..++++|+.+|+..+++|+++||. +. +... .+...+. +... ...+...+..
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~----~~~~~~~---~~~~-----~~~~~~~~~~ 70 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLER----ANVTFGL---PFPP-----EIKEESKKRI 70 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHH----HHHHHCC---CCCT-----HHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccc----cccccCC---CCCh-----HHHHHHHHHH
Confidence 589999999999999999999999999999999999998 53 1010 0000011 1000 1111112233
Q ss_pred HHHHHHHHHH--hhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTA--SRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~--~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
++.++.+ +. +...| ++++.+..|++.++|++++++.++||||||++++ |++++++++++||||++|
T Consensus 71 ~~~l~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 71 ERRLREV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHHHHHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEECC
T ss_pred HHHHHHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEeeC
Confidence 4556666 55 34556 7888888999999999999999999999998865 899999999999999986
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.91 E-value=1e-23 Score=152.29 Aligned_cols=138 Identities=17% Similarity=0.122 Sum_probs=107.4
Q ss_pred CCceEEEEeCCCcc-------HHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhh
Q 031195 3 GDRKIGVALDFSPS-------SKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKY 75 (164)
Q Consensus 3 ~~~~iLv~vd~s~~-------~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (164)
.+++||||+|+++. +..++++|..+|+..+++++++||.+...... ..+. . ...
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-----------~~~~--~---~~~--- 193 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS-----------ADPT--F---QLS--- 193 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--------------------C--H---HHH---
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc-----------cCch--h---HHH---
Confidence 47899999999998 89999999999999999999999998764211 0010 0 011
Q ss_pred cccchHHHHHHHHHHhhhcCCc-eEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 76 NVKTDIDALDLLDTASRQKEAN-IVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
.+..++..+.+.+++.+.|+. +++.+..|++.++|++++++.++||||||+++++++.++++||++++++++++||||
T Consensus 194 -~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVL 272 (290)
T 3mt0_A 194 -ETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVL 272 (290)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEE
T ss_pred -HHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEE
Confidence 111123344445555555773 667788899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 031195 155 IVKDPS 160 (164)
Q Consensus 155 iv~~~~ 160 (164)
++|+..
T Consensus 273 vv~~~~ 278 (290)
T 3mt0_A 273 VLKPDD 278 (290)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 999754
No 20
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.91 E-value=3.5e-24 Score=152.97 Aligned_cols=149 Identities=18% Similarity=0.121 Sum_probs=113.2
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccC-cchhhhHhhcccchHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEF-REPETMEKYNVKTDIDA 83 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (164)
++||||+|+|+.+..++++|+.+|+..+++++++||.+...... ....+..... .+. ..++...+...+..++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARI----PELLDFGALT-VPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTH----HHHC--------CHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCccc----ccccCchHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987543110 0001110000 000 00000012223445677
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc-ccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG-TVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~-~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
++.+.+.+...|+++++.+..|++.+.|+++ +.++|+||||+++++ ++.++++||++++++++++|||+++|+..
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 7888888888899999999999999999999 778999999999998 88889999999999999999999999754
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=4.1e-23 Score=150.77 Aligned_cols=145 Identities=15% Similarity=0.164 Sum_probs=112.0
Q ss_pred CCceEEEEeCCCc-------cHHHHHHHHHHhcCCC--CCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhH
Q 031195 3 GDRKIGVALDFSP-------SSKFALSWAVNNLLDK--GDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETME 73 (164)
Q Consensus 3 ~~~~iLv~vd~s~-------~~~~al~~a~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (164)
.+++||||+|+++ .+..++++|..+++.. +++|+++||.+...... .. ..+ ....+.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~------~~---~~~--~~~~~~--- 220 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI------AI---ELP--DFDPNL--- 220 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC------CT---TCT--TCCHHH---
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh------hc---cCC--cccHHH---
Confidence 4789999999999 4699999999999998 99999999998764221 00 001 011111
Q ss_pred hhcccchHHHHHHHHHHhhhcCC-ceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCcc
Q 031195 74 KYNVKTDIDALDLLDTASRQKEA-NIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCP 152 (164)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~p 152 (164)
...+..++..+.+.+++.+.++ .++..+..|++.++|++++++.++||||||+++++++.++++||++++++++++||
T Consensus 221 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~p 299 (319)
T 3olq_A 221 -YNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCD 299 (319)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSE
T ss_pred -HHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCC
Confidence 1112223444555555666665 45677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q 031195 153 VTIVKDPSFG 162 (164)
Q Consensus 153 Vliv~~~~~~ 162 (164)
||++|+..+.
T Consensus 300 VLvv~~~~~~ 309 (319)
T 3olq_A 300 LLAIKPDGFT 309 (319)
T ss_dssp EEEECCTTCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=6.4e-23 Score=148.33 Aligned_cols=125 Identities=28% Similarity=0.395 Sum_probs=113.2
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++||||+|+++.+..++++|..+++..+++|+++||.+... .++
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------------------------~~~ 214 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------------------------KTA 214 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------------------------CHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------------------------HHH
Confidence 4789999999999999999999999999999999999987642 145
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
.++.+.+.+...|+++++.+..|++.++|++++++.++||||||+++++++.++++||++++++++++||||++|+...
T Consensus 215 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~~ 293 (294)
T 3loq_A 215 DLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGDD 293 (294)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCTT
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCCC
Confidence 6667777777788999998999999999999999999999999999999999999999999999999999999998653
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.88 E-value=5.2e-22 Score=144.51 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=106.0
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++||||+|+++.+..++++|+.+|+..+++|+++||.+..... + .+ .... ... .+..++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---------~---~~--~~~~-~~~----~~~~~~ 230 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS---------E---WP--GIDW-PAT----QSMAEQ 230 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT---------T---CS--SCCH-HHH----HHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc---------C---CC--cccH-HHH----HHHHHH
Confidence 368999999999999999999999999999999999998764311 0 00 0000 111 111233
Q ss_pred HHHHHHHHhhh--cCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 83 ALDLLDTASRQ--KEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 83 ~l~~~~~~~~~--~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.++.+.+.+.. .++.+++.+..|++.++|+++++ ++||||||+++++++.++++||++++++++++||||++|++
T Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 231 VLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp HHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 34444333332 47888988899999999999998 79999999999999999999999999999999999999975
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.84 E-value=1.4e-20 Score=134.33 Aligned_cols=116 Identities=22% Similarity=0.195 Sum_probs=101.2
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++||||+|+++.+..++++|..++...+++++++|+.+... ..++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~---------------------------------~~~~ 199 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA---------------------------------RAEA 199 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH---------------------------------HHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH---------------------------------HHHH
Confidence 3689999999999999999999999999999999999976520 1134
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.++.+.+.+...|+.+++.+..|++.++|++++++. ||||||+ ++.++++||++++++++++||||++|
T Consensus 200 ~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 200 WALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 556666777777899998888899999999999997 9999998 67788999999999999999999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.37 E-value=0.0092 Score=37.46 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=87.3
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCC-CeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKG-DTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~-~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|.+|||.+..+-.+..+..-...+..... ..+.+| ++..+. ..+.+ ......+..++
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VL--VPa~~~-----------------~a~~~---e~~~a~~~A~~ 58 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLL--VPAVPP-----------------PGWVY---EENEVRRRAEE 58 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEE--EEEECC-----------------CCSCC-----CHHHHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEE--ecCCCC-----------------ccccc---ChHHHHHHHHH
Confidence 47899999888777766665455554443 554333 222210 00111 11112333467
Q ss_pred HHHHHHHHhhhcCCceE-EEEecCChhHHHHHHHhhCC--CCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 83 ALDLLDTASRQKEANIV-AKIYWGDARERLLEAIEDLK--LDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~--~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.++.-...++..|+.++ ..+..++|..++.+...+.+ +|-||+-+..+. .+++|--..+++.=+ ...||+=+
T Consensus 59 ~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 59 EAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPG-LSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTT-TCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCch-HHHHHhccHHHHHHh-cCCCEEEE
Confidence 77777788888999999 99999999999999999999 999999887664 445566677777666 88999855
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=96.35 E-value=0.055 Score=39.16 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=65.7
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCe-EEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDT-LYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~-l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.++|+|+++|...|..++..+..+....+.. +.++|+....... ...
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~--------------------------------s~~ 71 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRES--------------------------------AER 71 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTH--------------------------------HHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcc--------------------------------cHH
Confidence 4689999999999998888887776666778 9999996443100 123
Q ss_pred HHHHHHHHhhhcCCceEEEEec--------C-Ch--------hHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW--------G-DA--------RERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+.+.+...|+++...-.. | ++ ...+.+.+++.+++.|++|.+.
T Consensus 72 ~~~~v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 72 DEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred HHHHHHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 4456677777778877664321 1 11 2355667888999999999763
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.25 E-value=0.038 Score=42.25 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=68.3
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+|+++|...|..++..+..+....+..+.++||...... ......
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg-------------------------------~~s~~~ 66 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG-------------------------------RESEEE 66 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT-------------------------------HHHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc-------------------------------cccHHH
Confidence 4689999999999998888888877767889999999654310 001234
Q ss_pred HHHHHHHhhhcCCceEEEEec--------C-Ch--------hHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW--------G-DA--------RERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.+.+.|...|+++...-.. | ++ ...+.+++++.+++.|++|.+.
T Consensus 67 ~~~v~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 67 MEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred HHHHHHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 566778888888877764332 1 11 3456677888999999999764
No 28
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.25 E-value=0.025 Score=40.24 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcCCceE
Q 031195 20 ALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKEANIV 99 (164)
Q Consensus 20 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 99 (164)
++-.|-.|...+++.+.++.|++.... .+.+++.++++.+.++ +..+
T Consensus 181 mlllAylL~~nW~A~I~L~~vV~de~a------------------------------~~~a~~~l~~Lv~~~R---i~a~ 227 (294)
T 3g40_A 181 ALLIAYKLKSNWKASLSFMTFAPTAIQ------------------------------AQAAENFLQSLAELAR---IPNV 227 (294)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECSSHHH------------------------------HHHHHHHHHHHHHHHT---CCSC
T ss_pred HHHHHHHHhhCcCCeEEEEEecCCHHH------------------------------HHHHHHHHHHHHHHhc---CCce
Confidence 444455555557999999999776421 1112344444444444 4444
Q ss_pred EEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 100 AKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 100 ~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
..++. .+..+|++.+ .++||+++|-.....+. +..+++.......+.++....
T Consensus 228 ~~vv~-~~F~~il~~s--~~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 228 KMQVL-RENPIKSSKL--PFASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSGE 280 (294)
T ss_dssp EEEEE-SSCTTTSSSC--CCCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCSC
T ss_pred EEEec-CchHHHHhhC--cCCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCch
Confidence 33444 4445555555 45999999987665554 468888888888888887654
No 29
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=95.04 E-value=0.23 Score=38.06 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
....||..|++.+...+..|..|++.++.... ..........+.++.+.+.+++.|
T Consensus 50 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~------------------------~~~~r~~Fl~~sL~~L~~~L~~~G 105 (482)
T 2xry_A 50 EDNWALLFSRAIAKEANVPVVVVFCLTDEFLE------------------------AGIRQYEFMLKGLQELEVSLSRKK 105 (482)
T ss_dssp SSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG------------------------SCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHcCCcEEEEEEeChhhhc------------------------cCHHHHHHHHHHHHHHHHHHHHcC
Confidence 35567888887765566789999999875311 000111223466777777888877
Q ss_pred CceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 96 ANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 96 ~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+.+. +..|++.+.|.+.+++.+++.|+........... ....+.+.+++++..+..
T Consensus 106 ~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~-----~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 106 IPSF--FLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQ-----WIEKVISGISIPFFEVDA 161 (482)
T ss_dssp CCEE--EEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHH-----HHHHHHHHCCSCEEEECC
T ss_pred CcEE--EEeCCHHHHHHHHHHHcCCCEEEEecccchhHHH-----HHHHHHHHcCCEEEEEeC
Confidence 7665 4569999999999999999999986543321111 234444445888877754
No 30
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=94.53 E-value=0.3 Score=33.34 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=52.9
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|..++||.|-+.++.....++-.++. ....+.+| +.|+...+..
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~-~~~~~~~I--~~Vis~~~~a--------------------------------- 48 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFS-TEESSVVI--SCVISNNAEA--------------------------------- 48 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTC-CC-CSEEE--EEEEESCTTC---------------------------------
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHH-cCCCCcEE--EEEEeCCcch---------------------------------
Confidence 44577999999999887766665553 11233444 4444433200
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
. ..+.+.+.|+.+...-...-..+++.+..++.++|++|+....
T Consensus 49 -~----~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 49 -R----GLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp -T----HHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred -H----HHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 0 1245667788766432222123789999999999999997654
No 31
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=94.49 E-value=0.62 Score=30.69 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHH---hhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAI---EDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++..+.+++.|+.++..+..- ...+.+.+|+ ++.+++.+|.|..+.+.+. .-+.-.++.||+=|
T Consensus 35 ~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------GvvAa~T~~PVIGV 106 (181)
T 4b4k_A 35 WETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGV 106 (181)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch--------hhHHhcCCCCEEEE
Confidence 4667788888899999999988885 5556666665 4567899999977665544 34556788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 107 Pv~s 110 (181)
T 4b4k_A 107 PVQS 110 (181)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9864
No 32
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=94.43 E-value=0.21 Score=36.27 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=61.2
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.+++|++.+...|..++..+..+....+..+.++|+.....+ .+.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~----------------------------------~et 91 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF----------------------------------QEM 91 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC----------------------------------HHH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC----------------------------------HHH
Confidence 5689999999999998888888876555667888888554321 133
Q ss_pred HHHHHHHhhhcCCceEEEEec-----CC-h-------------hHHHHHHHhhCCCCEEEEeccCC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-----GD-A-------------RERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-----g~-~-------------~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
.+.+.+.+...|+++...-.. |. . .+.+.++++++++|.+++|.+..
T Consensus 92 ~~~v~~~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 92 YRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp HHHHHHHHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 445555666667766543211 21 0 12455667777899999997654
No 33
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=94.16 E-value=0.071 Score=37.38 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCccHHHHHHHHHHhcCCCCC--eEEEEEEecC
Q 031195 13 FSPSSKFALSWAVNNLLDKGD--TLYIIHINPN 43 (164)
Q Consensus 13 ~s~~~~~al~~a~~la~~~~~--~l~ll~v~~~ 43 (164)
.++.+..|++.|.++... +. +++++.+-+.
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~ 66 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK 66 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh
Confidence 345688999999999876 65 8998887653
No 34
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=93.78 E-value=0.074 Score=37.53 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHHhcCCCCC--eEEEEEEec
Q 031195 13 FSPSSKFALSWAVNNLLDKGD--TLYIIHINP 42 (164)
Q Consensus 13 ~s~~~~~al~~a~~la~~~~~--~l~ll~v~~ 42 (164)
.++.+..|++.|.+++...+. ++++|.+-+
T Consensus 35 lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~ 66 (264)
T 1o97_C 35 LNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP 66 (264)
T ss_dssp ECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc
Confidence 456788999999999876666 888888754
No 35
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=93.77 E-value=0.42 Score=31.52 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=62.2
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|++++.|+..+.++.+..-.|.+ .+.+++++- ...-. .+.. ...
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~---T~~A~-----------------~fi~------------~~~ 51 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKS-KFDEVNVIA---STNGR-----------------KFIN------------GEI 51 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEE---CTGGG-----------------GGSC------------HHH
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEE---CcCHH-----------------HHhh------------HHH
Confidence 48999999999999988887777654 577766654 22100 0000 111
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchh---cccchhHHHhhcCCccEEEEe
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRI---ILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~---~~~s~~~~i~~~~~~pVliv~ 157 (164)
+.... + .+... ..+......+.+++ +|++|+..=.-+.+.++ +..+....++...++||+++|
T Consensus 52 ---l~~l~---~-~v~~~--~~~~~~~hi~l~~~--aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 52 ---LKQFC---D-NYYDE--FEDPFLNHVDIANK--HDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp ---HHHHC---S-CEECT--TTCTTCCHHHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred ---HHHhc---C-CEEec--CCCCccccccccch--hCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 11111 1 11110 11122335556666 99999875443333332 334455556777899999998
No 36
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=93.63 E-value=0.63 Score=35.99 Aligned_cols=116 Identities=13% Similarity=0.016 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
....||..|++.|...+..|..|+|.++..... .. .........+.|+.+.+.+++.|
T Consensus 51 ~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~----------------~~------~~~r~~FL~~sL~dL~~~L~~lG 108 (506)
T 3umv_A 51 ADNWALLHAAGLAAASASPLAVAFALFPRPFLL----------------SA------RRRQLGFLLRGLRRLAADAAARH 108 (506)
T ss_dssp TTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG----------------GC------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc----------------CC------CHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788889887776678899999988763110 00 00111223466777777777777
Q ss_pred CceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh--cCCccEEEEeC
Q 031195 96 ANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT--HAPCPVTIVKD 158 (164)
Q Consensus 96 ~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~--~~~~pVliv~~ 158 (164)
+.. .+..|++.+. .+.+++.+++.|+...... .... -......+.++ ..++++..+..
T Consensus 109 ~~L--~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~-~~~r-~rD~~V~~~l~~~~~gi~~~~~~~ 168 (506)
T 3umv_A 109 LPF--FLFTGGPAEI-PALVQRLGASTLVADFSPL-RPVR-EALDAVVGDLRREAPGVAVHQVDA 168 (506)
T ss_dssp CCE--EEESSCTTHH-HHHHHHTTCSEEEECCCCC-HHHH-HHHHHHHHHHHHHCTTSEEEEECC
T ss_pred Cce--EEEecChHHH-HHHHHhcCCCEEEeccChh-HHHH-HHHHHHHHHHhhccCCeEEEEeCC
Confidence 665 4667999999 9999999999999732221 1110 11122233333 56788776654
No 37
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=93.63 E-value=0.064 Score=37.66 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHhcCCCCC--eEEEEEEecC
Q 031195 15 PSSKFALSWAVNNLLDKGD--TLYIIHINPN 43 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~--~l~ll~v~~~ 43 (164)
+.+..|++.|.++... +. +++++.+-+.
T Consensus 40 p~d~~Ale~A~~Lke~-g~~~~V~av~~G~~ 69 (255)
T 1efv_B 40 PFCEIAVEEAVRLKEK-KLVKEVIAVSCGPA 69 (255)
T ss_dssp HHHHHHHHHHHHHHHT-TSCSEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEEeCCh
Confidence 4578999999999766 55 8998888654
No 38
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=93.55 E-value=0.74 Score=35.89 Aligned_cols=129 Identities=10% Similarity=0.024 Sum_probs=80.4
Q ss_pred eEEEEe--CCCccHHHHHHHHHHhcCC--CCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 6 KIGVAL--DFSPSSKFALSWAVNNLLD--KGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 6 ~iLv~v--d~s~~~~~al~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.+|+=+ |.--....||..|++.+.. .+..|..|++.++..... .. ..........
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~---------------~~------~~~~r~~Fl~ 88 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDW---------------MQ------VGANRWRFLQ 88 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGC---------------TT------SCHHHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcc---------------cC------CCHHHHHHHH
Confidence 335544 4444566788888876644 466799999998864210 00 0001112235
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.++.+.+.++..|+.+. +..|++.+.|.+.+++.+++.|+...... ... ..........+...++++..+...
T Consensus 89 ~sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~~~-p~~-~~rd~~v~~~~~~~gi~~~~~~~~ 162 (543)
T 2wq7_A 89 QTLEDLDNQLRKLNSRLF--VVRGKPAEVFPRIFKSWRVEMLTFETDIE-PYS-VTRDAAVQKLAKAEGVRVETHCSH 162 (543)
T ss_dssp HHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHTTEEEEEEECCCS-HHH-HHHHHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecCcC-HHH-HHHHHHHHHHHHHcCCEEEEecCC
Confidence 667777778887777765 45699999999999999999988864322 111 111223455566667888776654
No 39
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=93.46 E-value=1.2 Score=30.29 Aligned_cols=85 Identities=7% Similarity=-0.008 Sum_probs=54.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
|+||.|-++++..+..++-.+.+ ....+++|.+|-- ..+.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~-~~~l~~eI~~Vis--n~~~------------------------------------- 41 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQK-AGQLPCEVALLIT--DKPG------------------------------------- 41 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHH-TTCCSSEEEEEEE--SCSS-------------------------------------
T ss_pred CCEEEEEEeCCchHHHHHHHHHH-cCCCCcEEEEEEE--CCCC-------------------------------------
Confidence 57899999999888777777765 2334566665543 3210
Q ss_pred HHHHHHHhhhcCCceEEEEec--CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW--GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
....+.+.+.|+.+...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 42 -a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 42 -AKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp -SHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred -cHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 12456667777876542211 12 14678889999999999997654
No 40
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=93.34 E-value=0.38 Score=32.85 Aligned_cols=41 Identities=10% Similarity=-0.083 Sum_probs=32.6
Q ss_pred CCceEEEEeCCC-----ccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 3 GDRKIGVALDFS-----PSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 3 ~~~~iLv~vd~s-----~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.|++|||-++-. +.+..++..|.+|+...+.++++|-+-+.
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~ 47 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTG 47 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESC
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 478899988753 45889999999999888888988887654
No 41
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=93.22 E-value=1.1 Score=29.24 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhh---CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIED---LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~---~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++....++..|++++..+..- ...+.+.+++++ .+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 24 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 95 (170)
T 1xmp_A 24 WETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGV 95 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEe
Confidence 4667778888888999999888874 666777777654 45888888877665444 44566788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 96 P~~~ 99 (170)
T 1xmp_A 96 PVQS 99 (170)
T ss_dssp EECC
T ss_pred eCCC
Confidence 9754
No 42
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=93.03 E-value=0.56 Score=35.28 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|...++|++++.|.-.|.-++.++.+. +..++.+|+...
T Consensus 2 ~~~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 2 MSSKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp ---CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCCCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 445679999999998888777777652 678999988654
No 43
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=92.91 E-value=0.96 Score=34.48 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 2 AGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
...++|+|++.|.-.|--++.++.+ .+..|+.+|+.-.
T Consensus 8 ~~~~KVvVA~SGGlDSSvll~~L~e----~G~eViavtvd~G 45 (455)
T 1k92_A 8 PVGQRIGIAFSGGLDTSAALLWMRQ----KGAVPYAYTANLG 45 (455)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred cCCCeEEEEEcChHHHHHHHHHHHH----cCCEEEEEEEEcC
Confidence 3567999999999888888887765 2789999998654
No 44
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=92.91 E-value=1.2 Score=28.74 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....++....++..|++++..+..- ...+.+.+++++...+.+|.+....+.+. .-+.-.+++||+=||.
T Consensus 12 ~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp--------gvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 12 LKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP--------GVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH--------HHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH--------HHHHhccCCCEEEecC
Confidence 4666778888888999999988874 77888899988766688888877665444 4456678899999987
No 45
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=92.73 E-value=1.3 Score=28.91 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHH---HhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEA---IEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++..+.++..|+.++..+..- ...+.+.++ ++..+++.+|.+....+.+. .-+.-.+++||+-|
T Consensus 25 ~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------gvvA~~t~~PVIgV 96 (173)
T 4grd_A 25 WDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP--------GMLAAKTTVPVLGV 96 (173)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH--------HHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch--------hhheecCCCCEEEE
Confidence 4667778888889999999888774 555555555 44578899998877665544 34556788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 97 Pv~~ 100 (173)
T 4grd_A 97 PVAS 100 (173)
T ss_dssp EECC
T ss_pred EcCC
Confidence 9543
No 46
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=92.45 E-value=1.5 Score=28.66 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHH---hhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAI---EDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++....++..|++++..+..- ...+.+.+++ ++.+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 19 ~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 90 (169)
T 3trh_A 19 LSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA--------GTIAAHTLKPVIGV 90 (169)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH--------HHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhcCCCCEEEe
Confidence 4667788888889999999888774 5555666664 4578898888877665444 44566788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 91 P~~~ 94 (169)
T 3trh_A 91 PMAG 94 (169)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9764
No 47
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=92.26 E-value=1.6 Score=28.63 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHh---hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIE---DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++....++..|++++..+..- ...+.+.++++ +.+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 25 ~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 96 (174)
T 3kuu_A 25 WATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP--------GMLAAKTLVPVLGV 96 (174)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH--------HHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhccCCCEEEe
Confidence 4667788888899999999888874 56666666654 467898888877665444 44566788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 97 P~~~ 100 (174)
T 3kuu_A 97 PVQS 100 (174)
T ss_dssp EECC
T ss_pred eCCC
Confidence 9754
No 48
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=92.05 E-value=1.7 Score=28.65 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhh---CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIED---LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~---~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++....++..|++++..+..- ...+.+.+++++ .+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 34 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 105 (182)
T 1u11_A 34 WETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP--------GMCAAWTRLPVLGV 105 (182)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH--------HHHHhccCCCEEEe
Confidence 4667788888889999999888874 666777777654 45888888877665444 44556788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 106 P~~~ 109 (182)
T 1u11_A 106 PVES 109 (182)
T ss_dssp EECC
T ss_pred eCCC
Confidence 9754
No 49
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=91.73 E-value=2.4 Score=32.50 Aligned_cols=132 Identities=6% Similarity=-0.048 Sum_probs=76.5
Q ss_pred CceEEEEe--CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 4 DRKIGVAL--DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 4 ~~~iLv~v--d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
.+.+|+=+ |.--....||..|++. +..+..|++.++...... . . ..... .........
T Consensus 5 ~~~~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~-------~--~-~~~~~------~~~r~~Fl~ 64 (489)
T 1np7_A 5 PPTVLVWFRNDLRLHDHEPLHRALKS----GLAITAVYCYDPRQFAQT-------H--Q-GFAKT------GPWRSNFLQ 64 (489)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHT----TSEEEEEEEECGGGGSBC-------T--T-SCBSS------CHHHHHHHH
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHhc----CCCEEEEEEECchhhccc-------c--c-ccCCC------CHHHHHHHH
Confidence 34455554 4444566778877752 457889999887532100 0 0 00000 001112235
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.++.+.+.+++.|+.+. +..|++.+.|.+.+++.+++.|+....... .... ......+.+...++++..+...
T Consensus 65 ~sL~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~-~~~~-rd~~v~~~l~~~gi~~~~~~~~ 138 (489)
T 1np7_A 65 QSVQNLAESLQKVGNKLL--VTTGLPEQVIPQIAKQINAKTIYYHREVTQ-EELD-VERNLVKQLTILGIEAKGYWGS 138 (489)
T ss_dssp HHHHHHHHHHHHTTCCEE--EEESCHHHHHHHHHHHTTEEEEEEECCCSH-HHHH-HHHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHHCCCcEE--EEECCHHHHHHHHHHHcCCCEEEEecccCH-HHHH-HHHHHHHHHHhcCCeEEEecCC
Confidence 667777778887777665 456999999999999999998888743322 2111 1222344455556777766543
No 50
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=91.65 E-value=1.2 Score=33.64 Aligned_cols=92 Identities=17% Similarity=0.102 Sum_probs=61.0
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCC-CCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLD-KGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~-~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.++|+|+++|...|..++..+..+... .+..+.++||...... ....
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~--------------------------------~s~~ 60 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA--------------------------------NADA 60 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS--------------------------------SHHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc--------------------------------ccHH
Confidence 578999999999999888888887766 7789999999544310 0123
Q ss_pred HHHHHHHHhhhcCCceEEEEec----C-Ch--------hHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW----G-DA--------RERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~----g-~~--------~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+.+.|...|+++...-.. | ++ ...+.+.++ +++.|++|.+.
T Consensus 61 ~~~~v~~~~~~lgi~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~ 118 (433)
T 1ni5_A 61 WVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHL 118 (433)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCH
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccc
Confidence 4456777788888877654322 2 11 122223333 48899998764
No 51
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=91.65 E-value=0.97 Score=30.31 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=27.4
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
||.+++++|++.|...|..++..+.+ .+..+.++|+...
T Consensus 3 ~m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 3 AMKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred cccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 56788999999998888766654433 4678888988644
No 52
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=91.54 E-value=0.38 Score=32.65 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
|+..++|++++.|+-.+..+.+..-.|.+. +.+++++-
T Consensus 1 m~~~k~IllgvTGaiaa~k~~~ll~~L~~~-g~eV~vv~ 38 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQYGLRLLDCLVQE-EREVHFLI 38 (209)
T ss_dssp CCSCSEEEEEECSSSCHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 888899999999999999988888877654 77776654
No 53
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=91.31 E-value=2.1 Score=28.24 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHh---hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIE---DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+++...++..|++++..+..- ...+.+.++++ +.+++.+|.+....+.+. .-+.-.++.||+-|
T Consensus 26 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 97 (183)
T 1o4v_A 26 LPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--------GMVASITHLPVIGV 97 (183)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH--------HHHHhccCCCEEEe
Confidence 4667778888888999999988874 55666666655 456898888877665444 34556788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 98 P~~~ 101 (183)
T 1o4v_A 98 PVKT 101 (183)
T ss_dssp EECC
T ss_pred eCCC
Confidence 9754
No 54
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=91.18 E-value=2.1 Score=27.85 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhh---CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIED---LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~---~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++..+.++..|+.++..+..- ...+.+.+++++ .+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 18 ~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 89 (166)
T 3oow_A 18 WSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP--------GMVAAKTTLPVLGV 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH--------HHHHhccCCCEEEe
Confidence 4667788888889999999888774 666677777654 46899998877665444 44566788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 90 P~~~ 93 (166)
T 3oow_A 90 PVKS 93 (166)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 9754
No 55
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=91.14 E-value=1.3 Score=29.07 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHH---HhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEA---IEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++....++..|++++..+..- ...+.+.++ +++.+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 20 ~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 91 (174)
T 3lp6_A 20 WPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP--------GMVAAATPLPVIGV 91 (174)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH--------HHHHhccCCCEEEe
Confidence 4667788888889999999888774 555555555 45567898888877665444 44556788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 92 P~~~ 95 (174)
T 3lp6_A 92 PVPL 95 (174)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8653
No 56
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=91.07 E-value=2.1 Score=27.74 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHh---hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIE---DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....++....++..|++++..+..- ...+.+.++++ +.+++.+|.+....+.+. .-+.-.++.||+=|
T Consensus 16 ~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgV 87 (163)
T 3ors_A 16 WKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP--------GMVASLTTLPVIGV 87 (163)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEe
Confidence 4667788888899999999888774 56666666654 456898888877665444 44556788999999
Q ss_pred eCCC
Q 031195 157 KDPS 160 (164)
Q Consensus 157 ~~~~ 160 (164)
|...
T Consensus 88 P~~~ 91 (163)
T 3ors_A 88 PIET 91 (163)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8654
No 57
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=90.95 E-value=2.5 Score=28.39 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=56.9
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
.+|+|+++|...|..++..+.++. .++.++|+...... .+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~----------------------------------~e~~ 86 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF----------------------------------PETY 86 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC----------------------------------HHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC----------------------------------HHHH
Confidence 489999999999998888777753 46788887654321 1234
Q ss_pred HHHHHHhhhcCCceEEEEecCCh---------------h-----------HHHHHHHhhCCCCEEEEeccCC
Q 031195 85 DLLDTASRQKEANIVAKIYWGDA---------------R-----------ERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~---------------~-----------~~I~~~a~~~~~dlivlg~~~~ 130 (164)
+.+.+.+...|+++...-..-.. . ..+.+++++.+++.+++|.+..
T Consensus 87 ~~v~~~~~~~gi~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~d 158 (215)
T 1sur_A 87 RFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRRE 158 (215)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTT
T ss_pred HHHHHHHHHhCCcEEEEeCCCCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehh
Confidence 55666677777776654321110 0 1234566777888899997653
No 58
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=90.49 E-value=2.4 Score=27.39 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhh---C-CCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIED---L-KLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~---~-~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
....++....++..|++++..+..- ...+.+.+++++ . +++.+|.+....+.+. .-+.-.++.||+=
T Consensus 15 ~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIg 86 (159)
T 3rg8_A 15 MGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS--------GFVDGFVKGATIA 86 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH--------HHHHHHSSSCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH--------HHHHhccCCCEEE
Confidence 4667788888889999999888774 566666666543 2 5899999877665444 4455678899999
Q ss_pred EeCCC
Q 031195 156 VKDPS 160 (164)
Q Consensus 156 v~~~~ 160 (164)
||...
T Consensus 87 VP~~~ 91 (159)
T 3rg8_A 87 CPPPS 91 (159)
T ss_dssp CCCCC
T ss_pred eeCCC
Confidence 99654
No 59
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=90.46 E-value=0.84 Score=26.94 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=36.7
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc----ccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG----TVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~----~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
...+.|.+++++++++.||+|-+... +......-.+++.+-.. +.||..+-++-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERl 95 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCC
Confidence 34678888899999999999955322 22222233456777777 89999887654
No 60
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=90.43 E-value=2.1 Score=29.02 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=52.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.+||.|-+.++.....++-.++. ....+.+|.+| +...+.. .
T Consensus 7 ~~ri~vl~SG~gsnl~all~~~~-~~~l~~~I~~V--isn~~~a----------------------------------~- 48 (209)
T 4ds3_A 7 RNRVVIFISGGGSNMEALIRAAQ-APGFPAEIVAV--FSDKAEA----------------------------------G- 48 (209)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHT-STTCSEEEEEE--EESCTTC----------------------------------T-
T ss_pred CccEEEEEECCcHHHHHHHHHHH-cCCCCcEEEEE--EECCccc----------------------------------H-
Confidence 45899999999887766666653 22234455444 4332100 0
Q ss_pred HHHHHHHhhhcCCceEEEEec--CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW--GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+++.|+.+...-.. .+ ..+++.+..++.++|++|+....
T Consensus 49 ---~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 49 ---GLAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp ---HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred ---HHHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 025566778877653221 12 24688899999999999997654
No 61
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=90.27 E-value=2 Score=32.96 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=72.4
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....||..|++.+ ..|..|++.++..... . . ..........+.++.+.+.+
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~-------------~--~------~~~~r~~fl~~sL~~L~~~L 66 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQS-------------A--D------MAPARVAYLQGCLQELQQRY 66 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTC-------------T--T------CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcC-------------C--C------CCHHHHHHHHHHHHHHHHHH
Confidence 44445567788777642 3688999988742110 0 0 00011122346677777777
Q ss_pred hhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 92 RQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 92 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
++.|+.+. +..|++.+.|.+.+++.+++.|+....-.. ... -......+.+...++++..+..
T Consensus 67 ~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p-~~~-~rd~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 67 QQAGSRLL--LLQGDPQHLIPQLAQQLQAEAVYWNQDIEP-YGR-DRDGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HHHTSCEE--EEESCHHHHHHHHHHHTTCSEEEEECCCSH-HHH-HHHHHHHHHHHHTTCEEEEECC
T ss_pred HHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEeccCCh-hHH-HHHHHHHHHHHHcCcEEEEecC
Confidence 77777665 456999999999999999999988543222 111 1122344555666788877654
No 62
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=89.87 E-value=3.1 Score=27.78 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..++|+|++.|.-.|..++..+.+. +.++..+|+...
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 3578999999988888777766553 367888888654
No 63
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=89.31 E-value=4.1 Score=28.39 Aligned_cols=40 Identities=5% Similarity=-0.117 Sum_probs=31.1
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
+.+++|++.|...|..++..+.++... +..+.++|+....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 457999999999998888888877654 4578888885544
No 64
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=89.28 E-value=0.73 Score=35.90 Aligned_cols=120 Identities=10% Similarity=0.074 Sum_probs=70.9
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....||..|++.+. .+..|..|+|.++..... .... ........+.++.+.+.+
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~---------------~~~~------~~r~~Fl~~sL~~L~~~L 70 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGT---------------KNVG------YNRMRFLLDSLQDIDDQL 70 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCS---------------TTCC------HHHHHHHHHHHHHHHHHG
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhcc---------------CCCC------HHHHHHHHHHHHHHHHHH
Confidence 333445567777776553 455899999998764210 0000 011122346667777777
Q ss_pred hhc---CCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 92 RQK---EANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 92 ~~~---~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
++. |+... +..|++.+.|.+.+++.+++.|+.... .+.... --.....+.++..++++..+.
T Consensus 71 ~~~~~~G~~L~--v~~G~~~~vl~~L~~~~~a~~V~~n~~-~~~~~~-~RD~~v~~~l~~~gi~~~~~~ 135 (538)
T 3tvs_A 71 QAATDGRGRLL--VFEGEPAYIFRRLHEQVRLHRICIEQD-CEPIWN-ERDESIRSLCRELNIDFVEKV 135 (538)
T ss_dssp GGSCSSSSCCE--EEESCHHHHHHHHHHHHCEEEECEECC-CCGGGH-HHHHHHHHHHHHSSCCCCEEC
T ss_pred HHhhcCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEccC-CCHHHH-HHHHHHHHHHHhCCceEEEec
Confidence 776 66654 567999999999999999999887532 222211 112233445555566665544
No 65
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=89.15 E-value=3.9 Score=30.26 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=57.9
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+|+++|.-.|.-++..+.+ .+-.+..+|+....... ..... .....
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~----------------~~~~c----------~~~~d 58 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTD----------------ENGVC----------TATED 58 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC--------------------C----------HHHHH
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCccc----------------ccccC----------CCHHH
Confidence 45899999998887766655544 37789999886543100 00000 00223
Q ss_pred HHHHHHHhhhcCCceEEEEec-----------------CC------------hhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-----------------GD------------ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-----------------g~------------~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.+.+.++..|+++...-.. |. -...+.++|++.++|.|+.|.+.
T Consensus 59 ~~~a~~va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 59 YKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred HHHHHHHHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 455666666667766543321 10 13456788999999999999753
No 66
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=89.07 E-value=3.9 Score=27.79 Aligned_cols=84 Identities=10% Similarity=-0.109 Sum_probs=52.4
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
++.||.|-+.++..+..++-.+.. ...+.++.+ |+..... .
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~--Vis~~~a-----------------------------------~ 51 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYPARVVA--VGVDREC-----------------------------------R 51 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEE--EEESSCC-----------------------------------H
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEE--EEeCCch-----------------------------------H
Confidence 356899999999887766665552 223445544 4444320 1
Q ss_pred HHHHHHHHhhhcCCceEEEEec--CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW--GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+.+.|+.+...-.. .+ ..+++.+..++.++|++|+....
T Consensus 52 ----~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 52 ----AAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp ----HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred ----HHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 245666778876654211 11 24678888999999999997654
No 67
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=88.58 E-value=4.3 Score=27.60 Aligned_cols=87 Identities=13% Similarity=-0.037 Sum_probs=52.6
Q ss_pred CCC-CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccc
Q 031195 1 MAG-DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKT 79 (164)
Q Consensus 1 m~~-~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
|+. ..||.|-+.++.....++-.++.- . .+.+|.+ |+...+..
T Consensus 1 ~~~~~~riavl~SG~Gsnl~all~~~~~-~-~~~eI~~--Vis~~~~a-------------------------------- 44 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGTNLQAIIGAIQK-G-LAIEIRA--VISNRADA-------------------------------- 44 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHHHT-T-CSEEEEE--EEESCTTC--------------------------------
T ss_pred CCCCCcEEEEEEeCCcHHHHHHHHHHHc-C-CCCEEEE--EEeCCcch--------------------------------
Confidence 553 458999999998887777776652 2 4445444 44433200
Q ss_pred hHHHHHHHHHHhhhcCCceEEEEec--CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 80 DIDALDLLDTASRQKEANIVAKIYW--GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
. ..+.+.+.|+.+...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 45 --~----~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 45 --Y----GLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp --H----HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred --H----HHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 1 125566678876642221 11 24678999999999999997554
No 68
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=88.52 E-value=5.3 Score=28.66 Aligned_cols=84 Identities=10% Similarity=-0.016 Sum_probs=53.0
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..+||.|-+.++..+..++-.+.+ ....++.+.+|- ...+ .
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~-~g~l~~~I~~Vi--sn~~------------------------------------~ 144 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWH-SDELDCDIACVI--SNHQ------------------------------------D 144 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHH-TTCSCSEEEEEE--ESSS------------------------------------T
T ss_pred CCcEEEEEEeCCchhHHHHHHHHH-CCCCCcEEEEEE--ECcH------------------------------------H
Confidence 356899999998887777766654 233455555443 3321 0
Q ss_pred HHHHHHHHhhhcCCceEEEEec-CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW-GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~-g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+++.|+++...... .+ ..+++.+..++.++|++|+....
T Consensus 145 ----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 ----LRSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ----THHHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 113356778877653222 11 23578999999999999997654
No 69
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=87.96 E-value=1.7 Score=33.81 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCCCceEEEEe--CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhccc
Q 031195 1 MAGDRKIGVAL--DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVK 78 (164)
Q Consensus 1 m~~~~~iLv~v--d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
|++.+.+|+=. |.--.+..||..|+. .+..|..|+|.++..... ...+...... ........
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~-------~~~~~~~g~~-----~~g~~r~~ 64 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMES-------DPSAFSPGSS-----RAGVNRIR 64 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSC-------CTTSSSSBCS-----SCBHHHHH
T ss_pred CCCCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcc-------cccccccccc-----cCCHHHHH
Confidence 55444454444 555556677877775 356899999998643210 0000000000 00011112
Q ss_pred chHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 79 TDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...+.++.+.+.+++.|.... +..|++.+.|.+.+++.+++.|+....
T Consensus 65 Fl~~sL~~L~~~L~~~G~~L~--v~~G~~~~vl~~L~~~~~~~~V~~n~~ 112 (537)
T 3fy4_A 65 FLLESLKDLDSSLKKLGSRLL--VFKGEPGEVLVRCLQEWKVKRLCFEYD 112 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE--EEESCHHHHHHHHHTTSCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHcCCceE--EEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 335667777777777776654 566999999999999999999988643
No 70
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=87.88 E-value=5.8 Score=28.31 Aligned_cols=121 Identities=8% Similarity=0.030 Sum_probs=77.0
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHH
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALD 85 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (164)
++||++..+...-..+++|..+.. ..+-+++++|.+..... .....++
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~~~-------------------------------~l~~ql~ 69 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTDKE-------------------------------NLLSQLP 69 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---CTT-------------------------------CHHHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCCcc-------------------------------HHHHHHH
Confidence 689999877777788888888754 45578888886554210 0011147
Q ss_pred HHHHHhhhcCCceEEEEec-CChhHHHHHHHhh-----CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 86 LLDTASRQKEANIVAKIYW-GDARERLLEAIED-----LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~-----~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+.+.+++.++...+.++. .++...+....+. ..+..|+||.+....-+. -+..+..+ +.+...-|++++.+
T Consensus 70 ~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~-~y~~~i~~-~~~~~~nVlil~~~ 147 (294)
T 3g40_A 70 SISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDE-EIREIIRK-ASMYRMGVLLFSKH 147 (294)
T ss_dssp HHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHH-HHHHHHHH-HHHTTCEEEEEECC
T ss_pred HHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhH-HHHHHHHH-HHHhCceEEEEecC
Confidence 7788999999988887777 4787777776555 467899999775543322 23333333 34568999999754
Q ss_pred C
Q 031195 160 S 160 (164)
Q Consensus 160 ~ 160 (164)
+
T Consensus 148 ~ 148 (294)
T 3g40_A 148 P 148 (294)
T ss_dssp T
T ss_pred C
Confidence 4
No 71
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=87.85 E-value=2.8 Score=30.11 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=58.9
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCC------------------CCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLD------------------KGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEF 66 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~------------------~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (164)
.+|+|++.|...|.-++..+.+.... .+..+.++|+.....+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------------------- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------------------- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC--------------------
Confidence 47999999998888777777664211 1456888888654332
Q ss_pred cchhhhHhhcccchHHHHHHHHHHhhhcCCceEEEEec----CChhHHHHHHHhh-CCCCEEEEeccCCc
Q 031195 67 REPETMEKYNVKTDIDALDLLDTASRQKEANIVAKIYW----GDARERLLEAIED-LKLDSLVMGSRGLG 131 (164)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----g~~~~~I~~~a~~-~~~dlivlg~~~~~ 131 (164)
.+..+.+.+.+.+.|+++...... ....+.+.++++. ...+.+++|.+..-
T Consensus 114 --------------pet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 114 --------------PTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp --------------HHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred --------------HHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 244445555566667665432211 2456677777776 36889999977544
No 72
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=87.30 E-value=2.9 Score=24.29 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIED 117 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~ 117 (164)
+..++.|.+..++.|.++.+..--++..+.+-+.+++
T Consensus 87 qnrleefsrevrrrgfevrtvtspddfkkslerlire 123 (134)
T 2l69_A 87 QNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHH
Confidence 6777888888888888877755556677776666665
No 73
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=86.79 E-value=0.99 Score=26.28 Aligned_cols=69 Identities=7% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
++.+.+|.+.....|..+.+ ++. ....+.|-+..+.+|+.++|+-...+.+... +-..++.....|||+
T Consensus 12 eetlrkfkdiikkngfkvrt-vrspqelkdsieelvkkynativvvvvddkewaek------airfvkslgaqvlii 81 (134)
T 2l69_A 12 EETLRKFKDIIKKNGFKVRT-VRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEK------AIRFVKSLGAQVLII 81 (134)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-ECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHH------HHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHHHHhcCceEEE-ecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHH------HHHHHHhcCCeEEEE
Confidence 56778888888888877776 333 3567778888888888888887665543322 334445555555544
No 74
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=86.55 E-value=7 Score=27.88 Aligned_cols=83 Identities=10% Similarity=-0.021 Sum_probs=53.0
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.+||.|-+.++..+..++-.+.+- ...++.+.+| +...+.
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~V--isn~~~------------------------------------- 134 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGI--VSNHPD------------------------------------- 134 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEE--EESSST-------------------------------------
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEE--EeCcHH-------------------------------------
Confidence 568999999998887777776653 3345555544 333320
Q ss_pred HHHHHHHhhhcCCceEEEEec-CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+...+++.|+++...... .+ ..+++.+..++.++|++|+....
T Consensus 135 ---~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 135 ---FAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ---THHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ---HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 012366678877653222 12 13578889999999999997654
No 75
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=86.21 E-value=1.2 Score=26.83 Aligned_cols=66 Identities=8% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
-..+++++.+.+.|++++..... +.. -+...+ +|++++|..-+..+.. .+......++||.++++.
T Consensus 21 llv~km~~~a~~~gi~v~i~a~~~~~~----~~~~~~--~DvvLLgPQV~y~~~~------ik~~~~~~~ipV~vI~~~ 87 (108)
T 3nbm_A 21 QLANAINEGANLTEVRVIANSGAYGAH----YDIMGV--YDLIILAPQVRSYYRE------MKVDAERLGIQIVATRGM 87 (108)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTSC----TTTGGG--CSEEEECGGGGGGHHH------HHHHHTTTTCEEEECCHH
T ss_pred HHHHHHHHHHHHCCCceEEEEcchHHH----HhhccC--CCEEEEChHHHHHHHH------HHHHhhhcCCcEEEeCHH
Confidence 34466777777788887765432 332 223344 9999999765544443 355666778999998864
No 76
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=85.11 E-value=7.7 Score=29.88 Aligned_cols=35 Identities=9% Similarity=0.044 Sum_probs=27.6
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++++++.|.-.|.-++..+.+. +.+++++|+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCC
Confidence 68999999988888777666654 688999998543
No 77
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=85.00 E-value=8.4 Score=27.38 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=51.5
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.+||.|-+.++..+..++-.+.+ ....++.+.+|- ...+.
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~-~g~l~~~i~~Vi--sn~~~------------------------------------- 129 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQR-IGQLGMDVVAVV--SNHPD------------------------------------- 129 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHH-TTSSCCEEEEEE--ESSST-------------------------------------
T ss_pred CcEEEEEEeCCCCCHHHHHHHHH-CCCCCcEEEEEE--eCcHH-------------------------------------
Confidence 46888999988877777766654 233455555443 33310
Q ss_pred HHHHHHHhhhcCCceEEEEec-CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+...+++.|+++...... .+ ..+++.+..++.++|++|+....
T Consensus 130 ---~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 130 ---LEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ---THHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ---HHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 112356678877653222 12 23578889999999999997654
No 78
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=84.75 E-value=7.2 Score=29.29 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=67.8
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....|+..|++. + .|..|++.++.... . . ........+.++.+.+.+
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~-----------------~--~-----~~r~~fl~~sL~~l~~~L 61 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNNLK-----------------T--T-----PRRRAWFLENVRALREAY 61 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHHHS-----------------S--C-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCcccc-----------------C--C-----HHHHHHHHHHHHHHHHHH
Confidence 4444456677777652 2 78899988764210 0 0 001122346677777777
Q ss_pred hhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 92 RQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 92 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++.|+.+. +..|++.+.|.+.+++.+++.|+........ .... -..|-..+++++..+...
T Consensus 62 ~~~g~~l~--~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~-~~~r----d~~v~~~l~i~~~~~~~~ 122 (420)
T 2j07_A 62 RARGGALW--VLEGLPWEKVPEAARRLKAKAVYALTSHTPY-GRYR----DGRVREALPVPLHLLPAP 122 (420)
T ss_dssp HHTTCCEE--EEESCHHHHHHHHHHHTTCSEEEEECCCSHH-HHHH----HHHHHHHCSSCEEEECCC
T ss_pred HHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecccChh-HHHH----HHHHHHHcCCeEEEeCCC
Confidence 77777665 4569999999999999999999886432221 1111 122323337777776543
No 79
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=84.50 E-value=10 Score=28.05 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=58.5
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+|++++.-.|.-++..+.+ .+-.+..+|+........ .... .....
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~--------------------~~~~------~s~~d 66 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEEDDG--------------------EEYC------TAAAD 66 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCCSH--------------------HHHH------HHHHH
T ss_pred CCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCccccc--------------------cCCC------CCHHH
Confidence 56899999999888766655443 478899999864321000 0000 01233
Q ss_pred HHHHHHHhhhcCCceEEEEec-----------------CC------------hhHHHHHHHhh-CCCCEEEEeccC
Q 031195 84 LDLLDTASRQKEANIVAKIYW-----------------GD------------ARERLLEAIED-LKLDSLVMGSRG 129 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~-----------------g~------------~~~~I~~~a~~-~~~dlivlg~~~ 129 (164)
.+.+++.++..|+++...-.. |. -...+.++|.+ .++|.|+.|.+.
T Consensus 67 ~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 67 LADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp HHHHHHHHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred HHHHHHHHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 456666677777766654321 10 12456677888 999999999654
No 80
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=84.45 E-value=1.4 Score=29.12 Aligned_cols=36 Identities=14% Similarity=-0.065 Sum_probs=29.0
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
++++|++++.|+....++.+....|.+ .+..++++-
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 36 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILF 36 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 358999999999999998888888754 477776665
No 81
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=84.42 E-value=8.1 Score=27.91 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=39.3
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC---CcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG---LGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~---~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.|++++... ++....++ + ++|.+++|..+ .|..-.........-+.++.++|++|+=+
T Consensus 165 a~~L~~~gI~vtli~--Dsa~~~~m---~--~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 165 AKALCHLNVPVTVVL--DAAVGYIM---E--KADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp HHHHHTTTCCEEEEC--GGGHHHHG---G--GCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEEe--hhHHHHHH---H--hCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEec
Confidence 445556788887543 33333333 3 49999999876 33333333333344567778899999844
No 82
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=83.90 E-value=4 Score=30.54 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=27.8
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
++|++++.|.-.|.-++.++.+. ++..++++|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 47999999988888777776543 4678999998654
No 83
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=83.87 E-value=3.1 Score=32.29 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=27.1
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++++++.|.-.|.-++..+.+. .+.+++++|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccC
Confidence 68999999988887666665543 3578999998543
No 84
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=83.77 E-value=11 Score=28.21 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=27.8
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
..+++|++.|.-.|.-++..+.+ .+..+..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 56899999999888877766654 378899999864
No 85
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=83.67 E-value=11 Score=29.00 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=72.3
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....||..|++. + .+..|+|.++..... .. . . .. ......+.++.+.+.+
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~-----------~~----~-~--~~---~~~fl~~sL~~L~~~L 74 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGH-----------YH----P-G--RV---SRWWLKNSLAQLDSSL 74 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTT-----------CC----C-C--HH---HHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhccc-----------CC----c-c--hH---HHHHHHHHHHHHHHHH
Confidence 4444566788888764 2 577888888753210 00 0 0 00 0112357777888888
Q ss_pred hhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 92 RQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 92 ~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++.|+.+. +.. |++.+.|.+.+++.+++.|+..... ..... -........+...++++..+...
T Consensus 75 ~~~G~~L~--v~~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~~-~rd~~v~~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 75 RSLGTCLI--TKRSTDSVASLLDVVKSTGASQIFFNHLY-DPLSL-VRDHRAKDVLTAQGIAVRSFNAD 139 (509)
T ss_dssp HHTTCCEE--EEECSCHHHHHHHHHHHHTCCEEEEECCC-SHHHH-HHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHCCCeEE--EEeCCCHHHHHHHHHHHcCCCEEEEeccc-CHHHH-HHHHHHHHHHHHcCcEEEEECCC
Confidence 88887765 444 6999999999999999999886422 21111 11223355566678888777653
No 86
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=83.31 E-value=3.5 Score=29.46 Aligned_cols=105 Identities=7% Similarity=-0.087 Sum_probs=59.0
Q ss_pred ceEEEEeCCCcc---HHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchH
Q 031195 5 RKIGVALDFSPS---SKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDI 81 (164)
Q Consensus 5 ~~iLv~vd~s~~---~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
+--|+.+.+.+. ....+++.++++...+.+|.++- ..... . .
T Consensus 26 ~g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~Ip---tAs~~--------------------~------------~ 70 (291)
T 3en0_A 26 QPAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIP---SASRE--------------------P------------L 70 (291)
T ss_dssp SCCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEEC---TTCSS--------------------H------------H
T ss_pred CceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEe---CCCCC--------------------h------------H
Confidence 445667776653 45789999999876555655542 22100 0 1
Q ss_pred HHHHHHHHHhhhcCC-ceEEEEec---CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHh
Q 031195 82 DALDLLDTASRQKEA-NIVAKIYW---GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVM 146 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~ 146 (164)
...+.+.+.+.+.|. .++..... ......+.+..++ +|.|+++-.....+...+.+.-...++
T Consensus 71 ~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~--ad~I~v~GGnt~~l~~~l~~t~l~~~L 137 (291)
T 3en0_A 71 LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQ--CTGIFMTGGDQLRLCGLLADTPLMDRI 137 (291)
T ss_dssp HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHH--CSEEEECCSCHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhc--CCEEEECCCCHHHHHHHHHhCCHHHHH
Confidence 233444556666676 45543321 2234577788888 999999865544444444333333333
No 87
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=82.99 E-value=5.6 Score=24.72 Aligned_cols=70 Identities=16% Similarity=0.028 Sum_probs=45.2
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC--CccEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA--PCPVTIVK 157 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~--~~pVliv~ 157 (164)
..+...++..|.++.. +...-+.+.+++.+.+.++|+|.+.+....... ....+.+.+-... +++|++=-
T Consensus 21 ~~v~~~l~~~G~~Vi~-lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 21 KILDHAFTNAGFNVVN-IGVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHHHTTCEEEE-EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEEC
Confidence 3456677777776664 333468999999999999999999876544332 2334455443332 36676644
No 88
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=82.95 E-value=8.7 Score=25.98 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=36.6
Q ss_pred HHHhhhcCCceEEEEecC--C---hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWG--D---ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g--~---~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.+.+.|+.+...-... + ..+++.+..++.++|++|+...++- ....++...+..++=+++
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~i---------l~~~~l~~~~~~~iNiHp 110 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRI---------LSHNFLKYFPNKVINIHP 110 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC---------CCHHHHTTSTTCEEEEES
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCchhh---------CCHHHHhhccCCeEEEcC
Confidence 456667778765421111 1 1467888999999999999755321 123444555555555543
No 89
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=82.80 E-value=1.3 Score=27.95 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=36.0
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCC----cccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGL----GTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~----~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
..+.|.+.+++.+++.||+|-+.. .+........+++.+-...+.||..+-++
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 478999999999999999995532 12111222345666666668999988654
No 90
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=82.62 E-value=9.4 Score=26.14 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=28.0
Q ss_pred HHHhhhcCCceEEEEecC--C---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 88 DTASRQKEANIVAKIYWG--D---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g--~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.+.+.|+.+...-... + ..+++.+..++.++|++|+...+
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 456677777765421111 1 14678889999999999997553
No 91
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=82.60 E-value=5.9 Score=28.62 Aligned_cols=72 Identities=14% Similarity=-0.016 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHh-hcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVM-THAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~-~~~~~pVliv~~ 158 (164)
.+..+++.+.++..+++++...... .....+.+.+...++|+||+. .|.+.+.+ +++.++ ...++|+.++|-
T Consensus 41 ~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTv~~-----v~~~l~~~~~~~pl~iIP~ 114 (337)
T 2qv7_A 41 KRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAA-GGDGTLNE-----VVNGIAEKPNRPKLGVIPM 114 (337)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE-ECHHHHHH-----HHHHHTTCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE-cCchHHHH-----HHHHHHhCCCCCcEEEecC
Confidence 3556778888888877776544333 344555555555678877764 33333332 344443 245789999985
No 92
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=82.56 E-value=9.8 Score=26.26 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccch
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTD 80 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
|+...++++.++|...|--++-.+ ...+-.+..|+..-+..... + ....
T Consensus 1 ~~~~MKvvvl~SGGkDSs~al~~l----~~~G~eV~~L~~~~~~~~~s----~--------~~h~--------------- 49 (237)
T 3rjz_A 1 MVGLADVAVLYSGGKDSNYALYWA----IKNRFSVKFLVTMVSENEES----Y--------MYHT--------------- 49 (237)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHH----HHTTCEEEEEEEEECC--------------------C---------------
T ss_pred CCCCCEEEEEecCcHHHHHHHHHH----HHcCCeEEEEEEEcCCCCCc----c--------ccCC---------------
Confidence 565568999999987777555544 44567777766443321100 0 0000
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC---ChhHHHHHHHhhCCCCEEEEecc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG---DARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...+.+...+...|++....-..| +-.+.+.+..++.+++.+|.|.-
T Consensus 50 -~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 50 -INANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp -CSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred -ccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 001223345566677766554444 24667777777778888888853
No 93
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=82.36 E-value=5.9 Score=25.21 Aligned_cols=73 Identities=8% Similarity=0.113 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh--cCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT--HAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~--~~~~pVliv~ 157 (164)
+..-+.+.+.+...|++++..-........+.....+ +|.||+|++..++... .-...+.+.. -...++.++-
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~g~~p--~~~fl~~l~~~~l~gk~v~~fg 89 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSS--ARGIVLGTPPSQPSEA--VATALSTIFAAAHNKQAIGLFD 89 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHH--CSEEEEECCBSSCCHH--HHHHHHHHHHHCCTTSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHh--CCEEEEEcCCcCCchh--HHHHHHHHHhhhhCCCEEEEEE
Confidence 3455556666666777766544444445666666667 9999999887653211 0122333332 2346666653
No 94
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=82.07 E-value=6.5 Score=29.64 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=26.7
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.++|+|++.|.-.|--++.++.+ .+..++.+++.-.
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred cCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 46899999998777766666543 3788998887543
No 95
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=81.79 E-value=2.6 Score=28.03 Aligned_cols=34 Identities=6% Similarity=-0.017 Sum_probs=27.7
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
++|++++.|+..+..+.+..-.|.+. +.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 79999999999998888888777554 77776664
No 96
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=81.64 E-value=5.4 Score=30.21 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=71.0
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHh
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTAS 91 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (164)
|.--....||..|++. +..|..|+|.++..... .. ...........+.++.+.+.+
T Consensus 10 DLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~---------------~~-----~~~~~r~~Fl~~sL~~L~~~L 65 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----CDRVIPVFIADPRQLIN---------------NP-----YKSEFAVSFMINSLLELDDEL 65 (440)
T ss_dssp CCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSS---------------CT-----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhc----CCCEEEEEEeChhhhcc---------------CC-----cCCHHHHHHHHHHHHHHHHHH
Confidence 3434455677777762 56899999988742110 00 000011122356677777778
Q ss_pred hhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 92 RQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 92 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++.|+.+. +..|++.+.|.+.++ +++.|+....... ... -......+.+...++++..+...
T Consensus 66 ~~~G~~L~--v~~g~~~~~l~~l~~--~~~~v~~~~~~~~-~~~-~rd~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 66 RKKGSRLN--VFFGEAEKVVSRFFN--KVDAIYVNEDYTP-FSI-SRDEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp HTTTCCCE--EEESCHHHHHHHHCT--TCSEEEEECCCSH-HHH-HHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHcCCeEE--EEECCHHHHHHHHHc--CCCEEEEecccCh-HHH-HHHHHHHHHHHHcCceEEEecCC
Confidence 87777665 456999999999999 8999888543222 111 12233445566667888777654
No 97
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=81.47 E-value=9.9 Score=25.61 Aligned_cols=84 Identities=10% Similarity=-0.001 Sum_probs=52.0
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHH
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDAL 84 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (164)
+||.|-+.++..+..++-.++. ....+..+.+|--.++.. .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~~~~I~~Vvs~~~~~------------------------------------~-- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNSSAQIDIVISNKAAV------------------------------------A-- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTCSCEEEEEEESSTTC------------------------------------H--
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCCCcEEEEEEeCCCCh------------------------------------H--
Confidence 4788999999988877766554 222355555554332221 0
Q ss_pred HHHHHHhhhcCCceEEEEec--CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 85 DLLDTASRQKEANIVAKIYW--GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+.+.|+.+...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 42 --~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 42 --GLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp --HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred --HHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 125667778877542211 12 23678888999999999997654
No 98
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=81.07 E-value=5.5 Score=25.58 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC--CccEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA--PCPVTIVK 157 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~--~~pVliv~ 157 (164)
..+...++..|.++.. .....+.+.+++.+.+.++|+|.+.......... ...+.+.+-... +++|++=-
T Consensus 36 ~~va~~l~~~G~eVi~-lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~--~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 36 KVVARALRDAGFEVVY-TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHL--MKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp HHHHHHHHHTTCEEEC-CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHH--HHHHHHHHHHTTCTTSCEEEEE
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHH--HHHHHHHHHhcCCCCCEEEEeC
Confidence 3455566666655542 2223688999999999999999998764443322 223344333332 37777643
No 99
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=80.90 E-value=1.3 Score=28.39 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=35.9
Q ss_pred CChhHHHHHHHhhCCCCEEEEeccCCc----ccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSRGLG----TVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~~~~----~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
....+.|.+.+++++++.+|+|-+-.. .......-.++..+....+.||..+-+..
T Consensus 41 ~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 41 DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 356889999999999999999954221 11111112344556656689999886543
No 100
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=80.90 E-value=8.8 Score=29.76 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=75.4
Q ss_pred eEEEEe--CCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHH
Q 031195 6 KIGVAL--DFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDA 83 (164)
Q Consensus 6 ~iLv~v--d~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
.+|+=+ |.--....||..|++. +..|..|++.++....... + .+ ... ..........+.
T Consensus 41 ~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~--~--~~-----~~~------~~~~r~~Fl~~s 101 (525)
T 2j4d_A 41 VTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTH--F--FN-----FPK------TGALRGGFLMEC 101 (525)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCT--T--TC-----CBS------SCHHHHHHHHHH
T ss_pred eEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccc--c--cc-----CCC------CCHHHHHHHHHH
Confidence 344444 4444456677777663 3478899998875321000 0 00 000 001111223567
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC--ccEEEEeCC
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP--CPVTIVKDP 159 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~--~pVliv~~~ 159 (164)
++.+.+.+++.|+.+. +..|++.+.|.+.+++.+++.|+....... ..... .....+.+...+ +++..+...
T Consensus 102 L~~L~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p-~~~~r-d~~v~~~l~~~gv~i~~~~~~~~ 175 (525)
T 2j4d_A 102 LVDLRKNLMKRGLNLL--IRSGKPEEILPSLAKDFGARTVFAHKETCS-EEVDV-ERLVNQGLKRVGNSTKLELIWGS 175 (525)
T ss_dssp HHHHHHHHHHTTCCCE--EEESCHHHHHHHHHHHHTCSEEEEECCCSH-HHHHH-HHHHHHHHHTTCSSCEEEEECCS
T ss_pred HHHHHHHHHHcCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEeccCCH-HHHHH-HHHHHHHHHhcCCceEEEEecCC
Confidence 7777778888777765 456999999999999999999988643322 22111 223344555555 677766543
No 101
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=80.84 E-value=5.4 Score=25.40 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCC-hhHHHHHHHhhCCCCEEEEeccCCcc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGD-ARERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
+.+-+.+.+.+...|++++..-.... ....+.....+ +|.||+|++..++
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty~g 69 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGR--CTGLVIGMSPAAS 69 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHT--EEEEEEECCBTTS
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHh--CCEEEEEcCcCCC
Confidence 35555666666667777665444444 45666666666 9999999887653
No 102
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=80.52 E-value=8 Score=27.52 Aligned_cols=85 Identities=12% Similarity=-0.055 Sum_probs=49.5
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHH
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDID 82 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..+||.|-+.++..+..++-.+.+- ...++.+ ..|+...+..
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i--~~Visn~p~~----------------------------------- 129 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLHMIP--TAIVSNHPRE----------------------------------- 129 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSCEEE--EEEEESSCGG-----------------------------------
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCCeEE--EEEEcCCChh-----------------------------------
Confidence 3568999999998888777777652 2334444 4444443100
Q ss_pred HHHHHHHHhhhcCCceEEEEecC-C---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYWG-D---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g-~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+++.|+++....... + ..+++.+..++.++|++|+....
T Consensus 130 ----~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 130 ----TFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp ----GSCCTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred ----HHHHHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 1123455666665422211 1 13467788888888888886553
No 103
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=79.90 E-value=2.4 Score=32.39 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcC
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKE 95 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (164)
....||..|++. . ...|..|+|.++..... .. ..........+.++.+.+.+++.|
T Consensus 14 ~DN~aL~~A~~~--~-~~~v~~vfi~dp~~~~~---------------~~------~~~~r~~fl~~sL~~L~~~L~~~G 69 (471)
T 1dnp_A 14 HDNLALAAACRN--S-SARVLALYIATPRQWAT---------------HN------MSPRQAELINAQLNGLQIALAEKG 69 (471)
T ss_dssp TTCHHHHHHSSS--T-TSEEEEEEEECHHHHHH---------------TT------CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHhC--C-CCCEEEEEEECchhhcc---------------CC------CCHHHHHHHHHHHHHHHHHHHHCC
Confidence 344577777653 1 23899999988743210 00 000111223466777777787778
Q ss_pred CceEEEEe--cCChhHHHHHHHhhCCCCEEEEecc
Q 031195 96 ANIVAKIY--WGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 96 ~~~~~~~~--~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+.+..... .|++.+.|.+.+++.+++.|+....
T Consensus 70 ~~L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 70 IPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CeEEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 77665322 6899999999999999999888543
No 104
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=79.70 E-value=9.3 Score=27.17 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh-cCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT-HAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~-~~~~pVliv~~ 158 (164)
.+..+++.+.+...+++++...... .-+..+.+.+.+ ++|.||+. .+.+.+.+ +++.+.. ..++|+.++|-
T Consensus 25 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~-GGDGTl~~-----v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 25 HTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVF-GGDGTVFE-----CTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEE-ECHHHHHH-----HHHHHTTCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEE-ccchHHHH-----HHHHHhhCCCCCcEEEecC
Confidence 3455677788888888777655443 445556655543 78877764 33333332 3444443 25689999985
No 105
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=79.25 E-value=12 Score=25.26 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=27.6
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++++|.+.|.-.|..++.++.+. +.++..+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 579999999998888777776653 357888887544
No 106
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=78.91 E-value=13 Score=25.57 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=26.7
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+|+|+++|...|..++..+.++. ..+.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 489999999999988888777764 35777776544
No 107
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=78.90 E-value=7.8 Score=23.00 Aligned_cols=64 Identities=11% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 83 ALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+++++.+.+.|+.++..... ++..+ +. .++|+|+++..-.....+ .+......++||+++++
T Consensus 20 l~~kl~~~~~~~gi~~~i~~~~~~~~~~----~~--~~~D~Ii~t~~l~~~~~~------~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 20 LVQRIEKYAKSKNINATIEAIAETRLSE----VV--DRFDVVLLAPQSRFNKKR------LEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECSTTHHH----HT--TTCSEEEECSCCSSHHHH------HHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHHHHCCCCeEEEEecHHHHHh----hc--CCCCEEEECCccHHHHHH------HHHHhcccCCCEEEECh
Confidence 3456777777778876654333 23222 23 459999998653322221 22333444678887764
No 108
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=78.62 E-value=13 Score=25.11 Aligned_cols=43 Identities=5% Similarity=0.018 Sum_probs=28.3
Q ss_pred HHHHhhhcCCceEEEEec--CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 87 LDTASRQKEANIVAKIYW--GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..+.+.+.|+.+...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 45 v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 45 VIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 345667778876642211 11 14578888999999999997553
No 109
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=78.55 E-value=12 Score=26.83 Aligned_cols=36 Identities=28% Similarity=0.210 Sum_probs=27.1
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
++++|++.|.-.|.-++..+.+. .+..+.++|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCC
Confidence 68999999988887666666553 3568899998654
No 110
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=78.33 E-value=12 Score=24.79 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHh-hCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIE-DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~-~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
+..+.+.+.+.+.+.++ .+..++..+++...-+ ..++|.||-. |+++..|=++.+.||+-++...
T Consensus 15 ~l~~~~~~i~~e~~~~i--~i~~~~l~~~v~~a~~~~~~~dVIISR------------Ggta~~lr~~~~iPVV~I~~s~ 80 (196)
T 2q5c_A 15 NLLNLFPKLALEKNFIP--ITKTASLTRASKIAFGLQDEVDAIISR------------GATSDYIKKSVSIPSISIKVTR 80 (196)
T ss_dssp HHHHHHHHHHHHHTCEE--EEEECCHHHHHHHHHHHTTTCSEEEEE------------HHHHHHHHTTCSSCEEEECCCH
T ss_pred HHHHHHHHHHhhhCCce--EEEECCHHHHHHHHHHhcCCCeEEEEC------------ChHHHHHHHhCCCCEEEEcCCH
Confidence 34444555555554544 4555665544433322 5788865542 4567777777889999988653
No 111
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=78.04 E-value=14 Score=25.24 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHH---HhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEA---IEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+..+.+.+.+.+.+...+..+..++..+++... ....++|.||-. |+++..|=++.+.||+-++
T Consensus 22 ~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~ 89 (225)
T 2pju_A 22 TRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIK 89 (225)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEEC
T ss_pred HHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEec
Confidence 3555566667776666677777777665555443 233458865543 5567777777889999988
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 90 vs~ 92 (225)
T 2pju_A 90 PSG 92 (225)
T ss_dssp CCH
T ss_pred CCH
Confidence 653
No 112
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=77.66 E-value=14 Score=24.97 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=28.1
Q ss_pred HHHhhhcCCceEEEEec--CC---hhHHHHHHHhhCCCCEEEEeccC
Q 031195 88 DTASRQKEANIVAKIYW--GD---ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~--g~---~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
.+.+.+.|+.+...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 43 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 43 LERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 45666777776542211 11 14678899999999999997553
No 113
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=77.61 E-value=2.5 Score=28.27 Aligned_cols=36 Identities=17% Similarity=-0.034 Sum_probs=28.3
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
..++|++++.|+-.+.++.+..-.|.+ .+.+++++-
T Consensus 7 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 42 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVM 42 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 348999999999999988888777744 577776664
No 114
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=77.33 E-value=16 Score=26.07 Aligned_cols=78 Identities=8% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.+.. .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+-..-..|...++.||+++..
T Consensus 68 ~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (301)
T 1xky_A 68 VALYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV 146 (301)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444545544432 23333323222444443 55588899999888766443222111112335677888999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 147 P 147 (301)
T 1xky_A 147 P 147 (301)
T ss_dssp H
T ss_pred c
Confidence 3
No 115
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=77.31 E-value=11 Score=26.76 Aligned_cols=34 Identities=9% Similarity=-0.098 Sum_probs=22.6
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYII 38 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll 38 (164)
.+||.|-+.++..+..++-.+.+- ...++++.+|
T Consensus 88 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~V 121 (287)
T 3nrb_A 88 RKKVVIMVSKFDHCLGDLLYRHRL-GELDMEVVGI 121 (287)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEE
T ss_pred CcEEEEEEeCCCcCHHHHHHHHHC-CCCCeEEEEE
Confidence 568888888888877777666652 3344555544
No 116
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=77.16 E-value=22 Score=27.02 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=24.9
Q ss_pred HHHHHHhhhcCCceEEEEecCChh---HHHHHHHhhCCCCEEEEeccCCcc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDAR---ERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
+++..+....++.+.......++. ...++.++..++|+|++-+.++..
T Consensus 145 eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 145 HQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred HHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 444445555555443211112433 334556666778888887666543
No 117
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=77.04 E-value=8.6 Score=25.80 Aligned_cols=44 Identities=5% Similarity=-0.119 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
...+.+.+.+++.|.+++..-......+.+.+..++ +|.|+++-
T Consensus 44 ~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~--ad~I~l~G 87 (206)
T 3l4e_A 44 FYVEAGKKALESLGLLVEELDIATESLGEITTKLRK--NDFIYVTG 87 (206)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH--SSEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh--CCEEEECC
Confidence 455667777777787655432222344566666777 99999976
No 118
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=77.00 E-value=9.1 Score=24.97 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=24.1
Q ss_pred ceEEEEeCCC---ccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 5 RKIGVALDFS---PSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 5 ~~iLv~vd~s---~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
.+||+.+... ..+..+++...+.+. .+..+.++.+.+
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~ 46 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISG 46 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH
Confidence 4777766543 346677777777666 567777777654
No 119
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=76.89 E-value=7.6 Score=26.26 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=42.2
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEE--eccCCcccchhcccchhHHHhhcC---CccEEEE
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVM--GSRGLGTVRRIILGSVSNYVMTHA---PCPVTIV 156 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivl--g~~~~~~~~~~~~~s~~~~i~~~~---~~pVliv 156 (164)
..+...++..|.++.. +...-+.+.+++.+.++++|+|.+ ...-..... ....+.+.+-... ++||++=
T Consensus 110 ~iv~~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 110 RLVTTMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEE
Confidence 3455666777766543 333568999999999999999999 433222221 1233444444443 4677664
No 120
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=76.70 E-value=14 Score=26.45 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+..+...+.+.. .+.+-.-+.. +..++| .+.+++.++|-+.+-.+.......--+-..-..|...++.||+++.
T Consensus 68 ~~vi~~~~~~~~g-rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 68 KQVATRVTELVNG-RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444545544432 3444444444 555544 5568889999998876654322211111233567788899999987
No 121
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=76.67 E-value=15 Score=26.09 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--ChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+..+...+.... ++...+..| +..++| .+.+++.++|-+.+-.+.......--+-..-..|...++.||+++
T Consensus 56 ~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 132 (294)
T 2ehh_A 56 EKVIEFAVKRAAG---RIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIY 132 (294)
T ss_dssp HHHHHHHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3444444444432 333333334 444444 556888999999887665432221111122356777889999998
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
..+
T Consensus 133 n~P 135 (294)
T 2ehh_A 133 NIP 135 (294)
T ss_dssp ECH
T ss_pred eCC
Confidence 644
No 122
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=76.50 E-value=14 Score=26.21 Aligned_cols=78 Identities=10% Similarity=0.025 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+-.+.......--+-..-..|...++.||+++..
T Consensus 57 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 57 ADVVMMTLDLADG-RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444555544432 23433323222444444 45577789999888766543222111112335677888999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 136 P 136 (292)
T 2ojp_A 136 P 136 (292)
T ss_dssp H
T ss_pred c
Confidence 3
No 123
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=76.35 E-value=8.2 Score=25.77 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=41.8
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC---CccEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA---PCPVTIVK 157 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~---~~pVliv~ 157 (164)
.-+...++..|.++.. +...-+.+.+++.+++.++|+|.+.......... ...+.+.+=+.. ++||++--
T Consensus 106 ~~va~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 106 NLVAMMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEES
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEEC
Confidence 3445555566665543 3335689999999999999999998754333222 222333333332 27777754
No 124
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=75.84 E-value=11 Score=26.99 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.0
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
..++++.+.| -.|.-|+- ++...|..+..+|+.
T Consensus 179 ~~kvlvllSG-vDS~vaa~----ll~~~G~~v~~v~~~ 211 (307)
T 1vbk_A 179 EGRMIGILHD-ELSALAIF----LMMKRGVEVIPVYIG 211 (307)
T ss_dssp TCEEEEECSS-HHHHHHHH----HHHHBTCEEEEEEES
T ss_pred CCcEEEEEeC-CcHHHHHH----HHHhCCCeEEEEEEE
Confidence 4689999999 76654433 334468999999986
No 125
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=75.32 E-value=17 Score=25.78 Aligned_cols=78 Identities=8% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+++-.+.......--+-..-..|...++.||+++..
T Consensus 56 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (292)
T 2vc6_A 56 EQVVEITIKTANG-RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNI 134 (292)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3444555544432 24444333333444444 55688899999988766443222111111234677788999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 135 P 135 (292)
T 2vc6_A 135 P 135 (292)
T ss_dssp H
T ss_pred c
Confidence 3
No 126
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=75.31 E-value=9.7 Score=22.10 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEE
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIV 156 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv 156 (164)
...+.+...+...|.++. ...+ .++.++..++..+|++++...-.+...+. .....+-.. ..+||+++
T Consensus 16 ~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 16 ALSATLRSALEGRGFTVD---ETTD-GKGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHHHTCEEE---EECC-HHHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHHHhcCceEE---EecC-HHHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 444555555555565443 2233 34455566667799999986532111111 234444443 45899988
No 127
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=75.02 E-value=21 Score=26.15 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=40.4
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.|++++... ++ .+-...++.++|.+++|..+- +..-........--+.++.++|++|+=+
T Consensus 201 a~eL~~~GI~vtlI~--Ds---a~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 201 AWELMKDGIEVYVIT--DN---MAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHHTTTCEEEEEC--GG---GHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHhCCCCEEEEe--hh---HHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 344556688887643 33 233445567799999998763 3333333333444466777899999843
No 128
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=74.21 E-value=13 Score=25.88 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVK 157 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~ 157 (164)
..+...++..|.++.. +...-+.+.+++.+++.++|+|.+.......... ...+.+.+-+. .++||++--
T Consensus 141 ~iva~~L~~~G~~Vi~-LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG 211 (258)
T 2i2x_B 141 NIVTALLRANGYNVVD-LGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGG 211 (258)
T ss_dssp HHHHHHHHHTTCEEEE-EEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEES
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEEC
Confidence 4455666777777654 3335689999999999999999998754433221 12233333222 348887754
No 129
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=74.19 E-value=23 Score=26.70 Aligned_cols=71 Identities=8% Similarity=0.027 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHH---HhhCCC-CEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEA---IEDLKL-DSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~-dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
....+++...++..|++++..+..- ...+.+.++ ++..++ +.+|.+....+.+. .-+.-.+++||+-
T Consensus 278 ~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp--------gvva~~t~~PVIg 349 (425)
T 2h31_A 278 LGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG--------PVMSGNTAYPVIS 349 (425)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH--------HHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH--------hHHhccCCCCEEE
Confidence 4567778888888899999888773 444555555 445667 57777766555443 4455678899999
Q ss_pred EeCC
Q 031195 156 VKDP 159 (164)
Q Consensus 156 v~~~ 159 (164)
||..
T Consensus 350 vP~~ 353 (425)
T 2h31_A 350 CPPL 353 (425)
T ss_dssp CCCC
T ss_pred eeCc
Confidence 9974
No 130
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=74.06 E-value=16 Score=26.04 Aligned_cols=78 Identities=8% Similarity=0.035 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.+.. .+.+-.-+...+..++| .+.+++.++|-+.+-.+.......--+-..-..|...++.||+++..
T Consensus 68 ~~vi~~~~~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (306)
T 1o5k_A 68 EKLVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNV 146 (306)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3444555544432 23433333222444444 55578889999988766543222111112335677888999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 147 P 147 (306)
T 1o5k_A 147 P 147 (306)
T ss_dssp H
T ss_pred c
Confidence 3
No 131
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=73.93 E-value=16 Score=26.59 Aligned_cols=78 Identities=14% Similarity=0.043 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.++...+.... .+.+-.-+...+..++| .+.+++.++|-+.+-.+.......--+-..-..|...++.||+++..
T Consensus 87 ~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 165 (343)
T 2v9d_A 87 KAIARFAIDHVDR-RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNF 165 (343)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444444444432 23433333223444444 55588889999888766543222111112335677888999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 166 P 166 (343)
T 2v9d_A 166 P 166 (343)
T ss_dssp H
T ss_pred c
Confidence 3
No 132
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=73.59 E-value=10 Score=27.78 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhcCCceEEEEecCCh----hHHHHHHHhhCCCCEEE-EeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDA----RERLLEAIEDLKLDSLV-MGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliv-lg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..+++.+.+...++++.+.+..|++ .+.+.+.+++.++|+|| +|...-. +++..+......|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~--------D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL--------DTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH--------HHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH--------HHHHHHHHhcCCCEEEec
Confidence 4566666777777777544555653 44666778888999987 5532221 122333333468999998
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 118 TTa 120 (370)
T 1jq5_A 118 TAA 120 (370)
T ss_dssp SSC
T ss_pred ccc
Confidence 753
No 133
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=73.50 E-value=22 Score=25.31 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+=..-..|...++.||+++..
T Consensus 60 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (300)
T 3eb2_A 60 EAVVRATIEAAQR-RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTN 138 (300)
T ss_dssp HHHHHHHHHHHTT-SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 3444444444432 34444444433444443 45688889999998866543322211112346788889999999986
Q ss_pred CCC
Q 031195 159 PSF 161 (164)
Q Consensus 159 ~~~ 161 (164)
+.+
T Consensus 139 P~~ 141 (300)
T 3eb2_A 139 PQF 141 (300)
T ss_dssp TTT
T ss_pred ccc
Confidence 554
No 134
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=73.44 E-value=21 Score=25.48 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--ChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+..+...+.+.. ++...+..| +..++| .+.+++.++|-+.+..+.......--+-..-..|...++.||+++
T Consensus 72 ~~v~~~~~~~~~g---rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilY 148 (304)
T 3cpr_A 72 LELLKAVREEVGD---RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLY 148 (304)
T ss_dssp HHHHHHHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHhCC---CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3444444444432 333333334 444444 556888999998887654432221111122356777889999998
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
..+
T Consensus 149 n~P 151 (304)
T 3cpr_A 149 DIP 151 (304)
T ss_dssp ECH
T ss_pred eCc
Confidence 753
No 135
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.29 E-value=27 Score=26.31 Aligned_cols=31 Identities=0% Similarity=-0.184 Sum_probs=21.2
Q ss_pred CCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 13 FSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 13 ~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+..+-.+...|..+++..+-++.++-....
T Consensus 110 GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 110 GAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp TSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3444667788888877665778877776544
No 136
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=73.24 E-value=30 Score=26.82 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=32.2
Q ss_pred EEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 101 KIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 101 ~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+..+.-...+.+.+++.++||++-+++++...+. ..+..++.++|.+.+-
T Consensus 420 ~v~~~~D~~~l~~~i~~~~pDLlig~s~~k~~a~~------~~~~~~~~giP~irig 470 (523)
T 3u7q_B 420 TVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRD------TLHKGKEFEVPLIRIG 470 (523)
T ss_dssp EEEESCCHHHHHHHHHHTCCSEEEECTTHHHHHHH------HHHHCGGGCCCEEECS
T ss_pred EEEECCCHHHHHHHHHhcCCCEEEECccHHHHHHH------hhcccccCCCceEEec
Confidence 35556556788899999999999887665421111 1123455578877653
No 137
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=73.09 E-value=17 Score=26.34 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.+.. .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+-..-..|...++.||+++..
T Consensus 90 ~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 90 RRAIEAAATILRG-RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444444444432 23333333223444444 55688889999988766543322111112235677788999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 169 P 169 (332)
T 2r8w_A 169 P 169 (332)
T ss_dssp H
T ss_pred c
Confidence 3
No 138
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=72.86 E-value=16 Score=25.88 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--ChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+..+...+.... ++-..+..| +..++| .+.+++.++|-+.+-.+.......--+-..-..|...++.||+++
T Consensus 56 ~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 132 (289)
T 2yxg_A 56 KKVIEKVVDVVNG---RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLY 132 (289)
T ss_dssp HHHHHHHHHHHTT---SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3444444444432 333333334 444443 556788899998887665432221111123356777889999998
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
..+
T Consensus 133 n~P 135 (289)
T 2yxg_A 133 NVP 135 (289)
T ss_dssp ECH
T ss_pred eCc
Confidence 644
No 139
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=72.76 E-value=21 Score=25.35 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--ChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+..+...+..... ++...+..| +..++| .+.+++.++|-+.+..+.......--+-..-..|...++.||+++
T Consensus 63 ~~v~~~~~~~~~g~--rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 140 (301)
T 3m5v_A 63 RTCIEIAVETCKGT--KVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLY 140 (301)
T ss_dssp HHHHHHHHHHHTTS--SCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHhCCC--CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 34444444444331 333333334 344333 456888999999998665433222111123466778889999998
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
..+
T Consensus 141 n~P 143 (301)
T 3m5v_A 141 NVP 143 (301)
T ss_dssp ECH
T ss_pred eCc
Confidence 643
No 140
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=72.32 E-value=15 Score=26.38 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=39.4
Q ss_pred HHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEEeC
Q 031195 84 LDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIVKD 158 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv~~ 158 (164)
.+++.+.+...++++....... .-...+.+.+...++|+||+. .|.+.+. .+++.+.. ...+|+.++|-
T Consensus 46 ~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~-GGDGTl~-----~v~~~l~~~~~~~~~plgiiP~ 118 (332)
T 2bon_A 46 LREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAG-GGDGTIN-----EVSTALIQCEGDDIPALGILPL 118 (332)
T ss_dssp HHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEE-ESHHHHH-----HHHHHHHHCCSSCCCEEEEEEC
T ss_pred HHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEE-ccchHHH-----HHHHHHhhcccCCCCeEEEecC
Confidence 4556677777787777654332 333444444444468877653 2333333 24555553 45689888874
No 141
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=72.13 E-value=10 Score=28.77 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred CCceEEEEecCChhHHHHHH--HhhCCCCEEEEe-ccCCcccchhcccch
Q 031195 95 EANIVAKIYWGDARERLLEA--IEDLKLDSLVMG-SRGLGTVRRIILGSV 141 (164)
Q Consensus 95 ~~~~~~~~~~g~~~~~I~~~--a~~~~~dlivlg-~~~~~~~~~~~~~s~ 141 (164)
+.-+.+.+..|++.+.|.+. |.++++|.|.+= +.+.+.+.....|.+
T Consensus 150 ~p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT 199 (516)
T 1xrs_A 150 GPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGAT 199 (516)
T ss_dssp SCEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCC
T ss_pred CCEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCCC
Confidence 34455667779999999887 888999998764 455555555555543
No 142
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=72.11 E-value=15 Score=26.09 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+-.+.......--+-..-..|...++.||+++..
T Consensus 56 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 134 (297)
T 2rfg_A 56 KRVVALVAEQAQG-RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNI 134 (297)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444555544432 24443333333444444 55688889999988766543222111112335677788999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 135 P 135 (297)
T 2rfg_A 135 P 135 (297)
T ss_dssp H
T ss_pred c
Confidence 3
No 143
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=71.65 E-value=15 Score=22.49 Aligned_cols=71 Identities=6% Similarity=0.040 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
....+.+...+...|..+. .-...++.++..++..+|+|++...-.. ..++ .+...+-.. ..+||+++-..
T Consensus 24 ~~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 24 EVILQRLQQLLSPLPYTLH----FARDATQALQLLASREVDLVISAAHLPQ-MDGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHHHHTTSSCEEE----EESSHHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHHHhcccCcEEE----EECCHHHHHHHHHcCCCCEEEEeCCCCc-CcHH---HHHHHHHhHCCCCeEEEEECC
Confidence 3555666777777664332 2233445556667788999999865322 1111 123333333 35888887543
No 144
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=70.91 E-value=16 Score=25.90 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.+.. .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+-..-..|...++.||+++..
T Consensus 57 ~~v~~~~~~~~~g-r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3a5f_A 57 KETIKFVIDKVNK-RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNV 135 (291)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444555544432 24433333222444443 55688899999988766443222110111123456677899999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 136 P 136 (291)
T 3a5f_A 136 P 136 (291)
T ss_dssp H
T ss_pred c
Confidence 4
No 145
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=69.77 E-value=32 Score=25.60 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=40.5
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.|++++... ++. +-...++.++|.+++|..+- |..-........--+.++.++|++|+=+
T Consensus 230 A~eL~~~GIpvtlI~--Dsa---~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 230 VYECVQEDIPCTLIC--DGA---ASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHHHTTCCEEEEC--GGG---HHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEEe--hhH---HHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCC
Confidence 344556688887644 333 33345567799999998763 3333333333444456777899999844
No 146
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=69.19 E-value=16 Score=25.90 Aligned_cols=76 Identities=9% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--ChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+..+...+.... ++...+..| +..++| .+.+++.++|-+.+..+.......--+-..-..|...++.||+++
T Consensus 60 ~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilY 136 (293)
T 1f6k_A 60 KEIFRIAKDEAKD---QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVY 136 (293)
T ss_dssp HHHHHHHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHhCC---CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3444444444432 333333334 444443 555788899998887665432221111123355777778999998
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
..+
T Consensus 137 n~P 139 (293)
T 1f6k_A 137 SIP 139 (293)
T ss_dssp ECH
T ss_pred ECc
Confidence 643
No 147
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=68.56 E-value=8.7 Score=27.87 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=36.6
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC-c-ccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL-G-TVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~-~-~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+..++++...+ +|+||+|.... + -...+....+.+. ++++++|++.|.+-
T Consensus 167 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 167 KPLREGLEAIRK--ADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCS
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 456789999999 99999995432 2 2234556667776 67789999888764
No 148
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=68.15 E-value=12 Score=25.01 Aligned_cols=34 Identities=6% Similarity=-0.059 Sum_probs=27.9
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
+|++++.|+-.+.++.+..-.|.+..+..++++-
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 7999999999999988888887654477777665
No 149
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=68.14 E-value=6.8 Score=28.65 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=35.2
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC--cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL--GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~--~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+.++.+.+ +|+||+|.... +-...++...+.+. ++++++|++.|.+
T Consensus 177 ~a~p~al~AI~~--AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 177 QAVQPVIDAIMA--ADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 456678888998 99999995432 22234455666666 6778899988875
No 150
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=68.10 E-value=15 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=23.6
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
|..+.++.++.|+... +.+++++...+..+..+++..
T Consensus 9 m~~~~~lilAlD~~~~-----~~a~~~v~~~~~~v~~~Kvg~ 45 (228)
T 3m47_A 9 MDVMNRLILAMDLMNR-----DDALRVTGEVREYIDTVKIGY 45 (228)
T ss_dssp CCCGGGEEEECCCCSH-----HHHHHHHHTTTTTCSEEEEEH
T ss_pred hhcCCCeEEEeCCCCH-----HHHHHHHHHcCCcccEEEEcH
Confidence 4445689999999763 334444455555667777744
No 151
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=67.81 E-value=23 Score=26.28 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=40.2
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.|++++... ++. +-...++.++|.+++|..+- |..-........--+.++.++|++|+=+
T Consensus 226 A~eL~~~GIpvtlI~--Dsa---~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 226 AWELMQGGIDVTLIT--DSM---AAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHHTTTCEEEEEC--GGG---HHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEEe--hhH---HHHHhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 344556678877543 333 33344556799999998763 3333333333444566777899999844
No 152
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=67.76 E-value=37 Score=25.64 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChh---HHHHHHHhhCCCCEEEEeccCCcc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDAR---ERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
+++.......++.+.......++. ...++.+...++|+|++.+.++..
T Consensus 142 eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 142 DQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 344444444455443221112333 233455555678888888776544
No 153
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=67.51 E-value=17 Score=25.90 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--ChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC-ccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP-CPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~-~pVli 155 (164)
.+..+...+.+.. ++...+..| +..++| .+.+++.++|-+.+-.+.......--+-..-..|...++ .||++
T Consensus 67 ~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiil 143 (303)
T 2wkj_A 67 EQVLEIVAEEAKG---KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVV 143 (303)
T ss_dssp HHHHHHHHHHHTT---TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 3444444444432 333334344 444443 455788899998887655432221111123355777788 99999
Q ss_pred EeCC
Q 031195 156 VKDP 159 (164)
Q Consensus 156 v~~~ 159 (164)
+.-+
T Consensus 144 Yn~P 147 (303)
T 2wkj_A 144 YNIP 147 (303)
T ss_dssp EECH
T ss_pred EeCc
Confidence 8643
No 154
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=67.07 E-value=16 Score=21.20 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+...+...|..+.. ..+ .++.++..++.++|++++...-.+ ..++ .....+-...++|++++-.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlii~D~~~p~-~~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 13 PIADILEFNLRKEGYEVHC---AHD-GNEAVEMVEELQPDLILLDIMLPN-KDGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESS-HHHHHHHHHTTCCSEEEEETTSTT-THHH---HHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHhCCEEEEE---eCC-HHHHHHHHhhCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCEEEEEC
Confidence 3444455555555654432 233 445566777889999999864322 1111 1334444455689888753
No 155
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=66.94 E-value=29 Score=24.11 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.+...++|-||+.......... .-..+...++||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~------~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 18 QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN------VVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH------HHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH------HHHHHHHCCCeEEEECC
Confidence 4677778888888888777655444543 345666777889999987554332221 12345667899998854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 92 ~ 92 (313)
T 3m9w_A 92 M 92 (313)
T ss_dssp C
T ss_pred c
Confidence 3
No 156
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=66.90 E-value=30 Score=25.40 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=39.9
Q ss_pred HHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc--ccchhcccchhHHHhhcCCccEEEEeC
Q 031195 88 DTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG--TVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~--~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.|++++... ++ ++-...++.++|.+++|..+-. +.-........--+.++.++|++|+=+
T Consensus 199 a~eL~~~GI~vtlI~--Ds---a~~~~M~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 199 CWELMEDGIDVTLIT--DS---MVGIVMQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHHHHTTCCEEEEC--GG---GHHHHHHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHhCCCCEEEEe--hh---HHHHHhhcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEEeCc
Confidence 334556688888644 32 3334455677999999987632 232222233344456777899999844
No 157
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=66.51 E-value=24 Score=23.33 Aligned_cols=49 Identities=8% Similarity=-0.092 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..+.+.+.+.+.+.|.+++..-.. ++..+.+.+...+ +|.||++++-..
T Consensus 33 ~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y~ 82 (204)
T 2amj_A 33 DTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGWW 82 (204)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCccc
Confidence 455566666666667777765554 4456778888888 999999987543
No 158
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=66.45 E-value=6.2 Score=26.64 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=26.8
Q ss_pred CCCceEEEEeCCCccHHH-HHHHHHHhcCCCCCeEEEEE
Q 031195 2 AGDRKIGVALDFSPSSKF-ALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 2 ~~~~~iLv~vd~s~~~~~-al~~a~~la~~~~~~l~ll~ 39 (164)
...++|++++.|+-...+ +++..-.|.+ .+..++++-
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~ 40 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVV 40 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEE
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEE
Confidence 356899999999987775 6776666544 477776654
No 159
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=66.27 E-value=33 Score=24.56 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+-..-..|...++.||+++..
T Consensus 79 ~~v~~~~v~~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 79 IQVIRRVVDQVKG-RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444444444432 23443333222444443 45688899999998865443222211112346677888999999865
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 158 P 158 (314)
T 3qze_A 158 P 158 (314)
T ss_dssp H
T ss_pred c
Confidence 3
No 160
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=65.81 E-value=31 Score=24.76 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+++..+.......--+-..-..|...++.||+++..
T Consensus 80 ~~v~~~~v~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 158 (315)
T 3na8_A 80 DEVVDFTLKTVAH-RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNN 158 (315)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3444444444432 24444333333444433 45588899999999876543322211112346677888999999874
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 159 P 159 (315)
T 3na8_A 159 P 159 (315)
T ss_dssp H
T ss_pred c
Confidence 3
No 161
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=65.02 E-value=12 Score=27.18 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=36.0
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC-c-ccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL-G-TVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~-~-~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+..+.++...+ +|+||+|.... + -...++...+.+. ++.+++|++.|.+-
T Consensus 166 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 166 EPMNEAIEALEQ--ADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSNV 218 (332)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECCS
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 456788999999 99999995432 2 2234455666665 67789999988763
No 162
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=64.79 E-value=5.8 Score=24.75 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=26.7
Q ss_pred CCceEEEEeCCCcc----HHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 3 GDRKIGVALDFSPS----SKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 3 ~~~~iLv~vd~s~~----~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.||++++.+..+++ +..+++.|..++.. +..+.++...+.
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~~DG 47 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-DQDVCVLFLDDG 47 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-CCEEEEEECGGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEEhHH
Confidence 46889999988876 35677777665543 567766665443
No 163
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=64.67 E-value=36 Score=24.40 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+=..-..|...++.||+++..
T Consensus 78 ~~v~~~~v~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 156 (315)
T 3si9_A 78 KRIIELCVEQVAK-RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI 156 (315)
T ss_dssp HHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 3444444444432 24444333333444443 45688899999988865543222211112345677888999999865
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 157 P 157 (315)
T 3si9_A 157 P 157 (315)
T ss_dssp H
T ss_pred c
Confidence 4
No 164
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=64.35 E-value=28 Score=24.50 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=31.3
Q ss_pred HHHHHhhCCCCEEEEeccCCcc-cchhcccchhHHHhhcCCccEEEEeCC
Q 031195 111 LLEAIEDLKLDSLVMGSRGLGT-VRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 111 I~~~a~~~~~dlivlg~~~~~~-~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
..+.+++.++|-+.+..+.... ...--+-..-..|...++.||+++..+
T Consensus 82 la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 131 (286)
T 2r91_A 82 LAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYP 131 (286)
T ss_dssp HHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCh
Confidence 3555888999999888665433 221111123356777889999998753
No 165
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=64.24 E-value=30 Score=25.23 Aligned_cols=76 Identities=12% Similarity=-0.001 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhc
Q 031195 15 PSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQK 94 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (164)
..++..+++|+++|+..+.+|+++|=-..-... ...+++.+.+...+
T Consensus 144 ~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t--------------------------------~glf~~~~~eva~~- 190 (336)
T 1wpw_A 144 FASERIAKVGLNFALRRRKKVTCVHKANVMRIT--------------------------------DGLFAEACRSVLKG- 190 (336)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTH--------------------------------HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEECCcchhhh--------------------------------hHHHHHHHHHHHHh-
Confidence 346788999999999887788888832222111 13555566666655
Q ss_pred CCceEEEEecCChhHHHHHHHhhCCCCEEEEe
Q 031195 95 EANIVAKIYWGDARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 95 ~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg 126 (164)
++.++...+ ++..-.++..= .++|.+|..
T Consensus 191 ~I~~~~~~v-D~~~~~lv~~P--~~FDVivt~ 219 (336)
T 1wpw_A 191 KVEYSEMYV-DAAAANLVRNP--QMFDVIVTE 219 (336)
T ss_dssp TSEEEEEEH-HHHHHHHHHCG--GGCSEEEEC
T ss_pred CceeEEEeH-HHHHHHHhhCc--ccceEEEEc
Confidence 666665432 33333343333 358877775
No 166
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=64.14 E-value=21 Score=21.37 Aligned_cols=72 Identities=6% Similarity=-0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...+.+...+...|..+. ...+..+++....+...+|+|++...-..+..++ .+...+-....+||+++-..
T Consensus 16 ~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 16 FQAKTIANILNKYGYTVE---IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEE---EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECC
Confidence 444556666666665433 2244444444333337899999986532111111 12344444456899988653
No 167
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=63.71 E-value=34 Score=24.16 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+=..-..|...++.||+++..
T Consensus 57 ~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 57 TQVIKEIIRVANK-RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 3444444444432 24443333222444443 45588889999988865543222111112346677888999999865
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 136 P 136 (291)
T 3tak_A 136 P 136 (291)
T ss_dssp H
T ss_pred c
Confidence 3
No 168
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=63.55 E-value=8 Score=28.10 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=35.1
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC--cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL--GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~--~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+.++...+ +|+||+|.... +-...++...+.+. ++++++|++.|.+
T Consensus 173 ~a~p~al~AI~~--AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 173 LASRRVVQTILE--SDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp CBCSHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 345678888888 99999995432 22234455666666 6778899988875
No 169
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=63.52 E-value=8.2 Score=25.21 Aligned_cols=43 Identities=14% Similarity=-0.065 Sum_probs=28.3
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
|+.|.+||+.+..+..+..+++...+-+...+..+.++.+.+.
T Consensus 1 M~~mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 1 MSCKPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp --CCCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CCCCcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 6655677776655445677777777766666788888887554
No 170
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=63.44 E-value=23 Score=21.60 Aligned_cols=69 Identities=9% Similarity=0.074 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~ 158 (164)
...+.+...+...|..+. .-+..++.++......+|++++...-.+ ..++ .....+-.. ..+||+++-.
T Consensus 14 ~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 14 DLRKAMQQTLELAGFTVS----SFASATEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHHHHHHHTTCEEE----EESCHHHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHcCcEEE----EECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 344455555555565433 2233455667777788999999865322 1111 123444333 3588888754
No 171
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=63.08 E-value=33 Score=23.41 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.....++|-||+.......... .-..+...+.||+.+-.
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~------~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 21 LKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP------WLQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH------HHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH------HHHHHHHCCCcEEEecC
Confidence 4667778888888887777654444543 445666666789999986443211111 12234556889888854
No 172
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=62.92 E-value=25 Score=24.89 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcc-cchhcccchhHHHhhcC---CccEEE
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGT-VRRIILGSVSNYVMTHA---PCPVTI 155 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~-~~~~~~~s~~~~i~~~~---~~pVli 155 (164)
+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+..+.... ...--+-..-..|...+ +.||++
T Consensus 60 ~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiil 138 (294)
T 3b4u_A 60 AILSSFIAAGIA-PSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILV 138 (294)
T ss_dssp HHHHHHHHTTCC-GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHHHhCC-CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 444444443332 23443333333444444 556888999999888665433 22111112235677777 899999
Q ss_pred EeCC
Q 031195 156 VKDP 159 (164)
Q Consensus 156 v~~~ 159 (164)
+..+
T Consensus 139 Yn~P 142 (294)
T 3b4u_A 139 YNIP 142 (294)
T ss_dssp EECH
T ss_pred EECc
Confidence 8643
No 173
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=62.63 E-value=34 Score=23.38 Aligned_cols=73 Identities=8% Similarity=0.059 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.....++|-||+.......... . -..+...++||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~-----~-~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 24 QRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGS-----A-IEEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHH-----H-HHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHH-----H-HHHHHHcCCCEEEecC
Confidence 4667778888888888777655444543 345666667889999986443322111 1 2344566899999854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 98 ~ 98 (293)
T 3l6u_A 98 M 98 (293)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=62.49 E-value=39 Score=23.96 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHH--HHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARER--LLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++ ..+.+++.++|-+.+..+.......--+=..-..|...++.||+++..
T Consensus 63 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 63 TAVIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3444444444432 2444333322244443 345688899999988865543222111112346678888999999865
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 142 P 142 (297)
T 3flu_A 142 P 142 (297)
T ss_dssp H
T ss_pred C
Confidence 3
No 175
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=62.38 E-value=43 Score=24.43 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+...+.+.+.+...+++++..-........+.+...+ +|.||+|++...
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~--~d~iiigsP~y~ 319 (404)
T 2ohh_A 271 RKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILE--SGAIALGAPTIY 319 (404)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCEET
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECcccc
Confidence 3455556666666666666544444344556666666 999999987544
No 176
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=62.35 E-value=25 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=28.0
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHH----HhhCCCCEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEA----IEDLKLDSLVMG 126 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dlivlg 126 (164)
..+.+.+.+.|.++.....-+|-.+.|.+. ....++|+|+..
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 446677778888887766666555555443 334679998874
No 177
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=62.26 E-value=20 Score=26.18 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.|++++..... ....++ . ++|.+++|..+- |..-........--+.++.++|++|+=+
T Consensus 184 tA~eL~~~GI~vtlI~Ds--a~~~~M---~--~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 184 TAKELASYGIPVIYVVDS--AARHYM---K--MTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHHHHHTTCCEEEECGG--GTTTTG---G--GCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHhCCCCEEEEehH--HHHHHH---H--hCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEecc
Confidence 344555678888875533 222233 4 499999998763 3333333333344456777899999843
No 178
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=62.16 E-value=26 Score=24.82 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=33.3
Q ss_pred ChhHHH--HHHHhhCCCCEEEEeccCCcc-cchhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERL--LEAIEDLKLDSLVMGSRGLGT-VRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I--~~~a~~~~~dlivlg~~~~~~-~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+..++| .+.+++.++|-+.+..+.... ...--+-..-..|...++.||+++..+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYP 132 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 344443 555788899998887665433 221111122356777889999998643
No 179
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=61.76 E-value=10 Score=25.51 Aligned_cols=36 Identities=11% Similarity=-0.104 Sum_probs=26.8
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++|++++.|+-.+.++.+..-.|.+..+..++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 479999999999999888888777553576666654
No 180
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=61.61 E-value=25 Score=21.56 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHh---hcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVM---THAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~---~~~~~pVliv~ 157 (164)
...++.+...++..|..... ..+...+.++..++.++|+|++...=.+ ..++ .+...|= .....||+++-
T Consensus 22 ~~~r~~l~~~L~~~G~~~v~---~a~~g~~al~~~~~~~~DlillD~~MP~-mdG~---el~~~ir~~~~~~~ipvI~lT 94 (134)
T 3to5_A 22 STMRRIVKNLLRDLGFNNTQ---EADDGLTALPMLKKGDFDFVVTDWNMPG-MQGI---DLLKNIRADEELKHLPVLMIT 94 (134)
T ss_dssp HHHHHHHHHHHHHTTCCCEE---EESSHHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEE---EECCHHHHHHHHHhCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCCCCeEEEEE
Confidence 35555666777777764221 2223344456667778999999854221 1111 1233332 12358999886
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 95 a~ 96 (134)
T 3to5_A 95 AE 96 (134)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 181
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=61.05 E-value=46 Score=24.41 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGT 132 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~ 132 (164)
...+.+.+.+...+.+++..-........+.+...+ +|.||+|++...+
T Consensus 272 ~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~--~D~iiigsP~y~~ 320 (414)
T 2q9u_A 272 RMALALLDGARSTGCETVLLEMTSSDITKVALHTYD--SGAVAFASPTLNN 320 (414)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHT--CSEEEEECCCBTT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHh--CCEEEEEcCccCc
Confidence 444445555555566555543333334455555555 9999999876553
No 182
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=61.00 E-value=26 Score=24.72 Aligned_cols=54 Identities=7% Similarity=0.058 Sum_probs=33.6
Q ss_pred ChhHHH--HHHHhhCCCCEEEEeccCCcc-cchhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERL--LEAIEDLKLDSLVMGSRGLGT-VRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I--~~~a~~~~~dlivlg~~~~~~-~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+..++| .+.+++.++|-+.+-.+.... ...--+-..-..|...++.||+++..+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYP 132 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 444443 555888999999887665433 221111123356778889999998643
No 183
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=60.97 E-value=37 Score=23.24 Aligned_cols=71 Identities=10% Similarity=0.095 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+...... .-.-..+...+.||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 24 AEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE--------HDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--------CHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------hHHHHHhhccCCCEEEEec
Confidence 467777888888888877765544444 344667777889999998654321 1122345567899988854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 96 ~ 96 (291)
T 3egc_A 96 E 96 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 184
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=60.89 E-value=24 Score=21.17 Aligned_cols=72 Identities=8% Similarity=0.075 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcC-CceEEEEecCChhHHHHHHHhh-CCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEe
Q 031195 81 IDALDLLDTASRQKE-ANIVAKIYWGDARERLLEAIED-LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~-~~~~~~~~~g~~~~~I~~~a~~-~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~ 157 (164)
....+.+...+...| ..+.. ..+..+++....+. ..+|+|++...-.. ..++ .....+-... .+||+++-
T Consensus 30 ~~~~~~l~~~L~~~g~~~v~~---~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~lt 102 (146)
T 4dad_A 30 ASRLAHLARLVGDAGRYRVTR---TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAEL---AAIEKLSRLHPGLTCLLVT 102 (146)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE---ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHH---HHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHhhCCCeEEEE---eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHH---HHHHHHHHhCCCCcEEEEe
Confidence 345555666666655 44332 34556666666666 78999999865322 1111 1234443333 48888875
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 103 ~~ 104 (146)
T 4dad_A 103 TD 104 (146)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 185
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=60.87 E-value=40 Score=23.66 Aligned_cols=62 Identities=6% Similarity=0.010 Sum_probs=37.6
Q ss_pred hhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 91 SRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 91 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+.+.|++++... ++..-.++ + ++|.+++|..+- ++............+.++...|++++=+.
T Consensus 156 L~~~gI~vtli~--dsa~~~~m---~--~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~ 220 (276)
T 1vb5_A 156 LEFSGIEFEVIT--DAQMGLFC---R--EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAET 220 (276)
T ss_dssp HHHTTCCEEEEC--GGGHHHHH---T--TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred HHHCCCCEEEEc--HHHHHHHH---c--cCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEeccc
Confidence 334578877644 33333333 3 599999998763 33333333334555677788999998543
No 186
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=60.21 E-value=38 Score=23.21 Aligned_cols=69 Identities=9% Similarity=0.130 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh-hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA-RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ....++.....++|-||+....... ...+. +.. +.||+++-.
T Consensus 27 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~-~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 27 GDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-------DELGA-LAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-------HHHHH-HHT-TSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-------HHHHH-HHc-CCCEEEEcC
Confidence 466777777888888776654444322 4555666667788988886543321 12232 344 788888754
No 187
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=60.10 E-value=24 Score=20.90 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv~~ 158 (164)
...+.+...+...|..+. .-...++.++.+++.++|+|++...-.. ..++ .....+-. ...+||+++-.
T Consensus 17 ~~~~~l~~~l~~~g~~v~----~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSD----MVHSAAQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHHHHHTTCEEE----EECSHHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHHHHHHCCCeEE----EECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEec
Confidence 444556666666665432 2223455566777888999999864322 1111 12333333 24588888754
No 188
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=59.78 E-value=8.9 Score=26.60 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=32.0
Q ss_pred HHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 114 AIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 114 ~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
.+++.+.|++|+.++..... .+.-+..++...+.|.+|+-..+
T Consensus 59 ~~~~~~pDfvI~isPN~a~P----GP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 59 IAEDFEPDFIVYGGPNPAAP----GPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHHHHCCSEEEEECSCTTSH----HHHHHHHHHHTSSSCEEEEEEGG
T ss_pred hhhhcCCCEEEEECCCCCCC----CchHHHHHHHhCCCCEEEEcCCc
Confidence 34788999999987765432 24457889999999999987544
No 189
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=59.18 E-value=39 Score=22.99 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcCCc-eEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEAN-IVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~-~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|.. +......++.. ..+++.....++|-||+.. .. .+ -+...+.||+++-
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~---------~~-~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FT---------IP-PNFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CC---------CC-TTCCCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hH---------HH-HHHhCCCCEEEEc
Confidence 56777788888888887 55433334443 3456777788999999875 11 11 2356678988885
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 93 ~~ 94 (277)
T 3hs3_A 93 SA 94 (277)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 190
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=58.85 E-value=25 Score=24.22 Aligned_cols=49 Identities=12% Similarity=-0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh-----------hHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA-----------RERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~-----------~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
....+.+.+.+.+.|.+++..-...-+ ...+.+...+ +|.||++++-..
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~--AD~iI~~sP~Yn 110 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIW--SEGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHH--CSEEEEEEECSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHH--CCEEEEEeCCCC
Confidence 345555666666667766654333322 5677778888 999999987654
No 191
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=58.75 E-value=26 Score=20.82 Aligned_cols=69 Identities=9% Similarity=0.136 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+...|..+. .-....+.++..++.++|+|++.. -. ...++ .....+-... .+||+++-..
T Consensus 15 ~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlvi~d~-~~-~~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVI----WAKNEQEAFTFLRREKIDLVFVDV-FE-GEESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHHHGGGTCEEE----EESSHHHHHHHHTTSCCSEEEEEC-TT-THHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEE----EECCHHHHHHHHhccCCCEEEEeC-CC-CCcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 445556666666665433 223345566777778999999986 32 22211 2234443333 4899888543
No 192
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=58.56 E-value=25 Score=20.52 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+.+.+...|..+.. ..+ .++.++..+..++|++++...-.+ ..+ -.....+-... .+|++++-..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 18 VFRSLLDSWFSSLGATTVL---AAD-GVDALELLGGFTPDLMICDIAMPR-MNG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESC-HHHHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHHHHHhCCceEEE---eCC-HHHHHHHHhcCCCCEEEEecCCCC-CCH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 4445566666666654432 233 445566777888999999864222 111 11234444333 4888888654
No 193
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=58.50 E-value=34 Score=24.60 Aligned_cols=33 Identities=9% Similarity=-0.054 Sum_probs=22.6
Q ss_pred EEEEeCC-----CccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 7 IGVALDF-----SPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 7 iLv~vd~-----s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+||-.+- ++.+..++..|.+++. +++++.+-+.
T Consensus 4 ~lv~~e~~~g~l~~~~~eal~aA~~La~----~V~av~~G~~ 41 (315)
T 1efv_A 4 TLVIAEHANDSLAPITLNTITAATRLGG----EVSCLVAGTK 41 (315)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHTTTS----EEEEEEEESC
T ss_pred EEEEEEccCCCcCHHHHHHHHHHHHhcC----cEEEEEECCc
Confidence 6776653 3457888888888763 7777766543
No 194
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=58.08 E-value=29 Score=21.07 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~ 158 (164)
...+.+...+...|..+. .-...++.++...+..+|+|++...-.+ ..++ .....+-.. ..+||+++-.
T Consensus 18 ~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNII----TFTSPLDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHHHHHTTTCEEE----EESCHHHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCeEE----EeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 444555666665565433 2233455667777788999999864322 1111 123444333 3588888753
No 195
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=57.90 E-value=53 Score=24.09 Aligned_cols=43 Identities=9% Similarity=-0.057 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVM 125 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivl 125 (164)
...+.++.+.+.+.. .+..+..|+....+ ...|...++-++.+
T Consensus 97 ~~~~~~l~~~l~~~k--PDvVi~~g~~~~~~~~~~aa~~~~IPv~h~ 141 (396)
T 3dzc_A 97 SKILLGMQQVLSSEQ--PDVVLVHGDTATTFAASLAAYYQQIPVGHV 141 (396)
T ss_dssp HHHHHHHHHHHHHHC--CSEEEEETTSHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHhcC--CCEEEEECCchhHHHHHHHHHHhCCCEEEE
Confidence 455666777776653 34445566554433 24567777776554
No 196
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=57.88 E-value=27 Score=20.72 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhh-cCCceEEEEecCChhHHHHHHHhh-CCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEE
Q 031195 82 DALDLLDTASRQ-KEANIVAKIYWGDARERLLEAIED-LKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIV 156 (164)
Q Consensus 82 ~~l~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~-~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv 156 (164)
...+.+...+.. .|.++. .-...++.++...+ ..+|+|++...-.+...++ .+...+-. ...+||+++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~----~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~l 87 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFI----EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIA 87 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEE----EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEE
T ss_pred HHHHHHHHHHHhccCccEE----EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEE
Confidence 444555566665 555433 22334455666777 8899999986533111111 12344433 345888888
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 88 s~~ 90 (140)
T 3lua_A 88 TKS 90 (140)
T ss_dssp ESC
T ss_pred eCC
Confidence 643
No 197
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=57.73 E-value=48 Score=23.57 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.+.. .+.+-.-+...+..++| .+.+++.++|-+++..+.......--+-..-..|...++.||+++..
T Consensus 71 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 71 IELLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3444444444432 23333333222444333 45688889999999866543322211112346688888999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 150 P 150 (304)
T 3l21_A 150 P 150 (304)
T ss_dssp H
T ss_pred c
Confidence 3
No 198
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=57.62 E-value=9.3 Score=18.64 Aligned_cols=26 Identities=8% Similarity=0.342 Sum_probs=19.8
Q ss_pred ceEEEEecC-ChhHHHHHHHhhCCCCE
Q 031195 97 NIVAKIYWG-DARERLLEAIEDLKLDS 122 (164)
Q Consensus 97 ~~~~~~~~g-~~~~~I~~~a~~~~~dl 122 (164)
.+..++..+ +..++|++|+++.+.|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 455555554 78999999999977774
No 199
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.39 E-value=42 Score=22.76 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+..... . ..-..+...++||+++-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~------~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P------QTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H------HHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H------HHHHHHHHCCCCEEEEec
Confidence 567777888888888877765544444 34567777788999999875433 1 122345667899988854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 200
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=57.36 E-value=36 Score=24.06 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+..+.......--+=..-..|...++.||+++..
T Consensus 58 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 136 (292)
T 3daq_A 58 ELILKTVIDLVDK-RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNV 136 (292)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 3444444444432 24444333333444443 45588889999988765433222111112345677777999999864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
+
T Consensus 137 P 137 (292)
T 3daq_A 137 P 137 (292)
T ss_dssp H
T ss_pred c
Confidence 4
No 201
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=56.75 E-value=45 Score=22.87 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--Ch--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+.+.+.+.+.|..+......+ ++ ....++.+...++|-||+.......... ..+. +. .++||+++
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~~-~~-~~iPvV~~ 93 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLKS-WV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THHH-HT-TTSCEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHHH-Hc-CCCCEEEe
Confidence 4667777788888888777655544 53 3345566666789999997554332221 2333 34 78999988
No 202
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=56.73 E-value=27 Score=20.28 Aligned_cols=71 Identities=7% Similarity=-0.008 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
...+.+.+.+...|..+. .-...++.++..++.++|+|++...-.+ ..++ .+...+-.. ..+||+++-.
T Consensus 14 ~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 14 AAAETFKELLEMLGFQAD----YVMSGTDALHAMSTRGYDAVFIDLNLPD-TSGL---ALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHHHHHHTTEEEE----EESSHHHHHHHHHHSCCSEEEEESBCSS-SBHH---HHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEE----EECCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhhccCCCCEEEEEC
Confidence 445556666666655332 2234455666777788999999865322 1111 133444443 4589988865
Q ss_pred CC
Q 031195 159 PS 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 86 ~~ 87 (127)
T 3i42_A 86 FA 87 (127)
T ss_dssp C-
T ss_pred Cc
Confidence 43
No 203
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=56.61 E-value=22 Score=22.27 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=28.1
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+...+..++.+.+.-++|++..+..-....-.+-+.+.+.++.||+++=+
T Consensus 71 y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~D 122 (141)
T 4e0q_A 71 YYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLN 122 (141)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEEC
Confidence 3445555556666778888877655321111112345555666788877743
No 204
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=56.37 E-value=20 Score=25.79 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=41.0
Q ss_pred HhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 90 ASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
.+.+.+.-+=..-..+ ...++|++.|++.+..+|+-.+.+........+......+.++.++||.+-
T Consensus 21 ~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 21 FARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp HHHHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 3334444443333334 789999999999999998876654322211112233455677889999764
No 205
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=56.12 E-value=29 Score=20.55 Aligned_cols=70 Identities=6% Similarity=0.029 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv~~ 158 (164)
...+.+...+...|..+ ..-...++.++..++..+|++++...-.. ..+. .....+-. ...+||+++-.
T Consensus 18 ~~~~~l~~~L~~~g~~v----~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHI----ISADSGGQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHHHHHHHHHHHTTCEE----EEESSHHHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHCCeEE----EEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEEC
Confidence 44455566666555533 22334456667777788999999865322 1111 23444443 24589998854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 90 ~ 90 (142)
T 3cg4_A 90 K 90 (142)
T ss_dssp T
T ss_pred C
Confidence 3
No 206
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=55.62 E-value=45 Score=22.54 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..+.+.+.+.+...|.+++..-.. +.-.+...+...+ +|.||++++-..
T Consensus 46 ~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~--aD~iv~~~P~y~ 95 (218)
T 3rpe_A 46 LTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLW--ADTIIYQMPAWW 95 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHh--CCEEEEECChHh
Confidence 455566777777777787765555 3334566677777 999999987543
No 207
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=55.50 E-value=13 Score=24.84 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=27.3
Q ss_pred CCceEEEEeCCCccHH-HHHHHHHHhcCCCCCeEEEEE
Q 031195 3 GDRKIGVALDFSPSSK-FALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~-~al~~a~~la~~~~~~l~ll~ 39 (164)
..++|++++.|+-... .+++..-.|.+ .+..++++-
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~ 42 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFV 42 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEE
Confidence 4679999999998888 78887777654 467766554
No 208
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=55.37 E-value=30 Score=20.45 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh-CCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIED-LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVK 157 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~-~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~ 157 (164)
...+.+...+...|..+ ......++.++..++ ..+|++++...-.+ ..+. .....+-... .+|++++-
T Consensus 26 ~~~~~l~~~L~~~g~~v----~~~~~~~~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 26 SHATLIQYHLNQLGAEV----TVHPSGSAFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHHHHHHHTTCEE----EEESSHHHHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCEE----EEeCCHHHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEE
Confidence 44455556665555533 222234455566666 78999999864322 1111 1234443333 48998886
No 209
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=55.10 E-value=48 Score=22.69 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC--ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG--DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......+ +....+.+.....++|-||+...... .-.-..+...+.||+++-.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 26 SQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN--------DPRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC--------cHHHHHHhhCCCCEEEECC
Confidence 5777788888888887766543332 33456777777788999988643211 1122345567899988854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 98 ~ 98 (288)
T 3gv0_A 98 S 98 (288)
T ss_dssp C
T ss_pred c
Confidence 3
No 210
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=54.91 E-value=30 Score=20.35 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~ 130 (164)
-..+++++.+.+.|++++..... ++... .... +|++++|..-.
T Consensus 18 ~l~~k~~~~~~~~gi~~~i~a~~~~~~~~----~~~~--~Dvil~~pqv~ 61 (106)
T 1e2b_A 18 LLVSKMRAQAEKYEVPVIIEAFPETLAGE----KGQN--ADVVLLGPQIA 61 (106)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEECSSSTTH----HHHH--CSEEEECTTSG
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHHHHHh----hccC--CCEEEEccchh
Confidence 44567888888889987764443 33333 2345 89999986544
No 211
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=54.40 E-value=25 Score=21.28 Aligned_cols=62 Identities=8% Similarity=0.173 Sum_probs=35.0
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc--CCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR--GLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~--~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
+...++..|.++. ...+..++-++.+++..+|++++... +.+++. +++ .++..++||+++-.
T Consensus 24 l~~~L~~~G~~v~---~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~e------l~~-~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 24 IEDTLCELGHEVA---ATASRMQEALDIARKGQFDIAIIDVNLDGEPSYP------VAD-ILAERNVPFIFATG 87 (123)
T ss_dssp HHHHHHHHCCCCC---BCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHH------HHH-HHHHTCCSSCCBCT
T ss_pred HHHHHHHCCCEEE---EEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHH------HHH-HHHcCCCCEEEEec
Confidence 4444455565432 12333445566778889999999753 222221 233 44556789887753
No 212
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=54.25 E-value=42 Score=21.83 Aligned_cols=49 Identities=6% Similarity=-0.058 Sum_probs=27.8
Q ss_pred HHHHHHHHHH-hhhcCCceEEEEecCC-------------hhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTA-SRQKEANIVAKIYWGD-------------ARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~-~~~~~~~~~~~~~~g~-------------~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+...+.+.+. +.+.|.+++..-...- ....+.+...+ +|.||+|++-..
T Consensus 19 ~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~--aD~ii~~sP~y~ 81 (197)
T 2vzf_A 19 AKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCN--ADGLIVATPIYK 81 (197)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHH--CCEEEEEeCccC
Confidence 3444555555 5555666655433321 23444555566 999999987543
No 213
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=54.18 E-value=50 Score=22.68 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec--CChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW--GDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~--g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+.+.+.+.+.|..+...... +++.+ ..++.+...++|-||+.......... .-.-+...+.||+.+
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~------~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 19 TSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSK------SLQRANKLNIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHH------HHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH------HHHHHHHCCCCEEEE
Confidence 466677778888888877764433 34433 45556667789999986543332221 122345568999988
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 93 ~~~ 95 (297)
T 3rot_A 93 DTR 95 (297)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 214
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=53.92 E-value=23 Score=23.95 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=21.0
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
..++.++.|++.- ..+++.+-.+ +..+..++|..
T Consensus 5 ~~~livAlD~~~~-~~a~~~~~~~----~~~~~~ikvg~ 38 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITAAVSV----GNEVDVIEAGT 38 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHHH----GGGCSEEEECH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHhh----CCCceEEEECH
Confidence 4589999999764 3355555443 44455666633
No 215
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=53.58 E-value=32 Score=20.26 Aligned_cols=69 Identities=6% Similarity=0.043 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc----ccchhcccchhHHHhhc-CCccEEEE
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG----TVRRIILGSVSNYVMTH-APCPVTIV 156 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~----~~~~~~~~s~~~~i~~~-~~~pVliv 156 (164)
...+.+...+...|..+. .-...++.++..++..+|++++...-.+ ...++ .....+-.. ..+||+++
T Consensus 14 ~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~l 86 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVI----TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLF 86 (140)
T ss_dssp HHHHHHHHHHTTTSSEEE----EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHhCCcEEE----EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEE
Confidence 445556666666665433 2233455666777788999999865320 11111 123334333 35888887
Q ss_pred e
Q 031195 157 K 157 (164)
Q Consensus 157 ~ 157 (164)
-
T Consensus 87 s 87 (140)
T 2qr3_A 87 T 87 (140)
T ss_dssp E
T ss_pred E
Confidence 4
No 216
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=53.38 E-value=9.6 Score=22.95 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=25.8
Q ss_pred CceEEEEeCCCccH----HHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSS----KFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~----~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
||++++.+..+++. +.+++.|...+. .+..+.++...+.
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a-~~~~v~vff~~DG 43 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSA-LTDDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHT-TCSCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEehHH
Confidence 57899999988764 556766666543 3457766665444
No 217
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=53.29 E-value=36 Score=20.72 Aligned_cols=71 Identities=6% Similarity=0.001 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~ 157 (164)
....+.+.+.+...|..+. .-...++.++.+++.++|+|++...-.+ ..++ .+...+-.. ..+||+++-
T Consensus 17 ~~~~~~l~~~L~~~g~~v~----~~~~~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 17 PTQAEHLKHILEETGYQTE----HVRNGREAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHHHHHHHHTTTCEEE----EESSHHHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEE----EeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEE
Confidence 3455556666666665432 2233455666777889999999865322 1111 123444333 358898886
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 89 ~~ 90 (154)
T 3gt7_A 89 IL 90 (154)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 218
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=53.26 E-value=41 Score=24.95 Aligned_cols=24 Identities=4% Similarity=-0.002 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+....+|+++|
T Consensus 180 ~~eRIar~AFe~A~~rrkkVT~v~ 203 (375)
T 3vmk_A 180 EIRRIAKIAFESAQGRRKKVTSVD 203 (375)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEE
Confidence 467889999999988888888887
No 219
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=53.22 E-value=72 Score=24.63 Aligned_cols=78 Identities=8% Similarity=-0.002 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhC----CCCEEEEeccCCcccchhcccchhHHHhhcCCc
Q 031195 77 VKTDIDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDL----KLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPC 151 (164)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~----~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~ 151 (164)
.+-.....+.+...-....+.++..-..- .-.+++.+.+++. ++|.||+-.+.-+... ..-.+++..++
T Consensus 25 ~~v~~~~~~~~~~l~~~~~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~------~~i~~l~~l~~ 98 (500)
T 4f2d_A 25 RQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAK------MWINGLTMLNK 98 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTH------HHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHH------HHHHHHHhcCC
Q ss_pred cEEEEeCCC
Q 031195 152 PVTIVKDPS 160 (164)
Q Consensus 152 pVliv~~~~ 160 (164)
|||++....
T Consensus 99 PvL~~~~q~ 107 (500)
T 4f2d_A 99 PLLQFHTQF 107 (500)
T ss_dssp CEEEEECCS
T ss_pred CEEEEeCCC
No 220
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=53.05 E-value=55 Score=22.83 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=35.1
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+.|.+.+++.+.|+|+.-....+...+...+..+...++..+.|++...
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~e 186 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWE 186 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEec
Confidence 44566778888999999865555555666666666667777777777663
No 221
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=52.94 E-value=41 Score=23.13 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=31.0
Q ss_pred HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 109 ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
.+.++.+.+.+.|.|.+|.+..-..... -.+.+ -++..+.|+++.|...
T Consensus 26 ~~~l~~~~~~GtDaI~vGgs~gvt~~~~--~~~v~-~ik~~~~Piil~p~~~ 74 (235)
T 3w01_A 26 DDDLDAICMSQTDAIMIGGTDDVTEDNV--IHLMS-KIRRYPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHHTSSCSEEEECCSSCCCHHHH--HHHHH-HHTTSCSCEEEECCCS
T ss_pred HHHHHHHHHcCCCEEEECCcCCcCHHHH--HHHHH-HhcCcCCCEEEecCCH
Confidence 3456667788999999997543322221 12333 3444789999998754
No 222
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=52.74 E-value=53 Score=24.51 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+....+|+++|
T Consensus 187 ~~eRIar~AFe~A~~rrkkVT~v~ 210 (390)
T 3u1h_A 187 EIERIIRKAFELALTRKKKVTSVD 210 (390)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHhHHHHHHHHHHHHcCCceEEEE
Confidence 467889999999988888888887
No 223
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=52.52 E-value=64 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.042 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHhcCCC-CCeEEEEEE
Q 031195 15 PSSKFALSWAVNNLLDK-GDTLYIIHI 40 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~-~~~l~ll~v 40 (164)
..++..+++|+++|+.. ..+|+++|=
T Consensus 144 ~~~eRiar~AF~~A~~r~rkkvt~v~K 170 (333)
T 1x0l_A 144 KASERIGRAALRIAEGRPRKTLHIAHK 170 (333)
T ss_dssp HHHHHHHHHHHHHHHTSTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 34778899999999987 567888883
No 224
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=52.43 E-value=72 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.001 Sum_probs=16.4
Q ss_pred CCCccHHHHHHHHHHhcCCCCCeEEEEEE
Q 031195 12 DFSPSSKFALSWAVNNLLDKGDTLYIIHI 40 (164)
Q Consensus 12 d~s~~~~~al~~a~~la~~~~~~l~ll~v 40 (164)
.|+..+--+...|..++.. +.++.++..
T Consensus 107 ~GsGKTT~~~~LA~~l~~~-g~~Vllvd~ 134 (425)
T 2ffh_A 107 QGSGKTTTAAKLALYYKGK-GRRPLLVAA 134 (425)
T ss_dssp TTSSHHHHHHHHHHHHHTT-TCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHc-CCeEEEeec
Confidence 3444455566666666543 667766654
No 225
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=52.14 E-value=61 Score=23.68 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhcCCceEEE-EecCC----hhHHHHHHHhhCCCCEEE-Eec
Q 031195 83 ALDLLDTASRQKEANIVAK-IYWGD----ARERLLEAIEDLKLDSLV-MGS 127 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~-~~~g~----~~~~I~~~a~~~~~dliv-lg~ 127 (164)
..+++.+.+.+.|+.+... -.+++ ..+.+.+.+++.++|.|| +|.
T Consensus 57 ~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 57 SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4455666666666654322 12333 356677778888999988 553
No 226
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=51.93 E-value=33 Score=20.22 Aligned_cols=70 Identities=10% Similarity=-0.014 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhcC-CceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKE-ANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~-~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+...| ..+. . ..+. ++.++...+..+|+|++...-.. ..+ -.....+-... .+||+++-..
T Consensus 25 ~~~~~l~~~L~~~g~~~v~--~-~~~~-~~a~~~l~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 25 NFKRDVATRLDALAIYDVR--V-SETD-DFLKGPPADTRPGIVILDLGGGD-LLG---KPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp HHHHHHHHHHHHTSSEEEE--E-ECGG-GGGGCCCTTCCCSEEEEEEETTG-GGG---STTHHHHHGGGTTCCEEEEESC
T ss_pred HHHHHHHHHHhhcCCeEEE--E-eccH-HHHHHHHhccCCCEEEEeCCCCC-chH---HHHHHHHHhhCCCCcEEEEeCC
Confidence 44555666666665 4433 1 1222 23344557788999999865322 111 12344444444 5899888653
No 227
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=51.80 E-value=36 Score=20.31 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEEeCC
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIVKDP 159 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv~~~ 159 (164)
..++.++...+..+|+|++...-.. ..++ .....+-. ...+||+++-..
T Consensus 40 ~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 40 NAIEAVPVAVKTHPHLIITEANMPK-ISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp SHHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred CHHHHHHHHHcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 3445556666678999999865322 1111 23444443 345899988653
No 228
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=51.64 E-value=58 Score=22.67 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++..+ ..++.....++|-||+.......... .-..+...++||+++-.
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~------~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 19 IDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSD------VLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHH------HHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHH------HHHHHHHCCCCEEEECC
Confidence 46777788888888887776554455533 34555555689999997543222111 12345567899999854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 93 ~ 93 (330)
T 3uug_A 93 L 93 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 229
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=51.61 E-value=22 Score=23.95 Aligned_cols=34 Identities=6% Similarity=-0.225 Sum_probs=26.2
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++|++++.++-.+.++.+..-.|.+ .+ .++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~ 52 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVV 52 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEE
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEE
Confidence 47999999999998888888877755 34 665554
No 230
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=51.56 E-value=54 Score=22.30 Aligned_cols=71 Identities=3% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++. ...+++.....++|-||+...... .-.-..+...+.||+++-.
T Consensus 29 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 29 PEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEECC
Confidence 567777888888888766543222222 345677777789999998543221 1123345667899988854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 101 ~ 101 (292)
T 3k4h_A 101 P 101 (292)
T ss_dssp C
T ss_pred C
Confidence 3
No 231
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=51.53 E-value=33 Score=27.08 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh-cCCccEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT-HAPCPVTIVK 157 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~-~~~~pVliv~ 157 (164)
..+...++..|.++.. +...-+.+.|++.+++.++|+|.+.......... ...+.+.+-. ..++||+|--
T Consensus 116 ~iva~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~--m~~~i~~Lr~~g~~i~ViVGG 186 (579)
T 3bul_A 116 NIVGVVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLITPSLDE--MVNVAKEMERQGFTIPLLIGG 186 (579)
T ss_dssp HHHHHHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHH--HHHHHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHH--HHHHHHHHHHcCCCCeEEEEc
Confidence 4455566777666543 3334689999999999999999998654433221 1223333322 2358887754
No 232
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=51.41 E-value=56 Score=23.38 Aligned_cols=75 Identities=11% Similarity=-0.035 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+..+...+.... .+.+-.-+.. +..++| .+.+++.++|-+.+..+.......--+=..-..|...++.||+++.
T Consensus 68 ~~v~~~~v~~~~g-rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 68 KEEVRRTVEYVHG-RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444444444432 2444333322 444433 4457788999999975543322211111234567777889999986
No 233
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=51.27 E-value=68 Score=23.31 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
...+.+.+.+...|..++..-........+.+...+ +|.+|+|++..+
T Consensus 268 ~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~gsp~~~ 315 (402)
T 1e5d_A 268 KMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISD--AGAVIVGSPTHN 315 (402)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHT--CSEEEEECCCBT
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCccC
Confidence 333445555555566665544444445566666666 999999986554
No 234
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=51.21 E-value=15 Score=23.80 Aligned_cols=39 Identities=8% Similarity=-0.116 Sum_probs=25.3
Q ss_pred CceEEEEeCC-CccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 4 DRKIGVALDF-SPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 4 ~~~iLv~vd~-s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
|.+|||.+.. +..+..+++...+.+...+..+.++.+.+
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 4466666543 33466777777776666677888777654
No 235
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=50.97 E-value=44 Score=21.41 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHH----HHHhhCCCCEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLL----EAIEDLKLDSLVMG 126 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~----~~a~~~~~dlivlg 126 (164)
..+.+.+.+.|.++......+|-.+.|. +.+++.++|+||+.
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3456666677887766555554434444 33432369998874
No 236
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=50.68 E-value=36 Score=24.93 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccc-hh----------cccchhHHHhhcCCcc
Q 031195 85 DLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVR-RI----------ILGSVSNYVMTHAPCP 152 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~-~~----------~~~s~~~~i~~~~~~p 152 (164)
..+.+.+.+.+.-+=..-..+ ...++|++.|++.+..+|+-.+.+..... .. .+...+..+.++.++|
T Consensus 10 ~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VP 89 (349)
T 3elf_A 10 AEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVN 89 (349)
T ss_dssp HHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCC
Confidence 334445555555444433444 78999999999999999887665432111 00 1223445677888999
Q ss_pred EEEEeCCC
Q 031195 153 VTIVKDPS 160 (164)
Q Consensus 153 Vliv~~~~ 160 (164)
|.+-=++.
T Consensus 90 VaLHlDHg 97 (349)
T 3elf_A 90 VALHTDHC 97 (349)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 97754443
No 237
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=50.51 E-value=41 Score=20.54 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhC--CCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDL--KLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~ 157 (164)
....+.+...+...|..+.. ...+.. +.++.+.+. ++|+|++...-.. ..++ .....+-... .+||+++-
T Consensus 46 ~~~~~~l~~~L~~~g~~v~~--~~~~~~-~al~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls 118 (157)
T 3hzh_A 46 VFTVKQLTQIFTSEGFNIID--TAADGE-EAVIKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMIS 118 (157)
T ss_dssp HHHHHHHHHHHHHTTCEEEE--EESSHH-HHHHHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEE--EECCHH-HHHHHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEe
Confidence 45556666767666654421 223443 444455555 6899999865322 1111 1234443333 48888876
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 119 ~~ 120 (157)
T 3hzh_A 119 AL 120 (157)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 238
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.33 E-value=33 Score=21.86 Aligned_cols=41 Identities=12% Similarity=-0.025 Sum_probs=24.0
Q ss_pred HHHHHhhhcCCceEEEEecCChhH----HHHHHHhhCCCCEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYWGDARE----RLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~----~I~~~a~~~~~dlivlg 126 (164)
.+.+.+++.|.++......+|-.+ +|.+.+++.++|+||+.
T Consensus 25 ~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 366667777887765544444333 33333432369998874
No 239
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=50.27 E-value=57 Score=22.47 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhcCCceEEEEec-C-------Ch--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCcc
Q 031195 83 ALDLLDTASRQKEANIVAKIYW-G-------DA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCP 152 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~-g-------~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~p 152 (164)
....+.+.+...|+.+...+.. | ++ ...+.+.+.+.++|.|.++.. ..+ .....+...+++|
T Consensus 133 ~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~ip 204 (273)
T 2qjg_A 133 DLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPAP 204 (273)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCCC
Confidence 4556666777777776654411 1 11 233446788899999988731 111 2345677777899
Q ss_pred EEEEeC
Q 031195 153 VTIVKD 158 (164)
Q Consensus 153 Vliv~~ 158 (164)
|+....
T Consensus 205 vva~GG 210 (273)
T 2qjg_A 205 VVVAGG 210 (273)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 988653
No 240
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=50.24 E-value=59 Score=22.32 Aligned_cols=70 Identities=7% Similarity=0.145 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......+ .....+++.....++|-||+....... ..-..+...+.||+++-.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECC
Confidence 5677778888888888776644432 445678888888899999996543321 122345667899988854
No 241
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=49.55 E-value=33 Score=23.47 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 110 RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 110 ~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
..++.+.+.+.|.|.+|.+..-..... ..+... ++..+.|+++.|...
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~--~~~v~~-ik~~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSK-VRRFLVPCVLEVSAI 69 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHHH--HHHHHH-HTTSSSCEEEECSCG
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHHH--HHHHHH-hhccCCCEEEeCCCH
Confidence 455556788999999997543222221 123333 344789999998653
No 242
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=49.55 E-value=65 Score=22.63 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++.. ...++.....++|-||+....... .....++...++||+++-.
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-------HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-------HHHHHHHHcCCCCEEEEcC
Confidence 4667778888888887776544444443 335666777789999986432221 1234556677889888754
No 243
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=49.51 E-value=10 Score=25.18 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=38.2
Q ss_pred HHhhhcCCceEEEEecCChhHHHHHHHhhCC--CCEEEEeccCC---cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 89 TASRQKEANIVAKIYWGDARERLLEAIEDLK--LDSLVMGSRGL---GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~--~dlivlg~~~~---~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
..+.+.|+.++... ++.. -...++.+ +|.+++|..+- +............-+.++.++|++|+=+
T Consensus 24 ~eL~~~gI~vtlI~--Dsa~---~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 24 YELVYDKIPSTLIT--DSSI---AYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHHHHTCCBEEBC--GGGH---HHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHcCCCEEEEe--chHH---HHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 33455688888643 3333 33344555 99999998763 2333322223334455667899999843
No 244
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.14 E-value=61 Score=22.22 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEe-cCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIY-WGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~-~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
...++.+.+.+.+.|..+..... .++.. ...++.+...++|-||+.......... .-.-+...++||+++-
T Consensus 20 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~------~~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 20 KRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD------TINKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH------HHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH------HHHHHHHCCCcEEEEC
Confidence 56777788888888887776332 23443 344555666789999986543322111 1223456789999886
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 94 ~~ 95 (305)
T 3g1w_A 94 SG 95 (305)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 245
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=49.11 E-value=58 Score=24.07 Aligned_cols=76 Identities=7% Similarity=0.051 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhc
Q 031195 15 PSSKFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQK 94 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (164)
..++..+++|+++|+....+|+++|=-..-. ....+++.+.+...++
T Consensus 174 ~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk---------------------------------t~glf~~~~~eva~ey 220 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNRRKKVTSVDKANVLY---------------------------------SSMLWRKVVNEVAREY 220 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTCH---------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCcccc---------------------------------cchHHHHHHHHHHHHC
Confidence 3467899999999998877888888322211 1135555666666554
Q ss_pred -CCceEEEEecCChhHHHHHHHhhCCCCEEEEe
Q 031195 95 -EANIVAKIYWGDARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 95 -~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg 126 (164)
+++++...+ ++..-.++..=. ++|.||..
T Consensus 221 pdV~~~~~~V-D~~~mqlv~~P~--~FDVivt~ 250 (366)
T 1vlc_A 221 PDVELTHIYV-DNAAMQLILKPS--QFDVILTT 250 (366)
T ss_dssp TTSEEEEEEH-HHHHHHHHHCGG--GCSEEEEC
T ss_pred CCceEEeeeH-HHHHHHHhhCcc--cceEEEEc
Confidence 566555432 333334444333 48877764
No 246
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=49.11 E-value=41 Score=24.52 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+..+.+|+++|
T Consensus 155 ~~eRiar~AFe~A~~rrkkVt~v~ 178 (337)
T 1w0d_A 155 GVRRVVADAFERARRRRKHLTLVH 178 (337)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEE
Confidence 467889999999988777888888
No 247
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=49.08 E-value=44 Score=23.40 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.9
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
-+.+.|++.+.+.++|+|.+...-..
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~t~ 192 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTVTQ 192 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCCCT
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecCC
Confidence 57999999999999999999865443
No 248
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=48.96 E-value=21 Score=23.49 Aligned_cols=49 Identities=14% Similarity=-0.009 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCC---------------------hhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGD---------------------ARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~---------------------~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+...+.+.+.+...|.+++..-.... ....+.+...+ +|.||+|++-..
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~--aD~ii~gsP~y~ 90 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEW--AEAIVFSSPTRF 90 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHH--CSEEEEEEEEET
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHH--CCEEEEEcCccc
Confidence 34555566666666776665443331 11234555566 999999987543
No 249
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=48.18 E-value=46 Score=20.52 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+...+...+. +.. +...+..++.++.+.+..+|+|++...-.+ ..+ -.+...+-...++|++++-.
T Consensus 36 ~~~~~l~~~L~~~~~-~~~-v~~~~~~~~al~~l~~~~~dlvilD~~l~~-~~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 36 FMRMVLKDIIDSQPD-MKV-VGFAKDGLEAVEKAIELKPDVITMDIEMPN-LNG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp HHHHHHHHHHHTSTT-EEE-EEEESSHHHHHHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHHHHhcCCC-eEE-EEecCCHHHHHHHhccCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCceEEEEec
Confidence 444555666655432 221 222233344555666667999999864322 111 12345555555688888754
No 250
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=47.89 E-value=38 Score=19.45 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh-cCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT-HAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~-~~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+ .++.++......+|++++...-.+ ..++ .....+-. ...+|++++-.
T Consensus 14 ~~~~~l~~~l~~~~~~v~---~~~~-~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 14 GIRILLNEVFNKEGYQTF---QAAN-GLQALDIVTKERPDLVLLDMKIPG-MDGI---EILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHHHHHHHHHHTTTCEEE---EESS-HHHHHHHHHHHCCSEEEEESCCTT-CCHH---HHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHHHHCCcEEE---EeCC-HHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCCEEEEEc
Confidence 444555555555555432 2233 344555566678999999854322 1111 12344433 23588888754
No 251
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=47.84 E-value=94 Score=24.00 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=26.2
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
+++++++.|.-.|.-++..+.+. .+.+++++|+...
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCC
Confidence 68999999987777666555442 3578999998654
No 252
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=47.78 E-value=68 Score=22.35 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=14.2
Q ss_pred CCCCceEEEEeCCCccHHHHHHHHHH
Q 031195 1 MAGDRKIGVALDFSPSSKFALSWAVN 26 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~~~~al~~a~~ 26 (164)
|.|..++.|++|.+.. ..+++.+-.
T Consensus 1 ~~m~~~LivALD~~~~-~~al~l~~~ 25 (259)
T 3tfx_A 1 MVMDRPVIVALDLDNE-EQLNKILSK 25 (259)
T ss_dssp ---CCCEEEECCCSCH-HHHHHHHHT
T ss_pred CCCCCCeEEEeCCCCH-HHHHHHHHH
Confidence 4445789999999763 334444433
No 253
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=47.76 E-value=51 Score=20.84 Aligned_cols=70 Identities=6% Similarity=0.003 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh-cCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT-HAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~-~~~~pVliv~~~ 159 (164)
...+.+...+...|..+ ..-...++.++......+|+|++...-.+ ..++ .....+-. ...+||+++-..
T Consensus 18 ~~~~~l~~~L~~~g~~v----~~~~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 18 VFAGTLARGLERRGYAV----RQAHNKDEALKLAGAEKFEFITVXLHLGN-DSGL---SLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHHHHHHTTCEE----EEECSHHHHHHHHTTSCCSEEEECSEETT-EESH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEE----EEeCCHHHHHHHHhhCCCCEEEEeccCCC-ccHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 44455556666656433 22233445566778888999999754221 1111 12344433 335899888643
No 254
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=47.74 E-value=35 Score=24.57 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=32.8
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCC--cccchhcccchhHHHhhcCCccEEEEeC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGL--GTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~--~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+..++++..++ +|+||+|.... +-...+....+.+.|.+ + |++.|.+
T Consensus 172 ~a~p~vl~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~Al~~-s--~kV~v~n 221 (311)
T 3c3d_A 172 SISPKVLEAFEK--EENILIGPSNPITSIGPIISLPGMRELLKK-K--KVVAVSP 221 (311)
T ss_dssp CCCHHHHHHHHH--CCEEEECSSCTTTTSHHHHHSTTHHHHHHT-S--EEEEECC
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHHhhhcCchhHHHHHHc-C--CEEEEcc
Confidence 456789999999 99999995432 22334556777777544 4 7776655
No 255
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=47.72 E-value=61 Score=21.75 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEe--cCChhH--HHHHHHhhCC-CCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIY--WGDARE--RLLEAIEDLK-LDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~--~g~~~~--~I~~~a~~~~-~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
....+.+.+.+.+.|..+..... .++..+ ..++.....+ +|-||+.......... .-..+...+.||++
T Consensus 16 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~------~~~~~~~~~ipvV~ 89 (276)
T 3ksm_A 16 RQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTP------SVAQYRARNIPVLV 89 (276)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHH------HHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHH------HHHHHHHCCCcEEE
Confidence 56677788888888887765442 234432 3444455556 9999997543222111 12345667899999
Q ss_pred EeC
Q 031195 156 VKD 158 (164)
Q Consensus 156 v~~ 158 (164)
+-.
T Consensus 90 ~~~ 92 (276)
T 3ksm_A 90 VDS 92 (276)
T ss_dssp ESS
T ss_pred Eec
Confidence 854
No 256
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=47.58 E-value=47 Score=24.04 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhcCCceEEEEecCC----hhHHHHHHHhhCCCCEEE-EeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGD----ARERLLEAIEDLKLDSLV-MGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~----~~~~I~~~a~~~~~dliv-lg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..+++.+.+.+.|+++......++ ..+.+ +.+++.++|.|| +|...- .+++..+......|++.||
T Consensus 49 ~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv--------~D~aK~vA~~~~~p~i~IP 119 (354)
T 3ce9_A 49 FGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKA--------IDAVKYMAFLRKLPFISVP 119 (354)
T ss_dssp HHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHH--------HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHH--------HHHHHHHHhhcCCCEEEec
Confidence 456677777777777654331222 24555 667778899887 553221 1233333333468999998
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 120 TT~ 122 (354)
T 3ce9_A 120 TST 122 (354)
T ss_dssp SCC
T ss_pred Ccc
Confidence 654
No 257
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=47.56 E-value=65 Score=24.38 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhH----HHHHHHhhCCCCEEE-EeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARE----RLLEAIEDLKLDSLV-MGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~----~I~~~a~~~~~dliv-lg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..+++.+.+...|+++...+..|++.. .+.+.+++ ++|+|| +|...- .+++..+......|++.||
T Consensus 106 ~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv--------iD~AK~iA~~~giP~I~IP 176 (450)
T 1ta9_A 106 CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT--------MDSAKYIAHSMNLPSIICP 176 (450)
T ss_dssp THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH--------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH--------HHHHHHHHHhcCCCEEEEe
Confidence 456666777777777754455565433 33344555 889877 553221 1233333344578999999
Q ss_pred CCC
Q 031195 158 DPS 160 (164)
Q Consensus 158 ~~~ 160 (164)
...
T Consensus 177 TTA 179 (450)
T 1ta9_A 177 TTA 179 (450)
T ss_dssp SSC
T ss_pred CCC
Confidence 753
No 258
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=47.54 E-value=42 Score=19.83 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
...+.+.+.+... +.. ..-...++.++.+.+.++|+|++...-.+ ..+ -.....+-.. ..+||+++-.
T Consensus 14 ~~~~~l~~~l~~~---~~v--~~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 14 FSRIELKNFLDSE---YLV--IESKNEKEALEQIDHHHPDLVILDMDIIG-ENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHHHHHHHHHTTT---SEE--EEESSHHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred HHHHHHHHHHHhc---ceE--EEeCCHHHHHHHHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHcCcccCCCCEEEEec
Confidence 3444555555543 222 22233445556666678999999864322 111 1234555444 4589988864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 85 ~ 85 (140)
T 3n53_A 85 S 85 (140)
T ss_dssp C
T ss_pred C
Confidence 3
No 259
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=47.51 E-value=41 Score=19.78 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhh-cCCc-eEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEE
Q 031195 82 DALDLLDTASRQ-KEAN-IVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIV 156 (164)
Q Consensus 82 ~~l~~~~~~~~~-~~~~-~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv 156 (164)
...+.+...+.. .|.. +.. ....++.++..++..+|+|++...-.+ ..+ -.....+-. ...+||+++
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~----~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~ 90 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKI----AYNPFDAGDLLHTVKPDVVMLDLMMVG-MDG---FSICHRIKSTPATANIIVIAM 90 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEE----ECSHHHHHHHHHHTCCSEEEEETTCTT-SCH---HHHHHHHHTSTTTTTSEEEEE
T ss_pred HHHHHHHHHHHhccCccEEEE----ECCHHHHHHHHHhcCCCEEEEecccCC-CcH---HHHHHHHHhCccccCCcEEEE
Confidence 444555666665 5655 322 223455566677778999999865322 111 123444443 245888887
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 91 s~~ 93 (143)
T 3cnb_A 91 TGA 93 (143)
T ss_dssp ESS
T ss_pred eCC
Confidence 543
No 260
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=47.40 E-value=43 Score=19.90 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv~~ 158 (164)
...+.+...+...|..+.. ..-...++.++.+.+.++|+|++...-.. ..+ -.....+-. ...+||+++-.
T Consensus 16 ~~~~~l~~~L~~~~~~~~v--~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQL--EFVDNGAKALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEE--EEESSHHHHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHHHHHHhcCCCeeE--EEECCHHHHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEeC
Confidence 4455566666666665433 23333455566777888999999865322 111 113344433 23589998865
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 90 ~ 90 (144)
T 3kht_A 90 N 90 (144)
T ss_dssp T
T ss_pred C
Confidence 3
No 261
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=47.22 E-value=42 Score=19.82 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+. ++.++.....++|++++...-.+ ..++ .....+-....+||+++-.
T Consensus 15 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvllD~~l~~-~~g~---~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 15 DNCQKLKGFLEEKGISID---LAYNC-EEAIGKIFSNKYDLIFLEIILSD-GDGW---TLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp HHHHHHHHHHHTTTCEEE---EESSH-HHHHHHHHHCCCSEEEEESEETT-EEHH---HHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEE---EECCH-HHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHccCCCCCEEEEEc
Confidence 344455555555554432 22333 44556667778999999854322 1111 1334444334789888854
No 262
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=47.08 E-value=31 Score=23.70 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=31.4
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...+++.+.+.++|+|.+|-+........+ .....+ ++.+.|+++.+..
T Consensus 22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~~--~~v~~i-r~~~~Pivl~~y~ 70 (234)
T 2f6u_A 22 TDEIIKAVADSGTDAVMISGTQNVTYEKAR--TLIEKV-SQYGLPIVVEPSD 70 (234)
T ss_dssp CHHHHHHHHTTTCSEEEECCCTTCCHHHHH--HHHHHH-TTSCCCEEECCSS
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHh-cCCCCCEEEecCC
Confidence 456778888899999999964322233221 233333 4467999998754
No 263
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=46.73 E-value=65 Score=23.76 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHhcCCCCC-eEEEEEE
Q 031195 15 PSSKFALSWAVNNLLDKGD-TLYIIHI 40 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~-~l~ll~v 40 (164)
..++..+++|+++|+..+. +|+++|=
T Consensus 166 ~~~eRIar~AFe~A~~r~~kkVt~v~K 192 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRERKHVTSATK 192 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3567889999999988655 6998883
No 264
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=46.66 E-value=20 Score=26.79 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=39.6
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPSF 161 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~~ 161 (164)
.-.+.+.+.+++.++|-||.-..............+...+.++.+.|+|.+-.+..
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~~ 376 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQA 376 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECSS
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 45778889999999999998766555444333333444666788999999865543
No 265
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=46.59 E-value=44 Score=23.56 Aligned_cols=49 Identities=12% Similarity=-0.243 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh------------hHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA------------RERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~------------~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
....+.+.+.+.+.|.+++..-..+-+ ...+.+...+ +|.||++++-..
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~--ADgiV~aSP~Yn 135 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEW--SEGQVWCSPERH 135 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHH--CSEEEEEEEEET
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHH--CCeEEEEcCccc
Confidence 345555666666667666653332211 5667777888 999999987543
No 266
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=46.15 E-value=53 Score=24.23 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+....+|+++|
T Consensus 168 ~~eRIar~AFe~A~~rrkkVT~v~ 191 (361)
T 3udu_A 168 EIERIARIAFESARIRKKKVHLID 191 (361)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEE
Confidence 467889999999988778888888
No 267
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=46.12 E-value=68 Score=23.60 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+....+|+++|
T Consensus 164 ~~eRIar~AFe~A~~rrkkVt~v~ 187 (359)
T 2y3z_A 164 EVERVARVAFEAARKRRKHVVSVD 187 (359)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEE
Confidence 467889999999988877888888
No 268
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=46.08 E-value=40 Score=19.23 Aligned_cols=69 Identities=9% Similarity=0.080 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+...+...|..+. .....++..+......+|++++...-.+ ..++ .....+-...++|++++-.
T Consensus 13 ~~~~~l~~~L~~~~~~v~----~~~~~~~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~ 81 (122)
T 1zgz_A 13 VTQARLQSYFTQEGYTVS----VTASGAGLREIMQNQSVDLILLDINLPD-ENGL---MLTRALRERSTVGIILVTG 81 (122)
T ss_dssp HHHHHHHHHHHHTTCEEE----EESSHHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHTTCCCEEEEEES
T ss_pred HHHHHHHHHHHHCCCeEE----EecCHHHHHHHHhcCCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEEC
Confidence 334445555555554432 2223455667777788999999854322 1111 1344444444588888754
No 269
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=45.87 E-value=66 Score=21.64 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...+.+...+...+.. +.......+.++.+....+|+|++...-.. ..+ -.....+-....+||+++-..
T Consensus 48 ~~~~~l~~~L~~~g~~----v~~~~~~~~al~~~~~~~~DlvllD~~lp~-~~G---~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 48 DIANVLRMDLTDAGYV----VDHADSAMNGLIKAREDHPDLILLDLGLPD-FDG---GDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHHHHHTTTCE----EEEESSHHHHHHHHHHSCCSEEEEECCSCH-HHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHHHCCCE----EEEeCCHHHHHHHHhcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCCCCCEEEEECC
Confidence 4455556666665542 223333445566677788999999854322 111 123455545556899988643
No 270
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=45.86 E-value=39 Score=24.01 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=42.3
Q ss_pred HhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCccc-ch-hcccchhHHHhh--cCCccEEEE
Q 031195 90 ASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTV-RR-IILGSVSNYVMT--HAPCPVTIV 156 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~-~~-~~~~s~~~~i~~--~~~~pVliv 156 (164)
.+.+.+.-+=..-..+ ...++|++.|++.+..+|+-.+.+.... .+ ..+......+.+ +.++||.+-
T Consensus 15 ~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 15 KALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp HHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3333444333333334 7899999999999999998766543222 11 123445566777 888999874
No 271
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=45.73 E-value=41 Score=19.22 Aligned_cols=69 Identities=6% Similarity=0.111 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+...+...|..+. ..+......+.....++|++++...-.+ ..++ .....+-....+|++++-.
T Consensus 14 ~~~~~l~~~l~~~~~~v~----~~~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~ 82 (123)
T 1xhf_A 14 VTRNTLKSIFEAEGYDVF----EATDGAEMHQILSEYDINLVIMDINLPG-KNGL---LLARELREQANVALMFLTG 82 (123)
T ss_dssp HHHHHHHHHHHTTTCEEE----EESSHHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCEEEEEES
T ss_pred HHHHHHHHHHhhCCcEEE----EeCCHHHHHHHHhcCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCcEEEEEC
Confidence 344455555555555432 2223345556667788999999864322 1111 1234444445688888754
No 272
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=45.67 E-value=70 Score=21.90 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|..+..... ++.. ...++.....++|-||+.......... .-..+...+.||+.+-
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~------~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 18 QTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSA------IVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHH------HHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHH------HHHHHHHCCCcEEEeC
Confidence 46667777777777776654322 3443 334555666789999987543321111 1223556789999986
No 273
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=45.57 E-value=44 Score=19.47 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+.+.|..+.. ...+.. +..+..++.++|++++...-.+ ..++ .....+-... .+|++++-..
T Consensus 12 ~~~~~l~~~L~~~g~~v~~--~~~~~~-~a~~~~~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 12 LAIAAIRNLLIKNDIEILA--ELTEGG-SAVQRVETLKPDIVIIDVDIPG-VNGI---QVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHHHHHHHTTEEEEE--EESSST-THHHHHHHHCCSEEEEETTCSS-SCHH---HHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHHHHHHhhCCcEEEE--EcCCHH-HHHHHHHhcCCCEEEEecCCCC-CChH---HHHHHHHhcCCCCeEEEEeCC
Confidence 4445566666666633322 222333 3344555667999999865322 1111 1234444443 4888887543
No 274
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=45.20 E-value=70 Score=24.01 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+....+|+++|
T Consensus 208 ~~eRIar~AFe~A~~rrkkVT~v~ 231 (405)
T 3r8w_A 208 EIDRIARVAFETARKRRGKLCSVD 231 (405)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEE
Confidence 467889999999988778888887
No 275
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=45.07 E-value=68 Score=21.60 Aligned_cols=69 Identities=6% Similarity=-0.015 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHH-HhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNY-VMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~-i~~~~~~pVliv~ 157 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+.... .. .-. .+...+.||+++-
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---------~~-~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 24 TLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN---------EN-IIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG---------HH-HHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---------hH-HHHHHHHcCCCCEEEEe
Confidence 567778888888888887765444444 3456777777899999996511 11 123 4556689998875
Q ss_pred CC
Q 031195 158 DP 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 276
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=45.03 E-value=84 Score=22.59 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=28.0
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+.+.|+.+.. . ..-...++.+..++.++|++|+-..+
T Consensus 55 v~~~A~~~gIpv~~-~-~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 55 VKTLALEHNVPVYQ-P-ENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHTTCCEEC-C-SCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHcCCCEEc-c-CcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 45666777887632 1 11123578899999999999997664
No 277
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=44.98 E-value=47 Score=19.65 Aligned_cols=70 Identities=9% Similarity=0.051 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHh--hCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIE--DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+..+ .++... ...+|+|++...-.. ..++ .....+-... .+||+++-.
T Consensus 14 ~~~~~l~~~l~~~g~~v~---~~~~~~~-a~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 14 TILQNIKFLLEIDGNEVL---TASSSTE-GLRIFTENCNSIDVVITDMKMPK-LSGM---DILREIKKITPHMAVIILTG 85 (143)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSHHH-HHHHHHHTTTTCCEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHhCCceEE---EeCCHHH-HHHHHHhCCCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEEC
Confidence 444555666666554322 2234444 444444 568999999865322 1111 1233343333 488888764
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 86 ~ 86 (143)
T 3jte_A 86 H 86 (143)
T ss_dssp T
T ss_pred C
Confidence 3
No 278
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=44.53 E-value=86 Score=22.75 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=27.0
Q ss_pred eEEEEeCC----CccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 6 KIGVALDF----SPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 6 ~iLv~vd~----s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
...+++.. ....+..++.|.+.|+..+....++...+.
T Consensus 16 ~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdph 57 (338)
T 2x0k_A 16 NSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPH 57 (338)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSC
T ss_pred CeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 34455532 445789999999999888888777776554
No 279
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=44.31 E-value=59 Score=21.35 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHh---hCCCCEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIE---DLKLDSLVMG 126 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~~~~dlivlg 126 (164)
..+...+++.|.++.....-.|-.+.|.+..+ ..++|+||..
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 34566777778777655444444444444332 2469998874
No 280
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=44.19 E-value=45 Score=19.61 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcc-cchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGT-VRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~-~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+...|..+. ...+ .++.++..++..+|+|++...-.+. ..++ .....+-... .+||+++-..
T Consensus 17 ~~~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQ---CFAS-AESFMRQQISDDAIGMIIEAHLEDKKDSGI---ELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp HHHHHHHHHHTTSSSEEE---EESS-HHHHTTSCCCTTEEEEEEETTGGGBTTHHH---HHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHHHHHCCcEEE---EeCC-HHHHHHHHhccCCCEEEEeCcCCCCCccHH---HHHHHHHhCCCCCCEEEEEcC
Confidence 455566666666665433 1233 4455566677789999998542220 1111 1234443333 4888888543
No 281
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=44.06 E-value=79 Score=22.02 Aligned_cols=72 Identities=4% Similarity=-0.017 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEE-ecCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKI-YWGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~-~~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|+++.... ..+++.. ..++.....++|.||+......... ...+ .+....+||+.+-
T Consensus 19 ~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~-----~~~~-~a~~~gipvV~~d 92 (316)
T 1tjy_A 19 TSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-----PALK-RAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTH-----HHHH-HHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHHH-HHHHCcCEEEEec
Confidence 4556666777777776655421 2345543 3455555678999998754332211 1122 3455789999885
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 93 ~ 93 (316)
T 1tjy_A 93 S 93 (316)
T ss_dssp S
T ss_pred C
Confidence 3
No 282
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=44.03 E-value=43 Score=18.95 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
..+.+...+...|..+. ...+. ++.++......+|++++...-.+ ..++ .....+-...++|++++-..
T Consensus 13 ~~~~l~~~l~~~~~~v~---~~~~~-~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 13 ISDIIKFNMTKEGYEVV---TAFNG-REALEQFEAEQPDIIILDLMLPE-IDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHHhcCcEEE---EecCH-HHHHHHHHhCCCCEEEEeccCCC-CCHH---HHHHHHHhCCCCCEEEEecC
Confidence 33444555555555432 22333 34445556668999999854322 1111 13344444456898887543
No 283
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=44.01 E-value=19 Score=25.61 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=37.4
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEe
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~ 157 (164)
...++|++.|++.+..+|+-.+.+.....+ ..+......+.++.++||.+-=
T Consensus 29 e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValHl 81 (286)
T 1gvf_A 29 ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL 81 (286)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEEc
Confidence 789999999999999998877665322111 1234567777888899987743
No 284
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=43.82 E-value=30 Score=22.53 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
..+.++|.++.|..+...++ +++.|+..|+++..+.-.
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEECC
Confidence 34679999999999988776 566788899998887643
No 285
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=43.67 E-value=60 Score=22.31 Aligned_cols=49 Identities=12% Similarity=0.338 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..+.+..+.|.+.|+..-. ..++...+++++..-+.+++.+|++....+
T Consensus 103 yqr~r~e~vc~~~gl~~~~-PLW~~d~~~Ll~e~i~~G~~aiiv~v~~~g 151 (237)
T 3rjz_A 103 YQRKRIEKVAKELGLEVYT-PAWGRDAKEYMRELLNLGFKIMVVGVSAYG 151 (237)
T ss_dssp SHHHHHHHHHHHTTCEEEC-SSSSCCHHHHHHHHHHTTCEEEEEEEESTT
T ss_pred HHHHHHHHHHHHcCCEEEc-cccCCCHHHHHHHHHHCCCEEEEEEEecCC
Confidence 4445677788888877655 567877888888888899999999876554
No 286
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=43.61 E-value=42 Score=18.73 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
...+.+.+.+...|..+.. ..+ .++..+...+..+|++++...-.+ ... -.....+-.. ..+|++++-.
T Consensus 12 ~~~~~l~~~l~~~g~~v~~---~~~-~~~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIW---LVD-GSTALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLG 83 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESC-HHHHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEES
T ss_pred HHHHHHHHHHHhCCcEEEE---ecC-HHHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeC
Confidence 3445555556655654332 233 345556666668999999865322 111 1234444444 4588888865
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 84 ~ 84 (119)
T 2j48_A 84 E 84 (119)
T ss_dssp S
T ss_pred C
Confidence 4
No 287
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=43.34 E-value=76 Score=21.64 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHH---HHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RER---LLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~---I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
...++.+.+.+.+.|..+......++. ... .++.....++|-||+...... . ...+ .+...++||++
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~ 95 (290)
T 2rgy_A 24 GTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLD-ELHRMHPKMVF 95 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHH-HHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHH-HHhhcCCCEEE
Confidence 466677777777777766543333333 234 666666778999888643322 1 1122 23446788888
Q ss_pred EeC
Q 031195 156 VKD 158 (164)
Q Consensus 156 v~~ 158 (164)
+-.
T Consensus 96 ~~~ 98 (290)
T 2rgy_A 96 LNR 98 (290)
T ss_dssp ESS
T ss_pred Ecc
Confidence 753
No 288
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=43.33 E-value=53 Score=21.11 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHH----HHHhhCCCCEEEEe
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLL----EAIEDLKLDSLVMG 126 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~----~~a~~~~~dlivlg 126 (164)
..+.+.+.+.|.++......+|-.+.|. +.+++.++|+||+.
T Consensus 31 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 4466667777887766544444333333 33333369998874
No 289
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=42.96 E-value=78 Score=21.67 Aligned_cols=71 Identities=10% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+...... ......+...++||+++-.
T Consensus 28 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 28 INVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEECC
Confidence 567777888888888766543222222 345677778889999998643221 1123345667899998854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 100 ~ 100 (295)
T 3hcw_A 100 P 100 (295)
T ss_dssp C
T ss_pred C
Confidence 3
No 290
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=42.91 E-value=49 Score=19.36 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...+.+...+...|..+.. ...+ .++.++...+..+|++++...-.+...++ .....+-....+||+++-..
T Consensus 20 ~~~~~l~~~L~~~g~~v~~--~~~~-~~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 20 LAAATLRIQLESLGYDVLG--VFDN-GEEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHHHHTCEEEE--EESS-HHHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHHHHHCCCeeEE--EECC-HHHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 4445555555555554332 1233 34455566666799999986532111111 12333333356899888543
No 291
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=42.77 E-value=49 Score=19.32 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc--CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH--APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~--~~~pVliv~~~ 159 (164)
...+.+.+.+...|..+.. ..+..+++....+...+|+|++...-.+. .++ .....+-+. ..+||+++-..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQPE-SGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCSSS-CHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred HHHHHHHHHHHHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCCCC-CHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 4445566666666655432 24444444444444449999998653221 111 134444443 34888887643
No 292
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=42.50 E-value=60 Score=21.89 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=16.9
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
....+.+...+ +|.||+|++-..
T Consensus 69 ~~~~~~~~l~~--AD~iI~~sP~y~ 91 (242)
T 1sqs_A 69 DGGVIKKELLE--SDIIIISSPVYL 91 (242)
T ss_dssp THHHHHHHHHH--CSEEEEEEEECS
T ss_pred HHHHHHHHHHH--CCEEEEEccccc
Confidence 34566666777 999999987544
No 293
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=42.37 E-value=62 Score=20.99 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHH----HHHhhCCCCEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLL----EAIEDLKLDSLVMG 126 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~----~~a~~~~~dlivlg 126 (164)
..-..+.+.+.+.|+++.....-+|-.+.|. +.+.+ +|+||..
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~--~DlVitt 69 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEV--SDLVVSS 69 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH--CSEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc--CCEEEEc
Confidence 3444567777888888776555554434444 44444 9998874
No 294
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=42.00 E-value=51 Score=19.27 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+.+.+...+..+.. ..+ .++.++..++..+|+|++...-.. ..++ .....+-... .+||+++-..
T Consensus 18 ~~~~~l~~~L~~~~~~v~~---~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 18 DAREWLSTIISNHFPEVWS---AGD-GEEGERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHHHTTCSCEEE---ESS-HHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHhcCcEEEE---ECC-HHHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEecC
Confidence 4445555556554443322 233 344556666678999999865322 1111 1234444433 4788877543
No 295
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=41.87 E-value=72 Score=20.91 Aligned_cols=39 Identities=8% Similarity=-0.049 Sum_probs=24.6
Q ss_pred CCceEEEEeCCCc---cHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 3 GDRKIGVALDFSP---SSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 3 ~~~~iLv~vd~s~---~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
|+|+|+|-+.... .+..+++++.+++. .+..+.++.+.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~d 42 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGD 42 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEeccc
Confidence 3588887665432 35677888887765 366777766543
No 296
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=41.27 E-value=85 Score=21.59 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+....... -.-..+...+.||+++-.
T Consensus 43 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--------~~~~~l~~~~iPvV~i~~ 114 (305)
T 3huu_A 43 SDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD--------PIEHLLNEFKVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc--------HHHHHHHHcCCCEEEECC
Confidence 566777778888888766543322322 3457777888899999886432211 122345567899988854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 115 ~ 115 (305)
T 3huu_A 115 S 115 (305)
T ss_dssp C
T ss_pred C
Confidence 3
No 297
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=41.25 E-value=84 Score=21.53 Aligned_cols=67 Identities=7% Similarity=0.099 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
..++.+.+.+.+.|..+......++. ...+++.....++|-||+....... .-..+...+.||+++-
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---------~~~~~~~~~iPvV~~~ 99 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---------VDPESGDVSIPTVMIN 99 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---------CCCCCTTCCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---------HHHHHHhCCCCEEEEC
Confidence 66777888888888877665444444 3456777777899999986543211 1123445678888874
No 298
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=41.18 E-value=73 Score=24.80 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEe-----cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIY-----WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~-----~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
..+++.+.+.++..|.++.+.-. .|++.+.|.+.+++.+++-|.+.....-. .++-++..+++|-+
T Consensus 66 ~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~e~r---------~~~~l~~~gi~v~~ 136 (522)
T 3zxs_A 66 LAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPGDWR---------LIEALEAMPLPVRF 136 (522)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCSCHH---------HHHHHHHSSSCEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcchHH---------HHHHHHHcCCcEEE
Confidence 46778888888888988887442 37899999999999999999987332222 23333444889888
Q ss_pred EeCCC
Q 031195 156 VKDPS 160 (164)
Q Consensus 156 v~~~~ 160 (164)
++...
T Consensus 137 ~~~~~ 141 (522)
T 3zxs_A 137 LPDDR 141 (522)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 88653
No 299
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=41.13 E-value=78 Score=21.15 Aligned_cols=72 Identities=11% Similarity=0.092 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++. ...+++.....++|-||+....... .... ..+...+.||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~-~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 18 ARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE------DDSY-RELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS------CCHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc------HHHH-HHHHHcCCCEEEEcc
Confidence 567777888888888877765544444 3356666777899999986443111 1122 345567899988854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 91 ~ 91 (272)
T 3o74_A 91 R 91 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 300
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=41.08 E-value=98 Score=22.26 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=25.5
Q ss_pred eEEEEeCC-----CccHHHHHHHHHHhcCCCC-CeEEEEEEec
Q 031195 6 KIGVALDF-----SPSSKFALSWAVNNLLDKG-DTLYIIHINP 42 (164)
Q Consensus 6 ~iLv~vd~-----s~~~~~al~~a~~la~~~~-~~l~ll~v~~ 42 (164)
.|||-.+. ++.+..++..|.+|+. .+ .+++++.+-+
T Consensus 2 ~ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~G~ 43 (320)
T 1o97_D 2 KILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVIGS 43 (320)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEEST
T ss_pred eEEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEECC
Confidence 35665542 3568899999999987 56 5888887654
No 301
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=41.07 E-value=82 Score=21.33 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEe--cCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIY--WGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~--~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
...++.+.+.+.+.|..+..... .++.. ...++.....++|-||+.......... ... .+...++||+++
T Consensus 23 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~-----~~~-~~~~~~iPvV~~ 96 (289)
T 3brs_A 23 SVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD-----AAK-EIKDAGIKLIVI 96 (289)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHH-----HHT-TTGGGTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHH-----HHH-HHHHCCCcEEEE
Confidence 45667777777777876655333 23432 345666667789999986543221111 111 233457898888
Q ss_pred eC
Q 031195 157 KD 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 97 ~~ 98 (289)
T 3brs_A 97 DS 98 (289)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 302
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=40.84 E-value=98 Score=22.16 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhcCCceEEEE------ecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 82 DALDLLDTASRQKEANIVAKI------YWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~------~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
+.+--|.-...+.|..+-..- ..|...+...+....+++|.||+-....+ ..+.+.+++++||+
T Consensus 49 RTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~---------~~~~la~~~~vPVI 118 (304)
T 3r7f_A 49 RTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDE---------YYEELVSQVNIPIL 118 (304)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTT---------CHHHHHHHCSSCEE
T ss_pred hHHHhHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 333445555555555444322 22555566666777778899999766443 34566788889965
No 303
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=40.62 E-value=55 Score=19.27 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh---cCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~~pVliv~~ 158 (164)
...+.+...+...|..+. .....++.++.+.+..+|++++...-.+ ..++ .+...+-. ...+||+++-.
T Consensus 15 ~~~~~l~~~L~~~g~~v~----~~~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVR----RAASGEEALQQIYKNLPDALICDVLLPG-IDGY---TLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HHHHHHHHHHHHTTCEEE----EESSHHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSGGGTTCCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEE----EeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHcCCCcCCccEEEEec
Confidence 344455555655565432 2223445566777788999999854222 1111 12333332 23578888754
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 87 ~ 87 (136)
T 3t6k_A 87 Q 87 (136)
T ss_dssp T
T ss_pred C
Confidence 3
No 304
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=40.53 E-value=57 Score=19.37 Aligned_cols=45 Identities=11% Similarity=0.261 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+...+.+.+.+...|.+++..-......+ ... ++|.||+|++..+
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~~~----~l~--~~d~vi~g~p~y~ 58 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTNVD----DVA--SKDVILLGCPAMG 58 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCCHH----HHH--TCSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCHH----HHh--cCCEEEEEccccC
Confidence 34455566666666777665433332111 123 4999999987653
No 305
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=40.46 E-value=75 Score=22.65 Aligned_cols=76 Identities=5% Similarity=-0.075 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC--ccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP--CPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~--~pVliv 156 (164)
.+..+...+.. ..+.+-.-+...+..++| .+.+++.++|-+.+-.+... ...--+=..-..|...++ .||+++
T Consensus 64 ~~v~~~~v~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~~-~s~~~l~~~f~~va~a~~~~lPiilY 140 (313)
T 3dz1_A 64 EAVATRFIKRA--KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPSL-RTDEQITTYFRQATEAIGDDVPWVLQ 140 (313)
T ss_dssp HHHHHHHHHHC--TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTC-CSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHHHHHc--CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC-CCHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 44555555554 233433322222444433 45578889999988755422 111111123456777778 999998
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
..+
T Consensus 141 n~P 143 (313)
T 3dz1_A 141 DYP 143 (313)
T ss_dssp ECH
T ss_pred eCc
Confidence 643
No 306
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=40.36 E-value=44 Score=21.33 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=18.3
Q ss_pred hhhcCCceEEEEecCChhHHHHHHHhh---CCCCEEEEe
Q 031195 91 SRQKEANIVAKIYWGDARERLLEAIED---LKLDSLVMG 126 (164)
Q Consensus 91 ~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dlivlg 126 (164)
+.+.|.++.....-+|-.+.|.+..++ .++|+||..
T Consensus 38 l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp ---CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 667777766544444444444433322 249998874
No 307
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.35 E-value=59 Score=19.50 Aligned_cols=72 Identities=17% Similarity=0.053 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+...+.. . .+..-+..++.++..++.++|+|++...-.+ ..+ -.....+-... .+||+++-..
T Consensus 26 ~~~~~l~~~L~~~~~~-~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 26 LFREGVVRALSLSGSV-N-VVGEADDGAAALELIKAHLPDVALLDYRMPG-MDG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HHHHHHHHHHHHHSSE-E-EEEEESSHHHHHHHHHHHCCSEEEEETTCSS-SCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHHhhCCCe-E-EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 4445556666555421 1 1222333445556666678999999865322 111 11234443333 4788887543
No 308
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=40.22 E-value=59 Score=19.48 Aligned_cols=72 Identities=8% Similarity=0.042 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+...+..+. +..-+..++.++.+++..+|+|++...-.. ..++ .....+-... .+||+++-..
T Consensus 31 ~~~~~l~~~L~~~~~~~~--v~~~~~~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 31 MLRDAMCQLLTLQPDVES--VLQAKNGQEAIQLLEKESVDIAILDVEMPV-KTGL---EVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHHHHHTSTTEEE--EEEESSHHHHHHHHTTSCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHHHhCCCcEE--EEEECCHHHHHHHhhccCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEeCC
Confidence 444556666665542222 333334456667778888999999865322 1111 1234444433 4888887643
No 309
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=40.13 E-value=50 Score=22.18 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcCCc
Q 031195 18 KFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKEAN 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (164)
...++.++++|+..|++...+|.-..... . ....+...+...+.++.+.+.+.+.|+.
T Consensus 75 ~~~~~~~i~~A~~lGa~~v~~~~g~~~~~-------------------~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 132 (254)
T 3ayv_A 75 LRRLLFGLDRAAELGADRAVFHSGIPHGR-------------------T---PEEALERALPLAEALGLVVRRARTLGVR 132 (254)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCTTC-------------------C---HHHHHHTHHHHHHHTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCccc-------------------c---cccHHHHHHHHHHHHHHHHHHHhhcCCE
Confidence 45678889999999999888774222110 0 0001111233356666777777777887
Q ss_pred eEEEEecCChhHHHHHHHhh
Q 031195 98 IVAKIYWGDARERLLEAIED 117 (164)
Q Consensus 98 ~~~~~~~g~~~~~I~~~a~~ 117 (164)
+-.+...+...+.+.+.++.
T Consensus 133 l~lEn~~~~~~~~~~~l~~~ 152 (254)
T 3ayv_A 133 LLLENSHEPHPEALRPVLEA 152 (254)
T ss_dssp EEEECSSCSSGGGTHHHHHH
T ss_pred EEEcCCCCCCHHHHHHHHHh
Confidence 77665554333444444444
No 310
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=40.11 E-value=89 Score=21.49 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+........ .....+. . ++||+++-.
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~------~~~~~l~-~-~iPvV~i~~ 102 (303)
T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD------DMLAAVL-E-GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH------HHHHHHH-T-TSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH------HHHHHHh-C-CCCEEEECC
Confidence 567778888888888887765444443 34567777888999999965433210 0234444 4 899998854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 103 ~ 103 (303)
T 3kke_A 103 R 103 (303)
T ss_dssp C
T ss_pred c
Confidence 3
No 311
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=40.06 E-value=99 Score=22.00 Aligned_cols=77 Identities=8% Similarity=-0.058 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHH--HHHHHhhCCCCEEEEeccCC---ccc-chhcccchhHHHhhcCCccEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARER--LLEAIEDLKLDSLVMGSRGL---GTV-RRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~~~~dlivlg~~~~---~~~-~~~~~~s~~~~i~~~~~~pVl 154 (164)
.+..+...+.... .+.+-.-+...+..++ ..+.+++.++|-+.+-.+-. ... ..-+. ..-..|...++.||+
T Consensus 64 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~-~~f~~va~a~~lPii 141 (309)
T 3fkr_A 64 DVLTRTILEHVAG-RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIF-EFYARVSDAIAIPIM 141 (309)
T ss_dssp HHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHH-HHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHhCC-CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHH-HHHHHHHHhcCCCEE
Confidence 3444444444422 2444333332244444 34568889999998876543 111 11111 234567788899999
Q ss_pred EEeCC
Q 031195 155 IVKDP 159 (164)
Q Consensus 155 iv~~~ 159 (164)
++..+
T Consensus 142 lYn~P 146 (309)
T 3fkr_A 142 VQDAP 146 (309)
T ss_dssp EEECG
T ss_pred EEeCC
Confidence 99754
No 312
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=40.04 E-value=83 Score=21.12 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg 126 (164)
.+.+....++....|.++...+. |...+.+.+.+..+++|-+++-
T Consensus 22 ~ell~~A~~La~~~g~~v~av~~-G~~~~~~~~~~~~~Gad~v~~v 66 (217)
T 3ih5_A 22 LELLTKGRSLANELNCQLEAVVA-GTGLKEIEKQILPYGVDKLHVF 66 (217)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEE-ESCCTTTHHHHGGGTCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEEE-CCCHHHHHHHHHhcCCCEEEEe
Confidence 35555555555544444444332 3223344444444555554443
No 313
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=39.89 E-value=54 Score=18.93 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhC-CCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDL-KLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~-~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+...|..+.. ..+ .++.++...+. .+|++++...-.....++ .....+-... .+||+++-..
T Consensus 16 ~~~~~l~~~L~~~g~~v~~---~~~-~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 16 ILLLDFESTLTDAGFLVTA---VSS-GAKAIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ESS-HHHHHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEE---ECC-HHHHHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 3444555555555654432 233 34455666665 899999986532111111 1234443333 5899888543
No 314
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=39.88 E-value=80 Score=21.94 Aligned_cols=35 Identities=3% Similarity=0.130 Sum_probs=25.5
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
.+|+|+++ ...|..++..+.++ +..+.++|+....
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDtg~ 89 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDTGR 89 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECCSC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeCCC
Confidence 57999999 88888777777665 3457778875443
No 315
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=39.64 E-value=1.1e+02 Score=22.24 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=25.8
Q ss_pred EecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 102 IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 102 ~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
+..|...+...+....+ +|.||+-.... ...+.+.+++++||+
T Consensus 84 ~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 126 (328)
T 3grf_A 84 VGGKETVQDTAEVFSRM-VDICTARLATK---------EMMREMAQHASVPCI 126 (328)
T ss_dssp -----CHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred CCCCCCHHHHHHHHHhh-CCEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 33454445555555556 89999975533 245677788899976
No 316
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=39.39 E-value=52 Score=18.62 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
...+.+...+...|..+. ....+. ++.++...+.++|++++...-.+ ..+. .....+-+. ..+|++++-..
T Consensus 13 ~~~~~l~~~l~~~g~~vv--~~~~~~-~~a~~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 13 FMRMMLKDIITKAGYEVA--GEATNG-REAVEKYKELKPDIVTMDITMPE-MNGI---DAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp HHHHHHHHHHHHTTCEEE--EEESSH-HHHHHHHHHHCCSEEEEECSCGG-GCHH---HHHHHHHHHCTTCCEEEEECT
T ss_pred HHHHHHHHHHhhcCcEEE--EEECCH-HHHHHHHHhcCCCEEEEeCCCCC-CcHH---HHHHHHHhhCCCCeEEEEeCC
Confidence 344445555555555431 122333 44445556667999999854321 1111 133444333 34888887543
No 317
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=39.27 E-value=50 Score=22.62 Aligned_cols=41 Identities=10% Similarity=0.012 Sum_probs=21.4
Q ss_pred CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 118 LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 118 ~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.++|++|+-..+.- ...+..+.....+++...+||++|=..
T Consensus 130 ~~~D~vlIEGagGl-~~pl~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 130 KTYDLVIVEGAGGL-CVPITLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp GTCSEEEEECCSCT-TCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred hcCCEEEEECCCCc-cccccccchHHHHHHHcCCCEEEEEcC
Confidence 35787777433211 111111223455777778887777543
No 318
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=39.23 E-value=50 Score=21.93 Aligned_cols=35 Identities=20% Similarity=0.050 Sum_probs=19.6
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
..+++++.|+.+-. .+++.+-.+. ..+..+.|...
T Consensus 3 ~~~~ilalD~~~~~-~~~~~~~~~~----~~v~~~kv~~~ 37 (216)
T 1q6o_A 3 LPMLQVALDNQTMD-SAYETTRLIA----EEVDIIEVGTI 37 (216)
T ss_dssp CCEEEEEECCSSHH-HHHHHHHHHG----GGCSEEEECHH
T ss_pred cCCeEEEECCCCHH-HHHHHHHHhc----ccCCEEEECHH
Confidence 46899999997643 3444444432 23344555443
No 319
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=39.13 E-value=1.1e+02 Score=22.12 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHhhhcCCceEEEEec---CChhHHHHHHHhhCCCCEEEEeccC
Q 031195 89 TASRQKEANIVAKIYW---GDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
+.+.+.|+.+...... +....++++..++.++|++|+-..+
T Consensus 66 ~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 109 (329)
T 2bw0_A 66 LEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCS 109 (329)
T ss_dssp HHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSCS
T ss_pred HHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEeehh
Confidence 4556667776542211 1223678888899999999997654
No 320
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=39.13 E-value=42 Score=21.48 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=23.0
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhh---CCCCEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIED---LKLDSLVMG 126 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dlivlg 126 (164)
.+...+++.|.++.....-.|- +.|.+..++ .++|+||..
T Consensus 31 ~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 31 IITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 3556666667766543333333 555554333 469998874
No 321
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=39.08 E-value=93 Score=21.40 Aligned_cols=72 Identities=7% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.....++|-||+.......... ..+ .+...++||+++-.
T Consensus 18 ~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~~-~~~~~~iPvV~~~~ 91 (306)
T 2vk2_A 18 AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEP-----VLK-EAKDAEIPVFLLDR 91 (306)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHH-----HHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHH-----HHH-HHHHCCCCEEEecC
Confidence 4555667777777787766543334443 234555556789999986433221111 122 34456799988854
No 322
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=38.99 E-value=37 Score=23.35 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=14.9
Q ss_pred hhCCCCEEEEeccCCcccc
Q 031195 116 EDLKLDSLVMGSRGLGTVR 134 (164)
Q Consensus 116 ~~~~~dlivlg~~~~~~~~ 134 (164)
++.++|.||||+.+...+.
T Consensus 171 ~~~gad~IVLGCTh~p~l~ 189 (245)
T 3qvl_A 171 KEDGSGAIVLGSGGMATLA 189 (245)
T ss_dssp HHSCCSEEEECCGGGGGGH
T ss_pred HhcCCCEEEECCCChHHHH
Confidence 4578999999998776544
No 323
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=38.60 E-value=41 Score=24.81 Aligned_cols=54 Identities=6% Similarity=0.062 Sum_probs=38.7
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCCC
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~~ 160 (164)
.-.+.+.+.+++.++|-||.-..........- .....+.+++.+.|+|.+--+.
T Consensus 300 ~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~-~~~~~~~~~~~giP~l~ie~D~ 353 (385)
T 3o3m_B 300 KRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYD-YPLVRKDIEDSGIPTLYVEIDQ 353 (385)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEETTCHHHHHH-HHHHHHHHHTTTCCEEEEEECT
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCccHhh-HHHHHHHHHHCCCCEEEEEecC
Confidence 46788999999999999999766555443322 2334556688899999986443
No 324
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=38.44 E-value=77 Score=22.09 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=30.1
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.+.+....+..++.|+|+...-.. ..-. .....+....++|..+|+.
T Consensus 129 vneVtKaIekgKAqLVVIA~DvdP-ielv---~~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 129 LNHITTLIENKQAKLVVIAHDVDP-IELV---IFLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp HHHHHHHHHTSCCSEEEEESCCSS-THHH---HHHHHHHHHTTCCEEEESC
T ss_pred hHHHHHHHHcCCceEEEEeCCCCh-HHHH---HHHHHHHHHcCCCEEEECC
Confidence 678888888899999999855432 1110 1123455666777777764
No 325
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=38.22 E-value=42 Score=21.90 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=3.5
Q ss_pred EEEeccCC
Q 031195 123 LVMGSRGL 130 (164)
Q Consensus 123 ivlg~~~~ 130 (164)
.|.|.+..
T Consensus 68 ~v~GNHD~ 75 (228)
T 1uf3_A 68 YVPGPQDA 75 (228)
T ss_dssp EECCTTSC
T ss_pred EECCCCCc
Confidence 34454443
No 326
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=38.11 E-value=1.1e+02 Score=21.91 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCc--cc-chhcccchhHHHhhcCCccEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLG--TV-RRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~--~~-~~~~~~s~~~~i~~~~~~pVli 155 (164)
.+..+...+.... .+.+-.-+...+..++| .+.+++.++|-+.+-.+... .. ..-+. ..-..|...++.||++
T Consensus 67 ~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~-~~f~~ia~a~~lPiil 144 (318)
T 3qfe_A 67 AQLIATARKAVGP-DFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIK-SFFDDVSCQSPLPVVI 144 (318)
T ss_dssp HHHHHHHHHHHCT-TSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHH-HHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHH-HHHHHHHhhCCCCEEE
Confidence 3444444444422 23443333222444433 45677889999888766321 11 11111 1345677888999999
Q ss_pred EeCCCC
Q 031195 156 VKDPSF 161 (164)
Q Consensus 156 v~~~~~ 161 (164)
+..+.+
T Consensus 145 Yn~P~~ 150 (318)
T 3qfe_A 145 YNFPGV 150 (318)
T ss_dssp EECCC-
T ss_pred EeCCcc
Confidence 986653
No 327
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.96 E-value=86 Score=20.69 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+..+ .++.+....+|++++...-.+ ..++ .....+-....+||+++-.
T Consensus 16 ~~~~~l~~~L~~~g~~v~---~~~~~~~-al~~l~~~~~dlvilD~~l~~-~~g~---~~~~~lr~~~~~~ii~lt~ 84 (238)
T 2gwr_A 16 SLAEMLTIVLRGEGFDTA---VIGDGTQ-ALTAVRELRPDLVLLDLMLPG-MNGI---DVCRVLRADSGVPIVMLTA 84 (238)
T ss_dssp HHHHHHHHHHHHTTCEEE---EECCGGG-HHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEE---EECCHHH-HHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCCcEEEEeC
Confidence 344445555555555432 2233333 345556667999999864322 1111 1344444444789998854
No 328
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=37.89 E-value=53 Score=22.59 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=28.8
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...+++...+.++|+|.+|-+........+ .....+ ++.+.|+++.+.-
T Consensus 22 t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~--~~v~~i-r~~~~Pivlm~y~ 70 (240)
T 1viz_A 22 PDEQLEILCESGTDAVIIGGSDGVTEDNVL--RMMSKV-RRFLVPCVLEVSA 70 (240)
T ss_dssp CHHHHHHHHTSCCSEEEECC----CHHHHH--HHHHHH-TTSSSCEEEECSC
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHh-hCcCCCEEEecCc
Confidence 456778888889999999964222222211 123333 3467899887643
No 329
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=37.76 E-value=61 Score=18.95 Aligned_cols=67 Identities=9% Similarity=-0.086 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
....+.+...+...|..+. ...+ .++.++......+|+++ ..+..++ .....+-... .+||+++-..
T Consensus 28 ~~~~~~l~~~L~~~g~~v~---~~~~-~~~al~~l~~~~~dlvi--~~~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 28 SVLGGEIEKGLNVKGFMAD---VTES-LEDGEYLMDIRNYDLVM--VSDKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHHHHHTTCEEE---EESC-HHHHHHHHHHSCCSEEE--ECSTTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHcCcEEE---EeCC-HHHHHHHHHcCCCCEEE--EcCccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 3445556666665555432 2233 34555666777899999 2222221 1233333334 6888887543
No 330
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=37.72 E-value=59 Score=18.71 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
...+.+...+...|.++. ...+ .++.++..++.++|++++...-.+ ..++ .....+-.. ..+||+++-.
T Consensus 13 ~~~~~l~~~l~~~g~~v~---~~~~-~~~al~~l~~~~~dlvllD~~~p~-~~g~---~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVI---EAEN-GQIALEKLSEFTPDLIVLXIMMPV-MDGF---TVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESS-HHHHHHHHTTBCCSEEEECSCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHHHHHHCCcEEE---EeCC-HHHHHHHHHhcCCCEEEEeccCCC-CcHH---HHHHHHHhcccccCCCEEEEec
Confidence 344445555665565432 2233 445566677789999999754221 1111 123444332 3589988864
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 85 ~ 85 (122)
T 3gl9_A 85 K 85 (122)
T ss_dssp C
T ss_pred C
Confidence 3
No 331
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=37.72 E-value=72 Score=20.90 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHHhhh---cCCceEEEEecCChhH----HHHHHHhhCCCCEEEEe
Q 031195 87 LDTASRQ---KEANIVAKIYWGDARE----RLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 87 ~~~~~~~---~~~~~~~~~~~g~~~~----~I~~~a~~~~~dlivlg 126 (164)
+.+.+.+ .|.++......+|-.+ +|.+.+.+.++|+||+.
T Consensus 39 L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 39 LKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp HHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 4555555 5776665444444333 33333443479998874
No 332
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=37.64 E-value=18 Score=25.08 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=25.4
Q ss_pred CceEEEEeCCCccH-HHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSS-KFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~-~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.|.|++-.||.+.+ ...+ .|+++|+..|.+|+.+-+.+.
T Consensus 10 ~k~iillTDG~~~~g~~p~-~aa~~a~~~gi~v~tIGig~~ 49 (242)
T 3rag_A 10 IRQILVITDGCSNIGPDPV-EAARRAHRHGIVVNVIGIVGR 49 (242)
T ss_dssp EEEEEEEESSCCCSSSCHH-HHHHHHHHTTCEEEEEEECCS
T ss_pred ccEEEEEccCCCCCCCCHH-HHHHHHHHCCCEEEEEEecCC
Confidence 45677778887542 2233 334567778999999999544
No 333
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=37.62 E-value=1e+02 Score=21.59 Aligned_cols=64 Identities=6% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......+ .....+++.....++|-||+... -..+...+.||+++-.
T Consensus 80 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~--------------~~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 80 SESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV--------------VGSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC--------------TTCCC-CCSCEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch--------------HHHHhhCCCCEEEECc
Confidence 4677778888888887766544333 12234566666778999998644 1123445678877743
No 334
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=37.47 E-value=95 Score=21.04 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......+++. ...++.....++|-||+......... ...+ .+...++||+++-.
T Consensus 18 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 91 (290)
T 2fn9_A 18 VVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSI-----ANVK-RAKEAGIPVFCVDR 91 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHHH-HHHHCCCeEEEEec
Confidence 4566777777777887766543334543 23455556678999988643222111 1122 34456899988854
No 335
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=37.06 E-value=70 Score=20.34 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=17.3
Q ss_pred CCceEEEEecCChhHHHHHH----HhhCCCCEEEEe
Q 031195 95 EANIVAKIYWGDARERLLEA----IEDLKLDSLVMG 126 (164)
Q Consensus 95 ~~~~~~~~~~g~~~~~I~~~----a~~~~~dlivlg 126 (164)
|.++.......|-.+.|.+. +...++|+||..
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 66665544444433333333 332479998874
No 336
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=36.66 E-value=1.2e+02 Score=22.02 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=33.3
Q ss_pred ChhHHH--HHHHhhCCCCEEEEeccCCcc-cchhcccchhHHHhh-cCCccEEEEeCC
Q 031195 106 DARERL--LEAIEDLKLDSLVMGSRGLGT-VRRIILGSVSNYVMT-HAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I--~~~a~~~~~dlivlg~~~~~~-~~~~~~~s~~~~i~~-~~~~pVliv~~~ 159 (164)
+..++| .+.+++.++|-+.+..+.... ...--+-..-..|.. .++.||+++..+
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 103 NTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 444443 555788899999887665433 221111123456777 789999998644
No 337
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=36.65 E-value=1.2e+02 Score=21.94 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
...+.+.+.+...|.+++..-........+.+...+ +|.+|+|++..+
T Consensus 267 ~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~g~p~y~ 314 (398)
T 1ycg_A 267 KMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILD--ARAVLVGSPTIN 314 (398)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHH--CSEEEEECCCBT
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH--CCEEEEECCccC
Confidence 334445555555566665544444445566666667 999999986544
No 338
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=36.57 E-value=87 Score=20.38 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+. ++.++......+|++++...-.+ ..++ .....+-....+||+++-.
T Consensus 15 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvllD~~l~~-~~g~---~~~~~l~~~~~~~ii~lt~ 83 (230)
T 2oqr_A 15 SLADPLAFLLRKEGFEAT---VVTDG-PAALAEFDRAGADIVLLDLMLPG-MSGT---DVCKQLRARSSVPVIMVTA 83 (230)
T ss_dssp HHHHHHHHHHHHTTCEEE---EECSH-HHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHHCSCSEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEE---EECCH-HHHHHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHcCCCCCEEEEeC
Confidence 334445555555555432 22333 44455666678999999864322 1111 1344444445689998854
No 339
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=36.50 E-value=64 Score=18.81 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
...+.+...+...+ .+.. +.......+.++..+..++|++++...-.+ ..++ .....+-.. ..+||+++-..
T Consensus 14 ~~~~~l~~~l~~~~-~~~~-v~~~~~~~~al~~~~~~~~dlvilD~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 14 MLRQAMVQLIKLHG-DFEI-LADTDNGLDAMKLIEEYNPNVVILDIEMPG-MTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHHHHS-SEEE-EEEESCHHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHHhhCC-CcEE-EEEcCCHHHHHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 33444555554443 1222 222233344556666678999999864322 1111 133444433 34899888543
No 340
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=36.39 E-value=61 Score=18.52 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
...+.+...+...|..+. ..+..++.++.....++|++++...-.+. .+. .....+-.. ..+|++++-.
T Consensus 13 ~~~~~l~~~l~~~g~~v~----~~~~~~~a~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 13 PIREMVCFVLEQNGFQPV----EAEDYDSAVNQLNEPWPDLILLAWMLPGG-SGI---QFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp HHHHHHHHHHHHTTCEEE----EECSHHHHHTTCSSSCCSEEEEESEETTE-EHH---HHHHHHHTSTTTTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCceEE----EeCCHHHHHHHHhccCCCEEEEecCCCCC-CHH---HHHHHHHhCcccCCCCEEEEeC
Confidence 334445555555555432 22334455566677789999998543221 111 133444333 3588888743
No 341
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=36.23 E-value=1e+02 Score=21.19 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.+++++...+.|..+...+.-| +..+=...+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~~~I~VDGG-I~~~ti~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRDILLEIDGG-VNPYNIAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSCCEEEEESS-CCTTTHHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCCeeEEEECC-cCHHHHHHHHHcCCCEEEEehH
Confidence 4455555555666666655555 2233355667789999999964
No 342
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=36.02 E-value=1.1e+02 Score=21.29 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC---CcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG---LGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~---~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
.....+...+...|..+.. ...+. .+.++.+.+..+|+|++...= -.++. .+..|-....+||+++-.
T Consensus 171 ~~~~~l~~~L~~~g~~v~~--~a~~g-~eAl~~~~~~~~dlvl~D~~MPd~mdG~e------~~~~ir~~~~~piI~lT~ 241 (286)
T 3n0r_A 171 VIAADIEALVRELGHDVTD--IAATR-GEALEAVTRRTPGLVLADIQLADGSSGID------AVKDILGRMDVPVIFITA 241 (286)
T ss_dssp HHHHHHHHHHHHTTCEEEE--EESSH-HHHHHHHHHCCCSEEEEESCCTTSCCTTT------TTHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHhhccCceEEE--EeCCH-HHHHHHHHhCCCCEEEEcCCCCCCCCHHH------HHHHHHhcCCCCEEEEeC
Confidence 4445566666666655431 12333 445556667789999998542 22222 233333333899998864
No 343
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=35.94 E-value=70 Score=19.05 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...+.+...+...|..+.. ..+ .++.++.....++|+|++...
T Consensus 25 ~~~~~l~~~L~~~g~~v~~---~~~-~~~al~~~~~~~~dlvl~D~~ 67 (143)
T 3m6m_D 25 ANRMVLQRLLEKAGHKVLC---VNG-AEQVLDAMAEEDYDAVIVDLH 67 (143)
T ss_dssp HHHHHHHHHHHC--CEEEE---ESS-HHHHHHHHHHSCCSEEEEESC
T ss_pred HHHHHHHHHHHHcCCeEEE---eCC-HHHHHHHHhcCCCCEEEEeCC
Confidence 4445566666665654432 233 456667777889999999854
No 344
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=35.79 E-value=51 Score=21.02 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNS 44 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~ 44 (164)
..+.++|.+..+..+...++ +++.|+..|+++.++.-.+..
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~s 118 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIH-TAAKAKSLHGIVAALTINPES 118 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEESCTTS
T ss_pred CCCCEEEEEcCCCCcHHHHH-HHHHHHHCCCEEEEEECCCCC
Confidence 35679999999998877665 556788899998888754443
No 345
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=35.79 E-value=1.2e+02 Score=22.27 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHhcCCC-CCeEEEEEE
Q 031195 15 PSSKFALSWAVNNLLDK-GDTLYIIHI 40 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~-~~~l~ll~v 40 (164)
..++..+++|+++|+.. ..+|+++|=
T Consensus 163 ~~~eRiar~AFe~A~~r~rkkVt~v~K 189 (354)
T 3blx_B 163 DASERVIRYAFEYARAIGRPRVIVVHK 189 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34678899999999886 667888883
No 346
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=35.65 E-value=1.1e+02 Score=21.06 Aligned_cols=37 Identities=5% Similarity=0.098 Sum_probs=26.7
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
..++++|+++|.-.|.-++..+.+. .+.++..+++..
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~~ 61 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMPT 61 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECCS
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEecC
Confidence 4689999999988777666655543 357788888743
No 347
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=35.57 E-value=63 Score=18.70 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=25.3
Q ss_pred CceEEEEeCCCc----cHHHHHHHHHHhcCCCCC-eEEEEEEecCC
Q 031195 4 DRKIGVALDFSP----SSKFALSWAVNNLLDKGD-TLYIIHINPNS 44 (164)
Q Consensus 4 ~~~iLv~vd~s~----~~~~al~~a~~la~~~~~-~l~ll~v~~~~ 44 (164)
|+++++.+..++ ....++..|..++...+. .+.++...+.-
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV 46 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAV 46 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHH
Confidence 356777777654 345677777766544255 77766654443
No 348
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=35.55 E-value=69 Score=18.87 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=34.7
Q ss_pred HHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeC
Q 031195 84 LDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKD 158 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~ 158 (164)
.+.+...+...|..+. ...+ .++.++......+|++++...-.+ ..+. .....+-.. ..+||+++-.
T Consensus 17 ~~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvllD~~l~~-~~g~---~l~~~l~~~~~~~~ii~ls~ 84 (137)
T 3cfy_A 17 AILYKQYVKDEPYDIF---HVET-GRDAIQFIERSKPQLIILDLKLPD-MSGE---DVLDWINQNDIPTSVIIATA 84 (137)
T ss_dssp HHHHHHHTTTSSSEEE---EESS-HHHHHHHHHHHCCSEEEECSBCSS-SBHH---HHHHHHHHTTCCCEEEEEES
T ss_pred HHHHHHHHHhcCceEE---EeCC-HHHHHHHHHhcCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEEe
Confidence 3445555555555432 2233 344556666678999999854322 1111 123434333 3478888754
No 349
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=35.44 E-value=95 Score=21.69 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhH--HHHHHHhhCC--CCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARE--RLLEAIEDLK--LDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~--~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+.+.+.+.+.|..+......++... ..++.....+ +|.||+......... ...+ .+...++||+.+
T Consensus 21 ~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~ 94 (332)
T 2rjo_A 21 TAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADAR-----VIVE-ACSKAGAYVTTI 94 (332)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHH-----HHHH-HHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHH-----HHHH-HHHHCCCeEEEE
Confidence 46667777778888887766444445432 3455555567 999988643221110 1122 234467898888
Q ss_pred eC
Q 031195 157 KD 158 (164)
Q Consensus 157 ~~ 158 (164)
-.
T Consensus 95 ~~ 96 (332)
T 2rjo_A 95 WN 96 (332)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 350
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=35.37 E-value=1.1e+02 Score=21.52 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=19.4
Q ss_pred EEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEE
Q 031195 8 GVALDFSPSSKFALSWAVNNLLDKGDTLYIIHI 40 (164)
Q Consensus 8 Lv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v 40 (164)
++...|+..+--+...|..++...|.++.++..
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 344455555666666666665545666666654
No 351
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=35.34 E-value=13 Score=21.33 Aligned_cols=41 Identities=7% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHhhhc-CCceEEEEecCChhHHHHHHHhh-CCCCEEEEecc
Q 031195 84 LDLLDTASRQK-EANIVAKIYWGDARERLLEAIED-LKLDSLVMGSR 128 (164)
Q Consensus 84 l~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~-~~~dlivlg~~ 128 (164)
++.+.+.+.+. +. ......|+.+.. ++-.. .++|++|+...
T Consensus 4 l~~i~~~l~~~~~~--~~v~LFGS~ArG--~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 4 MKEIKEITKKDVQD--AEIYLYGSVVEG--DYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHCTT--CEEEEESHHHHC--CSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHcCC--cEEEEEEEEEeC--CCCCCCCceEEEEEeCC
Confidence 34444545442 33 444666766543 22234 68999998764
No 352
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=35.31 E-value=87 Score=20.00 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
...+.+...+...|..+.. ...+. .+.++.+....+|++++...-.+ ..++ .....+-...+.||+++-
T Consensus 24 ~~~~~l~~~L~~~g~~v~~--~~~~~-~~al~~~~~~~~dlvi~D~~~p~-~~g~---~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 24 LIRMDLAEMLREEGYEIVG--EAGDG-QEAVELAELHKPDLVIMDVKMPR-RDGI---DAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHHHHHHHHHTTCEEEE--EESSH-HHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEE--EeCCH-HHHHHHHhhcCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEe
Confidence 4445555555555554321 22333 44445666677999999854322 1111 234555555567888874
No 353
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=35.21 E-value=21 Score=25.54 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGD 106 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~ 106 (164)
...++++.+.+.+.+ ++..+..||
T Consensus 47 ~~~l~~lv~~~~~~~--~D~vliaGD 70 (336)
T 2q8u_A 47 KKALDKVVEEAEKRE--VDLILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHHHHT--CSEEEEESC
T ss_pred HHHHHHHHHHHHHhC--CCEEEECCc
Confidence 355566666665553 445566677
No 354
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=35.16 E-value=52 Score=21.37 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=4.6
Q ss_pred CCCEEEEecc
Q 031195 119 KLDSLVMGSR 128 (164)
Q Consensus 119 ~~dlivlg~~ 128 (164)
+.++-|+|++
T Consensus 87 ~~~~~iVGWY 96 (187)
T 2o95_A 87 NARERIVGWY 96 (187)
T ss_dssp SSSCEEEEEE
T ss_pred CCCCCEEEEE
Confidence 3444444443
No 355
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.04 E-value=95 Score=20.37 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCceEEEEecC-ChhHHHHHHHhhCCCCEEEEe
Q 031195 95 EANIVAKIYWG-DARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 95 ~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg 126 (164)
+++++...... +-.+..++.+++.++++||=|
T Consensus 117 ~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~ 149 (196)
T 2q5c_A 117 GVKIKEFLFSSEDEITTLISKVKTENIKIVVSG 149 (196)
T ss_dssp TCEEEEEEECSGGGHHHHHHHHHHTTCCEEEEC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCeEEECC
Confidence 56666655554 566778888888899986654
No 356
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=34.97 E-value=99 Score=20.51 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=26.8
Q ss_pred HHHHHhhhcCCceEEEEecC--------C-hhHHHHHHH---hhC--CCCEEEEeccCCcc
Q 031195 86 LLDTASRQKEANIVAKIYWG--------D-ARERLLEAI---EDL--KLDSLVMGSRGLGT 132 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g--------~-~~~~I~~~a---~~~--~~dlivlg~~~~~~ 132 (164)
.+.+.++..|+++......+ . ..+.+.+.+ .+. ++|.||+|+..-..
T Consensus 124 ~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaIvLgCT~l~~ 184 (223)
T 2dgd_A 124 EEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALST 184 (223)
T ss_dssp HHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEEECCTTSCC
T ss_pred HHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEEEEeCCcccH
Confidence 45556666677654432222 1 123344443 334 79999999887664
No 357
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=34.97 E-value=1e+02 Score=20.82 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++..+ ..++.....++|-||+.......... ... .+...++||+++-.
T Consensus 17 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~~-~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 17 VTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVT-----AIK-EANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHH-----HHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHH-----HHH-HHHHCCCeEEEecC
Confidence 45666777777777877655433345432 34555557789999986432211111 122 34556799988853
No 358
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=34.73 E-value=1.5e+02 Score=22.41 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=26.0
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+.+.+.+...+. ....+..+.-...+.+.+++.++|+++-+++
T Consensus 352 ~~~~~ll~~~~~-~~~~v~~~~d~~~l~~~i~~~~pDl~ig~~~ 394 (458)
T 1mio_B 352 KEIDAMLAEAGI-EGSKVKVEGDFFDVHQWIKNEGVDLLISNTY 394 (458)
T ss_dssp HHHHHHHHTTTC-CSCEEEESCBHHHHHHHHHHSCCSEEEESGG
T ss_pred HHHHHHHHhcCC-CCCEEEECCCHHHHHHHHHhcCCCEEEeCcc
Confidence 334444444330 2234555645566888999999999986544
No 359
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=34.56 E-value=1e+02 Score=20.66 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......++.. ...++.....++|-||+.......... .. ..+...+.||+++-.
T Consensus 17 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~-~~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 17 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGN-----AV-KMANQANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHH-----HH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHH-----HH-HHHHHCCCcEEEecC
Confidence 4666777777888887665533334443 234556667789999985432211111 11 234556799998854
No 360
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=34.52 E-value=1.1e+02 Score=20.77 Aligned_cols=68 Identities=6% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......+++. ..+++.....++|-||+....... .....+ .++||+.+-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~l---~~iPvV~~~~ 92 (288)
T 2qu7_A 23 TEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKF-------QMKREW---LKIPIMTLDR 92 (288)
T ss_dssp HHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSCC-------CCCGGG---GGSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCCh-------HHHHHh---cCCCEEEEec
Confidence 4666777778888887766543334443 345666667789998886443221 112223 5678888753
No 361
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=34.28 E-value=1.3e+02 Score=21.54 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhhcCCceEEEE------ecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 82 DALDLLDTASRQKEANIVAKI------YWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~------~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
+.+--|.-...+.|..+-..- ..|...+...+....+ +|.||+-....+ ..+.+.+++++||+=
T Consensus 58 RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~~---------~~~~la~~~~vPVIN 127 (301)
T 2ef0_A 58 RTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERF-VEGIAARVFRHE---------TVEALARHAKVPVVN 127 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTT-CSEEEEECSSHH---------HHHHHHHHCSSCEEE
T ss_pred chHHHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHh-CCEEEEecCChH---------HHHHHHHHCCCCEEe
Confidence 444445555555555544332 2244445555555566 899999755332 456677888999874
No 362
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=34.27 E-value=1.4e+02 Score=22.01 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 15 PSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
..++..+++|+++|+....+|+++|
T Consensus 170 ~~~eRiar~AFe~A~~rrkkVt~v~ 194 (363)
T 1cnz_A 170 FEIERIARIAFESARKRRRKVTSID 194 (363)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3467889999999988877888888
No 363
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=34.25 E-value=89 Score=21.36 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEecc
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMGSR 128 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg~~ 128 (164)
.++++++...+.+..+...+. |.+...=...+.+ .++|.+|+|+.
T Consensus 173 ki~~lr~~~~~~~~~~~I~vd-GGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 173 RVIQVEKRLGNRRVEKLINID-GSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHHGGGGGGCEEEEE-SSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 334455555555555554444 4443444445566 78999999965
No 364
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.19 E-value=69 Score=18.47 Aligned_cols=43 Identities=0% Similarity=-0.051 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...+.+.+.+.+.|..+. .-...++..+...+.++|+|++...
T Consensus 17 ~~~~~l~~~L~~~g~~v~----~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVE----IAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp HHHHHHHHHHHHTTCEEE----EESSHHHHHHHHHHTCCSEEEEESC
T ss_pred HHHHHHHHHHHHCCcEEE----EeCCHHHHHHHHHhcCCCEEEEecC
Confidence 444555555655555433 2223445566677788999999865
No 365
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=34.08 E-value=77 Score=18.97 Aligned_cols=70 Identities=6% Similarity=-0.058 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhc-CCceEEEEecCChhHHHHHHHhh-CCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeC
Q 031195 82 DALDLLDTASRQK-EANIVAKIYWGDARERLLEAIED-LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~-~~~~~~~~~~g~~~~~I~~~a~~-~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~ 158 (164)
...+.+...+... |.. .+..-+..++.++..++ ..+|++++...-... .+ -.....+-... .+||+++-.
T Consensus 14 ~~~~~l~~~L~~~~g~~---~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~ 86 (154)
T 2qsj_A 14 LIRAGAKNLLEGAFSGM---RVEGAETVSDALAFLEADNTVDLILLDVNLPDA-EA---IDGLVRLKRFDPSNAVALISG 86 (154)
T ss_dssp HHHHHHHHHHHHHCTTE---EEEEESSHHHHHHHHHTTCCCSEEEECC-------C---HHHHHHHHHHCTTSEEEEC--
T ss_pred HHHHHHHHHHHhCCCce---EEEEecCHHHHHHHHhccCCCCEEEEeCCCCCC-ch---HHHHHHHHHhCCCCeEEEEeC
Confidence 3444455555544 431 12222334455566666 789999998643221 11 11234444433 488888754
No 366
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=34.06 E-value=53 Score=24.18 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCccc------ch------hc-----ccchhHH
Q 031195 83 ALDLLDTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTV------RR------II-----LGSVSNY 144 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~------~~------~~-----~~s~~~~ 144 (164)
.+.++.+.+.+.+.-+=..-+.+ ...++|++.|++.+..+|+-.+.+.... .. .+ +...+..
T Consensus 16 ~~~~ll~~A~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~ 95 (358)
T 1dos_A 16 DVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQ 95 (358)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHH
Confidence 34445555555555544333334 7899999999999999998876652211 11 01 1234455
Q ss_pred HhhcCCccEEEEeCCC
Q 031195 145 VMTHAPCPVTIVKDPS 160 (164)
Q Consensus 145 i~~~~~~pVliv~~~~ 160 (164)
+..+.++||.+-=++.
T Consensus 96 ~A~~~~VPVaLHlDHg 111 (358)
T 1dos_A 96 MAEHYGVPVILHTDHC 111 (358)
T ss_dssp HHHHHTCEEEEEECCC
T ss_pred HHHHCCCCEEEECCCC
Confidence 6677889988765543
No 367
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=33.70 E-value=1.1e+02 Score=20.81 Aligned_cols=32 Identities=6% Similarity=-0.112 Sum_probs=22.4
Q ss_pred hhHHHHHHHhhCCCCEEEEeccCCcccchhcc
Q 031195 107 ARERLLEAIEDLKLDSLVMGSRGLGTVRRIIL 138 (164)
Q Consensus 107 ~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~ 138 (164)
..+.|.+..++.++|+|+......+.......
T Consensus 85 ~~~~l~~~ir~~~PdvV~t~~~~d~H~DH~~~ 116 (242)
T 2ixd_A 85 YIREIVKVIRTYKPKLVFAPYYEDRHPDHANC 116 (242)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSCSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCChhHHHH
Confidence 46788888999999999876554444444333
No 368
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=33.70 E-value=88 Score=19.87 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
+.+...+++.|+++++... +...+++..+..++|+++.+.
T Consensus 30 dl~~~~~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 30 DLWAAIAKELKLDYELKPM---DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp HHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHhCCEEEEEEC---CHHHHHHHHhCCCCCEEEEcC
Confidence 4444555556788887653 466788888899999987653
No 369
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=33.58 E-value=1.3e+02 Score=21.90 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+...... .....++.....++|-||+... .......+...+.||+++-.
T Consensus 40 ~~l~~gi~~~a~~~g~~~~i~~~~--~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 40 RQVVEGVGEYLQASQSEWDIFIEE--DFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECC---CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEecC--CccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEecC
Confidence 466777888888888776654422 2234466677788999998321 11123456677899998853
No 370
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=33.49 E-value=1.3e+02 Score=21.38 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEec--C------------ChhHHHHHHHhhCCCCEEEEec---cCCcccchhcccchhHH
Q 031195 82 DALDLLDTASRQKEANIVAKIYW--G------------DARERLLEAIEDLKLDSLVMGS---RGLGTVRRIILGSVSNY 144 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~--g------------~~~~~I~~~a~~~~~dlivlg~---~~~~~~~~~~~~s~~~~ 144 (164)
+.-.++.+.+...|+.++.++.. | .-.++..+++++.++|.|.++- |+.......+--...+.
T Consensus 121 ~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~ 200 (288)
T 3q94_A 121 ETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQ 200 (288)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHH
Confidence 34446677788889999988754 1 1257888999999999999952 33222111122234455
Q ss_pred HhhcCCccEEE
Q 031195 145 VMTHAPCPVTI 155 (164)
Q Consensus 145 i~~~~~~pVli 155 (164)
|-...++|+++
T Consensus 201 I~~~v~vpLVl 211 (288)
T 3q94_A 201 VRDFTGVPLVL 211 (288)
T ss_dssp HHHHHCSCEEE
T ss_pred HHHhcCCCEEE
Confidence 55556788665
No 371
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=33.28 E-value=79 Score=18.89 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
..-+.+.+.+...|++++..-....... .-.++|.|++|++..+
T Consensus 14 ~iA~~ia~~l~~~g~~v~~~~~~~~~~~------~l~~~d~iiig~pty~ 57 (138)
T 5nul_A 14 KMAELIAKGIIESGKDVNTINVSDVNID------ELLNEDILILGCSAMT 57 (138)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEGGGCCHH------HHTTCSEEEEEECCBT
T ss_pred HHHHHHHHHHHHCCCeEEEEEhhhCCHH------HHhhCCEEEEEcCccC
Confidence 4445566666666777765444332222 2245999999987544
No 372
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=33.23 E-value=42 Score=23.40 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=24.1
Q ss_pred ceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 97 NIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 97 ~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
+++..+..=++..++++.|.+.++|+||.-.
T Consensus 37 ~V~~I~~alD~t~~vi~eAi~~gadlIitHH 67 (267)
T 2fyw_A 37 GIQRVMVALDIREETVAEAIEKGVDLIIVKH 67 (267)
T ss_dssp BCSEEEEESCCCHHHHHHHHHTTCSEEEESS
T ss_pred ccCEEEEEEcCCHHHHHHHHHCCCCEEEECC
Confidence 3444444458899999999999999998853
No 373
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=33.22 E-value=47 Score=23.61 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE-EeC
Q 031195 111 LLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI-VKD 158 (164)
Q Consensus 111 I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli-v~~ 158 (164)
+++.+.+.+.|.|++|+.+-+.+... ...+...+=+..+.||++ .||
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fPP 105 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFPP 105 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECCC
Confidence 66777788999999994333322222 223445444448899999 883
No 374
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=33.17 E-value=68 Score=18.09 Aligned_cols=70 Identities=6% Similarity=-0.039 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
...+.+...+...|..+. .-+..++..+......+|++++...-.+ ..++ .....+-.. ..+|++++-..
T Consensus 11 ~~~~~l~~~l~~~g~~v~----~~~~~~~a~~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 11 LLRHHLKVQIQDAGHQVD----DAEDAKEADYYLNEHIPDIAIVDLGLPD-EDGL---SLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHHHHHTTCEEE----EESSHHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHHHHhhcCCEEE----EeCCHHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEecC
Confidence 334445555555554432 2233445566677788999999754322 1111 133444433 34888888543
No 375
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.10 E-value=1.3e+02 Score=21.21 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhH---HHHHHHhh-CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARE---RLLEAIED-LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~---~I~~~a~~-~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
....+.+.+.+.+.|..+......++..+ .|.+.... .++|-||+.. ...... ..-..+...++||+.+
T Consensus 20 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~------~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 20 VSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAP------QILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHH------HHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHH------HHHHHHHhCCCcEEEE
Confidence 46677778888888888776654455543 34444444 6899999863 211111 1123455678999998
Q ss_pred eCC
Q 031195 157 KDP 159 (164)
Q Consensus 157 ~~~ 159 (164)
-..
T Consensus 93 ~~~ 95 (350)
T 3h75_A 93 NSP 95 (350)
T ss_dssp ESC
T ss_pred cCC
Confidence 643
No 376
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=33.05 E-value=1.7e+02 Score=22.61 Aligned_cols=44 Identities=5% Similarity=-0.052 Sum_probs=26.4
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+.+.+.+..........+..+.-...+.+.+++.++|++|-+++
T Consensus 400 ~~~~~ll~~~~~~~~~~v~~~~d~~~l~~~i~~~~pDLiig~~~ 443 (519)
T 1qgu_B 400 KAMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSY 443 (519)
T ss_dssp HHHHHHHHHSTTCTTCEEEESCCHHHHHHHHHHHCCSEEEECGG
T ss_pred HHHHHHHHhcCCCCCCEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 33444444432222234555655667888888889999886654
No 377
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=32.97 E-value=93 Score=21.02 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=7.5
Q ss_pred HHHHHHhhCCCCEEEE
Q 031195 110 RLLEAIEDLKLDSLVM 125 (164)
Q Consensus 110 ~I~~~a~~~~~dlivl 125 (164)
.+.+...+.++|.|.+
T Consensus 39 ~~a~~~~~~G~~~i~v 54 (247)
T 3tdn_A 39 DWVVEVEKRGAGEILL 54 (247)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3444444445555544
No 378
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.92 E-value=1.1e+02 Score=20.64 Aligned_cols=33 Identities=6% Similarity=0.101 Sum_probs=21.9
Q ss_pred cCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEe
Q 031195 94 KEANIVAKIYWG-DARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 94 ~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg 126 (164)
.+++++...... +-.+..++.+++.++++||=|
T Consensus 128 l~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 128 FNLRLDQRSYITEEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp HTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEES
T ss_pred hCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECC
Confidence 356666655554 556777778888888886554
No 379
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=32.87 E-value=78 Score=19.62 Aligned_cols=35 Identities=0% Similarity=-0.010 Sum_probs=25.3
Q ss_pred cCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEecc
Q 031195 94 KEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 94 ~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.|++++....-. .-...|.+..++.++|+||--..
T Consensus 48 ~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 48 TGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred hCceEEEEEecCCCCcchHHHHHHCCCccEEEEccC
Confidence 578877643211 23457999999999999998765
No 380
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.84 E-value=67 Score=17.97 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~ 158 (164)
...+.+...+...|..+. ..+..++.++.....++|++++...-.+ ..+. .....+-.. ..+|++++-.
T Consensus 12 ~~~~~l~~~l~~~~~~v~----~~~~~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 12 NIRELLKEELQEEGYEID----TAENGEEALKKFFSGNYDLVILDIEMPG-ISGL---EVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp HHHHHHHHHHHHTTCEEE----EESSHHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCEEE----EeCCHHHHHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHccCCCCeEEEEEC
Confidence 334445555555555432 2223445556667778999999864322 1111 123434333 3478888743
No 381
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=32.72 E-value=82 Score=22.60 Aligned_cols=68 Identities=16% Similarity=0.091 Sum_probs=42.1
Q ss_pred HHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhcCCccEEEEe
Q 031195 89 TASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~~~~pVliv~ 157 (164)
+.+.+.+.-+=..-..+ ...++|++.|++.+..+|+-.+.+.....+ -.+......+.. .++||.+-=
T Consensus 10 ~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValHl 79 (305)
T 1rvg_A 10 KKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVHL 79 (305)
T ss_dssp HHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEEE
T ss_pred HHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEEC
Confidence 33344444333323333 689999999999999999887765322211 123455666666 889987753
No 382
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=32.66 E-value=26 Score=26.42 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=26.8
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccCCcccchhcccchhHHHhhcCC
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP 150 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~ 150 (164)
|+-.+.+.+.++ +.++.+|.+.+.+.......-.......++++..
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~ 159 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAARCP 159 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTTCCTTHHHHHHHHHHHTTCC
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCccccHHHHHHHHHHHHHHHhh
Confidence 655666666665 5688888888776543222222334555666543
No 383
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=32.63 E-value=77 Score=18.58 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
...+.+...+...|..+. ...+ ..+.++......+|++++...-.+ ..++ .....+-.. ..+||+++-.
T Consensus 14 ~~~~~l~~~L~~~g~~v~---~~~~-~~~al~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPI---TAFS-GEECLEALNATPPDLVLLDIMMEP-MDGW---ETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESS-HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEES
T ss_pred HHHHHHHHHHHHcCceEE---EeCC-HHHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEEC
Confidence 344445555555555432 2233 344556667778999999864322 1111 123444332 3588988854
Q ss_pred C
Q 031195 159 P 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 86 ~ 86 (138)
T 3c3m_A 86 K 86 (138)
T ss_dssp S
T ss_pred C
Confidence 3
No 384
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=32.51 E-value=1.2e+02 Score=20.69 Aligned_cols=72 Identities=7% Similarity=0.093 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhcCC-ceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEA-NIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~-~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|. .+......++.. ...++.....++|-||+......... ...+ .+...+.||+++-
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~-~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 18 SVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAG-----TVIE-KARGQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHH-----HHHH-HHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhH-----HHHH-HHHHCCCcEEEec
Confidence 4667777888888886 655433334443 34556666778999998643221111 1122 3456789999885
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 92 ~ 92 (309)
T 2fvy_A 92 K 92 (309)
T ss_dssp S
T ss_pred C
Confidence 4
No 385
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=32.43 E-value=82 Score=18.81 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=22.5
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
..|.|.....+. .+....+-.++.|..+.+++-.
T Consensus 2 sqifvvfssdpe---ilkeivreikrqgvrvvllysd 35 (162)
T 2l82_A 2 SQIFVVFSSDPE---ILKEIVREIKRQGVRVVLLYSD 35 (162)
T ss_dssp CEEEEEEESCHH---HHHHHHHHHHHTTCEEEEEECC
T ss_pred ceEEEEecCCHH---HHHHHHHHHHhCCeEEEEEecC
Confidence 456666655443 4555566667789999988853
No 386
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=32.39 E-value=44 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=10.0
Q ss_pred HHHHHHHhhCCCCEEEE
Q 031195 109 ERLLEAIEDLKLDSLVM 125 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivl 125 (164)
+.+.+.+...++.+.++
T Consensus 82 ~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 82 KVIIESLAKLHVEVLTI 98 (141)
T ss_dssp HHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHcCCeEEEC
Confidence 45556666666665555
No 387
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=32.36 E-value=1e+02 Score=20.03 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg 126 (164)
.++.+.+.+++.|..+-..+.. .++. ...+.+.+.++|.|.+.
T Consensus 91 ~~~~~~~~~~~~g~~~~v~~~~~~t~~-~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 91 TIQSCIRAAKEAGKQVVVDMICVDDLP-ARVRLLEEAGADMLAVH 134 (211)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTCSSHH-HHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHHcCCCEEEEc
Confidence 3455555666666654432222 2333 33455666689987664
No 388
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=32.36 E-value=73 Score=21.67 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=27.6
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.+..+.+++.|..+-..+.-+++.+.+..+... +|+|.+.+-
T Consensus 96 ~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~--~D~VlvmsV 137 (231)
T 3ctl_A 96 FRLIDEIRRHDMKVGLILNPETPVEAMKYYIHK--ADKITVMTV 137 (231)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGG--CSEEEEESS
T ss_pred HHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhc--CCEEEEeee
Confidence 455556666677766655446777777777765 888866443
No 389
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=32.18 E-value=83 Score=18.81 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhh-cCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQ-KEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+.. .|..+.. ...+ .+...+...+..+|+|++...-.+ ..++ .....+-... .+||+++-..
T Consensus 16 ~~~~~l~~~L~~~~~~~v~~--~~~~-~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 16 IVREGYRRLIERRPGYAVVA--EAAD-AGEAYRLYRETTPDIVVMDLTLPG-PGGI---EATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp HHHHHHHHHHTTSTTEEEEE--EESS-HHHHHHHHHTTCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHHHhhCCCcEEEE--EeCC-HHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCeEEEEECC
Confidence 444555666655 3433221 2233 445566777778999999864322 1111 1234444433 4888887543
No 390
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism, hydrolase manganese; 1.85A {Escherichia coli} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A*
Probab=32.01 E-value=1.4e+02 Score=21.72 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+.+.+..+..|.++.. +-.||++.+|.......++|++ ||..
T Consensus 170 ~~lI~eiR~~GArI~l-i~DGDVa~ai~~~~~~sgvD~~-~GiG 211 (338)
T 3big_A 170 DAVIAEMQQLGVRVFA-IPDGDVAASILTCMPDSEVDVL-YGIG 211 (338)
T ss_dssp HHHHHHHHHHTCEEEE-ESSCSHHHHHHTTCTTSSCCEE-EEEE
T ss_pred HHHHHHHHHcCCeEEE-eCCccHHHHHHHhcCCCCeeEE-EECC
Confidence 4455666667777775 4558999888888788899985 4433
No 391
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=31.91 E-value=91 Score=22.58 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHhhhcCCceEEEEecC-ChhHHHHHHHhhCCCCEEEEeccCCcccch-hcccchhHHHhhc-CCccEEEEe
Q 031195 88 DTASRQKEANIVAKIYWG-DARERLLEAIEDLKLDSLVMGSRGLGTVRR-IILGSVSNYVMTH-APCPVTIVK 157 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dlivlg~~~~~~~~~-~~~~s~~~~i~~~-~~~pVliv~ 157 (164)
.+.+.+.+.-+=..-..+ ...++|++.|++.+..+|+-.+.+.....+ -++.........+ .++||.+-=
T Consensus 10 l~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHl 82 (323)
T 2isw_A 10 LGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHL 82 (323)
T ss_dssp HHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 334444444443323333 789999999999999999887665321111 1223455556666 789987753
No 392
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=31.74 E-value=94 Score=20.03 Aligned_cols=34 Identities=6% Similarity=0.094 Sum_probs=18.8
Q ss_pred hcCCceEEEEecCCh---hHHHHHHHhhCCCCEEEEe
Q 031195 93 QKEANIVAKIYWGDA---RERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 93 ~~~~~~~~~~~~g~~---~~~I~~~a~~~~~dlivlg 126 (164)
+.|.++...++.++. .++|.+.+.+.++|+||+.
T Consensus 39 ~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 39 ITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp CSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred hCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 678877444333332 3344444442369998874
No 393
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=31.73 E-value=97 Score=20.86 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcCCc
Q 031195 18 KFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKEAN 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (164)
...++.++++|+..|++...++.-.... .... +...+...+.++.+.+.+++.|+.
T Consensus 83 ~~~~~~~i~~a~~lG~~~v~~~~g~~~~-------------------~~~~-----~~~~~~~~~~l~~l~~~a~~~gv~ 138 (278)
T 1i60_A 83 ITEFKGMMETCKTLGVKYVVAVPLVTEQ-------------------KIVK-----EEIKKSSVDVLTELSDIAEPYGVK 138 (278)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCBCSS-------------------CCCH-----HHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------CCCH-----HHHHHHHHHHHHHHHHHHHhcCCE
Confidence 4567778888888888877765211100 0000 111233356777777788888887
Q ss_pred eEEEEecCC-----hhHHHHHHHhhCC
Q 031195 98 IVAKIYWGD-----ARERLLEAIEDLK 119 (164)
Q Consensus 98 ~~~~~~~g~-----~~~~I~~~a~~~~ 119 (164)
+-.+...+. ..+.+.+.++..+
T Consensus 139 l~lEn~~~~~~~~~~~~~~~~l~~~~~ 165 (278)
T 1i60_A 139 IALEFVGHPQCTVNTFEQAYEIVNTVN 165 (278)
T ss_dssp EEEECCCCTTBSSCSHHHHHHHHHHHC
T ss_pred EEEEecCCccchhcCHHHHHHHHHHhC
Confidence 766654432 3455666666543
No 394
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=31.63 E-value=1.5e+02 Score=21.72 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
.++..+++|+++|+....+|+++|
T Consensus 166 ~~eRiar~AFe~A~~rrkkVt~v~ 189 (358)
T 1a05_A 166 EIRRIAHVAFRAAQGRRKQLCSVD 189 (358)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEE
Confidence 467889999999988877888888
No 395
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=31.30 E-value=1.2e+02 Score=20.43 Aligned_cols=71 Identities=10% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++.. ...++.....++|-||+....... .....+.+..+.||+++-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-------~~~~~l~~~~~iPvV~~~~ 95 (289)
T 1dbq_A 23 AEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMDW 95 (289)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCH-------HHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCH-------HHHHHHHhccCCCEEEEcc
Confidence 4566777777777787766543334443 345556667789988885432211 1123232236789888854
No 396
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=31.15 E-value=1.3e+02 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHhcCCC-------------CCeEEEEE
Q 031195 16 SSKFALSWAVNNLLDK-------------GDTLYIIH 39 (164)
Q Consensus 16 ~~~~al~~a~~la~~~-------------~~~l~ll~ 39 (164)
.+...+++|+++|+.. ..+|+++|
T Consensus 163 ~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~ 199 (366)
T 3ty4_A 163 ASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIH 199 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEE
Confidence 4677888888888765 56788888
No 397
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.10 E-value=69 Score=22.09 Aligned_cols=40 Identities=8% Similarity=-0.093 Sum_probs=23.9
Q ss_pred HHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 87 LDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
..+..++.|.+.-..+.-+.+.+.+..+... +|+|.+.+-
T Consensus 126 ~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~--vD~VlvMsV 165 (246)
T 3inp_A 126 SLQLIKSFGIQAGLALNPATGIDCLKYVESN--IDRVLIMSV 165 (246)
T ss_dssp HHHHHHTTTSEEEEEECTTCCSGGGTTTGGG--CSEEEEECS
T ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHhc--CCEEEEeee
Confidence 3334455566655544446677777666665 788776553
No 398
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=31.06 E-value=1.1e+02 Score=19.66 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=46.2
Q ss_pred cccchHHHHHHHHHHhhhcCCceEEEEe--cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC-cc
Q 031195 76 NVKTDIDALDLLDTASRQKEANIVAKIY--WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP-CP 152 (164)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~-~p 152 (164)
.........+.+.+.+.+.|++++..-- +|...+.|-+.... +|-||+..-..+..+ --....+...+ .|
T Consensus 29 G~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~--~dgiIINpgA~THtS-----vAlrDAl~~v~~~P 101 (156)
T 1gtz_A 29 GSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLN--HCGIVINPAAYSHTS-----VAILDALNTCDGLP 101 (156)
T ss_dssp CSCCHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHH--CSEEEEECTTHHHHC-----HHHHHHHHTSTTCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhc--CcEEEECchhhcccc-----HHHHHHHHhcCCCC
Confidence 3444567778888888888887775332 25556666665554 999999743322111 11234556666 88
Q ss_pred EEEEe
Q 031195 153 VTIVK 157 (164)
Q Consensus 153 Vliv~ 157 (164)
++=|+
T Consensus 102 ~VEVH 106 (156)
T 1gtz_A 102 VVEVH 106 (156)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 399
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=31.03 E-value=1.1e+02 Score=19.78 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh------------CCCCEEEEeccCCcccchhcccchhHHHhh-
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIED------------LKLDSLVMGSRGLGTVRRIILGSVSNYVMT- 147 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~------------~~~dlivlg~~~~~~~~~~~~~s~~~~i~~- 147 (164)
...++.+...+...|.. .. ....+..+++-...+. ..+|+|++...-.. ..++ .+...|-.
T Consensus 71 ~~~~~~l~~~L~~~g~~-~v-~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~-~~G~---el~~~lr~~ 144 (206)
T 3mm4_A 71 FISRKVATGKLKKMGVS-EV-EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPE-MDGY---EATREIRKV 144 (206)
T ss_dssp HHHHHHHHHHHHHTTCS-EE-EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSS-SCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-ee-eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCC-CCHH---HHHHHHHhh
Confidence 45556667777766652 11 2223444444333332 37999999854221 1111 12333333
Q ss_pred ----cCCccEEEEeCC
Q 031195 148 ----HAPCPVTIVKDP 159 (164)
Q Consensus 148 ----~~~~pVliv~~~ 159 (164)
...+||+++-..
T Consensus 145 ~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 145 EKSYGVRTPIIAVSGH 160 (206)
T ss_dssp HHTTTCCCCEEEEESS
T ss_pred hhhcCCCCcEEEEECC
Confidence 256899998654
No 400
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=30.79 E-value=24 Score=27.22 Aligned_cols=25 Identities=8% Similarity=0.124 Sum_probs=12.4
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccC
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRG 129 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~ 129 (164)
|+-.+.+.+.++ +.++.++.+.+.+
T Consensus 104 GdDi~~v~~~~~~~~g~pVi~v~tpg 129 (511)
T 2xdq_B 104 QEDLQNFVRRASLSTTADVLLADVNH 129 (511)
T ss_dssp CCCHHHHHHHHHHHCSSEEEECCCCT
T ss_pred ccCHHHHHHHhhhccCCCEEEeeCCC
Confidence 444445555544 3355555555544
No 401
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=30.72 E-value=72 Score=20.77 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=18.7
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEec
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINP 42 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~ 42 (164)
+++++.|+.+. ..+++.+-.+.. .+..+++..
T Consensus 2 ~li~a~d~~~~-~~~~~~~~~~~~----~v~~iev~~ 33 (207)
T 3ajx_A 2 KLQVAIDLLST-EAALELAGKVAE----YVDIIELGT 33 (207)
T ss_dssp EEEEEECCSCH-HHHHHHHHHHGG----GCSEEEECH
T ss_pred eEEEEeCCCCH-HHHHHHHHHhhc----cCCEEEECc
Confidence 78999998653 335555555433 233466643
No 402
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=30.60 E-value=1.6e+02 Score=22.74 Aligned_cols=26 Identities=8% Similarity=-0.035 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHhcCCC-CCeEEEEEE
Q 031195 15 PSSKFALSWAVNNLLDK-GDTLYIIHI 40 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~-~~~l~ll~v 40 (164)
..++..+++|+++|+.. ..+|+++|=
T Consensus 165 ~~ieRIar~AFe~A~~r~rkkVT~V~K 191 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEGRKKVHCATK 191 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 34678899999999886 577888883
No 403
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=30.50 E-value=1.4e+02 Score=20.90 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEe--cC-ChhHHHHHHHhhCCCCEEEEecc
Q 031195 82 DALDLLDTASRQKEANIVAKIY--WG-DARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~--~g-~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
...+.+.+.+.+.|+++..... .+ .-...+++.+...++|.|++...
T Consensus 154 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~ 203 (358)
T 3hut_A 154 SSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMA 203 (358)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccC
Confidence 4445555566666665543221 12 22333444444456777766543
No 404
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=30.45 E-value=1.3e+02 Score=20.42 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+....... ...+ .+...+.||+++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~l~~~~iPvV~~~~ 95 (287)
T 3bbl_A 24 DQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-------PRVQ-FLLKQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-------HHHH-HHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-------HHHH-HHHhcCCCEEEECC
Confidence 466777777788777765543222332 3456777777889999886433211 1223 34456789888854
No 405
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=30.33 E-value=58 Score=21.67 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=15.6
Q ss_pred CceEEEEeCCCccHHHHHHHHHHh
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNN 27 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~l 27 (164)
..++.++.|+.+... +++.+-.+
T Consensus 6 ~~~lilalD~~~~~~-~~~~~~~~ 28 (218)
T 3jr2_A 6 KPMIQIALDQTNLTD-AVAVASNV 28 (218)
T ss_dssp CCEEEEEECCSSHHH-HHHHHHHH
T ss_pred CCCeEEEeCCCCHHH-HHHHHHHh
Confidence 578999999976433 45555543
No 406
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=30.21 E-value=1.5e+02 Score=21.01 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+....... ..-..+...+.||+++
T Consensus 86 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~--------~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 86 AQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE--------QTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH--------HHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH--------HHHHHHHhCCCCEEEE
Confidence 466777888888888877654433443 3356666777889999886432211 1233456778999988
No 407
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase; fructose-1,6-/sedoheptulose-1,7-bisphosphatase, hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB: 3rpl_A*
Probab=30.07 E-value=1.2e+02 Score=22.42 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
+.+.+..++.|.++.. +-.||++.+|.-.....++|+++ |..
T Consensus 214 ~~lI~eiR~~GARV~L-I~DGDVa~ai~~~~~~sgvD~~m-GiG 255 (379)
T 3roj_A 214 KELIQEIRNAGARVRL-ISDGDVSAAISCAFSGTNIHALM-GIG 255 (379)
T ss_dssp HHHHHHHHHHTCEEEE-ESSCHHHHHHHTTSBTSSCCEEE-EEE
T ss_pred HHHHHHHHHcCCeEEE-eCcCcHHHHHHHhcCCCCeeEEE-ECC
Confidence 4455666666777775 45588988888777788899865 544
No 408
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=29.91 E-value=1.2e+02 Score=20.50 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEe-cc
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMG-SR 128 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg-~~ 128 (164)
+-.+++++...+.+..+...+.-|=..+.+.+ +.+.++|.+|+| +.
T Consensus 152 ~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~-~~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 152 DKLAELKAWREREGLEYEIEVDGSCNQATYEK-LMAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCCSTTTHHH-HHHHTCCEEEECTTT
T ss_pred HHHHHHHHHHhccCCCceEEEECCcCHHHHHH-HHHcCCCEEEEccHH
Confidence 33345555555555566554544422334444 455589999999 54
No 409
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=29.84 E-value=88 Score=21.15 Aligned_cols=75 Identities=7% Similarity=-0.133 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcCCceE
Q 031195 20 ALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKEANIV 99 (164)
Q Consensus 20 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 99 (164)
.++.++++|+..|++...+++.+... ... ....+...+.+..+.+.+++.|+.+-
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~--------------------~~~-----~~~~~~~~~~l~~l~~~a~~~Gv~l~ 139 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMD--------------------EEP-----VRYISQLARRIRQVAVELLPLGMRVG 139 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEES--------------------SCH-----HHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCC--------------------Ccc-----hhhHHHHHHHHHHHHHHHHHcCCEEE
Confidence 45668888888899877765432210 000 01123345677777888888888777
Q ss_pred EEEec-----------CChhHHHHHHHhhCC
Q 031195 100 AKIYW-----------GDARERLLEAIEDLK 119 (164)
Q Consensus 100 ~~~~~-----------g~~~~~I~~~a~~~~ 119 (164)
.+... ....+.+.+.++..+
T Consensus 140 lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v~ 170 (281)
T 3u0h_A 140 LEYVGPHHLRHRRYPFVQSLADLKTFWEAIG 170 (281)
T ss_dssp EECCCCGGGCCSSEECCCSHHHHHHHHHHHC
T ss_pred EEeccccccccccccccCCHHHHHHHHHHcC
Confidence 66431 234455666666643
No 410
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=29.83 E-value=1.2e+02 Score=19.86 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
...+.+...+++.|+++++... +...+++..+..++|+++.+.
T Consensus 48 ~~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 90 (249)
T 4f3p_A 48 FDLDLWAEIAKGAGWTYKIQPM---DFAGLIPALQTQNIDVALSGM 90 (249)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEE---CGGGHHHHHHTTSCSEEEEEE
T ss_pred EhHHHHHHHHHHcCCceEEEec---CHHHHHHHHHCCCCCEEEecc
Confidence 3444555566666888887664 456778888899999976553
No 411
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=29.62 E-value=1.3e+02 Score=20.32 Aligned_cols=69 Identities=7% Similarity=0.017 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
....+.+.+.+.+.|..+......+++. ..+++.....++|-||+...... . ...+.+ . .++||+.+-.
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----~~~~~l-~-~~iPvV~~~~ 94 (285)
T 3c3k_A 24 AAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE--L-----PELQNI-I-GAFPWVQCAE 94 (285)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG--H-----HHHHHH-H-TTSSEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC--h-----HHHHHH-h-cCCCEEEEcc
Confidence 4566677777777787766543334443 34566666778999888533211 1 122333 4 7799988854
No 412
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=29.38 E-value=1.3e+02 Score=20.30 Aligned_cols=54 Identities=7% Similarity=0.041 Sum_probs=33.0
Q ss_pred HhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhH
Q 031195 90 ASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSN 143 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~ 143 (164)
..++.|.++-..+.-+++.+.+..+.....+|+|.+.+-..+...+.+..+..+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ 162 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMG 162 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHH
Confidence 555667766665544678777877777224999988775554333334444444
No 413
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=29.36 E-value=58 Score=23.10 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=21.5
Q ss_pred CCCCceEEEEeCCCcc-HHHHHHHHHHhcCCCCCeEEE
Q 031195 1 MAGDRKIGVALDFSPS-SKFALSWAVNNLLDKGDTLYI 37 (164)
Q Consensus 1 m~~~~~iLv~vd~s~~-~~~al~~a~~la~~~~~~l~l 37 (164)
|.+|++|++.+..... ....++...+..+..+..+.+
T Consensus 1 m~~m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~ 38 (307)
T 1u0t_A 1 MTAHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRV 38 (307)
T ss_dssp ----CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEE
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 7778999998886543 344566666666666766554
No 414
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.19 E-value=92 Score=18.38 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~ 158 (164)
...+.+...+...+..++. +.......+.++.+....+|++++...-.+ ..++ .+...+-.. ..+|++++-.
T Consensus 13 ~~~~~l~~~L~~~~~~~~~-~~~~~~~~~al~~~~~~~~dlvllD~~lp~-~~g~---~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 13 LTRDGLIANINWKALSFDQ-IDQADDGINAIQIALKHPPNVLLTDVRMPR-MDGI---ELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HHHHHHHHHCCGGGSCCSE-EEEESSHHHHHHHHTTSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHHHHHHccCCcEE-eeecccHHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCcEEEEeC
Confidence 3344455555432222222 112233455556677778999999854322 1111 123444333 3488888854
No 415
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=29.17 E-value=15 Score=21.14 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...+.+.+.+++.+ +......|+.+.. ++-...++|++|+.....+... .......+-...++||=++.+
T Consensus 11 ~l~~~i~~l~~~~~--v~~v~LFGS~arG--~~~~~SDiDl~V~~~~~~~~~~---~~~l~~~l~~~l~~~vDlv~~ 80 (98)
T 1wot_A 11 ARREAVLSLCARHG--AVRVRVFGSVARG--EAREDSDLDLLVAFEEGRTLLD---HARLKLALEGLLGVRVDIVSE 80 (98)
T ss_dssp HHHHHHHHHHHHHT--CSSCEECSHHHHT--CCCTTCCCEEEECCCSSCCHHH---HHHHHHHHHHHSCSCCEEEET
T ss_pred HHHHHHHHHHHHcC--CcEEEEEccccCC--CCCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHHcCCCEEEEEh
Confidence 34444455555554 3445667876654 2334578999997654333221 112334443334555555544
No 416
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.12 E-value=74 Score=20.45 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=29.7
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
..+.++|.++.|..+...++ +++.|+..|+++..+.-.
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 35679999999999988765 556688899988877643
No 417
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=29.08 E-value=67 Score=21.28 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEec----------CChhHHHHHHHhhCCCCEEEEe
Q 031195 82 DALDLLDTASRQKEANIVAKIYW----------GDARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~----------g~~~~~I~~~a~~~~~dlivlg 126 (164)
...+.+...++..|+++++.... ......++...+..++|+++-+
T Consensus 35 ~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~ 89 (259)
T 3g3k_A 35 YCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89 (259)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSS
T ss_pred EHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEee
Confidence 44455566666678888887653 2357788889999999998644
No 418
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=29.02 E-value=1.3e+02 Score=20.07 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++.. ...++.....++|-||+...... . ...+ .+...+.||+++-.
T Consensus 19 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--~-----~~~~-~l~~~~iPvV~~~~ 90 (275)
T 3d8u_A 19 AHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS--Q-----RTHQ-LLEASNTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC--H-----HHHH-HHHHHTCCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--H-----HHHH-HHHhCCCCEEEEee
Confidence 4566667777777776655433333432 34556666678887776533221 1 1122 23445788887743
No 419
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=28.98 E-value=59 Score=23.80 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=9.7
Q ss_pred HHHHHHHhhCCCCEEEEe
Q 031195 109 ERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg 126 (164)
+.+++.+.+.++|+|+++
T Consensus 50 ~~~v~~~~~~~~D~Vlia 67 (386)
T 3av0_A 50 KLCIKKILEIKPDVVLHS 67 (386)
T ss_dssp HHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 344455555556666554
No 420
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=28.95 E-value=86 Score=19.42 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=25.9
Q ss_pred HhhhcCCceEEEEec--C-C--hhHHHHHHHhhCCCCEEEEeccC
Q 031195 90 ASRQKEANIVAKIYW--G-D--ARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~--g-~--~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
++++.|++++....- | + ....|.+..++.++|+||-...+
T Consensus 62 ~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 62 WLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp HHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred HHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC
Confidence 344567777654322 2 2 00369999999999999987654
No 421
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=28.83 E-value=1.6e+02 Score=20.97 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=32.3
Q ss_pred ChhHHH--HHHHhhCCC-CEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 106 DARERL--LEAIEDLKL-DSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 106 ~~~~~I--~~~a~~~~~-dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
+..++| .+.+++.++ |-+.+..+.......--+-..-..|...++.||+++..+
T Consensus 87 ~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (311)
T 3h5d_A 87 DTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIP 143 (311)
T ss_dssp SHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 444444 445777776 988777654332221111123467888889999998653
No 422
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=28.79 E-value=1.3e+02 Score=20.07 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhcCCceEEE-EecCChhHHHHHHHhhCCCCEEEEecc-CCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAK-IYWGDARERLLEAIEDLKLDSLVMGSR-GLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dlivlg~~-~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.+++--.. ...|..+....+.. .+..+|+++.+ +.......-++.-..+-+.+...+|+.-.+
T Consensus 29 ~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH 106 (201)
T 1vp8_A 29 EETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSH 106 (201)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEec
Confidence 567777778888877652221 12255555555544 45889999843 232333344556666677777787776543
No 423
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=28.76 E-value=1.2e+02 Score=19.42 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh--CCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 78 KTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIED--LKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
.......+.+.+.+.+.|++++. ...+-..++++..++ .++|-||+..-..+..+ --....+...+.|++=
T Consensus 26 ~Tl~di~~~l~~~a~~~g~~l~~--~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtS-----vAlrDAl~~v~~P~VE 98 (154)
T 1uqr_A 26 QTLSDIEQHLQQSAQAQGYELDY--FQANGEESLINRIHQAFQNTDFIIINPGAFTHTS-----VAIRDALLAVSIPFIE 98 (154)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEE--EECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHC-----HHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEE--EeeCCHHHHHHHHHHhhhcCcEEEECcchhccch-----HHHHHHHHhCCCCEEE
Confidence 34567777888888888876664 444444444444333 25899999643322111 1123455566788877
Q ss_pred Ee
Q 031195 156 VK 157 (164)
Q Consensus 156 v~ 157 (164)
|+
T Consensus 99 VH 100 (154)
T 1uqr_A 99 VH 100 (154)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 424
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=28.62 E-value=1.4e+02 Score=20.45 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=25.5
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEe
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHIN 41 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~ 41 (164)
.++++|+++|.-.|..++..+.+.. +..+..+++.
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~ 59 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMP 59 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 5789999999888877666665543 3567777764
No 425
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=28.61 E-value=1.3e+02 Score=19.93 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=28.5
Q ss_pred HHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 85 DLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
+.+...+++.|+++++... +...+.+..+..++|+++-+.
T Consensus 57 dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 96 (259)
T 4dz1_A 57 ELFSSYCQSRHCKLNITEY---AWDGMLGAVASGQADVAFSGI 96 (259)
T ss_dssp HHHHHHHHHHTCEEEEEEC---CHHHHHHHHHHTSSSEEEEEE
T ss_pred HHHHHHHHHhCCeEEEEEc---CHHHHHHHHhCCCCCEEEECC
Confidence 4445556666888876543 567788888899999987653
No 426
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.49 E-value=89 Score=18.01 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhh-------CCCCEEEEeccCCcccchhcccchhHHHhhc---CC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIED-------LKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---AP 150 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~-------~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~ 150 (164)
....+.+...+...|..+.... ..+. ++.++...+ ..+|++++...-.+ ..++ .....+-.. ..
T Consensus 12 ~~~~~~l~~~L~~~~~~~~v~~-~~~~-~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~---~~~~~l~~~~~~~~ 85 (140)
T 1k68_A 12 KADIRLIQEALANSTVPHEVVT-VRDG-MEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGR---EVLAEIKSDPTLKR 85 (140)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEE-ECSH-HHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHH---HHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHhcCCCceEEE-ECCH-HHHHHHHHcccccccCCCCcEEEEecCCCc-ccHH---HHHHHHHcCccccc
Confidence 3455666677776666433222 2333 444555555 78999999865322 1111 234444443 35
Q ss_pred ccEEEEeCC
Q 031195 151 CPVTIVKDP 159 (164)
Q Consensus 151 ~pVliv~~~ 159 (164)
+|++++-..
T Consensus 86 ~pii~ls~~ 94 (140)
T 1k68_A 86 IPVVVLSTS 94 (140)
T ss_dssp SCEEEEESC
T ss_pred ccEEEEecC
Confidence 888888543
No 427
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=28.47 E-value=22 Score=21.19 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcCCceEEEEecC-ChhHHH-HHHHhhCCCCEEEEeccCC
Q 031195 84 LDLLDTASRQKEANIVAKIYWG-DARERL-LEAIEDLKLDSLVMGSRGL 130 (164)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~~~g-~~~~~I-~~~a~~~~~dlivlg~~~~ 130 (164)
-+.+++.+.+.|++++.+.... .+...+ .+.+.+ +|+|++.....
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~--AD~VIia~d~~ 68 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDVNI--GEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHH--CSEEEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhh--CCEEEEecccc
Confidence 3556667777777776655442 122222 133445 99999987643
No 428
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=28.46 E-value=1.5e+02 Score=20.45 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcCCceEEEEe-cCChhH--HHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAKIY-WGDARE--RLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~-~g~~~~--~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|.++..... .+++.+ ..++.....++|.||+......... ...+ .+...++||+.+-
T Consensus 16 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 16 SQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI-----PTIK-KALEMGIPVVTLD 89 (313)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH-----HHHH-HHHHCCCeEEEeC
Confidence 45666677777777877665332 234433 3455555678999998644322111 1122 3345789998885
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 90 ~ 90 (313)
T 2h3h_A 90 T 90 (313)
T ss_dssp S
T ss_pred C
Confidence 4
No 429
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=28.40 E-value=1.2e+02 Score=21.71 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=26.7
Q ss_pred CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
|...+...+....+ +|.||+-....+ ..+.+.+++++||+=
T Consensus 87 gEsl~DTarvls~~-~D~iviR~~~~~---------~~~~la~~~~vPVIN 127 (308)
T 1ml4_A 87 GESLRDTIKTVEQY-CDVIVIRHPKEG---------AARLAAEVAEVPVIN 127 (308)
T ss_dssp TCCHHHHHHHHTTT-CSEEEEEESSTT---------HHHHHHHTCSSCEEE
T ss_pred CCCHHHHHHHHHHh-CcEEEEecCChh---------HHHHHHHhCCCCEEe
Confidence 44444555555555 899999755443 456677888999863
No 430
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=28.34 E-value=1.8e+02 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHhcCCC-CCeEEEEEE
Q 031195 15 PSSKFALSWAVNNLLDK-GDTLYIIHI 40 (164)
Q Consensus 15 ~~~~~al~~a~~la~~~-~~~l~ll~v 40 (164)
..++..+++|+++|+.. ..+|+++|=
T Consensus 157 ~~~eRiar~AF~~A~~r~rkkVt~v~K 183 (349)
T 3blx_A 157 PKTERIARFAFDFAKKYNRKSVTAVHK 183 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 34678899999999886 567888883
No 431
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=28.33 E-value=1.5e+02 Score=20.54 Aligned_cols=29 Identities=24% Similarity=0.144 Sum_probs=17.7
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYI 37 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~l 37 (164)
..++.|+.|.... +.|..++...+..+..
T Consensus 27 ~~~LivALD~~~~-----~~al~l~~~l~~~v~~ 55 (255)
T 3ldv_A 27 DPKVIVALDYDNL-----ADALAFVDKIDPSTCR 55 (255)
T ss_dssp CCCEEEEECCSSH-----HHHHHHHTTSCGGGCE
T ss_pred CCCeEEEcCCCCH-----HHHHHHHHHhCCcCcE
Confidence 4679999999753 3344455555555443
No 432
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=28.29 E-value=74 Score=20.40 Aligned_cols=42 Identities=19% Similarity=0.051 Sum_probs=31.3
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
..+.++|.+..|..+...++ +++.|+..|+++.++.-.+..+
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~-~~~~ak~~g~~vI~IT~~~~s~ 156 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILA-AFREAKAKGMTCVGFTGNRGGE 156 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEECSCCCT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCeEEEEECCCCCc
Confidence 35689999999998887664 5566888899888887544443
No 433
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=28.28 E-value=1.4e+02 Score=20.24 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++.. ..+++.....++|-||+....... . ... ..+...++||+++-.
T Consensus 36 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~-----~~~-~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 36 TRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-H-----PFY-QRWANDPFPIVALDR 108 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-C-----HHH-HTTTTSSSCEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-H-----HHH-HHHHhCCCCEEEECC
Confidence 4666777777888887766543334443 345666667789998886432211 0 011 223456789888854
No 434
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=28.28 E-value=1.2e+02 Score=19.54 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcC-CccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHA-PCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~-~~pVliv~~~ 159 (164)
...+.+...+...|..+. ...+ .++.++......+|++++ ++..++ .....+-... .+||+++-..
T Consensus 11 ~~~~~l~~~L~~~g~~v~---~~~~-~~~al~~l~~~~~dlvil--p~~~g~------~~~~~lr~~~~~~~ii~lt~~ 77 (223)
T 2hqr_A 11 VLGGEIEKGLNVKGFMAD---VTES-LEDGEYLMDIRNYDLVMV--SDKNAL------SFVSRIKEKHSSIVVLVSSDN 77 (223)
T ss_dssp HHHHHHHHHHGGGTCCEE---EESS-HHHHHHHHTTSCCSEEEE--CCTTHH------HHHHHHHHHCTTSEEEEEESS
T ss_pred HHHHHHHHHHHHCCcEEE---EECC-HHHHHHHHhcCCCCEEEe--CCCCHH------HHHHHHHhCCCCCcEEEEECC
Confidence 444555555655565443 2233 445556677788999992 222222 1234443334 6899888543
No 435
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=28.27 E-value=1.2e+02 Score=19.53 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHH----HHHhhCCCCEEEEe
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLL----EAIEDLKLDSLVMG 126 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~----~~a~~~~~dlivlg 126 (164)
.-..+...+++.|.++.......|-.+.|. +.+.+.++|+||+.
T Consensus 41 n~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 334466677777887765544444333333 33333359998874
No 436
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=28.20 E-value=49 Score=25.03 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=16.0
Q ss_pred CChhHHHHHHHhhC-----CCCEEEEeccCCc
Q 031195 105 GDARERLLEAIEDL-----KLDSLVMGSRGLG 131 (164)
Q Consensus 105 g~~~~~I~~~a~~~-----~~dlivlg~~~~~ 131 (164)
|+-.+.+.+.+++. ++.++.+.+.+..
T Consensus 112 GdDi~~v~~~~~~~~~~~~~~pvi~v~tpgf~ 143 (458)
T 1mio_B 112 GDDLPTYISQMEDAGSIPEGKLVIHTNTPSYV 143 (458)
T ss_dssp TCCHHHHHHHHHHTTCSCTTCEEEEECCCTTS
T ss_pred hcCHHHHHHHHHHhcCCCCCCeEEEEECCCCc
Confidence 65556666665553 5666666665544
No 437
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=28.15 E-value=1.5e+02 Score=20.54 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCceEEEEecC--------C-hhHHHHHHHh---hCCCCEEEEe-ccCCcc
Q 031195 86 LLDTASRQKEANIVAKIYWG--------D-ARERLLEAIE---DLKLDSLVMG-SRGLGT 132 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g--------~-~~~~I~~~a~---~~~~dlivlg-~~~~~~ 132 (164)
.+.+.++..|+++......+ . ..+.+.+.++ ..++|.||+| +..-..
T Consensus 162 ~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l~~ 221 (273)
T 2xed_A 162 KVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQMPS 221 (273)
T ss_dssp HHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSSCC
T ss_pred HHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCcch
Confidence 55566666677654332222 1 1233444443 4579999999 887664
No 438
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=28.10 E-value=1.2e+02 Score=19.35 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhh-cCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 81 IDALDLLDTASRQ-KEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 81 ~~~l~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+...+.+.+.+.. .|++++..-..... .+...+ +|.||+|++...
T Consensus 19 ~~~a~~i~~~l~~~~g~~v~~~~l~~~~----~~~l~~--aD~ii~gsP~y~ 64 (188)
T 2ark_A 19 KKMAELVAEGARSLEGTEVRLKHVDEAT----KEDVLW--ADGLAVGSPTNM 64 (188)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTCC----HHHHHH--CSEEEEEEECBT
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEhhhCC----HHHHHh--CCEEEEEeCccC
Confidence 3455556666665 56665554333322 223344 899999987653
No 439
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=27.99 E-value=1.8e+02 Score=21.45 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=51.2
Q ss_pred eEEEEeCCCccHHHHHHHHHHhcCCCCC---------e-----EEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhh
Q 031195 6 KIGVALDFSPSSKFALSWAVNNLLDKGD---------T-----LYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPET 71 (164)
Q Consensus 6 ~iLv~vd~s~~~~~al~~a~~la~~~~~---------~-----l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (164)
+|-|++.--..+....+-+.++.+.++. . =.++|+.-+.++..
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~s----------------------- 70 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTS----------------------- 70 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGG-----------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchH-----------------------
Confidence 5667776655666666666666655433 0 24777644433221
Q ss_pred hHhhcccchHHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEecc
Q 031195 72 MEKYNVKTDIDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
......+.+.+.+...+..+-.......-....++.+++.++|.|+++..
T Consensus 71 -------e~~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 71 -------NIDSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp -------GHHHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred -------HHHHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 00234566667776665433322111222356678888888998887654
No 440
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=27.93 E-value=1.2e+02 Score=19.26 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=25.5
Q ss_pred cCCceEEEEecCC-hhHHHHHHHhhCCCCEEEEecc
Q 031195 94 KEANIVAKIYWGD-ARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 94 ~~~~~~~~~~~g~-~~~~I~~~a~~~~~dlivlg~~ 128 (164)
.|++++....-.. ....|.+..++.++|+||--..
T Consensus 56 ~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 56 TGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCC
Confidence 5788876432111 3457999999999999998766
No 441
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=27.87 E-value=68 Score=21.21 Aligned_cols=42 Identities=10% Similarity=-0.025 Sum_probs=27.5
Q ss_pred CCceEEEEeCCCc-----cHHHHHHHHHHhcCCC--CCeEEEEEEecCC
Q 031195 3 GDRKIGVALDFSP-----SSKFALSWAVNNLLDK--GDTLYIIHINPNS 44 (164)
Q Consensus 3 ~~~~iLv~vd~s~-----~~~~al~~a~~la~~~--~~~l~ll~v~~~~ 44 (164)
+|.|||+-..... .+..+++.+++.++.. +.++.++.+.+..
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~ 51 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEE 51 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSC
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 3467777654433 2567777777776654 7899988886654
No 442
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=27.86 E-value=1.2e+02 Score=19.09 Aligned_cols=67 Identities=6% Similarity=0.024 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCCceEEEEe-----------cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCC
Q 031195 82 DALDLLDTASRQKEANIVAKIY-----------WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAP 150 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~-----------~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~ 150 (164)
+.++++.+.+.+..+.+++.-. .|.+...|+++|++.++ .++... -....+....+
T Consensus 58 e~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a--~lvTnD-----------~~l~kvA~~~G 124 (142)
T 3i8o_A 58 EELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNS--ILLTSD-----------WIQYNLAKAQG 124 (142)
T ss_dssp HHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTC--EEEESC-----------HHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCC--EEEcCC-----------HHHHHHHHHcC
Confidence 4444555555556677775421 14678889999999665 333311 13467888889
Q ss_pred ccEEEEeCCCC
Q 031195 151 CPVTIVKDPSF 161 (164)
Q Consensus 151 ~pVliv~~~~~ 161 (164)
+||+.+++...
T Consensus 125 I~V~~l~~~~~ 135 (142)
T 3i8o_A 125 IEAYFLEAAEE 135 (142)
T ss_dssp CCEEECCCCCC
T ss_pred CEEEEeccccc
Confidence 99999988665
No 443
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=27.83 E-value=78 Score=21.60 Aligned_cols=78 Identities=5% Similarity=-0.112 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEEecCCCchhhhhhccCCCCCCCCcccCcchhhhHhhcccchHHHHHHHHHHhhhcCCc
Q 031195 18 KFALSWAVNNLLDKGDTLYIIHINPNSLDESRNLMWAKSGSPLIPLTEFREPETMEKYNVKTDIDALDLLDTASRQKEAN 97 (164)
Q Consensus 18 ~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (164)
...++.++++|...|++...++.-.... . ...++ ..+...+.++.+.+.+++.|+.
T Consensus 83 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~------------------~-~~~~~-----~~~~~~~~l~~l~~~a~~~Gv~ 138 (286)
T 3dx5_A 83 IEKCEQLAILANWFKTNKIRTFAGQKGS------------------A-DFSQQ-----ERQEYVNRIRMICELFAQHNMY 138 (286)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSCSSCG------------------G-GSCHH-----HHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCc------------------c-cCcHH-----HHHHHHHHHHHHHHHHHHhCCE
Confidence 4566777788888888777665321110 0 00001 1233356677777777888887
Q ss_pred eEEEEecC---ChhHHHHHHHhhCC
Q 031195 98 IVAKIYWG---DARERLLEAIEDLK 119 (164)
Q Consensus 98 ~~~~~~~g---~~~~~I~~~a~~~~ 119 (164)
+-.+...+ ...+.+.+.++..+
T Consensus 139 l~lE~~~~~~~~~~~~~~~l~~~~~ 163 (286)
T 3dx5_A 139 VLLETHPNTLTDTLPSTLELLGEVD 163 (286)
T ss_dssp EEEECCTTSTTSSHHHHHHHHHHHC
T ss_pred EEEecCCCcCcCCHHHHHHHHHhcC
Confidence 76665443 23455566666543
No 444
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=27.81 E-value=1.1e+02 Score=22.14 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=27.5
Q ss_pred CceEEEEeCCCccHHHHHHHHHHh---cCCCCCeEEEEEE
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNN---LLDKGDTLYIIHI 40 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~l---a~~~~~~l~ll~v 40 (164)
.++|+++.|+......|...+++. ....+..+.++..
T Consensus 206 ~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~l 245 (338)
T 1dd9_A 206 TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFL 245 (338)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEE
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 368999999999988888888886 3334556665543
No 445
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=27.71 E-value=41 Score=27.65 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=31.2
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKD 158 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~ 158 (164)
.+.+.++++.+++++|++|....+.....+ ...+++. .++|++++.+
T Consensus 372 ~~~l~~li~~~~~~~IaIGngtasret~~~----v~~l~~~~~~~~i~~v~v~e 421 (785)
T 3bzc_A 372 LAVLAALCAKHQVELIAIGNGTASRETDKL----AGELIKKYPGMKLTKIMVSE 421 (785)
T ss_dssp HHHHHHHHHHHTCCEEEEESSTTHHHHHHH----HHHHHHHCGGGCCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEECCCccCHHHHHH----HHHHHHhcccCCCCEEEEcC
Confidence 357889999999999999975444333333 2334433 3588888765
No 446
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=27.71 E-value=1.2e+02 Score=19.27 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHhhCCCCEEEEeccCCc
Q 031195 109 ERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+.+.+...+ +|.||+|++-..
T Consensus 76 ~~~~~~l~~--aD~iI~~sP~y~ 96 (191)
T 1t0i_A 76 RSWSRIVNA--LDIIVFVTPQYN 96 (191)
T ss_dssp HHHHHHHHT--CSEEEEEEECBT
T ss_pred HHHHHHHHh--CCEEEEEeceEC
Confidence 355556666 999999987554
No 447
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=27.59 E-value=1.7e+02 Score=20.87 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhcCCceEE-------EEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 82 DALDLLDTASRQKEANIVA-------KIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~-------~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
+.+--|.-...+.|..+-. .+..|...+...+....+ +|.||+-....+ ..+.+.+++++||+
T Consensus 51 RTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~-~D~iviR~~~~~---------~~~~la~~~~vPVI 120 (299)
T 1pg5_A 51 RTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNY-SDGIVMRHKYDG---------ASRFASEISDIPVI 120 (299)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHH-CSEEEEEESSBT---------HHHHHHHHCSSCEE
T ss_pred chHHhHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHh-CCEEEEeCCChh---------HHHHHHHhCCCCEE
Confidence 3334444445555543322 233354444444554455 899999755433 35667788899986
Q ss_pred E
Q 031195 155 I 155 (164)
Q Consensus 155 i 155 (164)
=
T Consensus 121 N 121 (299)
T 1pg5_A 121 N 121 (299)
T ss_dssp E
T ss_pred e
Confidence 3
No 448
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=27.52 E-value=99 Score=20.03 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
-..+.+...+++.|+++++... +...+++..+..++|+++.+.
T Consensus 29 ~~~dl~~~i~~~~g~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 71 (237)
T 3kzg_A 29 FDIDLMQEICRRLHATCTFEAY---IFDDLFPALKNREVDLVIASM 71 (237)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE---CGGGHHHHHHTTSSSEECSSC
T ss_pred ehHHHHHHHHHHhCCceEEEEc---CHHHHHHHHhCCCCCEEEEcc
Confidence 3445555666667888887654 457788888899999877543
No 449
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=27.45 E-value=45 Score=22.94 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=22.7
Q ss_pred eEEEEecCChhHHHHHHHhhCCCCEEEEec
Q 031195 98 IVAKIYWGDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 98 ~~~~~~~g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
++..+..=++..++++.|.+.++|+||.-.
T Consensus 35 V~~I~~~lD~t~~vi~eAi~~~adlIitHH 64 (247)
T 1nmo_A 35 VQKIVTGVTASQALLDEAVRLGADAVIVHH 64 (247)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCSEEEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHhCCCCEEEECC
Confidence 333333348899999999999999998853
No 450
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=27.36 E-value=1.2e+02 Score=19.27 Aligned_cols=74 Identities=7% Similarity=0.022 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHHhhhcCCceEEEEe--cCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 77 VKTDIDALDLLDTASRQKEANIVAKIY--WGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
........+.+.+.+.+.|++++..-- +|...+.|-+.. .++|-||+..-..+..+- -....+...+.|++
T Consensus 31 ~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~--~~~dgiiINpgA~THtSv-----AlrDAl~~~~~P~V 103 (153)
T 3lwz_A 31 YTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR--GNTDFILINPAAFTHTSV-----ALRDALLGVQIPFI 103 (153)
T ss_dssp CCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT--TTCSEEEEECGGGGGTCH-----HHHHHHHHHTCCEE
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh--hcCceEEEccccceechH-----HHHHHHHhcCCCEE
Confidence 444567777788888887776664221 144455554432 459999997443321111 12234555678887
Q ss_pred EEe
Q 031195 155 IVK 157 (164)
Q Consensus 155 iv~ 157 (164)
=|+
T Consensus 104 EVH 106 (153)
T 3lwz_A 104 EIH 106 (153)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 451
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=27.30 E-value=1.7e+02 Score=20.77 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
++-++.+.+.+++.|+.+-+.+..-.- ++++.+. +|++-+|+..-.... ...++. +.++||++=+.
T Consensus 77 ~~GL~~L~~~~~e~Glp~~Tev~d~~~----v~~l~~~-vd~lqIgA~~~~n~~------LLr~va-~~gkPVilK~G 142 (285)
T 3sz8_A 77 DEGLKIFAEVKARFGVPVITDVHEAEQ----AAPVAEI-ADVLQVPAFLARQTD------LVVAIA-KAGKPVNVKKP 142 (285)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCSGGG----HHHHHTT-CSEEEECGGGTTCHH------HHHHHH-HTSSCEEEECC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHH----HHHHHHh-CCEEEECccccCCHH------HHHHHH-ccCCcEEEeCC
Confidence 456667888888899998887654332 2344555 899999875433222 223322 45677776554
No 452
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=27.18 E-value=97 Score=20.72 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=29.1
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCc-ccchhcccchhHHHhhcCCccEEEE
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLG-TVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~-~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
..+..+.+.+.++|.|++...... ..... .-....++.+..++||+..
T Consensus 151 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~ipvia~ 199 (244)
T 2y88_A 151 LWDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTDAPVIAS 199 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCCCCEEEE
Confidence 355666677788998876554332 21221 2234566777778998864
No 453
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=27.17 E-value=1.2e+02 Score=19.22 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
...+.+...+...|..+. ..+..++.++......+|++++...-.+ ..++ .....+-.. ..+||+++-..
T Consensus 15 ~~~~~l~~~L~~~g~~v~----~~~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 15 SVREGLRNLLRSAGFEVE----TFDCASTFLEHRRPEQHGCLVLDMRMPG-MSGI---ELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HHHHHHHHHHHTTTCEEE----EESSHHHHHHHCCTTSCEEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHHhCCceEE----EcCCHHHHHHhhhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 444555555555555433 2233455566777788999999854322 1111 133444433 35899988643
No 454
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=27.13 E-value=75 Score=22.16 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=32.2
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+++....+..++.|+|+...-. ..+-. ...-.+....++|..+|+..
T Consensus 132 vneVTklVE~kKAqLVVIA~DVd-PiElV---~fLPaLC~k~gVPY~iVk~K 179 (258)
T 3iz5_H 132 LNHVTYLIEQSKAQLVVIAHDVD-PIELV---VWLPALCRKMEVPYCIVKGK 179 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEESCCS-STHHH---HHHHHHHTTTTCCEEEESCH
T ss_pred cHHHHHHHHcCcceEEEEeCCCC-hHHHH---hHHHHHHHhcCCCeEEECCH
Confidence 67888889999999999975432 22211 12355667777888887753
No 455
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=27.11 E-value=1.5e+02 Score=20.09 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhc-CCceEEEEec---CChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEE
Q 031195 81 IDALDLLDTASRQK-EANIVAKIYW---GDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 81 ~~~l~~~~~~~~~~-~~~~~~~~~~---g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
....+.+.+.+.+. |..+...... ++.. ...++.+...++|-||+.......... . -.-+...++||+
T Consensus 25 ~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~-----~-~~~~~~~~iPvV 98 (304)
T 3gbv_A 25 TDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKG-----F-TDALNELGIPYI 98 (304)
T ss_dssp HHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHH-----H-HHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHH-----H-HHHHHHCCCeEE
Confidence 46677777878776 6666654432 2443 345666777899999997543221111 1 223455689999
Q ss_pred EEeCC
Q 031195 155 IVKDP 159 (164)
Q Consensus 155 iv~~~ 159 (164)
++-..
T Consensus 99 ~~~~~ 103 (304)
T 3gbv_A 99 YIDSQ 103 (304)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 88643
No 456
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=27.09 E-value=1.9e+02 Score=21.23 Aligned_cols=65 Identities=9% Similarity=0.009 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCceEE------EEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 82 DALDLLDTASRQKEANIVA------KIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~------~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
+.+--|+-...+.|..+-. .+..|...+.-.+....+ +|.||+-....+ ..+.+.+++++||+=
T Consensus 79 RTR~SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~-~D~IviR~~~~~---------~~~~lA~~s~vPVIN 148 (353)
T 3sds_A 79 RTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSM-VSCIVARVGPHS---------DIANLAKHSSVPVIN 148 (353)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTS-CSEEEEECSSHH---------HHHHHHHHCSSCEEE
T ss_pred hHHHHHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHh-cCEEEEEeCChH---------HHHHHHhhCCCCEEE
Confidence 3334455555555554432 233354444444555555 899998644332 356777889999874
Q ss_pred E
Q 031195 156 V 156 (164)
Q Consensus 156 v 156 (164)
.
T Consensus 149 a 149 (353)
T 3sds_A 149 A 149 (353)
T ss_dssp E
T ss_pred C
Confidence 4
No 457
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=26.84 E-value=1e+02 Score=19.41 Aligned_cols=41 Identities=20% Similarity=0.079 Sum_probs=31.0
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
.+.++|.+..+..+...++ +++.|+..|+++.++.-.+..+
T Consensus 96 ~~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~s~ 136 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITA-LIPVLKRLHVPLICITGRPESS 136 (183)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHTTTCCEEEEESCTTSH
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEEECCCCCh
Confidence 5679999999998887654 4556888899988887554443
No 458
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.83 E-value=1.7e+02 Score=20.56 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEE
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+....... ..-..+...+.||+++
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--------HHHHHHHhCCCCEEEE
Confidence 467778888888888877654433444 3345666677889999986432211 1233456778999988
No 459
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=26.65 E-value=97 Score=19.64 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=31.7
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
..+.++|.+..+..+...++ +++.|+..|+++.++.-.+..+
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~~~~s~ 127 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVA-ALAGAAERGVPTMALTDSSVSP 127 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHH-HHHHHHHTTCCEEEEESCTTSH
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEEeCCCCCc
Confidence 35789999999998887555 4556888899988888655444
No 460
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=26.61 E-value=1.3e+02 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=15.1
Q ss_pred HHHHHHHhhCCCCEEEEeccCCc
Q 031195 109 ERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
+.+.+...+ +|.||++++-..
T Consensus 78 ~~~~~~l~~--aD~iv~~~P~y~ 98 (201)
T 1t5b_A 78 DELIAELKA--HDVIVIAAPMYN 98 (201)
T ss_dssp HHHHHHHHH--CSEEEEECCCBT
T ss_pred HHHHHHHHh--CCEEEEEeCccc
Confidence 345556666 999999987554
No 461
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=26.55 E-value=1.8e+02 Score=21.00 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg 126 (164)
.+.+.+++.|+.++.+..+....+.|.+.....+++-|--|
T Consensus 184 ~~~~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~rIgHg 224 (343)
T 3rys_A 184 RLYQRAAEAGLRRIAHAGEEGPASYITEALDVLHVERIDHG 224 (343)
T ss_dssp HHHHHHHHTTCEEEEEESSSSCHHHHHHHHHTSCCSEEEEC
T ss_pred HHHHHHHHCCCeEEEeeCCCCCHHHHHHHHhcCCcceeeee
Confidence 34456677789999999886566777777777788875544
No 462
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=26.54 E-value=1.1e+02 Score=20.90 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=7.8
Q ss_pred HHHHHHHhhCCCCEEEEe
Q 031195 109 ERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg 126 (164)
+.+.+.++..+.-+++.|
T Consensus 64 ~~i~~i~~~~~iPvi~~g 81 (266)
T 2w6r_A 64 EMIRFVRPLTTLPIIASG 81 (266)
T ss_dssp HHHHHHGGGCCSCEEEES
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 334444444444444443
No 463
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=26.52 E-value=1.6e+02 Score=24.17 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=21.6
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+.+.|++.+.+.++|+|++.+....
T Consensus 642 v~~eeiv~aA~e~~adiVglSsl~~~ 667 (762)
T 2xij_A 642 QTPREVAQQAVDADVHAVGVSTLAAG 667 (762)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCEEEEeeecHH
Confidence 46799999999999999999865443
No 464
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=26.50 E-value=1.7e+02 Score=20.61 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=20.8
Q ss_pred CCCCceEEEEeCC-CccHHHHHHHHHHhcCC-CCCeEEEEEEec
Q 031195 1 MAGDRKIGVALDF-SPSSKFALSWAVNNLLD-KGDTLYIIHINP 42 (164)
Q Consensus 1 m~~~~~iLv~vd~-s~~~~~al~~a~~la~~-~~~~l~ll~v~~ 42 (164)
||++.|||+..+. .+..--+-.+...+++. .+-.++++....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~g~~v~v~~~~~ 44 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQDPESIVVFASTQ 44 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTSCGGGEEEEEECS
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHhcCCeEEEEECCC
Confidence 7878889998863 22222233344444444 355777766533
No 465
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=26.46 E-value=42 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=29.0
Q ss_pred ceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEE
Q 031195 5 RKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIH 39 (164)
Q Consensus 5 ~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~ 39 (164)
++|+++.|+......|...++......+..+.++.
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~ 230 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQ 230 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 68999999999999998888888777777766654
No 466
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=26.45 E-value=91 Score=17.45 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...+.+...+...|..+. ...+..+++ ......++|++++...-.+ ..++ .....+-....+|++++-..
T Consensus 12 ~~~~~l~~~l~~~~~~v~---~~~~~~~~~-~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (121)
T 1zh2_A 12 AIRRFLRTALEGDGMRVF---EAETLQRGL-LEAATRKPDLIILDLGLPD-GDGI---EFIRDLRQWSAVPVIVLSAR 81 (121)
T ss_dssp HHHHHHHHHHHTTTCEEE---EESSHHHHH-HHHHHHCCSEEEEESEETT-EEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEE---EeCCHHHHH-HHHhcCCCCEEEEeCCCCC-CcHH---HHHHHHHhCCCCcEEEEECC
Confidence 334445555555554332 223444444 4445567999999754322 1111 13444444445888887543
No 467
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=26.39 E-value=1.8e+02 Score=20.92 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEec---CC-hhHHHHHHHhhCCCCEEEEecc
Q 031195 82 DALDLLDTASRQKEANIVAKIYW---GD-ARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~---g~-~~~~I~~~a~~~~~dlivlg~~ 128 (164)
..++.+.+.+...|+.+...... ++ -...++..++..++|.||+...
T Consensus 144 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~ 194 (389)
T 3o21_A 144 SVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCE 194 (389)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESC
T ss_pred HHHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECC
Confidence 34455556666666666554332 22 2456666677777888877654
No 468
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=26.25 E-value=1.8e+02 Score=20.65 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=36.5
Q ss_pred ceEEEEecC--ChhHHH--HHHHhhCCCCEEEEeccCCcc--cc-hhcccchhHHHhhcCCccEEEEeCC
Q 031195 97 NIVAKIYWG--DARERL--LEAIEDLKLDSLVMGSRGLGT--VR-RIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 97 ~~~~~~~~g--~~~~~I--~~~a~~~~~dlivlg~~~~~~--~~-~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
++-..+-.| +..++| .+.+++.++|-+.+-.+.... .. .-+. ..-..|...++.||+++..+
T Consensus 83 r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~-~~f~~ia~a~~lPiilYn~P 151 (307)
T 3s5o_A 83 NRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALI-HHYTKVADLSPIPVVLYSVP 151 (307)
T ss_dssp TSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHH-HHHHHHHHHCSSCEEEEECH
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHH-HHHHHHHhhcCCCEEEEeCC
Confidence 344334344 444433 456888999999987654321 11 1111 13356778889999998754
No 469
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=26.07 E-value=1.8e+02 Score=20.78 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhcCCceEEE------EecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEE
Q 031195 82 DALDLLDTASRQKEANIVAK------IYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTI 155 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~------~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVli 155 (164)
+.+--|.-...+.|..+-.. +..|...+.-.+....+ +|.||+-.... ...+.+.+++++||+=
T Consensus 49 RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVIN 118 (307)
T 3tpf_A 49 RTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAM-VDFVMMRVNKH---------ETLLEFARYSKAPVIN 118 (307)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHH-SSEEEEECSCH---------HHHHHHHHHCSSCEEE
T ss_pred chHHhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHHhCCCCEEe
Confidence 33344555555555544432 12243333334444444 89999965432 2456677888999874
Q ss_pred E
Q 031195 156 V 156 (164)
Q Consensus 156 v 156 (164)
.
T Consensus 119 a 119 (307)
T 3tpf_A 119 A 119 (307)
T ss_dssp E
T ss_pred C
Confidence 3
No 470
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=26.05 E-value=1.8e+02 Score=20.81 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 86 LLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+.+.+++.|+.++.+..+....+.|.+.....+++-|--|.+-.. ..-.-..+...+++|-++|
T Consensus 181 ~~~~~A~~~gl~~~~HagE~~~~~~i~~al~~lg~~rigHgv~l~~-------d~~l~~~l~~~~i~le~cP 245 (326)
T 3pao_A 181 RVFDRARSEGFLTVAHAGEEGPPEYIWEALDLLKVERIDHGVRAFE-------DERLMRRLIDEQIPLTVCP 245 (326)
T ss_dssp HHHHHHHHTTCEECEEESSSSCHHHHHHHHHTTCCSSEEECGGGGG-------CHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHcCCceeeecCCCCCHHHHHHHHhcCCCceeeeeeeecc-------cHHHHHHHHHcCCeEEECc
Confidence 3445566778999999988655677777777677776543322110 1112345555667766665
No 471
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=26.02 E-value=1.2e+02 Score=20.30 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhcCCceEEEEec-----CChhHHHHHHHhhCCCCEEEEeccCCc-c------------cc---hhcccch
Q 031195 83 ALDLLDTASRQKEANIVAKIYW-----GDARERLLEAIEDLKLDSLVMGSRGLG-T------------VR---RIILGSV 141 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~-----g~~~~~I~~~a~~~~~dlivlg~~~~~-~------------~~---~~~~~s~ 141 (164)
..+.+.+.++..|.+++....+ ....+.+.+.....++|.|+..+...- . +. -.-.|..
T Consensus 131 ~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~~l~~~~~~aiG~~ 210 (240)
T 3mw8_A 131 GREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSAR 210 (240)
T ss_dssp SCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSHH
T ss_pred cHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHcchHHHHHHhCCCEEEECHH
Confidence 3455667777778877765544 123455666666667999998765411 0 01 1235777
Q ss_pred hHHHhhcCCccEEEEeCCC
Q 031195 142 SNYVMTHAPCPVTIVKDPS 160 (164)
Q Consensus 142 ~~~i~~~~~~pVliv~~~~ 160 (164)
+...++..+..+.++++.+
T Consensus 211 ta~~l~~~G~~~~~va~~p 229 (240)
T 3mw8_A 211 VETQARKKGLRRVTNAGAA 229 (240)
T ss_dssp HHHHHHHTTCCCEEECSSS
T ss_pred HHHHHHHcCCCceEeCCCC
Confidence 7777887776666666543
No 472
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.89 E-value=1.5e+02 Score=19.82 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCCceEEEEec-CChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeCC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYW-GDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
...++.+.+.+.+.|..+...... ......+++.....++|-||++.... . ..+-. .+.||+++-..
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~---~--------~~~~~-~~iPvV~~~~~ 88 (280)
T 3gyb_A 21 IDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDIP---D--------FTVPD-SLPPFVIAGTR 88 (280)
T ss_dssp HHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESCC--------------------CCCEEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEEecCCCC---h--------hhHhh-cCCCEEEECCC
Confidence 577788888888888777654433 12344567777788999999433211 1 11111 77899888543
No 473
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=25.87 E-value=1.8e+02 Score=20.81 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEec-------CChhHHHHHHHhhCCCCEEEEecc
Q 031195 82 DALDLLDTASRQKEANIVAKIYW-------GDARERLLEAIEDLKLDSLVMGSR 128 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~-------g~~~~~I~~~a~~~~~dlivlg~~ 128 (164)
..++.+.+.+.+.|+++...... ..-...++..++..++|.|++...
T Consensus 135 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 188 (376)
T 3hsy_A 135 STLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCE 188 (376)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESC
T ss_pred HHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECC
Confidence 34444555555555555433221 011234444455556676666543
No 474
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=25.86 E-value=1.7e+02 Score=20.40 Aligned_cols=63 Identities=8% Similarity=-0.073 Sum_probs=34.9
Q ss_pred CCceEEEEecCChhHHH--HHHHhhCCCCEEEEeccCCccc-chhcccchhHHHhhcCCccEEEEeCC
Q 031195 95 EANIVAKIYWGDARERL--LEAIEDLKLDSLVMGSRGLGTV-RRIILGSVSNYVMTHAPCPVTIVKDP 159 (164)
Q Consensus 95 ~~~~~~~~~~g~~~~~I--~~~a~~~~~dlivlg~~~~~~~-~~~~~~s~~~~i~~~~~~pVliv~~~ 159 (164)
.+.+-.-+...+..++| .+.+++.++|-+.+..+..... ..--+-..-..|.. +.||+++..+
T Consensus 62 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~--~lPiilYn~P 127 (283)
T 2pcq_A 62 RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAE--KMPLFLYHVP 127 (283)
T ss_dssp SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH--HSCEEEEECH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc--CCCEEEEeCc
Confidence 44444434333454444 5568889999998876654322 11111112234555 7999998643
No 475
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=25.84 E-value=1.5e+02 Score=19.79 Aligned_cols=48 Identities=10% Similarity=-0.006 Sum_probs=27.4
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCcc-cchhcccchhHHHhhcCCccEEEE
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLGT-VRRIILGSVSNYVMTHAPCPVTIV 156 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~~-~~~~~~~s~~~~i~~~~~~pVliv 156 (164)
..+..+.+.+.++|.|++....+.+ ... +.-....++....++||+..
T Consensus 148 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g-~~~~~~~~i~~~~~ipvia~ 196 (244)
T 1vzw_A 148 LYETLDRLNKEGCARYVVTDIAKDGTLQG-PNLELLKNVCAATDRPVVAS 196 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEEC-------C-CCHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeccCcccccCC-CCHHHHHHHHHhcCCCEEEE
Confidence 3455666777889977765433222 111 12235667777778998875
No 476
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=25.82 E-value=22 Score=21.07 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRG 129 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~ 129 (164)
..++.+.+.+.+. ..+......|+.+.. ++-...++|++|+....
T Consensus 12 ~~~~~i~~~l~~~-~~v~~v~LFGS~ArG--~~~~~SDIDl~V~~~~~ 56 (114)
T 1no5_A 12 EELAIVKTILQQL-VPDYTVWAFGSRVKG--KAKKYSDLDLAIISEEP 56 (114)
T ss_dssp HHHHHHHHHHHHH-CTTSEEEEEGGGTTT--CCCTTCCEEEEEECSSC
T ss_pred HHHHHHHHHHHHh-CCCCEEEEEeccCCC--CCCCCCCeEEEEEeCCC
Confidence 3445555555543 123355677877654 33445789999988654
No 477
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=25.81 E-value=1.6e+02 Score=19.99 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhcCCceEEEEecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEeC
Q 031195 81 IDALDLLDTASRQKEANIVAKIYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVKD 158 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~~ 158 (164)
...++.+.+.+.+.|..+......++. ....++.....++|-||+...... . ...+. +...+.||+++-.
T Consensus 32 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~~-l~~~~iPvV~~~~ 103 (289)
T 2fep_A 32 SELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT--D-----EHVAE-FKRSPVPIVLAAS 103 (289)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC--H-----HHHHH-HHHSSSCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC--H-----HHHHH-HHhcCCCEEEEcc
Confidence 466677777777888776654333444 234566666778999888643211 1 12233 3456789888854
No 478
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=25.73 E-value=40 Score=23.16 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.0
Q ss_pred CChhHHHHHHHhhCCCCEEEEec
Q 031195 105 GDARERLLEAIEDLKLDSLVMGS 127 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~ 127 (164)
=++..++++.|.+.++|+||.-.
T Consensus 43 lD~t~~vi~eAi~~~adlIitHH 65 (242)
T 2yyb_A 43 VDAGEAIFRKALEEEVDFLIVHH 65 (242)
T ss_dssp EECSHHHHHHHHHTTCSEEEEEE
T ss_pred EcCCHHHHHHHHHCCCCEEEECC
Confidence 37899999999999999998853
No 479
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.68 E-value=1.5e+02 Score=19.67 Aligned_cols=70 Identities=10% Similarity=0.200 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
...+.+...+...|..+. ...+. ++.++.+....+|++++...-.+ ..++ .....+-.. ..+||+++-..
T Consensus 34 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvllD~~lp~-~~g~---~~~~~lr~~~~~~~ii~lt~~ 104 (250)
T 3r0j_A 34 NIVELLSVSLKFQGFEVY---TATNG-AQALDRARETRPDAVILDVXMPG-MDGF---GVLRRLRADGIDAPALFLTAR 104 (250)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEECS
T ss_pred HHHHHHHHHHHHCCCEEE---EECCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEECC
Confidence 444555566665565432 22333 44556666678999999854221 1111 133444443 35899888643
No 480
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=25.58 E-value=2.4e+02 Score=22.00 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=25.4
Q ss_pred CceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecC
Q 031195 4 DRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPN 43 (164)
Q Consensus 4 ~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~ 43 (164)
.+++++++.+.-.|.-++..+.+ ..+.+++.+|+...
T Consensus 255 ~~~vvvalSGGvDSsv~a~ll~~---~~G~~v~~v~vd~g 291 (556)
T 3uow_A 255 DHYVIAAMSGGIDSTVAAAYTHK---IFKERFFGIFIDNG 291 (556)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHH---HHGGGEEEEEEECS
T ss_pred CceEEEEcccCCCHHHHHHHHHH---HhCCeEEEEEEecC
Confidence 46899999887766644444432 24678999998654
No 481
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.57 E-value=1e+02 Score=17.70 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc---CCccEEEEeCC
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH---APCPVTIVKDP 159 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~---~~~pVliv~~~ 159 (164)
..+.+...+. .+..+. .....++.++...+.++|+|++...-.. ..++ .....+-+. ..+||+++-..
T Consensus 16 ~~~~l~~~l~-~~~~v~----~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 16 MRETLRLLLS-GEFDCT----TAADGASGLQQALAHPPDVLISDVNMDG-MDGY---ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHT-TTSEEE----EESSHHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHHHh-CCcEEE----EECCHHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCccCCCCEEEEeCC
Confidence 3344444444 443322 2333445566777788999999865322 1111 123444442 35899888654
No 482
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=25.57 E-value=78 Score=21.06 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcCC--ceEEEEecCChhH--------------HHHHHH-------hhCCCCEEEEecc
Q 031195 81 IDALDLLDTASRQKEA--NIVAKIYWGDARE--------------RLLEAI-------EDLKLDSLVMGSR 128 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~--~~~~~~~~g~~~~--------------~I~~~a-------~~~~~dlivlg~~ 128 (164)
.+..+.+++.+.+.|+ .-...+..|+..+ .+-+++ ....+|+|++...
T Consensus 61 ~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 61 RAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp HHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 4666667777777776 4344455565332 233443 2256999999764
No 483
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=25.44 E-value=1e+02 Score=17.78 Aligned_cols=70 Identities=10% Similarity=-0.032 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
...+.+...+...|..+. ...+. ++.++......+|++++...-.+ ..++ .....+-.. ..+|++++-..
T Consensus 14 ~~~~~l~~~L~~~g~~v~---~~~~~-~~al~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 14 AILDSTKQILEFEGYEVE---IAATA-GEGLAKIENEFFNLALFXIKLPD-MEGT---ELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESSH-HHHHHHHHHSCCSEEEECSBCSS-SBHH---HHHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHHHHHHCCceEE---EeCCH-HHHHHHHhcCCCCEEEEecCCCC-CchH---HHHHHHHhhCCCCcEEEEecc
Confidence 334445555555555432 22333 44556666778999999854322 1111 123444332 35888887543
No 484
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=25.43 E-value=1.3e+02 Score=21.06 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=14.2
Q ss_pred hHHHHHHHhhCCCCEEEEeccCCc
Q 031195 108 RERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 108 ~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
.+.+.+..++.++|++|+-++..+
T Consensus 58 ~~~~~~~l~~~~~d~lIvD~Y~~~ 81 (282)
T 3hbm_A 58 IYELINLIKEEKFELLIIDHYGIS 81 (282)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTCC
T ss_pred HHHHHHHHHhCCCCEEEEECCCCC
Confidence 344555555566777777666543
No 485
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=25.27 E-value=96 Score=19.65 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=31.6
Q ss_pred CCceEEEEeCCCccHHHHHHHHHHhcCCCCCeEEEEEEecCCC
Q 031195 3 GDRKIGVALDFSPSSKFALSWAVNNLLDKGDTLYIIHINPNSL 45 (164)
Q Consensus 3 ~~~~iLv~vd~s~~~~~al~~a~~la~~~~~~l~ll~v~~~~~ 45 (164)
..+.+++.+..|..+...++ +++.|+..|+++.++.-.+..+
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~-~~~~ak~~g~~vi~iT~~~~s~ 150 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLE-ALKKAKELNMLCLGLSGKGGGM 150 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEEGGGTT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCCCcc
Confidence 35689999999998887664 5566888899988887655443
No 486
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.15 E-value=1.6e+02 Score=19.88 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhcCCceEEE-EecCCh--hHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQKEANIVAK-IYWGDA--RERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~-~~~g~~--~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+.|..+... ...++. ....++.....++|-||+....... ...+ .+...+.||+++-
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~-~l~~~~iPvV~~~ 95 (290)
T 3clk_A 24 QQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTD-------DNLQ-LLQSSDVPYCFLS 95 (290)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-----------CHH-HHHCC--CEEEES
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCH-------HHHH-HHHhCCCCEEEEc
Confidence 466677777787777766543 222333 2335566666789998885432211 1223 3456778988875
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 96 ~ 96 (290)
T 3clk_A 96 M 96 (290)
T ss_dssp C
T ss_pred C
Confidence 4
No 487
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=25.12 E-value=55 Score=23.00 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=6.8
Q ss_pred hhCCCCEEEEecc
Q 031195 116 EDLKLDSLVMGSR 128 (164)
Q Consensus 116 ~~~~~dlivlg~~ 128 (164)
.+.++|+||+.+.
T Consensus 83 ~~~g~d~IVIACN 95 (274)
T 3uhf_A 83 EQFQIDMLIIACN 95 (274)
T ss_dssp TTSCCSEEEECCH
T ss_pred HHCCCCEEEEeCC
Confidence 3445555555544
No 488
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=25.11 E-value=1e+02 Score=17.56 Aligned_cols=70 Identities=11% Similarity=0.057 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhc-CCccEEEEeCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTH-APCPVTIVKDP 159 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~-~~~pVliv~~~ 159 (164)
...+.+...+...|..+. ...+ .++.++......+|++++...-.+ ..+. .....+-.. ..+||+++-..
T Consensus 14 ~~~~~l~~~l~~~~~~v~---~~~~-~~~~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 14 PVRKSLAFMLTMNGFAVK---MHQS-AEAFLAFAPDVRNGVLVTDLRMPD-MSGV---ELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp HHHHHHHHHHHHTTCEEE---EESC-HHHHHHHGGGCCSEEEEEECCSTT-SCHH---HHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHHHHhCCcEEE---EeCC-HHHHHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHhcCCCCCEEEEECC
Confidence 334445555555555432 1233 456667777788999999854321 1111 123444333 35899888543
No 489
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.10 E-value=15 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=16.3
Q ss_pred CChhHHHHHHHh-hCCCCEEEEeccCCc
Q 031195 105 GDARERLLEAIE-DLKLDSLVMGSRGLG 131 (164)
Q Consensus 105 g~~~~~I~~~a~-~~~~dlivlg~~~~~ 131 (164)
|+-.+.+.+.++ +.++.+|.+.+.+..
T Consensus 138 GdDl~~v~~~~~~~~~~pVi~v~tpgf~ 165 (483)
T 3pdi_A 138 GDDVDAVCKAAAERFGTPVIPVDSAGFY 165 (483)
T ss_dssp TCCHHHHHHHHHHHHCSCEEEECCCGGG
T ss_pred cCCHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 655556666554 357777777665543
No 490
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=25.10 E-value=1.7e+02 Score=20.23 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhc-CCceEEEEecCChh--HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 81 IDALDLLDTASRQK-EANIVAKIYWGDAR--ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 81 ~~~l~~~~~~~~~~-~~~~~~~~~~g~~~--~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
....+.+.+.+.+. |..+......++.. ...++.....++|-||+......... ...+ .+...++||+++-
T Consensus 21 ~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~ 94 (325)
T 2x7x_A 21 HKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMT-----PIVE-EAYQKGIPVILVD 94 (325)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHH-----HHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHHH-HHHHCCCeEEEeC
Confidence 35566677777777 77766544334443 23455555678999988643211111 1122 2345678998885
Q ss_pred C
Q 031195 158 D 158 (164)
Q Consensus 158 ~ 158 (164)
.
T Consensus 95 ~ 95 (325)
T 2x7x_A 95 R 95 (325)
T ss_dssp S
T ss_pred C
Confidence 4
No 491
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=25.07 E-value=98 Score=20.60 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhhcCCccEEEEe
Q 031195 109 ERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMTHAPCPVTIVK 157 (164)
Q Consensus 109 ~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~~~~~pVliv~ 157 (164)
.+..+.+.+.++|.|++......+...-+.-.....+....++||++.-
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~G 205 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASG 205 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeC
Confidence 4556677777899998865443222111111234556666678888753
No 492
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=25.01 E-value=1.5e+02 Score=19.30 Aligned_cols=69 Identities=12% Similarity=-0.061 Sum_probs=36.9
Q ss_pred HHHHHHHhhh-cCCceEEEEecCChhHHHHHHHhhCCCCEEEEeccCCcccchhcccchhHHHhh--cCCccEEEEeC
Q 031195 84 LDLLDTASRQ-KEANIVAKIYWGDARERLLEAIEDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT--HAPCPVTIVKD 158 (164)
Q Consensus 84 l~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~--~~~~pVliv~~ 158 (164)
.+.+...+.. .+..+. ....+..+++...+....+|++++...-.+ ..++ .....+-. ...+||+++-.
T Consensus 20 ~~~l~~~L~~~~~~~v~--~~~~~~~~~~~~~~~~~~~dlvllD~~mp~-~~G~---~~~~~lr~~~~~~~~ii~lt~ 91 (225)
T 3klo_A 20 SRLLKEALESKLPLALE--ITPFSELWLEENKPESRSIQMLVIDYSRIS-DDVL---TDYSSFKHISCPDAKEVIINC 91 (225)
T ss_dssp HHHHHHHHHHHSSEEEE--EECGGGHHHHTTCSGGGGCCEEEEEGGGCC-HHHH---HHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHhhCCCceEE--EEeCCcHHHHHHHhhccCCCEEEEeCCCCC-CCHH---HHHHHHHHhhCCCCcEEEEEC
Confidence 3444444442 233332 223455666666667778999999854222 1111 13344443 34589988853
No 493
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=24.96 E-value=1.2e+02 Score=19.84 Aligned_cols=34 Identities=9% Similarity=-0.130 Sum_probs=19.5
Q ss_pred eEEEEeCCC---ccHHHHHHHHHHhcCCCCCeEE-EEEE
Q 031195 6 KIGVALDFS---PSSKFALSWAVNNLLDKGDTLY-IIHI 40 (164)
Q Consensus 6 ~iLv~vd~s---~~~~~al~~a~~la~~~~~~l~-ll~v 40 (164)
|||+-.... ..+..+++++.+.+. .+..+. ++.+
T Consensus 8 kIl~I~GS~r~~s~t~~la~~~~~~~~-~g~~v~~~idL 45 (199)
T 4hs4_A 8 HFVTLLGSLRKASFNAAVARALPEIAP-EGIAITPLGSI 45 (199)
T ss_dssp EEEEEECCCSTTCHHHHHHHHHHHHCC-TTEEEEECCCG
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHcc-CCCEEEEEEeh
Confidence 666554332 235677788777664 455665 4444
No 494
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=24.93 E-value=47 Score=19.92 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcCCceEEEEecCC-hhHHHHH-HHhhCCCCEEEEeccC
Q 031195 83 ALDLLDTASRQKEANIVAKIYWGD-ARERLLE-AIEDLKLDSLVMGSRG 129 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~-~a~~~~~dlivlg~~~ 129 (164)
+-+.+.+.+.+.|+++..+..... +...+.. .+.+ +|+||+....
T Consensus 24 AAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~--Ad~VIiA~d~ 70 (111)
T 2kyr_A 24 AAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAE--ATIIIHSVAV 70 (111)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHH--CSEEEEEESS
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHh--CCEEEEEeCC
Confidence 345566677777887776554422 2111211 2444 9999887654
No 495
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=24.91 E-value=1.5e+02 Score=24.19 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=21.6
Q ss_pred ChhHHHHHHHhhCCCCEEEEeccCCc
Q 031195 106 DARERLLEAIEDLKLDSLVMGSRGLG 131 (164)
Q Consensus 106 ~~~~~I~~~a~~~~~dlivlg~~~~~ 131 (164)
-+.+.+++.+.+.++|+|+|.+....
T Consensus 634 v~~eeiv~aA~e~~adiVglSsl~~~ 659 (727)
T 1req_A 634 QTPEETARQAVEADVHVVGVSSLAGG 659 (727)
T ss_dssp BCHHHHHHHHHHTTCSEEEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCEEEEeeecHh
Confidence 35789999999999999999875443
No 496
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=24.88 E-value=2.2e+02 Score=21.35 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=7.0
Q ss_pred HHHHHHhhCCCCEEEEe
Q 031195 110 RLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 110 ~I~~~a~~~~~dlivlg 126 (164)
.+++.+.+.+...+.++
T Consensus 258 ~l~~~~~~~g~~~~wI~ 274 (479)
T 3sm9_A 258 ELIAAASRANASFTWVA 274 (479)
T ss_dssp HHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHhCCEEEEEE
Confidence 34444444444333333
No 497
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=24.86 E-value=1.4e+02 Score=21.86 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCCceEEEE-ecCC----hhHHHHHHHhhCCCCEEE-Eec
Q 031195 83 ALDLLDTASRQKEANIVAKI-YWGD----ARERLLEAIEDLKLDSLV-MGS 127 (164)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~-~~g~----~~~~I~~~a~~~~~dliv-lg~ 127 (164)
..+++.+.+.+.|+.+.... .+++ ..+.+.+.+++.++|.|| +|.
T Consensus 47 ~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 47 VVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp HHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 45666666666676654211 2233 256777778889999887 553
No 498
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=24.84 E-value=1.2e+02 Score=18.09 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCChhHHHHHHH--------hhCCCCEEEEeccCCcccchhcccchhHHHhh---cCC
Q 031195 82 DALDLLDTASRQKEANIVAKIYWGDARERLLEAI--------EDLKLDSLVMGSRGLGTVRRIILGSVSNYVMT---HAP 150 (164)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a--------~~~~~dlivlg~~~~~~~~~~~~~s~~~~i~~---~~~ 150 (164)
...+.+.+.+...|....... ..+..+++...- ....+|+|++...-.+ ..++ .+...+-. ...
T Consensus 15 ~~~~~l~~~L~~~g~~~~v~~-~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ 89 (152)
T 3heb_A 15 GHARLIEKNIRRAGVNNEIIA-FTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPD-MTGI---DILKLVKENPHTRR 89 (152)
T ss_dssp HHHHHHHHHHHHTTCCCCEEE-ESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSS-SBHH---HHHHHHHHSTTTTT
T ss_pred HHHHHHHHHHHhCCCcceEEE-eCCHHHHHHHHhccccccccccCCCCEEEEeCCCCC-CcHH---HHHHHHHhcccccC
Confidence 455566666666666433322 234444443332 4678999999854222 1111 13344433 235
Q ss_pred ccEEEEeCC
Q 031195 151 CPVTIVKDP 159 (164)
Q Consensus 151 ~pVliv~~~ 159 (164)
+||+++-..
T Consensus 90 ~pii~~t~~ 98 (152)
T 3heb_A 90 SPVVILTTT 98 (152)
T ss_dssp SCEEEEESC
T ss_pred CCEEEEecC
Confidence 888888643
No 499
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=24.83 E-value=1.3e+02 Score=19.77 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=21.8
Q ss_pred HHHHhhhcCCc---eEEEEecCC---hhHHHHHHHhhCCCCEEEEe
Q 031195 87 LDTASRQKEAN---IVAKIYWGD---ARERLLEAIEDLKLDSLVMG 126 (164)
Q Consensus 87 ~~~~~~~~~~~---~~~~~~~g~---~~~~I~~~a~~~~~dlivlg 126 (164)
+.+.+.+.|.+ ....++.++ ..++|.+.+.+.++|+||..
T Consensus 28 L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitT 73 (195)
T 1di6_A 28 LEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTT 73 (195)
T ss_dssp HHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 44555556655 233344343 23455555554579999874
No 500
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=24.77 E-value=2.1e+02 Score=21.04 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=27.1
Q ss_pred CChhHHHHHHHhhCCCCEEEEeccCCc-ccchhcccchhHHHhhcCCccEE
Q 031195 105 GDARERLLEAIEDLKLDSLVMGSRGLG-TVRRIILGSVSNYVMTHAPCPVT 154 (164)
Q Consensus 105 g~~~~~I~~~a~~~~~dlivlg~~~~~-~~~~~~~~s~~~~i~~~~~~pVl 154 (164)
|...+...+....+ +|.||+-..... ..+.-......+.+.+++++||+
T Consensus 112 gEsl~DTarvLs~y-~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVI 161 (359)
T 1zq6_A 112 EEHIAEVARVLGRY-VDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVI 161 (359)
T ss_dssp CEEHHHHHHHHHHH-CSEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEE
T ss_pred CCcHHHHHHHHHHh-CcEEEEeccccccccccccchHHHHHHHHhCCCCEE
Confidence 43344444444445 999999755211 00000123356778888999976
Done!