Query 031197
Match_columns 164
No_of_seqs 126 out of 970
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 3.5E-37 1.2E-41 229.6 10.6 132 2-135 8-142 (174)
2 3swr_A DNA (cytosine-5)-methyl 100.0 3.5E-28 1.2E-32 219.0 15.2 128 3-134 141-280 (1002)
3 4dov_A ORC1, origin recognitio 99.9 1.6E-26 5.5E-31 167.4 16.2 124 8-134 21-159 (163)
4 3av4_A DNA (cytosine-5)-methyl 99.9 4.1E-27 1.4E-31 216.4 15.2 127 3-133 452-591 (1330)
5 3swr_A DNA (cytosine-5)-methyl 99.9 1.3E-22 4.6E-27 182.8 14.1 127 5-133 319-499 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.9 1.5E-22 5.2E-27 179.7 11.2 125 6-133 43-178 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.8 4.2E-21 1.4E-25 176.7 11.8 127 5-133 631-810 (1330)
8 2fl7_A Regulatory protein SIR3 99.7 6.5E-17 2.2E-21 123.5 11.1 123 14-137 44-192 (232)
9 1m4z_A Origin recognition comp 99.7 7.1E-17 2.4E-21 123.7 11.1 125 13-138 43-193 (238)
10 1wep_A PHF8; structural genomi 98.7 3.1E-09 1.1E-13 68.6 1.7 36 129-164 3-38 (79)
11 3kqi_A GRC5, PHD finger protei 98.5 2.8E-08 9.7E-13 63.4 0.8 30 135-164 7-36 (75)
12 1we9_A PHD finger family prote 98.4 7.9E-08 2.7E-12 59.4 1.7 28 137-164 5-33 (64)
13 2vpb_A Hpygo1, pygopus homolog 98.4 5.1E-08 1.7E-12 60.6 0.7 25 140-164 11-36 (65)
14 2kgg_A Histone demethylase jar 98.3 1E-07 3.5E-12 56.5 1.2 25 140-164 5-30 (52)
15 1wee_A PHD finger family prote 98.2 3.2E-07 1.1E-11 58.0 1.8 30 135-164 13-42 (72)
16 3o7a_A PHD finger protein 13 v 98.2 2.3E-07 7.8E-12 55.0 0.8 25 139-164 5-29 (52)
17 1wem_A Death associated transc 98.1 5.1E-07 1.7E-11 57.6 1.3 28 136-164 14-41 (76)
18 3o70_A PHD finger protein 13; 98.1 8.3E-07 2.8E-11 55.5 1.4 28 136-164 17-44 (68)
19 1wew_A DNA-binding family prot 97.8 6.1E-06 2.1E-10 52.8 1.7 28 136-164 14-43 (78)
20 3kv5_D JMJC domain-containing 97.8 5.2E-06 1.8E-10 70.2 1.0 32 133-164 32-63 (488)
21 2k16_A Transcription initiatio 97.4 3.8E-05 1.3E-09 48.6 1.0 27 137-164 17-44 (75)
22 2rsd_A E3 SUMO-protein ligase 97.4 6.1E-05 2.1E-09 46.8 1.7 28 136-164 8-37 (68)
23 3c6w_A P28ING5, inhibitor of g 97.2 5.4E-05 1.9E-09 45.8 0.1 27 136-164 7-36 (59)
24 2lv9_A Histone-lysine N-methyl 97.2 9.5E-05 3.3E-09 49.3 1.2 25 139-164 29-53 (98)
25 1x4i_A Inhibitor of growth pro 97.2 0.0001 3.4E-09 46.2 1.0 26 137-164 5-33 (70)
26 1wen_A Inhibitor of growth fam 97.1 9.3E-05 3.2E-09 46.4 0.7 27 136-164 14-43 (71)
27 2g6q_A Inhibitor of growth pro 97.1 7.1E-05 2.4E-09 45.7 0.1 27 136-164 9-38 (62)
28 1weu_A Inhibitor of growth fam 97.1 9E-05 3.1E-09 48.7 0.4 27 136-164 34-63 (91)
29 2vnf_A ING 4, P29ING4, inhibit 97.0 0.00011 3.8E-09 44.5 0.1 27 136-164 8-37 (60)
30 2jmi_A Protein YNG1, ING1 homo 96.9 0.00018 6.3E-09 47.1 0.6 27 136-164 24-53 (90)
31 3pur_A Lysine-specific demethy 96.0 0.0018 6.1E-08 54.9 1.4 20 145-164 50-69 (528)
32 1f62_A Transcription factor WS 95.1 0.0077 2.6E-07 34.8 1.5 22 142-164 5-26 (51)
33 3zzs_A Transcription attenuati 91.4 0.5 1.7E-05 28.2 5.0 48 58-105 13-60 (65)
34 2ku3_A Bromodomain-containing 90.9 0.092 3.2E-06 32.5 1.6 25 140-164 19-44 (71)
35 2l7p_A Histone-lysine N-methyl 90.8 0.1 3.4E-06 34.6 1.7 18 145-162 20-37 (100)
36 2yt5_A Metal-response element- 90.1 0.11 3.8E-06 31.3 1.4 23 142-164 11-34 (66)
37 2e6r_A Jumonji/ARID domain-con 88.6 0.12 3.9E-06 33.7 0.7 24 140-164 18-42 (92)
38 2l43_A N-teminal domain from h 88.5 0.15 5E-06 32.9 1.1 25 140-164 28-53 (88)
39 1xwh_A Autoimmune regulator; P 87.9 0.24 8.4E-06 29.9 1.8 22 139-164 9-31 (66)
40 2l5u_A Chromodomain-helicase-D 87.7 0.18 6E-06 30.1 1.1 25 136-164 9-34 (61)
41 2puy_A PHD finger protein 21A; 86.3 0.24 8.3E-06 29.3 1.1 19 142-164 10-28 (60)
42 2yql_A PHD finger protein 21A; 86.0 0.28 9.6E-06 28.6 1.3 22 139-164 10-32 (56)
43 3v43_A Histone acetyltransfera 83.9 0.43 1.5E-05 31.9 1.6 23 142-164 66-88 (112)
44 1wev_A Riken cDNA 1110020M19; 83.7 0.47 1.6E-05 30.4 1.6 25 140-164 18-44 (88)
45 2lri_C Autoimmune regulator; Z 82.8 0.44 1.5E-05 28.9 1.2 19 142-164 17-35 (66)
46 3asl_A E3 ubiquitin-protein li 81.6 0.55 1.9E-05 28.8 1.3 22 142-164 23-44 (70)
47 3shb_A E3 ubiquitin-protein li 81.5 0.4 1.4E-05 30.1 0.7 22 142-164 31-52 (77)
48 1gtf_A Trp RNA-binding attenua 81.0 2.8 9.5E-05 25.4 4.2 48 58-105 17-64 (74)
49 3zte_A Tryptophan operon RNA-b 80.9 2.8 9.6E-05 25.8 4.2 48 58-105 21-68 (78)
50 4hcz_A PHD finger protein 1; p 79.8 1.9 6.6E-05 25.4 3.1 28 22-51 3-30 (58)
51 2m0o_A PHD finger protein 1; t 79.6 1.4 4.8E-05 27.5 2.6 29 21-51 25-53 (79)
52 2ysm_A Myeloid/lymphoid or mix 79.1 0.7 2.4E-05 30.7 1.3 22 142-164 59-80 (111)
53 2e61_A Zinc finger CW-type PWW 79.0 1 3.4E-05 27.6 1.8 17 146-162 11-29 (69)
54 2e6s_A E3 ubiquitin-protein li 78.8 0.82 2.8E-05 28.6 1.5 22 142-164 31-52 (77)
55 2a7y_A Hypothetical protein RV 77.2 2.9 9.9E-05 26.4 3.6 42 22-64 5-46 (83)
56 2kwj_A Zinc finger protein DPF 74.1 1.1 3.8E-05 29.9 1.2 22 142-164 63-84 (114)
57 2eqj_A Metal-response element- 72.6 5.7 0.0002 24.0 4.0 29 21-51 12-40 (66)
58 4bbq_A Lysine-specific demethy 72.6 0.42 1.4E-05 32.0 -1.3 15 150-164 72-86 (117)
59 1mm2_A MI2-beta; PHD, zinc fin 72.1 1 3.5E-05 26.7 0.6 22 139-164 10-32 (61)
60 2xk0_A Polycomb protein PCL; t 70.6 4.9 0.00017 24.5 3.3 26 21-48 14-39 (69)
61 3llr_A DNA (cytosine-5)-methyl 70.1 3.8 0.00013 29.0 3.3 45 20-66 14-61 (154)
62 3qby_A Hepatoma-derived growth 68.8 3.9 0.00013 26.3 2.9 41 21-63 4-46 (94)
63 2e5p_A Protein PHF1, PHD finge 68.3 11 0.00039 22.7 4.6 29 21-51 8-36 (68)
64 4fu6_A PC4 and SFRS1-interacti 67.8 3.9 0.00013 28.7 2.9 42 21-64 21-64 (153)
65 2gfu_A DNA mismatch repair pro 66.7 6.7 0.00023 26.8 3.9 44 20-65 20-69 (134)
66 2l8d_A Lamin-B receptor; DNA b 65.9 5.8 0.0002 23.9 2.9 28 21-49 8-35 (66)
67 3ask_A E3 ubiquitin-protein li 65.8 2.4 8.1E-05 32.0 1.5 45 22-67 2-52 (226)
68 2e6z_A Transcription elongatio 63.0 5.1 0.00017 23.4 2.3 40 21-65 6-45 (59)
69 1ri0_A Hepatoma-derived growth 62.0 3.2 0.00011 27.6 1.4 42 20-63 17-60 (110)
70 2daq_A WHSC1L1 protein, isofor 61.8 3.4 0.00012 27.2 1.6 30 18-49 4-33 (110)
71 2e5q_A PHD finger protein 19; 61.8 6.4 0.00022 23.4 2.5 29 21-51 6-34 (63)
72 4gne_A Histone-lysine N-methyl 61.1 2.9 9.8E-05 27.8 1.1 14 151-164 25-40 (107)
73 2dig_A Lamin-B receptor; tudor 60.6 8.6 0.00029 23.2 3.0 28 21-49 11-38 (68)
74 1khc_A DNA cytosine-5 methyltr 59.5 4.9 0.00017 28.1 2.1 43 20-64 9-54 (147)
75 2l89_A PWWP domain-containing 56.7 7.5 0.00026 25.6 2.6 43 20-64 3-52 (108)
76 1nz9_A Transcription antitermi 56.6 12 0.0004 21.5 3.2 44 21-67 3-46 (58)
77 3p8d_A Medulloblastoma antigen 54.8 12 0.00042 22.6 3.1 36 22-63 6-41 (67)
78 3bcw_A Uncharacterized protein 52.0 19 0.00066 24.0 4.1 19 18-36 86-104 (123)
79 2e2z_A TIM15; protein import, 51.1 5.1 0.00018 26.3 1.0 12 151-162 36-47 (100)
80 1o5u_A Novel thermotoga mariti 50.3 17 0.00059 23.3 3.5 22 14-35 62-84 (101)
81 3m9q_A Protein MALE-specific l 48.9 35 0.0012 22.2 4.8 38 15-52 12-51 (101)
82 1wgs_A MYST histone acetyltran 48.3 28 0.00097 23.8 4.5 34 21-56 11-45 (133)
83 4a4f_A SurviVal of motor neuro 43.4 23 0.00079 20.7 3.0 29 21-50 7-35 (64)
84 2jne_A Hypothetical protein YF 43.2 3.8 0.00013 26.8 -0.6 26 138-163 32-58 (101)
85 2opk_A Hypothetical protein; p 42.5 22 0.00075 22.9 3.1 21 15-35 67-89 (112)
86 2jr7_A DPH3 homolog; DESR1, CS 41.4 8.8 0.0003 24.6 1.0 12 152-163 44-55 (89)
87 1yop_A KTI11P; zinc finger, me 40.4 9.5 0.00032 24.1 1.0 13 151-163 43-55 (83)
88 3lwc_A Uncharacterized protein 39.5 22 0.00076 23.4 2.8 21 15-35 73-93 (119)
89 2f5k_A MORF-related gene 15 is 39.3 65 0.0022 21.0 5.0 28 21-51 21-48 (102)
90 1vq8_T 50S ribosomal protein L 38.4 36 0.0012 22.9 3.7 29 21-51 41-69 (120)
91 3p8b_B Transcription antitermi 37.5 31 0.0011 23.7 3.4 43 21-66 90-132 (152)
92 2l6l_A DNAJ homolog subfamily 37.3 11 0.00037 26.2 1.0 27 137-163 111-143 (155)
93 2jrp_A Putative cytoplasmic pr 37.2 11 0.00038 23.6 0.9 22 142-163 7-28 (81)
94 1fp0_A KAP-1 corepressor; PHD 37.1 13 0.00044 23.7 1.2 21 140-164 27-48 (88)
95 4axo_A EUTQ, ethanolamine util 36.9 23 0.0008 24.7 2.7 44 15-71 98-141 (151)
96 3j21_U 50S ribosomal protein L 36.5 43 0.0015 22.5 3.9 29 21-51 44-72 (121)
97 1mhn_A SurviVal motor neuron p 36.3 60 0.0021 18.4 4.5 28 22-50 3-30 (59)
98 1wge_A Hypothetical protein 26 36.3 12 0.00041 23.6 1.0 12 152-163 51-62 (83)
99 3m9p_A MALE-specific lethal 3 35.5 77 0.0026 20.9 4.9 34 19-52 16-51 (110)
100 2pyt_A Ethanolamine utilizatio 35.3 26 0.00089 23.6 2.7 22 14-35 88-109 (133)
101 3qii_A PHD finger protein 20; 35.2 36 0.0012 21.5 3.1 36 21-62 20-55 (85)
102 2ozj_A Cupin 2, conserved barr 34.5 33 0.0011 21.7 3.0 22 15-36 72-93 (114)
103 3oa6_A MALE-specific lethal 3 34.2 91 0.0031 20.6 5.1 32 21-52 18-51 (110)
104 2ro0_A Histone acetyltransfera 33.6 51 0.0018 21.0 3.7 29 21-52 22-50 (92)
105 2rnz_A Histone acetyltransfera 33.4 54 0.0019 21.0 3.8 29 21-52 24-52 (94)
106 2qqr_A JMJC domain-containing 33.2 36 0.0012 22.8 3.0 28 21-50 4-31 (118)
107 3v2d_Y 50S ribosomal protein L 32.9 43 0.0015 22.1 3.3 30 21-52 5-34 (110)
108 2lcc_A AT-rich interactive dom 31.3 36 0.0012 20.9 2.6 31 21-51 4-35 (76)
109 2equ_A PHD finger protein 20-l 31.0 44 0.0015 20.3 3.0 28 21-50 8-35 (74)
110 3iuw_A Activating signal coint 31.0 20 0.00067 22.6 1.3 35 14-48 29-66 (83)
111 2oqk_A Putative translation in 30.6 33 0.0011 22.8 2.5 26 23-50 71-96 (117)
112 3u5e_Y L33, YL33, 60S ribosoma 29.0 62 0.0021 22.0 3.7 29 21-51 48-76 (127)
113 2i45_A Hypothetical protein; n 28.7 44 0.0015 20.8 2.8 22 14-35 61-83 (107)
114 1v70_A Probable antibiotics sy 28.5 45 0.0015 20.1 2.8 19 17-35 65-83 (105)
115 2vpv_A Protein MIF2, MIF2P; nu 28.2 39 0.0013 23.9 2.7 21 15-35 124-144 (166)
116 1g5v_A SurviVal motor neuron p 27.7 60 0.002 20.4 3.2 28 22-50 10-37 (88)
117 3r8s_U 50S ribosomal protein L 27.6 52 0.0018 21.4 3.0 28 22-51 3-30 (102)
118 2m0d_A Zinc finger and BTB dom 27.5 20 0.00068 15.8 0.8 10 154-163 4-13 (30)
119 3iz5_Y 60S ribosomal protein L 27.4 64 0.0022 22.6 3.6 29 21-51 47-75 (150)
120 2eko_A Histone acetyltransfera 27.3 47 0.0016 21.0 2.7 31 21-51 8-40 (87)
121 2zkr_t 60S ribosomal protein L 27.2 47 0.0016 23.1 2.9 29 21-51 47-76 (145)
122 2kku_A Uncharacterized protein 26.8 33 0.0011 24.3 2.0 40 6-50 44-87 (161)
123 2pfw_A Cupin 2, conserved barr 26.3 50 0.0017 20.7 2.8 21 15-35 68-88 (116)
124 2zjr_R 50S ribosomal protein L 26.0 42 0.0014 22.3 2.4 29 21-51 14-42 (115)
125 1rik_A E6APC1 peptide; E6-bind 26.0 22 0.00076 15.6 0.8 10 154-163 3-12 (29)
126 3h8u_A Uncharacterized conserv 26.0 48 0.0016 21.2 2.7 19 17-35 77-95 (125)
127 4h7l_A Uncharacterized protein 25.8 31 0.0011 24.3 1.7 20 16-35 83-102 (157)
128 2b8m_A Hypothetical protein MJ 25.6 66 0.0022 20.2 3.3 21 15-35 61-82 (117)
129 1wil_A KIAA1045 protein; ring 25.5 24 0.00082 22.4 1.0 26 137-164 14-40 (89)
130 4a17_S RPL26, 60S ribosomal pr 25.5 77 0.0026 21.7 3.7 29 21-51 47-75 (135)
131 3fjs_A Uncharacterized protein 25.2 43 0.0015 21.4 2.3 21 15-35 70-90 (114)
132 4i4a_A Similar to unknown prot 24.1 1.4E+02 0.0048 18.8 5.0 21 15-35 68-88 (128)
133 2jvv_A Transcription antitermi 23.9 1E+02 0.0034 21.7 4.3 45 22-69 127-171 (181)
134 3vhs_A ATPase wrnip1; zinc fin 23.8 33 0.0011 16.6 1.1 11 152-162 5-15 (29)
135 1yhf_A Hypothetical protein SP 23.8 56 0.0019 20.4 2.7 20 16-35 75-94 (115)
136 1at0_A 17-hedgehog; developmen 23.4 71 0.0024 21.7 3.3 28 22-50 91-118 (145)
137 1e0b_A SWI6 protein; chromatin 23.3 1.2E+02 0.0042 18.0 3.9 25 39-63 10-34 (68)
138 3s6w_A Tudor domain-containing 23.3 49 0.0017 18.3 2.0 27 23-50 2-28 (54)
139 1ard_A Yeast transcription fac 23.2 25 0.00084 15.4 0.6 10 154-163 3-12 (29)
140 2kvh_A Zinc finger and BTB dom 23.1 27 0.00094 15.1 0.8 10 154-163 4-13 (27)
141 1x4u_A Zinc finger, FYVE domai 23.1 50 0.0017 20.3 2.2 30 133-162 9-39 (84)
142 3kgz_A Cupin 2 conserved barre 22.9 57 0.0019 22.4 2.7 21 15-35 78-98 (156)
143 2gu9_A Tetracenomycin polyketi 22.8 51 0.0018 20.3 2.3 16 20-35 63-78 (113)
144 1y9q_A Transcriptional regulat 22.7 58 0.002 22.7 2.8 45 16-72 141-185 (192)
145 2lvt_A Zinc finger and BTB dom 28.4 18 0.00061 16.1 0.0 10 154-163 3-12 (29)
146 3d82_A Cupin 2, conserved barr 22.7 51 0.0017 19.9 2.2 21 15-35 64-84 (102)
147 2kvf_A Zinc finger and BTB dom 22.7 28 0.00097 15.2 0.8 10 154-163 4-13 (28)
148 3l2h_A Putative sugar phosphat 22.4 62 0.0021 21.9 2.8 19 16-34 83-101 (162)
149 2lvu_A Zinc finger and BTB dom 27.9 19 0.00063 15.6 0.0 10 154-163 3-12 (26)
150 2lo3_A SAGA-associated factor 22.1 57 0.0019 17.8 1.9 16 146-161 10-25 (44)
151 2elq_A Zinc finger protein 406 21.9 29 0.001 16.4 0.8 12 152-163 8-19 (36)
152 2dgy_A MGC11102 protein; EIF-1 21.8 53 0.0018 21.7 2.2 28 21-49 52-79 (111)
153 1y02_A CARP2, FYVE-ring finger 21.7 27 0.00092 23.5 0.7 30 134-163 15-45 (120)
154 2z0t_A Putative uncharacterize 21.6 78 0.0027 20.8 3.0 40 6-50 17-56 (109)
155 1z2q_A LM5-1; membrane protein 21.3 53 0.0018 20.2 2.1 30 133-162 16-46 (84)
156 3cew_A Uncharacterized cupin p 21.2 53 0.0018 21.0 2.2 21 15-35 62-82 (125)
157 2els_A Zinc finger protein 406 21.0 38 0.0013 15.9 1.1 12 152-163 8-19 (36)
158 2do3_A Transcription elongatio 20.9 94 0.0032 18.7 3.0 29 21-51 16-44 (69)
159 1g2b_A Spectrin alpha chain; c 20.8 88 0.003 17.5 2.9 26 19-45 36-61 (62)
160 3rns_A Cupin 2 conserved barre 20.8 62 0.0021 23.5 2.6 23 14-36 70-92 (227)
161 2kvg_A Zinc finger and BTB dom 20.8 25 0.00087 15.4 0.3 10 154-163 4-13 (27)
162 2bnm_A Epoxidase; oxidoreducta 20.6 68 0.0023 22.4 2.8 16 20-35 163-178 (198)
163 2lvr_A Zinc finger and BTB dom 25.7 22 0.00074 15.8 0.0 10 154-163 4-13 (30)
164 3ibm_A Cupin 2, conserved barr 20.3 72 0.0025 22.0 2.8 21 15-35 90-110 (167)
165 4e2g_A Cupin 2 conserved barre 20.1 62 0.0021 20.6 2.3 21 15-35 75-95 (126)
166 2vqe_Q 30S ribosomal protein S 20.1 75 0.0026 20.8 2.6 28 9-36 37-64 (105)
167 1jt8_A EIF-1A, probable transl 20.1 77 0.0026 20.5 2.7 28 22-50 58-85 (102)
168 2elm_A Zinc finger protein 406 20.1 34 0.0011 16.5 0.8 12 152-163 8-19 (37)
169 2l9z_A PR domain zinc finger p 20.0 26 0.00089 18.7 0.3 12 152-163 10-21 (39)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=100.00 E-value=3.5e-37 Score=229.57 Aligned_cols=132 Identities=27% Similarity=0.416 Sum_probs=103.6
Q ss_pred CCCCCCcceeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecccccCcccccCCCce
Q 031197 2 AKTKPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKE 81 (164)
Q Consensus 2 ~~~~~~~~~Y~s~~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~~~~~~~~E 81 (164)
++++++|.+|+++.++|. +|++||+|||.+++..++++||+|++||++.+|+++++|+|||||+||.++....+.+||
T Consensus 8 ~~~~~~r~~y~~~~~~g~--~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~E 85 (174)
T 1w4s_A 8 GLSSLHRTYSQDCSFKNS--MYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKE 85 (174)
T ss_dssp --------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETTE
T ss_pred cccCCCcEEeEEEEECCE--EEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCCe
Confidence 567888999999989875 999999999999875578999999999999999999999999999999987544456999
Q ss_pred eEEeCCeeeeccceEEEeeEEEeeecccccCC---CCcceEEEeeeeecccceecCC
Q 031197 82 LFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN---VGAEDYFCRFEYKAATGGFTPD 135 (164)
Q Consensus 82 lf~s~~~d~i~~~~I~gkc~V~~~~~~~~~~~---~~~~~f~cr~~yd~~~~~f~p~ 135 (164)
||+|++.+++|+++|.|||.|+..++|.++.+ .+.++|||++.||..+++|.+.
T Consensus 86 vF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i 142 (174)
T 1w4s_A 86 VFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKI 142 (174)
T ss_dssp EEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEEC
T ss_pred eEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccC
Confidence 99999999999999999999999999988754 2468899999999999999964
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.95 E-value=3.5e-28 Score=219.01 Aligned_cols=128 Identities=26% Similarity=0.390 Sum_probs=113.6
Q ss_pred CCCCCcceeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecccccCcccccCCCcee
Q 031197 3 KTKPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82 (164)
Q Consensus 3 ~~~~~~~~Y~s~~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~~~~~~~~El 82 (164)
|++.++.+|+++.++| .+|+|||+|+|.+++++.++|||+|+.||++.+|+++|+|+|||||+||.+|++ ++++||
T Consensus 141 k~~~~~~~Y~s~~v~g--~~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~k~~~v~Wf~rp~ET~lg~~--~~~~El 216 (1002)
T 3swr_A 141 KTDGKKSYYKKVCIDA--ETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGAT--SDPLEL 216 (1002)
T ss_dssp CCBTTEEECSEEEETT--EEEETTCEEEECBSSTTSCCEEEEEEEEEEETTTEEEEEEEEEEEGGGSTTGGG--SCTTEE
T ss_pred ccccCceeeeEEEECC--EEEecCCEEEEecCCCCCCceEEEEEEEeecCCCCeEEEEEEEecchhcccccC--CCCCce
Confidence 6778999999999987 499999999999988777789999999999998999999999999999999988 689999
Q ss_pred EEeCCeeeeccceEEEeeEEEeeec---cccc---C---C---CCcceEEEeeeeecccceecC
Q 031197 83 FLSDHYDVQSAHTIEGKCTVHTFKN---YTKL---E---N---VGAEDYFCRFEYKAATGGFTP 134 (164)
Q Consensus 83 f~s~~~d~i~~~~I~gkc~V~~~~~---~~~~---~---~---~~~~~f~cr~~yd~~~~~f~p 134 (164)
|+|++++++++++|.|||.|+..+. |... . + ..+++|||++.||+++++|..
T Consensus 217 Flsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~ 280 (1002)
T 3swr_A 217 FLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFES 280 (1002)
T ss_dssp EEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEEC
T ss_pred EeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccC
Confidence 9999999999999999999998655 2111 1 1 236799999999999999984
No 3
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.95 E-value=1.6e-26 Score=167.40 Aligned_cols=124 Identities=23% Similarity=0.369 Sum_probs=104.8
Q ss_pred cceeeeEEEcCC---CeEEccCCEEEEccCCCCCCCeEEEEcEEeec---cCCcEEEEEEEeeecccccCccccc----C
Q 031197 8 KKDLDSYNIKGT---NKVVRPGDCVLMRPADSDKPPYVARVEKIEAD---HRNNVKVRVRWYYRPEESIGGRRQF----H 77 (164)
Q Consensus 8 ~~~Y~s~~i~g~---~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~---~~g~~~v~v~Wfyrp~e~~~~~~~~----~ 77 (164)
..+|+++.++-. ..++++||+|+|.++| .+.||||+|++|+++ ....+.++||||+||+|+|.++... .
T Consensus 21 ~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D-~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~ 99 (163)
T 4dov_A 21 QQMYREICMKINDGSEIHIKVGQFVLIQGED-NKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSP 99 (163)
T ss_dssp EEEESEEEEECTTSCEEEEETTCEEEECCSS-SSCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCC
T ss_pred ceeeeEEEEecCCCCCeEEeeCCEEEEeCCc-ccCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCC
Confidence 457999988543 3899999999999998 488899999999986 2356899999999999999885542 4
Q ss_pred CCceeEEeCCee---eeccceEEEeeEEEeeecccccC--CCCcceEEEeeeeecccceecC
Q 031197 78 GAKELFLSDHYD---VQSAHTIEGKCTVHTFKNYTKLE--NVGAEDYFCRFEYKAATGGFTP 134 (164)
Q Consensus 78 ~~~Elf~s~~~d---~i~~~~I~gkc~V~~~~~~~~~~--~~~~~~f~cr~~yd~~~~~f~p 134 (164)
+++|||+++|.+ ++++++|+|+|+|+.++.+..++ ..++++||.|..||.+. |+|
T Consensus 100 ~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k~--f~p 159 (163)
T 4dov_A 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKD--FAP 159 (163)
T ss_dssp CTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSSC--EEE
T ss_pred CCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCCc--cee
Confidence 688999999974 89999999999999998888764 35688999999999887 765
No 4
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.95 E-value=4.1e-27 Score=216.39 Aligned_cols=127 Identities=23% Similarity=0.391 Sum_probs=110.0
Q ss_pred CCCCCcceeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecccccCcccccCCCcee
Q 031197 3 KTKPGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKEL 82 (164)
Q Consensus 3 ~~~~~~~~Y~s~~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~~~~~~~~El 82 (164)
|+..|+.||+++.++|. +|++||+|||.+++++.++|||+|++||++.+|+++|+|+|||||+||.+++. ++++||
T Consensus 452 k~~~~~~~Y~~~~v~g~--~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~~~~~~~WfyRp~ETvlg~~--~~~rEl 527 (1330)
T 3av4_A 452 KIEENRTYYQKVSIDEE--MLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGAT--SDPLEL 527 (1330)
T ss_dssp CCC--CEEECSEEEESS--EEETTCEEEECBCCSSCCCEEEEEEEEEEETTCCEEEEEEEEEEGGGSTTGGG--SCTTEE
T ss_pred eccCCceeeeEEEECCE--EEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCCEEEEEEEEEchHHcccccc--cCCCeE
Confidence 67789999999999985 99999999999887656789999999999999999999999999999999886 689999
Q ss_pred EEeCCeeeeccceEEEeeEEEeeec---ccccC----------CCCcceEEEeeeeecccceec
Q 031197 83 FLSDHYDVQSAHTIEGKCTVHTFKN---YTKLE----------NVGAEDYFCRFEYKAATGGFT 133 (164)
Q Consensus 83 f~s~~~d~i~~~~I~gkc~V~~~~~---~~~~~----------~~~~~~f~cr~~yd~~~~~f~ 133 (164)
|+|+++|++|+++|.|||.|++.++ |.+.. ....++|||++.||+..++|.
T Consensus 528 FlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~ 591 (1330)
T 3av4_A 528 FLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFE 591 (1330)
T ss_dssp EEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEE
T ss_pred EEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccC
Confidence 9999999999999999999999766 43221 124568999999999999998
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.89 E-value=1.3e-22 Score=182.82 Aligned_cols=127 Identities=24% Similarity=0.399 Sum_probs=107.1
Q ss_pred CCCcceeeeEEEcCCCeEEccCCEEEEccCC-----------------------------------------CCCCCeEE
Q 031197 5 KPGKKDLDSYNIKGTNKVVRPGDCVLMRPAD-----------------------------------------SDKPPYVA 43 (164)
Q Consensus 5 ~~~~~~Y~s~~i~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~ig 43 (164)
-+|+.+|.+|..+| .+|++||+|||.++. +..+++||
T Consensus 319 ~~~~~~~~~~~~~g--~~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Ig 396 (1002)
T 3swr_A 319 LDSRVLYYSATKNG--ILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIG 396 (1002)
T ss_dssp CSSCEEESEEEETT--EEEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEE
T ss_pred cCCcEEEEEEEECC--EEEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceee
Confidence 46889999999886 499999999999822 12477899
Q ss_pred EEcEEeeccCCc-------EEEEEEEeeecccccCccc-c-cCCCceeEEeCCeeeeccceEEEeeEEEeeecccccCC-
Q 031197 44 RVEKIEADHRNN-------VKVRVRWYYRPEESIGGRR-Q-FHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN- 113 (164)
Q Consensus 44 ~I~~i~~~~~g~-------~~v~v~Wfyrp~e~~~~~~-~-~~~~~Elf~s~~~d~i~~~~I~gkc~V~~~~~~~~~~~- 113 (164)
+|.+|+.+.++. .+|+|+|||||+||+.+.. . ..+.||||+|++.+++|+++|.|||.|+..+++.+..+
T Consensus 397 rI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~ 476 (1002)
T 3swr_A 397 RIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV 476 (1002)
T ss_dssp EEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH
T ss_pred EEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh
Confidence 999999776544 9999999999999986533 2 34789999999999999999999999999999886543
Q ss_pred ---CCcceEEEeeeeecccceec
Q 031197 114 ---VGAEDYFCRFEYKAATGGFT 133 (164)
Q Consensus 114 ---~~~~~f~cr~~yd~~~~~f~ 133 (164)
.+++.||++..||+.+++|.
T Consensus 477 ~~~~~p~~fyf~~~Yd~~~~~f~ 499 (1002)
T 3swr_A 477 YSMGGPNRFYFLEAYNAKSKSFE 499 (1002)
T ss_dssp HHHTSSSEEEEEEEEETTTTEEE
T ss_pred hccCCCCeEEEEEEEeCCCCeee
Confidence 34588888899999999998
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.88 E-value=1.5e-22 Score=179.66 Aligned_cols=125 Identities=17% Similarity=0.331 Sum_probs=106.8
Q ss_pred CCcceeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecccccCccc-------ccCC
Q 031197 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRR-------QFHG 78 (164)
Q Consensus 6 ~~~~~Y~s~~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~~~-------~~~~ 78 (164)
++|+||+++.++| ++|+|||+|||++++ ..+.+||+|.+|+++.+|..+++|+|||||+||..+.. ...+
T Consensus 43 ~~~~~~~~~~~~~--~~~~~~d~~~v~~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~d 119 (784)
T 4ft4_B 43 KARCHYRSAKVDN--VVYCLGDDVYVKAGE-NEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVDGHKHD 119 (784)
T ss_dssp CEEEECSEEEETT--EEEETTCEEEECCST-TSCCEEEEEEEEEEETTSCEEEEEEEEEEGGGSTTGGGGGCCBTTBCCC
T ss_pred ccceeeeeeeECC--EEEeCCCeEEEeCCC-CCCCEEEEEEEEEEcCCCCEEEEEEEeeChhhhcccccccccccccccc
Confidence 4689999999986 599999999999876 57889999999999999999999999999999986531 2357
Q ss_pred CceeEEeCCeeeeccceEEEeeEEEeeecccccCC----CCcceEEEeeeeecccceec
Q 031197 79 AKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLEN----VGAEDYFCRFEYKAATGGFT 133 (164)
Q Consensus 79 ~~Elf~s~~~d~i~~~~I~gkc~V~~~~~~~~~~~----~~~~~f~cr~~yd~~~~~f~ 133 (164)
.||||+|++.+++++++|.|||+|++.+....... .....|||+..|.....+|.
T Consensus 120 ~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 178 (784)
T 4ft4_B 120 PRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFA 178 (784)
T ss_dssp TTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEE
T ss_pred cceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCcc
Confidence 89999999999999999999999999775443222 12456999999999988887
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.85 E-value=4.2e-21 Score=176.74 Aligned_cols=127 Identities=24% Similarity=0.431 Sum_probs=107.5
Q ss_pred CCCcceeeeEEEcCCCeEEccCCEEEEccCC-----------------------------------------CCCCCeEE
Q 031197 5 KPGKKDLDSYNIKGTNKVVRPGDCVLMRPAD-----------------------------------------SDKPPYVA 43 (164)
Q Consensus 5 ~~~~~~Y~s~~i~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~ig 43 (164)
.+|+.+|.+|..+| .+|++||+|||.++. ...+++||
T Consensus 631 ~~~~~~Y~~~~~~g--~~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Ig 708 (1330)
T 3av4_A 631 VDGRVYCSSITKNG--VVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIG 708 (1330)
T ss_dssp SSSSEEEEEEEETT--EEEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEE
T ss_pred ccCceeeeEEEECC--EEEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEE
Confidence 35889999999887 599999999997761 02456899
Q ss_pred EEcEEeeccC------CcEEEEEEEeeecccccCccc-c-cCCCceeEEeCCeeeeccceEEEeeEEEeeecccccC-C-
Q 031197 44 RVEKIEADHR------NNVKVRVRWYYRPEESIGGRR-Q-FHGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKLE-N- 113 (164)
Q Consensus 44 ~I~~i~~~~~------g~~~v~v~Wfyrp~e~~~~~~-~-~~~~~Elf~s~~~d~i~~~~I~gkc~V~~~~~~~~~~-~- 113 (164)
+|.+||.+.+ +..+|+|+|||||+||..+.. . ..+.||||+|++.+++|+++|.|||.|+...++.+.. +
T Consensus 709 qI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y 788 (1330)
T 3av4_A 709 RIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDY 788 (1330)
T ss_dssp EEEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHH
T ss_pred EEEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccccccc
Confidence 9999998754 579999999999999987632 2 3689999999999999999999999999999887642 1
Q ss_pred --CCcceEEEeeeeecccceec
Q 031197 114 --VGAEDYFCRFEYKAATGGFT 133 (164)
Q Consensus 114 --~~~~~f~cr~~yd~~~~~f~ 133 (164)
.+++.|||+..||..+++|.
T Consensus 789 ~~~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 789 SQGGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp HHTSTTEEEESCEEETTTTEEE
T ss_pred ccCCCCeEEEEEEecccCCeec
Confidence 34789999999999999997
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.71 E-value=6.5e-17 Score=123.48 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=95.2
Q ss_pred EEEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeecc-CCcEEEEEEEeeecccccC-------ccc--------cc-
Q 031197 14 YNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR--------QF- 76 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~-~g~~~v~v~Wfyrp~e~~~-------~~~--------~~- 76 (164)
..-..+|.++++||+|.|..++ .+...++.|.+|.-.. +.-+.+.|+||+|..|+.. ... .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (232)
T 2fl7_A 44 LKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFY 122 (232)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 4444578999999999998876 4667788888887655 4568999999999999864 111 23
Q ss_pred -------CCCceeEEeCCeeeeccceEEEeeEEEeeeccccc--CCCCcceEEEeeeeecccceecCCCc
Q 031197 77 -------HGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTPDRV 137 (164)
Q Consensus 77 -------~~~~Elf~s~~~d~i~~~~I~gkc~V~~~~~~~~~--~~~~~~~f~cr~~yd~~~~~f~p~~~ 137 (164)
...||||+|.+.+.|-+.+|+++|.|++.++|..+ ....+.+||||+++|+....|++-.|
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~ 192 (232)
T 2fl7_A 123 KDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDI 192 (232)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCH
T ss_pred hhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCccccccH
Confidence 68999999999999999999999999999999976 43457899999999998888887444
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.71 E-value=7.1e-17 Score=123.71 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=102.0
Q ss_pred eEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeecc-CCcEEEEEEEeeecccccC-------ccc--------cc
Q 031197 13 SYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNVKVRVRWYYRPEESIG-------GRR--------QF 76 (164)
Q Consensus 13 s~~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~-~g~~~v~v~Wfyrp~e~~~-------~~~--------~~ 76 (164)
...-..+|.++++||+|.|..++ .+...++.|.+|.-.. +.-+.+.|+||+|..|+.. ... .+
T Consensus 43 ~L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~ 121 (238)
T 1m4z_A 43 YLKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNY 121 (238)
T ss_dssp EEEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHH
T ss_pred EEEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhh
Confidence 34444578999999999998876 4667788888887765 5568999999999999864 111 23
Q ss_pred --------CCCceeEEeCCeeeeccceEEEeeEEEeeeccccc--CCCCcceEEEeeeeecccceecCCCcc
Q 031197 77 --------HGAKELFLSDHYDVQSAHTIEGKCTVHTFKNYTKL--ENVGAEDYFCRFEYKAATGGFTPDRVA 138 (164)
Q Consensus 77 --------~~~~Elf~s~~~d~i~~~~I~gkc~V~~~~~~~~~--~~~~~~~f~cr~~yd~~~~~f~p~~~~ 138 (164)
...||||+|.+.+.|-+.+|+++|.|++.++|..+ ....+.+||||+++|+....|.+-.|.
T Consensus 122 ~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~ 193 (238)
T 1m4z_A 122 YNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIE 193 (238)
T ss_dssp HHHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHH
T ss_pred hhhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccccHH
Confidence 68999999999999999999999999999999976 445578999999999988888874443
No 10
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.72 E-value=3.1e-09 Score=68.61 Aligned_cols=36 Identities=39% Similarity=0.953 Sum_probs=33.6
Q ss_pred cceecCCCcceeeeecCCCCCCCceEeCcccccccC
Q 031197 129 TGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 129 ~~~f~p~~~~~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
.+.|.++.....|+|.+|.+++..||||+.|+.|||
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH 38 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWFH 38 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEEE
T ss_pred CCccCccCCccEEEcCCccCCCCceEEcCCCCCcEE
Confidence 467888899999999999999999999999999999
No 11
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.47 E-value=2.8e-08 Score=63.44 Aligned_cols=30 Identities=43% Similarity=1.249 Sum_probs=27.8
Q ss_pred CCcceeeeecCCCCCCCceEeCcccccccC
Q 031197 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 135 ~~~~~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
......|+|.+|++++..||||+.|+.|||
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH 36 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWFH 36 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEEE
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCEe
Confidence 466789999999999999999999999999
No 12
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.40 E-value=7.9e-08 Score=59.38 Aligned_cols=28 Identities=25% Similarity=0.770 Sum_probs=25.7
Q ss_pred cceee-eecCCCCCCCceEeCcccccccC
Q 031197 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 137 ~~~~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
-...| +|.+|++++..||||+.|..|||
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH 33 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFH 33 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEE
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCC
Confidence 34689 99999999999999999999999
No 13
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.39 E-value=5.1e-08 Score=60.55 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=23.4
Q ss_pred eeeecCCCCCCCceEeCc-ccccccC
Q 031197 140 YCKCEMPYNPDDLMVQCE-GCKDWIY 164 (164)
Q Consensus 140 ~C~C~~p~~pd~~~~~C~-~C~~w~h 164 (164)
-++|.+|++|+++||+|+ +|++|||
T Consensus 11 C~~C~~p~~~~~~mI~CD~~C~~WfH 36 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEASCQKWFH 36 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTTTCCEEE
T ss_pred CccCCCccCCCCCeEecccCccccCc
Confidence 348999999999999999 9999999
No 14
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.35 E-value=1e-07 Score=56.53 Aligned_cols=25 Identities=32% Similarity=0.828 Sum_probs=23.2
Q ss_pred eeeecCCCCCCCceEeCc-ccccccC
Q 031197 140 YCKCEMPYNPDDLMVQCE-GCKDWIY 164 (164)
Q Consensus 140 ~C~C~~p~~pd~~~~~C~-~C~~w~h 164 (164)
-|+|.+|++++..||+|+ .|+.|||
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH 30 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFH 30 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEE
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCc
Confidence 368999999999999999 8999999
No 15
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.24 E-value=3.2e-07 Score=57.97 Aligned_cols=30 Identities=33% Similarity=0.779 Sum_probs=27.3
Q ss_pred CCcceeeeecCCCCCCCceEeCcccccccC
Q 031197 135 DRVAVYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 135 ~~~~~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
..+...|+|.++.+....||||+.|+.|||
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H 42 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCGVWHH 42 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSCEEEE
T ss_pred CCcceEeeCCCccCCCCcEEECCCCCCccC
Confidence 467889999999877789999999999999
No 16
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.22 E-value=2.3e-07 Score=55.00 Aligned_cols=25 Identities=36% Similarity=1.019 Sum_probs=23.0
Q ss_pred eeeeecCCCCCCCceEeCcccccccC
Q 031197 139 VYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 139 ~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
..|+|.+|.+ +..||||+.|+.|||
T Consensus 5 ~~C~C~~~~~-~~~MI~Cd~C~~W~H 29 (52)
T 3o7a_A 5 VTCFCMKPFA-GRPMIECNECHTWIH 29 (52)
T ss_dssp BCSTTCCBCT-TCCEEECTTTCCEEE
T ss_pred eEEEeCCcCC-CCCEEEcCCCCcccc
Confidence 5899999977 789999999999999
No 17
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.15 E-value=5.1e-07 Score=57.62 Aligned_cols=28 Identities=36% Similarity=1.057 Sum_probs=24.8
Q ss_pred CcceeeeecCCCCCCCceEeCcccccccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
.....|+|.+|.+ +..||||+.|+.|||
T Consensus 14 ~~~~~C~C~~~~~-~~~MI~Cd~C~~WfH 41 (76)
T 1wem_A 14 PNALYCICRQPHN-NRFMICCDRCEEWFH 41 (76)
T ss_dssp TTCCCSTTCCCCC-SSCEEECSSSCCEEE
T ss_pred CCCCEEECCCccC-CCCEEEeCCCCCcEe
Confidence 4567999999986 679999999999999
No 18
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.09 E-value=8.3e-07 Score=55.48 Aligned_cols=28 Identities=32% Similarity=0.875 Sum_probs=24.8
Q ss_pred CcceeeeecCCCCCCCceEeCcccccccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
.-...|+|.+|.+ +..||||+.|+.|||
T Consensus 17 ~~~~~CiC~~~~~-~~~MIqCd~C~~WfH 44 (68)
T 3o70_A 17 QGLVTCFCMKPFA-GRPMIECNECHTWIH 44 (68)
T ss_dssp TTCCCSTTCCCCT-TCCEEECTTTCCEEE
T ss_pred CCceEeECCCcCC-CCCEEECCCCCcccc
Confidence 4567999999976 779999999999998
No 19
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.81 E-value=6.1e-06 Score=52.85 Aligned_cols=28 Identities=36% Similarity=0.786 Sum_probs=25.2
Q ss_pred CcceeeeecCCCCCCCceEeCc--ccccccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCE--GCKDWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~--~C~~w~h 164 (164)
.....|+|.++ .++..||||+ .|+.|||
T Consensus 14 ~~~~~CiC~~~-~~~g~MI~CD~~~C~~W~H 43 (78)
T 1wew_A 14 EIKVRCVCGNS-LETDSMIQCEDPRCHVWQH 43 (78)
T ss_dssp CCCCCCSSCCC-CCCSCEEECSSTTTCCEEE
T ss_pred CCCEEeECCCc-CCCCCEEEECCccCCcccc
Confidence 46789999999 5778999999 9999999
No 20
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.76 E-value=5.2e-06 Score=70.16 Aligned_cols=32 Identities=41% Similarity=1.117 Sum_probs=28.7
Q ss_pred cCCCcceeeeecCCCCCCCceEeCcccccccC
Q 031197 133 TPDRVAVYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 133 ~p~~~~~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
.+......|+|.+|.+++..||||+.|+.|||
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH 63 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFH 63 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCEEE
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCcee
Confidence 34566789999999999999999999999999
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.40 E-value=3.8e-05 Score=48.59 Aligned_cols=27 Identities=30% Similarity=0.861 Sum_probs=22.5
Q ss_pred cceee-eecCCCCCCCceEeCcccccccC
Q 031197 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 137 ~~~~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
....| +|.++.+ +..||+|++|..|||
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH 44 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYH 44 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEE
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccc
Confidence 34578 8999975 458999999999999
No 22
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.37 E-value=6.1e-05 Score=46.80 Aligned_cols=28 Identities=36% Similarity=0.826 Sum_probs=22.7
Q ss_pred CcceeeeecCCCCCCCceEeCcc--cccccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEG--CKDWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~--C~~w~h 164 (164)
.....|+|.++.. +..||+|++ |+.|||
T Consensus 8 e~~v~C~C~~~~~-~g~mI~CD~~~C~~W~H 37 (68)
T 2rsd_A 8 EAKVRCICSSTMV-NDSMIQCEDQRCQVWQH 37 (68)
T ss_dssp SCEECCTTCCCSC-CSCEEECSCTTTCEEEE
T ss_pred CCCEEeECCCCcC-CCCEEEECCCCCCCeEc
Confidence 3456899988754 568999995 999999
No 23
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.20 E-value=5.4e-05 Score=45.79 Aligned_cols=27 Identities=26% Similarity=0.822 Sum_probs=22.2
Q ss_pred CcceeeeecCCCCCCCceEeCcc--cc-cccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~--C~-~w~h 164 (164)
.....|+|+++.+ ..||+||+ |. .|||
T Consensus 7 ~e~~yC~C~~~~~--g~mi~CD~~~C~~~wfH 36 (59)
T 3c6w_A 7 NEPTYCLCHQVSY--GEMIGCDNPDCPIEWFH 36 (59)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEE
T ss_pred CCCcEEECCCCCC--CCeeEeeCCCCCCCCEe
Confidence 3457999999975 58999999 77 7999
No 24
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.19 E-value=9.5e-05 Score=49.26 Aligned_cols=25 Identities=28% Similarity=0.822 Sum_probs=21.8
Q ss_pred eeeeecCCCCCCCceEeCcccccccC
Q 031197 139 VYCKCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 139 ~~C~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
..|+|.++.+ +..||+|++|..|||
T Consensus 29 vrCiC~~~~~-~~~mi~Cd~C~~w~H 53 (98)
T 2lv9_A 29 TRCICGFTHD-DGYMICCDKCSVWQH 53 (98)
T ss_dssp CCCTTSCCSC-SSCEEEBTTTCBEEE
T ss_pred EEeECCCccC-CCcEEEcCCCCCcCc
Confidence 4699999865 568999999999998
No 25
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.0001 Score=46.15 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=21.7
Q ss_pred cceeeeecCCCCCCCceEeCcccc---cccC
Q 031197 137 VAVYCKCEMPYNPDDLMVQCEGCK---DWIY 164 (164)
Q Consensus 137 ~~~~C~C~~p~~pd~~~~~C~~C~---~w~h 164 (164)
...+|+|+++. +..||+||+|+ .|||
T Consensus 5 ~~~yC~C~~~~--~g~MI~CD~cdC~~~WfH 33 (70)
T 1x4i_A 5 SSGYCICNQVS--YGEMVGCDNQDCPIEWFH 33 (70)
T ss_dssp CCCCSTTSCCC--CSSEECCSCTTCSCCCEE
T ss_pred CCeEEEcCCCC--CCCEeEeCCCCCCccCCc
Confidence 45799999995 45899999984 9999
No 26
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.14 E-value=9.3e-05 Score=46.43 Aligned_cols=27 Identities=26% Similarity=0.831 Sum_probs=22.8
Q ss_pred CcceeeeecCCCCCCCceEeCcc--cc-cccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~--C~-~w~h 164 (164)
....+|+|+++.+ ..||+||+ |. .|||
T Consensus 14 ~~~~~C~C~~~~~--g~MI~CD~~~C~~~wfH 43 (71)
T 1wen_A 14 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFH 43 (71)
T ss_dssp TSCCCSTTCCCSC--SSEECCSCSSCSCCCEE
T ss_pred CCCCEEECCCCCC--CCEeEeeCCCCCCccEe
Confidence 4567999999975 68999999 77 7999
No 27
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.13 E-value=7.1e-05 Score=45.73 Aligned_cols=27 Identities=26% Similarity=0.828 Sum_probs=21.8
Q ss_pred CcceeeeecCCCCCCCceEeCcc--cc-cccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~--C~-~w~h 164 (164)
....+|+|+++.+ ..||+||+ |. .|||
T Consensus 9 ~e~~yC~C~~~~~--g~MI~CD~c~C~~~WfH 38 (62)
T 2g6q_A 9 NEPTYCLCNQVSY--GEMIGCDNEQCPIEWFH 38 (62)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEE
T ss_pred CCCcEEECCCCCC--CCeeeeeCCCCCcccEe
Confidence 3457999999965 47999999 55 9999
No 28
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.11 E-value=9e-05 Score=48.71 Aligned_cols=27 Identities=26% Similarity=0.831 Sum_probs=22.9
Q ss_pred CcceeeeecCCCCCCCceEeCcc--cc-cccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~--C~-~w~h 164 (164)
....+|+|+++.+ ..||+||+ |. .|||
T Consensus 34 ~e~~yCiC~~~~~--g~MI~CD~~dC~~~WfH 63 (91)
T 1weu_A 34 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFH 63 (91)
T ss_dssp CCCBCSTTCCBCC--SCCCCCSCSSCSCCCCC
T ss_pred CCCcEEECCCCCC--CCEeEecCCCCCCCCEe
Confidence 4557999999975 58999999 76 8999
No 29
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.00 E-value=0.00011 Score=44.50 Aligned_cols=27 Identities=26% Similarity=0.831 Sum_probs=22.0
Q ss_pred CcceeeeecCCCCCCCceEeCcc--cc-cccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEG--CK-DWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~--C~-~w~h 164 (164)
.....|+|+++.+ ..||+|++ |. .|||
T Consensus 8 ~e~~~C~C~~~~~--g~mi~CD~cdC~~~wfH 37 (60)
T 2vnf_A 8 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWFH 37 (60)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEEE
T ss_pred CCCCEEECCCcCC--CCEEEeCCCCCCCceEe
Confidence 3457999999864 68999999 66 8999
No 30
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=96.92 E-value=0.00018 Score=47.13 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=22.8
Q ss_pred CcceeeeecCCCCCCCceEeCcccc---cccC
Q 031197 136 RVAVYCKCEMPYNPDDLMVQCEGCK---DWIY 164 (164)
Q Consensus 136 ~~~~~C~C~~p~~pd~~~~~C~~C~---~w~h 164 (164)
....+|+|++|.+. .||+||+|+ .|||
T Consensus 24 ~~~~yCiC~~~~~g--~MI~CD~c~C~~eWfH 53 (90)
T 2jmi_A 24 QEEVYCFCRNVSYG--PMVACDNPACPFEWFH 53 (90)
T ss_dssp CCSCCSTTTCCCSS--SEECCCSSSCSCSCEE
T ss_pred CCCcEEEeCCCCCC--CEEEecCCCCccccCc
Confidence 45679999998763 699999977 9999
No 31
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.05 E-value=0.0018 Score=54.89 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=17.8
Q ss_pred CCCCCCCceEeCcccccccC
Q 031197 145 MPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 145 ~p~~pd~~~~~C~~C~~w~h 164 (164)
.+.|||..||+||.|+.|||
T Consensus 50 ~~~n~~~~mI~CD~C~~WfH 69 (528)
T 3pur_A 50 HHKKNDFQWIGCDSCQTWYH 69 (528)
T ss_dssp TTTTSTTSEEECTTTCCEEE
T ss_pred cCCCcCCCEEECCCCCcCCC
Confidence 34569999999999999999
No 32
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=95.13 E-value=0.0077 Score=34.78 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=17.8
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.++.++ ..++.|++|.+|||
T Consensus 5 vC~~~~~~-~~ll~Cd~C~~~~H 26 (51)
T 1f62_A 5 VCRKKGED-DKLILCDECNKAFH 26 (51)
T ss_dssp TTCCSSCC-SCCEECTTTCCEEC
T ss_pred CCCCCCCC-CCEEECCCCChhhC
Confidence 56776543 48999999999999
No 33
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=91.39 E-value=0.5 Score=28.16 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=38.4
Q ss_pred EEEEEeeecccccCcccccCCCceeEEeCCeeeeccceEEEeeEEEee
Q 031197 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTF 105 (164)
Q Consensus 58 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~i~~~~I~gkc~V~~~ 105 (164)
|.|.=+-|..|+.-......+..||.....++..++-.|+|++.|++.
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 666667788888654444468999999999999999999999999863
No 34
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=90.95 E-value=0.092 Score=32.51 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=20.0
Q ss_pred eeeecCCCC-CCCceEeCcccccccC
Q 031197 140 YCKCEMPYN-PDDLMVQCEGCKDWIY 164 (164)
Q Consensus 140 ~C~C~~p~~-pd~~~~~C~~C~~w~h 164 (164)
-.+|.+... .+..++.|++|..|||
T Consensus 19 C~vC~~~~s~~~~~ll~CD~C~~~~H 44 (71)
T 2ku3_A 19 CSICMDGESQNSNVILFCDMCNLAVH 44 (71)
T ss_dssp CSSSCCCCCCSSSCEEECSSSCCEEE
T ss_pred CCCCCCCCCCCCCCEEECCCCCCccc
Confidence 338888763 4569999999999998
No 35
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=90.82 E-value=0.1 Score=34.58 Aligned_cols=18 Identities=28% Similarity=0.912 Sum_probs=15.9
Q ss_pred CCCCCCCceEeCcccccc
Q 031197 145 MPYNPDDLMVQCEGCKDW 162 (164)
Q Consensus 145 ~p~~pd~~~~~C~~C~~w 162 (164)
.+..|+..-+||+.|+||
T Consensus 20 ~~~~~~~~WVQCD~C~KW 37 (100)
T 2l7p_A 20 DSYSTESAWVRCDDCFKW 37 (100)
T ss_dssp SCCSSSSEEEECTTTCCE
T ss_pred CCCCCCCeEEeeCCCCcc
Confidence 456788999999999999
No 36
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=90.06 E-value=0.11 Score=31.33 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=19.1
Q ss_pred eecCCCC-CCCceEeCcccccccC
Q 031197 142 KCEMPYN-PDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~-pd~~~~~C~~C~~w~h 164 (164)
+|..... .+..++.|++|..+||
T Consensus 11 vC~~~~~~~~~~ll~Cd~C~~~~H 34 (66)
T 2yt5_A 11 ICQEEYSEAPNEMVICDKCGQGYH 34 (66)
T ss_dssp SSCCCCCBTTBCEEECSSSCCEEE
T ss_pred CCCCCCCCCCCCEEECCCCChHHH
Confidence 7887753 4569999999999998
No 37
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.63 E-value=0.12 Score=33.68 Aligned_cols=24 Identities=33% Similarity=0.776 Sum_probs=19.5
Q ss_pred ee-eecCCCCCCCceEeCcccccccC
Q 031197 140 YC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 140 ~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
.| +|.+..+ ...++.|++|.+|||
T Consensus 18 ~C~vC~~~~~-~~~ll~CD~C~~~~H 42 (92)
T 2e6r_A 18 ICQVCSRGDE-DDKLLFCDGCDDNYH 42 (92)
T ss_dssp CCSSSCCSGG-GGGCEECTTTCCEEC
T ss_pred CCccCCCcCC-CCCEEEcCCCCchhc
Confidence 45 7887754 358999999999999
No 38
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.52 E-value=0.15 Score=32.90 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=20.1
Q ss_pred eeeecCCCC-CCCceEeCcccccccC
Q 031197 140 YCKCEMPYN-PDDLMVQCEGCKDWIY 164 (164)
Q Consensus 140 ~C~C~~p~~-pd~~~~~C~~C~~w~h 164 (164)
-++|.+... .+..++.|++|..|||
T Consensus 28 C~vC~~~~s~~~~~ll~CD~C~~~fH 53 (88)
T 2l43_A 28 CSICMDGESQNSNVILFCDMCNLAVH 53 (88)
T ss_dssp CSSCCSSSSCSEEEEEECSSSCCCCC
T ss_pred CCcCCCCCCCCCCCEEECCCCCchhh
Confidence 348888763 4459999999999999
No 39
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.93 E-value=0.24 Score=29.94 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=17.4
Q ss_pred eee-eecCCCCCCCceEeCcccccccC
Q 031197 139 VYC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 139 ~~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
..| +|.+. ..++.|++|.+|||
T Consensus 9 ~~C~vC~~~----g~ll~CD~C~~~fH 31 (66)
T 1xwh_A 9 DECAVCRDG----GELICCDGCPRAFH 31 (66)
T ss_dssp CSBSSSSCC----SSCEECSSCCCEEC
T ss_pred CCCccCCCC----CCEEEcCCCChhhc
Confidence 345 57764 37999999999999
No 40
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.73 E-value=0.18 Score=30.14 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=19.3
Q ss_pred Ccceee-eecCCCCCCCceEeCcccccccC
Q 031197 136 RVAVYC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 136 ~~~~~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
.....| +|.+. ..++.|+.|.+|||
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH 34 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYH 34 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEE
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhh
Confidence 344566 58774 48999999999998
No 41
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=86.26 E-value=0.24 Score=29.29 Aligned_cols=19 Identities=16% Similarity=0.530 Sum_probs=15.7
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.+. ..++.|++|.+|||
T Consensus 10 vC~~~----g~ll~Cd~C~~~fH 28 (60)
T 2puy_A 10 VCRKS----GQLLMCDTCSRVYH 28 (60)
T ss_dssp TTCCC----SSCEECSSSSCEEC
T ss_pred CCCCC----CcEEEcCCCCcCEE
Confidence 56664 47999999999999
No 42
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.01 E-value=0.28 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.665 Sum_probs=17.3
Q ss_pred eee-eecCCCCCCCceEeCcccccccC
Q 031197 139 VYC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 139 ~~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
..| +|.+. ..++.|+.|.+|||
T Consensus 10 ~~C~vC~~~----g~ll~Cd~C~~~~H 32 (56)
T 2yql_A 10 DFCSVCRKS----GQLLMCDTCSRVYH 32 (56)
T ss_dssp CSCSSSCCS----SCCEECSSSSCEEC
T ss_pred CCCccCCCC----CeEEEcCCCCcceE
Confidence 345 57764 37999999999999
No 43
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.93 E-value=0.43 Score=31.92 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.3
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|..+...+..++.|+.|.++||
T Consensus 66 vC~~~~~~~~~ll~Cd~C~~~yH 88 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDSCDRGFH 88 (112)
T ss_dssp TTCCCCCTTCCCEECTTTCCEEC
T ss_pred cccCcCCCccceEEcCCCCCeee
Confidence 56766666678999999999999
No 44
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.67 E-value=0.47 Score=30.44 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=20.5
Q ss_pred ee-eecCCCCC-CCceEeCcccccccC
Q 031197 140 YC-KCEMPYNP-DDLMVQCEGCKDWIY 164 (164)
Q Consensus 140 ~C-~C~~p~~p-d~~~~~C~~C~~w~h 164 (164)
.| +|.....+ +..++.|+.|...||
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH 44 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYH 44 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEE
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEc
Confidence 45 78887664 568999999999998
No 45
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.81 E-value=0.44 Score=28.93 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.3
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.+. ..++.|+.|.++||
T Consensus 17 vC~~~----~~ll~Cd~C~~~~H 35 (66)
T 2lri_C 17 VCGDG----TDVLRCTHCAAAFH 35 (66)
T ss_dssp TTSCC----TTCEECSSSCCEEC
T ss_pred CCCCC----CeEEECCCCCCcee
Confidence 66653 35899999999999
No 46
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.58 E-value=0.55 Score=28.76 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=16.1
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.+..+ ...++.|++|.++||
T Consensus 23 ~C~~~~~-~~~ll~CD~C~~~yH 44 (70)
T 3asl_A 23 LCGGRQD-PDKQLMCDECDMAFH 44 (70)
T ss_dssp TTCCCSC-GGGEEECTTTCCEEE
T ss_pred CCCCcCC-CCCEEEcCCCCCcee
Confidence 3444432 358999999999999
No 47
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=81.53 E-value=0.4 Score=30.06 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=16.2
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.+..++ ..++.|++|.++||
T Consensus 31 vC~~~~d~-~~ll~CD~C~~~yH 52 (77)
T 3shb_A 31 LCGGRQDP-DKQLMCDECDMAFH 52 (77)
T ss_dssp TTCCCSCG-GGEEECTTTCCEEE
T ss_pred ccCCCCCC-cceeEeCCCCCccC
Confidence 34444433 47999999999998
No 48
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=81.03 E-value=2.8 Score=25.41 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=38.6
Q ss_pred EEEEEeeecccccCcccccCCCceeEEeCCeeeeccceEEEeeEEEee
Q 031197 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTF 105 (164)
Q Consensus 58 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~i~~~~I~gkc~V~~~ 105 (164)
|.|.=+-|..||.-......+..||.+...++.-++-.|+||+.|+..
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t~ 64 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 64 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEee
Confidence 666667788887654443468999999999999999999999999873
No 49
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=80.89 E-value=2.8 Score=25.82 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=38.0
Q ss_pred EEEEEeeecccccCcccccCCCceeEEeCCeeeeccceEEEeeEEEee
Q 031197 58 VRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHTF 105 (164)
Q Consensus 58 v~v~Wfyrp~e~~~~~~~~~~~~Elf~s~~~d~i~~~~I~gkc~V~~~ 105 (164)
|.|.=+-|..|+.-......+..||.....++..++-.|+|++.|++.
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t~ 68 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTA 68 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEec
Confidence 566666777777544333368999999999999999999999999874
No 50
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=79.84 E-value=1.9 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=24.7
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
.++.|+.|+++-.| ..+|.|.|.++...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecC
Confidence 57899999999887 79999999999765
No 51
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=79.64 E-value=1.4 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.9
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..|.+|+.|+++-.| ..+|.|.|.++...
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 579999999999887 79999999999865
No 52
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.13 E-value=0.7 Score=30.65 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=17.7
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.++.++ ..++.|+.|.++||
T Consensus 59 ~C~~~~~~-~~ll~Cd~C~~~yH 80 (111)
T 2ysm_A 59 NCKQSGED-SKMLVCDTCDKGYH 80 (111)
T ss_dssp TTCCCSCC-TTEEECSSSCCEEE
T ss_pred ccCccCCC-CCeeECCCCCcHHh
Confidence 46676543 57999999999999
No 53
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=79.03 E-value=1 Score=27.65 Aligned_cols=17 Identities=29% Similarity=0.796 Sum_probs=14.3
Q ss_pred CCCCCCceEeCc--ccccc
Q 031197 146 PYNPDDLMVQCE--GCKDW 162 (164)
Q Consensus 146 p~~pd~~~~~C~--~C~~w 162 (164)
+..+...-|||+ .|.||
T Consensus 11 ~~~~~~~WVQCd~p~C~KW 29 (69)
T 2e61_A 11 GFGQCLVWVQCSFPNCGKW 29 (69)
T ss_dssp SCCCCCCEEECSSTTTCCE
T ss_pred CCCCCCeEEEeCccccCcc
Confidence 445677999999 99999
No 54
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.84 E-value=0.82 Score=28.56 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=16.7
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.+.. ....++.|++|.++||
T Consensus 31 vC~~~~-~~~~ll~CD~C~~~yH 52 (77)
T 2e6s_A 31 VCGGKH-EPNMQLLCDECNVAYH 52 (77)
T ss_dssp SSCCCC-CSTTEEECSSSCCEEE
T ss_pred CcCCcC-CCCCEEEcCCCCcccc
Confidence 455543 3458999999999998
No 55
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=77.24 E-value=2.9 Score=26.42 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=34.5
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEee
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYY 64 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfy 64 (164)
.-++||.+.|.+.........|.|+++.-. +|..-..|+|+-
T Consensus 5 ~A~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~PPY~VRw~d 46 (83)
T 2a7y_A 5 HAKVGDYLVVKGTTTERHDQHAEIIEVRSA-DGSPPYVVRWLV 46 (83)
T ss_dssp CCCTTEEEEESCTTTSCCEEEEEEEECSCS-SSCSCEEEEETT
T ss_pred CccCCCEEEEecCcCCCCCcEEEEEEEECC-CCCCCEEEEecC
Confidence 347899999998876688999999999865 577778899953
No 56
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.15 E-value=1.1 Score=29.93 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=17.1
Q ss_pred eecCCCCCCCceEeCcccccccC
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
+|.+.. .+..++.|++|.++||
T Consensus 63 ~C~~~~-~~~~ll~Cd~C~~~yH 84 (114)
T 2kwj_A 63 LCGTSE-NDDQLLFCDDCDRGYH 84 (114)
T ss_dssp TTTCCT-TTTTEEECSSSCCEEE
T ss_pred cccccC-CCCceEEcCCCCcccc
Confidence 455653 3468999999999999
No 57
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=72.62 E-value=5.7 Score=23.99 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=25.0
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..+++||.|+..=.| ...|.|.|.+|...
T Consensus 12 ~~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 12 CKFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CCSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 368999999998655 68999999999875
No 58
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=72.61 E-value=0.42 Score=32.01 Aligned_cols=15 Identities=13% Similarity=0.563 Sum_probs=13.2
Q ss_pred CCceEeCcccccccC
Q 031197 150 DDLMVQCEGCKDWIY 164 (164)
Q Consensus 150 d~~~~~C~~C~~w~h 164 (164)
+..+++|+.|..|||
T Consensus 72 ~~~m~~C~~C~~~~H 86 (117)
T 4bbq_A 72 EKKLMECCICNEIVH 86 (117)
T ss_dssp GGSCEEETTTCCEEC
T ss_pred CcceEEeeecCCeEE
Confidence 346999999999999
No 59
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=72.10 E-value=1 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.590 Sum_probs=16.9
Q ss_pred eee-eecCCCCCCCceEeCcccccccC
Q 031197 139 VYC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 139 ~~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
..| +|.+. ..++.|++|.++||
T Consensus 10 ~~C~vC~~~----g~ll~Cd~C~~~fH 32 (61)
T 1mm2_A 10 EFCRVCKDG----GELLCCDTCPSSYH 32 (61)
T ss_dssp SSCTTTCCC----SSCBCCSSSCCCBC
T ss_pred CcCCCCCCC----CCEEEcCCCCHHHc
Confidence 345 46653 37999999999999
No 60
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=70.63 E-value=4.9 Score=24.45 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=22.3
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEE
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKI 48 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i 48 (164)
..|.+|+.|+++-.| ..+|.|.|++.
T Consensus 14 ~~~~~geDVL~rw~D--G~fYLGtIVd~ 39 (69)
T 2xk0_A 14 VTYALQEDVFIKCND--GRFYLGTIIDQ 39 (69)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEEEEE
T ss_pred cccccCCeEEEEecC--CCEEEEEEEec
Confidence 478999999999776 89999999654
No 61
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=70.12 E-value=3.8 Score=29.03 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=33.1
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEcEEeeccC---CcEEEEEEEeeec
Q 031197 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADHR---NNVKVRVRWYYRP 66 (164)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~---g~~~v~v~Wfyrp 66 (164)
+..+.+||.|..+-.. -+.|-|+|........ ..-.+.|+||=..
T Consensus 14 g~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~ 61 (154)
T 3llr_A 14 GRGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDG 61 (154)
T ss_dssp SCCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCTTEEEEEETTTC
T ss_pred CCCCccCCEEEEecCC--CCCCCEEEecccccccccCCCCEEEEEEeCCC
Confidence 3589999999999876 7999999999764321 1235677777544
No 62
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=68.77 E-value=3.9 Score=26.33 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=28.9
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeecc--CCcEEEEEEEe
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH--RNNVKVRVRWY 63 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~--~g~~~v~v~Wf 63 (164)
..+++||.|..+-.+ -+.|-|+|.++-... .....+.|+||
T Consensus 4 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~k~~~~~~~V~FF 46 (94)
T 3qby_A 4 HAFKPGDLVFAKMKG--YPHWPARIDDIADGAVKPPPNKYPIFFF 46 (94)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEECCCCTTSBCCCTTCEEEEET
T ss_pred CcCccCCEEEEecCC--CCCCCEEEeecccccccCCCCEEEEEEE
Confidence 368999999999976 789999999864221 11234566665
No 63
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.33 E-value=11 Score=22.70 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.5
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
-.+.+|+.|+.+=.| ..+|.|.|.++...
T Consensus 8 ~~f~eGqdVLarWsD--GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 8 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCTTCEEEEECTT--SSEEEEEEEEEETT
T ss_pred cccccCCEEEEEecC--CcEEEeEEEEEecC
Confidence 578999999998877 79999999999864
No 64
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=67.80 E-value=3.9 Score=28.66 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=29.0
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeecc--CCcEEEEEEEee
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH--RNNVKVRVRWYY 64 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~--~g~~~v~v~Wfy 64 (164)
..|++||.|..+-.+ -+.|-|+|...-... .....+.|+||-
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~~~~~~~~~V~FfG 64 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPDGAVKPPTNKLPIFFFG 64 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC---CCCCTTCEEEEETT
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchhhccCCCCCEEEEEecC
Confidence 468999999999886 789999998764432 112346666664
No 65
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=66.68 E-value=6.7 Score=26.80 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=32.2
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEcEEeecc-----CC-cEEEEEEEeee
Q 031197 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-----RN-NVKVRVRWYYR 65 (164)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~-----~g-~~~v~v~Wfyr 65 (164)
+..+.+||.|..+-.+ -+.|-|+|...-... .+ ...+.|+||-.
T Consensus 20 ~~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 20 SSDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp SCCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred CCCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 3589999999999886 789999998864321 12 24677777753
No 66
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=65.89 E-value=5.8 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=24.1
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEe
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~ 49 (164)
..|++||.|+-+=.+ +..+|-|+|.+|-
T Consensus 8 ~~~~vgd~VmaRW~G-d~~yYparI~Si~ 35 (66)
T 2l8d_A 8 RKYADGEVVMGRWPG-SVLYYEVQVTSYD 35 (66)
T ss_dssp SSSCSSCEEEEECTT-SSCEEEEEEEEEE
T ss_pred eEeecCCEEEEEcCC-CccceEEEEEEec
Confidence 478999999998644 5889999999998
No 67
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=65.79 E-value=2.4 Score=32.05 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=29.7
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEeecc------CCcEEEEEEEeeecc
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADH------RNNVKVRVRWYYRPE 67 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~------~g~~~v~v~Wfyrp~ 67 (164)
.|++||.|-.+..+ ..--+=|+|+.+.+.. ...+..+|.|=-.|+
T Consensus 2 ~yki~~~vd~~d~~-~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~ 52 (226)
T 3ask_A 2 LYKVNEYVDARDTN-MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPE 52 (226)
T ss_dssp CSCTTCEEEEECTT-TCCEEEEEEEEEEECC------CCCEEEEEEETTCGG
T ss_pred ccccCceEEeeecC-CCceeEEEEEEEeccccccCCCCCceEEEeecccCcc
Confidence 57899999998866 3455678888888743 122555666544444
No 68
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.00 E-value=5.1 Score=23.43 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=31.3
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeee
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYR 65 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyr 65 (164)
..+.+||.|.|..++ -.-..|+|+++..+ .+.+.+.-|-|
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~e---~v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDGN---KITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBTT---EEEEEECCSSC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeCC---EEEEEEEecCC
Confidence 578999999999997 67899999999742 56666655555
No 69
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=62.04 E-value=3.2 Score=27.60 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=30.2
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEcEEeecc--CCcEEEEEEEe
Q 031197 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADH--RNNVKVRVRWY 63 (164)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~--~g~~~v~v~Wf 63 (164)
+..+++||.|..+-.+ -+.|-|+|.++-+.. .....+.|+||
T Consensus 17 ~~~~~~GdlVwaK~kG--yP~WPa~V~~~p~~~~k~~~~~~~V~FF 60 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMKG--YPHWPARIDEMPEAAVKSTANKYQVFFF 60 (110)
T ss_dssp SSSCCTTCEEEEEETT--EEEEEEEEECCCSSSSCCCSSCEEEEET
T ss_pred cCCCCCCCEEEEEeCC--CCCCCEEEecccHhhcCCCCCEEEEEEe
Confidence 4588999999999876 789999998754321 12245666666
No 70
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=61.84 E-value=3.4 Score=27.20 Aligned_cols=30 Identities=10% Similarity=0.085 Sum_probs=25.2
Q ss_pred CCCeEEccCCEEEEccCCCCCCCeEEEEcEEe
Q 031197 18 GTNKVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (164)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~ 49 (164)
+.|..+++||.|..+-.+ -+.|-|+|.+..
T Consensus 4 ~~g~~~~~GdlVwaK~~g--~p~WPa~V~~~~ 33 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGN--YRWWPAEICNPR 33 (110)
T ss_dssp SCCCSCCSSEEEEEECSS--SCEEEEEECCTT
T ss_pred CCCCCCCCCCEEEEEeCC--CCCCceeeCChh
Confidence 445688999999999886 789999998773
No 71
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.79 E-value=6.4 Score=23.44 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=24.9
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
-.+.+||.|+.+=.| ..+|.|.|.++..+
T Consensus 6 ~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred cceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 578999999999666 68999999999754
No 72
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=61.10 E-value=2.9 Score=27.81 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.8
Q ss_pred CceEeCc--ccccccC
Q 031197 151 DLMVQCE--GCKDWIY 164 (164)
Q Consensus 151 ~~~~~C~--~C~~w~h 164 (164)
..+|.|| +|.+|||
T Consensus 25 G~ll~CD~~~Cp~~fH 40 (107)
T 4gne_A 25 GELVMCDKKDCPKAYH 40 (107)
T ss_dssp SEEEECCSTTCCCEEC
T ss_pred CcEeEECCCCCCcccc
Confidence 4799999 8999999
No 73
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=60.56 E-value=8.6 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=24.3
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEe
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~ 49 (164)
..|++||.|+-+=.+ +..+|-|+|.+|-
T Consensus 11 ~~f~vgd~VmaRW~G-d~~yYparItSit 38 (68)
T 2dig_A 11 RKFADGEVVRGRWPG-SSLYYEVEILSHD 38 (68)
T ss_dssp CSSCSSCEEEEECTT-TCCEEEEEEEEEE
T ss_pred eEeecCCEEEEEccC-CccceEEEEEEec
Confidence 478999999998654 5899999999998
No 74
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=59.48 E-value=4.9 Score=28.13 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=31.9
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEcEEeeccC---CcEEEEEEEee
Q 031197 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADHR---NNVKVRVRWYY 64 (164)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~---g~~~v~v~Wfy 64 (164)
+..+++||.|..+-.+ -+.|-|+|.+...... ....+.|+||-
T Consensus 9 ~~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG 54 (147)
T 1khc_A 9 DKEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFG 54 (147)
T ss_dssp SSSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETT
T ss_pred CccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEec
Confidence 4589999999999876 7899999987654321 12367788775
No 75
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=56.67 E-value=7.5 Score=25.60 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=30.7
Q ss_pred CeEEccCCEEEEccCCCCCCCeEEEEcEEeecc-------CCcEEEEEEEee
Q 031197 20 NKVVRPGDCVLMRPADSDKPPYVARVEKIEADH-------RNNVKVRVRWYY 64 (164)
Q Consensus 20 ~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~-------~g~~~v~v~Wfy 64 (164)
+..+++||.|..+-.+ -+.|-|+|..-..-+ .+...+.|+.|-
T Consensus 3 ~~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 3 DDRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp SCCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CCcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 3578999999999886 789999997643221 123567777664
No 76
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=56.56 E-value=12 Score=21.48 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=33.1
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecc
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPE 67 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~ 67 (164)
..+.+||.|.|.++. -.-+.|.|.++... .+...+.+..|-|.-
T Consensus 3 ~~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~~-k~~v~V~v~~~Gr~t 46 (58)
T 1nz9_A 3 VAFREGDQVRVVSGP--FADFTGTVTEINPE-RGKVKVMVTIFGRET 46 (58)
T ss_dssp CSCCTTCEEEECSGG--GTTCEEEEEEEETT-TTEEEEEEESSSSEE
T ss_pred cccCCCCEEEEeecC--CCCcEEEEEEEcCC-CCEEEEEEEeCCCEE
Confidence 357899999999986 56788999999642 455777777666554
No 77
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=54.83 E-value=12 Score=22.58 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=28.1
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEe
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWY 63 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wf 63 (164)
.+++||-|+-+=+| ..+|-|+|.+|-.+ ....|..+
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~----~~Y~V~F~ 41 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD----GTYTVKFY 41 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT----SEEEEEET
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC----CeEEEEEe
Confidence 58999999999854 89999999999764 23556543
No 78
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=51.97 E-value=19 Score=23.97 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=14.7
Q ss_pred CCCeEEccCCEEEEccCCC
Q 031197 18 GTNKVVRPGDCVLMRPADS 36 (164)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~ 36 (164)
|...+++.||++++.++.+
T Consensus 86 g~~~~l~~GD~~~ip~g~~ 104 (123)
T 3bcw_A 86 GTVHAVKAGDAFIMPEGYT 104 (123)
T ss_dssp CCEEEEETTCEEEECTTCC
T ss_pred CeEEEECCCCEEEECCCCe
Confidence 3336789999999998863
No 79
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=51.09 E-value=5.1 Score=26.25 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=10.2
Q ss_pred CceEeCcccccc
Q 031197 151 DLMVQCEGCKDW 162 (164)
Q Consensus 151 ~~~~~C~~C~~w 162 (164)
--++||++|++|
T Consensus 36 vViv~C~gC~n~ 47 (100)
T 2e2z_A 36 TVLISCPHCKVR 47 (100)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEEEcCCCccc
Confidence 378999999986
No 80
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=50.28 E-value=17 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.4
Q ss_pred EEEc-CCCeEEccCCEEEEccCC
Q 031197 14 YNIK-GTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 14 ~~i~-g~~~~~~vGD~V~v~~~~ 35 (164)
+.++ |....++.||++++.++.
T Consensus 62 ~~i~~g~~~~l~~GD~i~ip~g~ 84 (101)
T 1o5u_A 62 VTTEDGKKYVIEKGDLVTFPKGL 84 (101)
T ss_dssp EEETTCCEEEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCCEEEECCCC
Confidence 3455 555778999999998876
No 81
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=48.91 E-value=35 Score=22.22 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=28.7
Q ss_pred EEcCCCeEEccCCEEEEccCCC--CCCCeEEEEcEEeecc
Q 031197 15 NIKGTNKVVRPGDCVLMRPADS--DKPPYVARVEKIEADH 52 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~~--~~~~~ig~I~~i~~~~ 52 (164)
.+++....|.+|+-|++.-+++ ....|=|+|+++....
T Consensus 12 ~~~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 12 ELRDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp -CCCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred hhccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 4566567899999999988632 2468999999998753
No 82
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=48.28 E-value=28 Score=23.76 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=26.9
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeecc-CCcE
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH-RNNV 56 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~-~g~~ 56 (164)
..|.+|+.|++.-.+ ...|-|+|+++.... +|..
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~~~~~~~ 45 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVNDQEGRE 45 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEETTTTEE
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEeccCCCce
Confidence 468999999999864 579999999998753 3443
No 83
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=43.38 E-value=23 Score=20.73 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=23.3
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
..+++||.++.+=.+ +...|=|+|+++..
T Consensus 7 ~~~~vGd~c~A~~s~-Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSE-DGQCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTT-TSSEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 478999999988543 36789999999975
No 84
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.15 E-value=3.8 Score=26.79 Aligned_cols=26 Identities=23% Similarity=0.775 Sum_probs=18.9
Q ss_pred ceee-eecCCCCCCCceEeCccccccc
Q 031197 138 AVYC-KCEMPYNPDDLMVQCEGCKDWI 163 (164)
Q Consensus 138 ~~~C-~C~~p~~pd~~~~~C~~C~~w~ 163 (164)
...| .|+++..++..+..|+.|++-|
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~f 58 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEFI 58 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCEE
T ss_pred cccCccCCCcceecCCEEECccccchh
Confidence 3456 7888877777788888887643
No 85
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=42.46 E-value=22 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=16.0
Q ss_pred EEcCCC--eEEccCCEEEEccCC
Q 031197 15 NIKGTN--KVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~--~~~~vGD~V~v~~~~ 35 (164)
.+.+.. ..++.||+++|.++.
T Consensus 67 ~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 67 ECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EETTCSSCEEECTTEEEEECTTC
T ss_pred EECCEEEEEEECCCCEEEECCCC
Confidence 455555 678999999998875
No 86
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=41.41 E-value=8.8 Score=24.58 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.6
Q ss_pred ceEeCccccccc
Q 031197 152 LMVQCEGCKDWI 163 (164)
Q Consensus 152 ~~~~C~~C~~w~ 163 (164)
.+++|++|.-|+
T Consensus 44 ~iv~C~sCSL~I 55 (89)
T 2jr7_A 44 DVATCPSCSLII 55 (89)
T ss_dssp CEEECTTTCCEE
T ss_pred EEEECCCCccEE
Confidence 589999999885
No 87
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=40.40 E-value=9.5 Score=24.08 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=11.1
Q ss_pred CceEeCccccccc
Q 031197 151 DLMVQCEGCKDWI 163 (164)
Q Consensus 151 ~~~~~C~~C~~w~ 163 (164)
..+++|++|.-|+
T Consensus 43 e~iv~C~sCSL~I 55 (83)
T 1yop_A 43 EKVAVCPSCSLMI 55 (83)
T ss_dssp CCEEECSSSCCEE
T ss_pred CEEEECCCCccEE
Confidence 3699999999885
No 88
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=39.53 E-value=22 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=16.1
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.++|...+++.||+|+|.++.
T Consensus 73 ~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 73 STDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 445555778999999998886
No 89
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=39.26 E-value=65 Score=20.96 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=24.0
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..+.+|+.|++..+ ...|-|+|+++...
T Consensus 21 ~~f~vGekVl~~~~---~~~YeAkIl~v~~~ 48 (102)
T 2f5k_A 21 PKFQEGERVLCFHG---PLLYEAKCVKVAIK 48 (102)
T ss_dssp CSCCTTCEEEEESS---SSEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEC---CEEEEEEEEEEEEc
Confidence 46899999999874 57999999999874
No 90
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=38.36 E-value=36 Score=22.94 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=25.1
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..++.||.|.|.++. +.=-.|+|.++...
T Consensus 41 ~~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k 69 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGD--FAGEEGEVINVDLD 69 (120)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEETT
T ss_pred ccccCCCEEEEEecC--CCCCEEEEEEEECC
Confidence 678999999999987 56689999999864
No 91
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=37.54 E-value=31 Score=23.73 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=33.2
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRP 66 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp 66 (164)
..+.+||.|.|.++. -.-..|+|.++..+ .+...+.+.-|-|+
T Consensus 90 ~~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~-k~~v~V~v~~~gr~ 132 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP--FKGQKAKVVKIDES-KDEVVVQFIDAIVP 132 (152)
T ss_dssp TTCCTTCEEEECSST--TTTCEEEEEEEETT-TTEEEEEESSCSSC
T ss_pred ccCCCCCEEEEeeec--CCCCEEEEEEEeCC-CCEEEEEEEeccee
Confidence 468899999999986 66788999999754 34567777777654
No 92
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=37.32 E-value=11 Score=26.21 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=17.6
Q ss_pred cceeeeecCCCC--CC-C---ceEeCccccccc
Q 031197 137 VAVYCKCEMPYN--PD-D---LMVQCEGCKDWI 163 (164)
Q Consensus 137 ~~~~C~C~~p~~--pd-~---~~~~C~~C~~w~ 163 (164)
+...|.|..-+. .+ + ..+.|++|..|+
T Consensus 111 f~~~CrCG~~f~i~~~~l~~~~~v~C~sCSl~~ 143 (155)
T 2l6l_A 111 FYLSCRCGGKYSVSKDEAEEVSLISCDTCSLII 143 (155)
T ss_dssp EEEECSSSCEEEEETTHHHHCCEEECSSSSCEE
T ss_pred EEEcCCCCCeEEecHHHhCCCCEEECCCCceEE
Confidence 445677764333 11 1 489999999997
No 93
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=37.20 E-value=11 Score=23.65 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=17.3
Q ss_pred eecCCCCCCCceEeCccccccc
Q 031197 142 KCEMPYNPDDLMVQCEGCKDWI 163 (164)
Q Consensus 142 ~C~~p~~pd~~~~~C~~C~~w~ 163 (164)
.|+++..++..+.+|+.|++-|
T Consensus 7 ~C~~~l~~~~~~~~C~~C~~~~ 28 (81)
T 2jrp_A 7 VCHHALERNGDTAHCETCAKDF 28 (81)
T ss_dssp SSCSCCEECSSEEECTTTCCEE
T ss_pred CCCCccccCCCceECccccccC
Confidence 6888888888888898887643
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.14 E-value=13 Score=23.72 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=16.2
Q ss_pred ee-eecCCCCCCCceEeCcccccccC
Q 031197 140 YC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 140 ~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
.| +|.+.. .++.|+.|.+.||
T Consensus 27 ~C~vC~~~g----~LL~CD~C~~~fH 48 (88)
T 1fp0_A 27 ICRVCQKPG----DLVMCNQCEFCFH 48 (88)
T ss_dssp CCSSSCSSS----CCEECTTSSCEEC
T ss_pred cCcCcCCCC----CEEECCCCCCcee
Confidence 44 666652 5899999999998
No 95
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=36.89 E-value=23 Score=24.68 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=26.6
Q ss_pred EEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecccccC
Q 031197 15 NIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIG 71 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~ 71 (164)
+++|...+++.||+++|.++-+ -- |... ..+++.|...|...+.
T Consensus 98 ~i~g~~~~l~~GD~i~iP~G~~--h~--------~~n~---~~a~~l~V~~P~~~~~ 141 (151)
T 4axo_A 98 IIDGRKVSASSGELIFIPKGSK--IQ--------FSVP---DYARFIYVTYPADWAS 141 (151)
T ss_dssp EETTEEEEEETTCEEEECTTCE--EE--------EEEE---EEEEEEEEEECSCC--
T ss_pred EECCEEEEEcCCCEEEECCCCE--EE--------EEeC---CCEEEEEEECCCCccc
Confidence 4566557789999999998752 11 2221 2467777777765543
No 96
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.47 E-value=43 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=24.6
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..++.||.|.|.++. +.=-.|+|.++...
T Consensus 44 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k 72 (121)
T 3j21_U 44 LPVRVGDKVRIMRGD--YKGHEGKVVEVDLK 72 (121)
T ss_dssp EECCSSSEEEECSSS--CSSEEEEEEEEETT
T ss_pred cccccCCEEEEeecC--CCCcEeEEEEEEec
Confidence 578999999999997 56667999999864
No 97
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=36.32 E-value=60 Score=18.42 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=21.6
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
.+++||.++..=.+ +...|=|+|.++..
T Consensus 3 ~~~~G~~c~A~~s~-Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE-DGCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTT-TSCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECC-CCCEEEEEEEEEcC
Confidence 57899998887543 26788999999953
No 98
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=36.25 E-value=12 Score=23.61 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=10.7
Q ss_pred ceEeCccccccc
Q 031197 152 LMVQCEGCKDWI 163 (164)
Q Consensus 152 ~~~~C~~C~~w~ 163 (164)
.+++|++|..|+
T Consensus 51 ~iv~C~sCSL~I 62 (83)
T 1wge_A 51 DVATCPSCSLII 62 (83)
T ss_dssp CEEECTTTCCEE
T ss_pred EEEECCCCceEE
Confidence 589999999885
No 99
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=35.54 E-value=77 Score=20.93 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.2
Q ss_pred CCeEEccCCEEEEccCCC--CCCCeEEEEcEEeecc
Q 031197 19 TNKVVRPGDCVLMRPADS--DKPPYVARVEKIEADH 52 (164)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~--~~~~~ig~I~~i~~~~ 52 (164)
....|.+|+-|++..+++ ....|-|+|+++....
T Consensus 16 ~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~ 51 (110)
T 3m9p_A 16 MKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp --CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred CCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEecc
Confidence 335799999999987642 1357899999998754
No 100
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=35.30 E-value=26 Score=23.56 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=16.8
Q ss_pred EEEcCCCeEEccCCEEEEccCC
Q 031197 14 YNIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++++|...+++.||++++.++.
T Consensus 88 l~~~g~~~~l~~GD~i~~p~g~ 109 (133)
T 2pyt_A 88 VRHEGETMIAKAGDVMFIPKGS 109 (133)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEECCCcEEEECCCC
Confidence 3455555778999999999886
No 101
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=35.16 E-value=36 Score=21.46 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=28.1
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEE
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRW 62 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~W 62 (164)
..+++||-|+-+=+| ...|-|+|.+|-.+ + ...|..
T Consensus 20 ~~f~vGd~VlArW~D--~~yYPAkI~sV~~~--~--~YtV~F 55 (85)
T 3qii_A 20 SEFQINEQVLACWSD--CRFYPAKVTAVNKD--G--TYTVKF 55 (85)
T ss_dssp -CCCTTCEEEEECTT--SCEEEEEEEEECTT--S--EEEEEE
T ss_pred cccccCCEEEEEeCC--CCEeeEEEEEECCC--C--eEEEEE
Confidence 578999999998854 78999999999765 2 355664
No 102
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=34.47 E-value=33 Score=21.65 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=16.2
Q ss_pred EEcCCCeEEccCCEEEEccCCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPADS 36 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
.+.+....++.||++++.++.+
T Consensus 72 ~i~~~~~~l~~Gd~i~i~~~~~ 93 (114)
T 2ozj_A 72 TFDDQKIDLVPEDVLMVPAHKI 93 (114)
T ss_dssp EETTEEEEECTTCEEEECTTCC
T ss_pred EECCEEEEecCCCEEEECCCCc
Confidence 4555556788999999988863
No 103
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=34.18 E-value=91 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=24.1
Q ss_pred eEEccCCEEEEccCCCC--CCCeEEEEcEEeecc
Q 031197 21 KVVRPGDCVLMRPADSD--KPPYVARVEKIEADH 52 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~--~~~~ig~I~~i~~~~ 52 (164)
..|.+|+-|+..-.++. ...|=|+|+++....
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~ 51 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEecc
Confidence 46899999999765532 345889999997654
No 104
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=33.64 E-value=51 Score=20.99 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=24.1
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeecc
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~ 52 (164)
..+.+|+.|++..+ ...+-|+|+++....
T Consensus 22 ~~~~vG~kv~v~~~---~~~y~AkIl~ir~~~ 50 (92)
T 2ro0_A 22 DDIIIKCQCWVQKN---DEERLAEILSINTRK 50 (92)
T ss_dssp TSCCTTCEEEEEET---TEEEEEEEEEEECSS
T ss_pred ccccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 36899999999963 578999999998753
No 105
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=33.36 E-value=54 Score=21.02 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=24.1
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeecc
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~ 52 (164)
..+.+|+.|++..+ ...+-|+|+++....
T Consensus 24 ~~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 24 DDIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GGCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred ccccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 46899999999963 579999999998753
No 106
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=33.24 E-value=36 Score=22.85 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=23.6
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
..+++||.|+.+..+ ..+|=|+|.++-.
T Consensus 4 ~~v~vGq~V~akh~n--gryy~~~V~~~~~ 31 (118)
T 2qqr_A 4 QSITAGQKVISKHKN--GRFYQCEVVRLTT 31 (118)
T ss_dssp SCCCTTCEEEEECTT--SSEEEEEEEEEEE
T ss_pred ceeccCCEEEEECCC--CCEEeEEEEEEee
Confidence 368999999988876 7899999999843
No 107
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=32.92 E-value=43 Score=22.15 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.8
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeecc
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEADH 52 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~ 52 (164)
..++.||.|.|.++. +.=-.|+|.++....
T Consensus 5 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGK--YKGRVGKVKEVLPKK 34 (110)
T ss_dssp CSCCTTSEEEECSST--TTTCEEEEEEEEGGG
T ss_pred cccCCCCEEEEeEcC--CCCeEeEEEEEECCC
Confidence 468899999999987 566679999998753
No 108
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=31.25 E-value=36 Score=20.86 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=23.9
Q ss_pred eEEccCCEEEEccCC-CCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPAD-SDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~-~~~~~~ig~I~~i~~~ 51 (164)
..+.+|+.|++..++ .....+-|+|+++...
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~ 35 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEID 35 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc
Confidence 368899999998763 1246899999998764
No 109
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.03 E-value=44 Score=20.32 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=23.7
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
..+++||.|+-.=.| ...|-|+|.++-.
T Consensus 8 ~~~kvGd~clA~wsD--g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 8 FDFKAGEEVLARWTD--CRYYPAKIEAINK 35 (74)
T ss_dssp CCCCTTCEEEEECSS--SSEEEEEEEEEST
T ss_pred CCCCCCCEEEEECCC--CCEEEEEEEEECC
Confidence 478999999998665 7899999999964
No 110
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=30.95 E-value=20 Score=22.60 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred EEEcCCCeEEccCCEEEEccCCC---CCCCeEEEEcEE
Q 031197 14 YNIKGTNKVVRPGDCVLMRPADS---DKPPYVARVEKI 48 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~---~~~~~ig~I~~i 48 (164)
|+++..+..|++||.+.+..=+. ......++|..|
T Consensus 29 ~EiR~nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i 66 (83)
T 3iuw_A 29 FEIRKNDRNFQVGDILILEEYMNGMYLDDECEAEVIYI 66 (83)
T ss_dssp EEEEECCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEecccCCCCCCEEEEEEccCCCccCcEEEEEEEEE
Confidence 44555556799999998754320 123344556666
No 111
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=30.55 E-value=33 Score=22.83 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=14.9
Q ss_pred EccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 23 VRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
+.+||.|.|...+ -..--|.|+.+..
T Consensus 71 i~~GD~V~ve~~~--~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 71 VNPGDIVLVSLRD--FQDSKGDIILKYT 96 (117)
T ss_dssp CCTTCEEEEEECT--TCTTEEEEEEECC
T ss_pred CCCCCEEEEEEEc--CCCCeEEEEEEec
Confidence 4478887777653 1123466666654
No 112
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=29.04 E-value=62 Score=21.99 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=23.9
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..++.||.|.|.++. +.=-.|+|..++..
T Consensus 48 ~~IkkgD~V~Vi~Gk--dKGk~GkV~~V~~k 76 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGS--KKGQEGKISSVYRL 76 (127)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEEGG
T ss_pred ccccCCCEEEEeecC--CCCccceEEEEECC
Confidence 578999999999997 44446999999865
No 113
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=28.72 E-value=44 Score=20.80 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=16.0
Q ss_pred EEEcC-CCeEEccCCEEEEccCC
Q 031197 14 YNIKG-TNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 14 ~~i~g-~~~~~~vGD~V~v~~~~ 35 (164)
+.+++ ....++.||.+++.++.
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~~~ 83 (107)
T 2i45_A 61 VDFADGGSMTIREGEMAVVPKSV 83 (107)
T ss_dssp EEETTSCEEEECTTEEEEECTTC
T ss_pred EEECCCcEEEECCCCEEEECCCC
Confidence 34555 55778888998888876
No 114
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=28.53 E-value=45 Score=20.09 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=12.7
Q ss_pred cCCCeEEccCCEEEEccCC
Q 031197 17 KGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 17 ~g~~~~~~vGD~V~v~~~~ 35 (164)
.+....++.||.+++.++.
T Consensus 65 ~~~~~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 65 GEEEALLAPGMAAFAPAGA 83 (105)
T ss_dssp TTEEEEECTTCEEEECTTS
T ss_pred CCEEEEeCCCCEEEECCCC
Confidence 3333567788888887765
No 115
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=28.23 E-value=39 Score=23.92 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=12.4
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++.+...++..||+++|.++.
T Consensus 124 tl~g~~~~L~~Gds~~iP~g~ 144 (166)
T 2vpv_A 124 TVCKNKFLSVKGSTFQIPAFN 144 (166)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEEcCCCEEEECCCC
Confidence 444444556677777776654
No 116
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=27.73 E-value=60 Score=20.42 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=22.9
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
.+++||.++..-.+ +...|=|+|.++..
T Consensus 10 ~~kvGd~C~A~ys~-Dg~wYrA~I~~i~~ 37 (88)
T 1g5v_A 10 QWKVGDKCSAIWSE-DGCIYPATIASIDF 37 (88)
T ss_dssp CCCSSCEEEEECTT-TCCEEEEEEEEEET
T ss_pred CCCCCCEEEEEECC-CCCEEEEEEEEecC
Confidence 67999999987653 37889999999964
No 117
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=27.63 E-value=52 Score=21.42 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.5
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
.++.||.|.|.++. +.=-.|+|.++...
T Consensus 3 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGK--DKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSS--STTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcC--CCCeeeEEEEEEeC
Confidence 46889999999987 56667999999865
No 118
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.53 E-value=20 Score=15.81 Aligned_cols=10 Identities=30% Similarity=0.653 Sum_probs=7.6
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
.+|+.|.+.|
T Consensus 4 ~~C~~C~~~f 13 (30)
T 2m0d_A 4 YQCDYCGRSF 13 (30)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCccc
Confidence 5788888765
No 119
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=27.43 E-value=64 Score=22.56 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=24.0
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
+.|+.||.|.|.++. +.=-.|+|..++..
T Consensus 47 ~~IkKGD~V~Vi~Gk--dKGk~GkVl~V~~k 75 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGS--YKGREGKVVQVYRR 75 (150)
T ss_dssp EECCSSSEEEECSST--TTTCEEEEEEEETT
T ss_pred cccCCCCEEEEeecC--CCCccceEEEEEcC
Confidence 578999999999997 44457999999864
No 120
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.33 E-value=47 Score=20.95 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=24.1
Q ss_pred eEEccCCEEEEccC--CCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPA--DSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~--~~~~~~~ig~I~~i~~~ 51 (164)
..+.+|+-|++.-+ +.+...+-|+|+++...
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~ 40 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDI 40 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCS
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEc
Confidence 47899999999862 11367899999999864
No 121
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.19 E-value=47 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=24.0
Q ss_pred eEEccCCEEEEccCCCCCCCeE-EEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYV-ARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i-g~I~~i~~~ 51 (164)
..|+.||.|.|.++. +.=-. |+|..+...
T Consensus 47 ~~IkkGD~V~Vi~Gk--dKGk~~GkV~~V~~k 76 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGH--YKGQQIGKVVQVYRK 76 (145)
T ss_dssp CBCCTTCEEEECSST--TTTCCSEEEEEEETT
T ss_pred cccCCCCEEEEeecC--CCCcceeEEEEEECC
Confidence 579999999999987 44566 999999864
No 122
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=26.84 E-value=33 Score=24.29 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCcceeeeEEEcCCCe--EEccCCEEEEccCCCCCCCeE--EEEcEEee
Q 031197 6 PGKKDLDSYNIKGTNK--VVRPGDCVLMRPADSDKPPYV--ARVEKIEA 50 (164)
Q Consensus 6 ~~~~~Y~s~~i~g~~~--~~~vGD~V~v~~~~~~~~~~i--g~I~~i~~ 50 (164)
+|+|.| ++.... .+..||-|+|.+..| ..-++ +.|.+|-.
T Consensus 44 ~GkK~f----lrr~~v~~~l~~Gd~vviYaS~P-~~~iVGea~I~~Ii~ 87 (161)
T 2kku_A 44 KGKDVF----VKPATVWKELKPGMKFVFYQSHE-DTGFVGEARIKRVVL 87 (161)
T ss_dssp HSCEEE----EESSCSCTTCCTTEEEEECCCST-TCBCCEEEEEEEEEE
T ss_pred cCceEE----EeccCcccccCCCCEEEEEEcCC-CcEEEEEEEEEEEEe
Confidence 455555 444333 689999999998874 44444 46666654
No 123
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=26.34 E-value=50 Score=20.66 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=14.9
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....+..||.+++.++.
T Consensus 68 ~~~~~~~~l~~Gd~~~ip~~~ 88 (116)
T 2pfw_A 68 NVDGVIKVLTAGDSFFVPPHV 88 (116)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECcCC
Confidence 344444677888998888775
No 124
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=26.04 E-value=42 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.6
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..++.||.|.|.++. +.=-.|+|.++...
T Consensus 14 m~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 42 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGK--HKGQTGKVLLALPR 42 (115)
T ss_dssp CSSCTTSEEECCSSS--STTCEEEEEEEETT
T ss_pred CcccCCCEEEEeEcC--CCCcEEEEEEEECC
Confidence 468899999999987 66788999999864
No 125
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.00 E-value=22 Score=15.62 Aligned_cols=10 Identities=20% Similarity=0.697 Sum_probs=7.2
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
..|+.|.+.|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5788888754
No 126
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=25.95 E-value=48 Score=21.17 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=13.5
Q ss_pred cCCCeEEccCCEEEEccCC
Q 031197 17 KGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 17 ~g~~~~~~vGD~V~v~~~~ 35 (164)
.+....++.||++++.++.
T Consensus 77 ~~~~~~l~~Gd~~~i~~~~ 95 (125)
T 3h8u_A 77 NGIVTHLKAGDIAIAKPGQ 95 (125)
T ss_dssp TTCEEEEETTEEEEECTTC
T ss_pred CCeEEEeCCCCEEEECCCC
Confidence 4444567888888887775
No 127
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=25.77 E-value=31 Score=24.32 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=14.7
Q ss_pred EcCCCeEEccCCEEEEccCC
Q 031197 16 IKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 16 i~g~~~~~~vGD~V~v~~~~ 35 (164)
++|....++.||+|+|.++.
T Consensus 83 idge~~~l~~GD~v~IPpg~ 102 (157)
T 4h7l_A 83 LNGQSYPLTKLLAISIPPLV 102 (157)
T ss_dssp ETTEEEECCTTEEEEECTTC
T ss_pred ECCEEEEeCCCCEEEECCCC
Confidence 44444567899999999886
No 128
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=25.56 E-value=66 Score=20.25 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=15.4
Q ss_pred EEcCCCe-EEccCCEEEEccCC
Q 031197 15 NIKGTNK-VVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~-~~~vGD~V~v~~~~ 35 (164)
.+.+... .++.||.+++.++.
T Consensus 61 ~i~~~~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 61 TLEDQEPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp EETTSCCEEEETTCEEEECTTC
T ss_pred EECCEEEEEeCCCCEEEECCCC
Confidence 4455556 78889988888875
No 129
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.54 E-value=24 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=19.1
Q ss_pred cceee-eecCCCCCCCceEeCcccccccC
Q 031197 137 VAVYC-KCEMPYNPDDLMVQCEGCKDWIY 164 (164)
Q Consensus 137 ~~~~C-~C~~p~~pd~~~~~C~~C~~w~h 164 (164)
...+| +|.++. ....+.|..|.+-||
T Consensus 14 ~D~~C~VC~~~t--~~~l~pCRvC~RvfH 40 (89)
T 1wil_A 14 NDEMCDVCEVWT--AESLFPCRVCTRVFH 40 (89)
T ss_dssp CSCCCTTTCCCC--SSCCSSCSSSSSCCC
T ss_pred CCcccCcccccc--ccceecccccccccc
Confidence 44566 677665 456778999999998
No 130
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=25.51 E-value=77 Score=21.75 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=23.7
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
+.|+.||.|.|.++. +.=-.|+|..++..
T Consensus 47 ~~IkkgD~V~Vi~Gk--dKGk~GkV~~V~~k 75 (135)
T 4a17_S 47 MPVRKDDEVLIVRGK--FKGNKGKVTQVYRK 75 (135)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEETT
T ss_pred ccccCCCEEEEeecC--CCCceeeEEEEEcC
Confidence 578999999999997 44446999999864
No 131
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=25.23 E-value=43 Score=21.44 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=14.8
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....++.||.+++.++.
T Consensus 70 ~i~~~~~~l~~Gd~i~ip~~~ 90 (114)
T 3fjs_A 70 GVDGAQRRLHQGDLLYLGAGA 90 (114)
T ss_dssp EETTEEEEECTTEEEEECTTC
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 445444667888888888775
No 132
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=24.13 E-value=1.4e+02 Score=18.83 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=14.3
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....++.||.++|.++.
T Consensus 68 ~i~~~~~~l~~Gd~~~i~~~~ 88 (128)
T 4i4a_A 68 RINDEDFPVTKGDLIIIPLDS 88 (128)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEECCCcEEEECCCC
Confidence 344444567888888888775
No 133
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=23.89 E-value=1e+02 Score=21.66 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=34.8
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecccc
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEES 69 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~e~ 69 (164)
.+.+||.|.|..+. -.-+.|.|.++..+ .+...|.+..|-|.-.+
T Consensus 127 ~~~~Gd~V~V~~GP--f~g~~G~v~~v~~~-k~r~~V~v~ifgr~t~v 171 (181)
T 2jvv_A 127 LFEPGEMVRVNDGP--FADFNGVVEEVDYE-KSRLKVSVSIFGRATPV 171 (181)
T ss_dssp CCCTTEEEEECSST--TTTEEEEEEEEETT-TTEEEEEEEETTEEEEE
T ss_pred cCCCCCEEEEeccC--CCCcEEEEEEEeCC-CCEEEEEEEECCCCEEE
Confidence 57799999999986 56789999998753 35677888877765543
No 134
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.83 E-value=33 Score=16.55 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=8.7
Q ss_pred ceEeCcccccc
Q 031197 152 LMVQCEGCKDW 162 (164)
Q Consensus 152 ~~~~C~~C~~w 162 (164)
..+||+-|+..
T Consensus 5 f~vqcpvcqq~ 15 (29)
T 3vhs_A 5 FQVQCPVCQQM 15 (29)
T ss_dssp CEEECTTTCCE
T ss_pred eeeeChHHHHh
Confidence 57899999863
No 135
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=23.82 E-value=56 Score=20.37 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.1
Q ss_pred EcCCCeEEccCCEEEEccCC
Q 031197 16 IKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 16 i~g~~~~~~vGD~V~v~~~~ 35 (164)
+++....+..||.+++.++.
T Consensus 75 ~~~~~~~l~~Gd~~~ip~~~ 94 (115)
T 1yhf_A 75 IDQETYRVAEGQTIVMPAGI 94 (115)
T ss_dssp ETTEEEEEETTCEEEECTTS
T ss_pred ECCEEEEECCCCEEEECCCC
Confidence 44444567888888888775
No 136
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=23.42 E-value=71 Score=21.73 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
.+++||.|++..+. .......+|.+|..
T Consensus 91 ~l~~GD~v~~~~~~-~~~~~~~~V~~v~~ 118 (145)
T 1at0_A 91 RIEEKNQVLVRDVE-TGELRPQRVVKVGS 118 (145)
T ss_dssp GCCTTCEEEEECTT-TCCEEEEEEEEEEE
T ss_pred HCcCCCEEEEecCC-CCCEEEEEEEEEEE
Confidence 68999999998873 13466677777754
No 137
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=23.30 E-value=1.2e+02 Score=18.00 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=20.9
Q ss_pred CCeEEEEcEEeeccCCcEEEEEEEe
Q 031197 39 PPYVARVEKIEADHRNNVKVRVRWY 63 (164)
Q Consensus 39 ~~~ig~I~~i~~~~~g~~~v~v~Wf 63 (164)
...|-+|..+..+.+|+.++-++|=
T Consensus 10 E~~Ve~I~g~~~~~~g~L~flikwk 34 (68)
T 1e0b_A 10 EDLVSSIDTIERKDDGTLEIYLTWK 34 (68)
T ss_dssp TTTEEEEEEEEECTTSCEEEEEEET
T ss_pred hhheeEEEEEEECCCCEEEEEEEEC
Confidence 4668899999887789999999984
No 138
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=23.27 E-value=49 Score=18.35 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=19.3
Q ss_pred EccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 23 VRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
.++||.++.+-.+ +...|=|+|.++..
T Consensus 2 wk~G~~c~A~~s~-Dg~wYrA~I~~i~~ 28 (54)
T 3s6w_A 2 WKPGDECFALYWE-DNKFYRAEVEALHS 28 (54)
T ss_dssp CCTTCEEEEEETT-TTEEEEEEEEEC--
T ss_pred CCCCCEEEEEECC-CCCEEEEEEEEEeC
Confidence 4789998887433 26788999999864
No 139
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.21 E-value=25 Score=15.40 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=7.3
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
..|+.|.+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4688888765
No 140
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.12 E-value=27 Score=15.14 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=7.3
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
.+|+.|.+-|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 5788888754
No 141
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.10 E-value=50 Score=20.29 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=17.3
Q ss_pred cCCCcceee-eecCCCCCCCceEeCcccccc
Q 031197 133 TPDRVAVYC-KCEMPYNPDDLMVQCEGCKDW 162 (164)
Q Consensus 133 ~p~~~~~~C-~C~~p~~pd~~~~~C~~C~~w 162 (164)
.|+.....| .|.++++.-..-..|..|.+.
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred ccCCCCCcCcCcCCccccchhhhhhcCCCcE
Confidence 444444455 677776666555666666543
No 142
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.85 E-value=57 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=15.4
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....+..||+|+|.++.
T Consensus 78 ~v~g~~~~l~~Gd~i~ip~~~ 98 (156)
T 3kgz_A 78 LVGETISDVAQGDLVFIPPMT 98 (156)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 455555677889999888775
No 143
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=22.84 E-value=51 Score=20.27 Aligned_cols=16 Identities=6% Similarity=0.347 Sum_probs=10.7
Q ss_pred CeEEccCCEEEEccCC
Q 031197 20 NKVVRPGDCVLMRPAD 35 (164)
Q Consensus 20 ~~~~~vGD~V~v~~~~ 35 (164)
...++.||.+++.++.
T Consensus 63 ~~~l~~Gd~~~i~~~~ 78 (113)
T 2gu9_A 63 TQALQAGSLIAIERGQ 78 (113)
T ss_dssp EEEECTTEEEEECTTC
T ss_pred EEEeCCCCEEEECCCC
Confidence 3556777777777664
No 144
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.74 E-value=58 Score=22.72 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=22.7
Q ss_pred EcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEeeccCCcEEEEEEEeeecccccCc
Q 031197 16 IKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGG 72 (164)
Q Consensus 16 i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~~~g~~~v~v~Wfyrp~e~~~~ 72 (164)
+.+....++.||++++.++.+ . -+..... ..+ +.|+..|....+|
T Consensus 141 ~~~~~~~l~~GD~i~i~~~~~----H------~~~n~~~-~~~-~l~v~~~~~~~~~ 185 (192)
T 1y9q_A 141 FDEQWHELQQGEHIRFFSDQP----H------GYAAVTE-KAV-FQNIVAYPRREGG 185 (192)
T ss_dssp ETTEEEEECTTCEEEEECSSS----E------EEEESSS-CEE-EEEEEECCC----
T ss_pred ECCEEEEeCCCCEEEEcCCCC----e------EeECCCC-CcE-EEEEEecCcccCC
Confidence 344335678888888877652 1 1111222 234 7777777655554
No 145
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.39 E-value=18 Score=16.10 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=6.9
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
.+|+.|.+.|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 4688887754
No 146
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=22.70 E-value=51 Score=19.93 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=15.2
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....+..||.+++.++.
T Consensus 64 ~~~~~~~~l~~Gd~~~ip~~~ 84 (102)
T 3d82_A 64 AFRDQNITLQAGEMYVIPKGV 84 (102)
T ss_dssp ECSSCEEEEETTEEEEECTTC
T ss_pred EECCEEEEEcCCCEEEECCCC
Confidence 344455678889988888876
No 147
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.67 E-value=28 Score=15.15 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=7.2
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
.+|+.|.+-|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 5788887754
No 148
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=22.36 E-value=62 Score=21.87 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=13.3
Q ss_pred EcCCCeEEccCCEEEEccC
Q 031197 16 IKGTNKVVRPGDCVLMRPA 34 (164)
Q Consensus 16 i~g~~~~~~vGD~V~v~~~ 34 (164)
+.+....++.||++++.++
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~ 101 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCH 101 (162)
T ss_dssp ETTEEEEECTTCEEEECTT
T ss_pred ECCEEEEeCCCCEEEECCC
Confidence 4444466788888888876
No 149
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.90 E-value=19 Score=15.62 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=6.7
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
.+|+.|++-|
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 4677887654
No 150
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=22.07 E-value=57 Score=17.76 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=12.7
Q ss_pred CCCCCCceEeCccccc
Q 031197 146 PYNPDDLMVQCEGCKD 161 (164)
Q Consensus 146 p~~pd~~~~~C~~C~~ 161 (164)
|..++..|--|.+|++
T Consensus 10 ple~~~~YRvC~~Cgk 25 (44)
T 2lo3_A 10 PLDKPIQYRVCEKCGK 25 (44)
T ss_dssp CCCCCCCEEECTTTCC
T ss_pred ccCccccchhhcccCC
Confidence 5557778999999986
No 151
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.87 E-value=29 Score=16.40 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=8.6
Q ss_pred ceEeCccccccc
Q 031197 152 LMVQCEGCKDWI 163 (164)
Q Consensus 152 ~~~~C~~C~~w~ 163 (164)
.-.+|+.|.+.|
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2elq_A 8 KPFKCSLCEYAT 19 (36)
T ss_dssp CSEECSSSSCEE
T ss_pred CCccCCCCCchh
Confidence 346888888765
No 152
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=53 Score=21.69 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=17.2
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEe
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIE 49 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~ 49 (164)
..+..||.|+|...+ -+..--|+|...+
T Consensus 52 IwI~~GD~VlVe~~~-yd~~~kg~Iv~r~ 79 (111)
T 2dgy_A 52 IWIKRGDFLIVDPIE-EGEKVKAEISFVL 79 (111)
T ss_dssp CCCCSSCEEEEEECS-SCSSCCEEEEEEC
T ss_pred EEEcCCCEEEEEecc-cCCcceEEEEEEe
Confidence 557889999998765 1223445554444
No 153
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.74 E-value=27 Score=23.49 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=19.2
Q ss_pred CCCcceee-eecCCCCCCCceEeCccccccc
Q 031197 134 PDRVAVYC-KCEMPYNPDDLMVQCEGCKDWI 163 (164)
Q Consensus 134 p~~~~~~C-~C~~p~~pd~~~~~C~~C~~w~ 163 (164)
|......| .|..+++.-..-..|..|++.|
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CccccCcccCcCCccccccccccCCCCCCee
Confidence 45555677 8888888777778888887654
No 154
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=21.62 E-value=78 Score=20.77 Aligned_cols=40 Identities=20% Similarity=0.441 Sum_probs=23.3
Q ss_pred CCcceeeeEEEcCCCeEEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 6 PGKKDLDSYNIKGTNKVVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 6 ~~~~~Y~s~~i~g~~~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
.|+|.++-=.-++.-..+++||.+.+. .....++|..+..
T Consensus 17 ~G~KtiEiRlnd~k~~~ikvGD~I~f~-----~~~l~~~V~~v~~ 56 (109)
T 2z0t_A 17 AGKKKIEGRLYDEKRRQIKPGDIIIFE-----GGKLKVKVKGIRV 56 (109)
T ss_dssp TTSCCEEEEECCTTGGGCCTTCEEEEG-----GGTEEEEEEEEEE
T ss_pred cCCCEEEEEecchhhhcCCCCCEEEEC-----CCEEEEEEEEEEc
Confidence 455554433223322357899999992 2356777777654
No 155
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=21.31 E-value=53 Score=20.20 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=18.6
Q ss_pred cCCCcceee-eecCCCCCCCceEeCcccccc
Q 031197 133 TPDRVAVYC-KCEMPYNPDDLMVQCEGCKDW 162 (164)
Q Consensus 133 ~p~~~~~~C-~C~~p~~pd~~~~~C~~C~~w 162 (164)
.|+.....| .|.++++.-..-..|..|.+.
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcE
Confidence 344444556 677777776666666666554
No 156
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=21.17 E-value=53 Score=21.03 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=14.3
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....++.||.+++.++.
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~ 82 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDG 82 (125)
T ss_dssp EETTEEEEEETTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 344444667888888887765
No 157
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=38 Score=15.92 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=8.9
Q ss_pred ceEeCccccccc
Q 031197 152 LMVQCEGCKDWI 163 (164)
Q Consensus 152 ~~~~C~~C~~w~ 163 (164)
...+|+.|.+.|
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2els_A 8 KIFTCEYCNKVF 19 (36)
T ss_dssp CCEECTTTCCEE
T ss_pred CCEECCCCCcee
Confidence 346899998765
No 158
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=20.92 E-value=94 Score=18.72 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=21.8
Q ss_pred eEEccCCEEEEccCCCCCCCeEEEEcEEeec
Q 031197 21 KVVRPGDCVLMRPADSDKPPYVARVEKIEAD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~ig~I~~i~~~ 51 (164)
..+++||.|-|.++. -.--.|.|+++..+
T Consensus 16 K~F~~GDHVkVi~G~--~~getGlVV~v~~d 44 (69)
T 2do3_A 16 KYFKMGDHVKVIAGR--FEGDTGLIVRVEEN 44 (69)
T ss_dssp SSCCTTCEEEESSST--TTTCEEEEEEECSS
T ss_pred eeccCCCeEEEeccE--EcCceEEEEEEeCC
Confidence 368999999999986 44557777777643
No 159
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=20.79 E-value=88 Score=17.46 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=18.2
Q ss_pred CCeEEccCCEEEEccCCCCCCCeEEEE
Q 031197 19 TNKVVRPGDCVLMRPADSDKPPYVARV 45 (164)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~ig~I 45 (164)
++..++.||.+.|.... ++.=|.|++
T Consensus 36 ~eLsf~~Gd~i~v~~~~-~~~Ww~g~~ 61 (62)
T 1g2b_A 36 REVTMKKGDILTLLNST-NKDWWKVEV 61 (62)
T ss_dssp TBCCBCTTCEEEEEECC-SSSEEEEEE
T ss_pred CccCCCCCCEEEEEEec-CCCEEEEEe
Confidence 34678899999998765 355566654
No 160
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=20.78 E-value=62 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.2
Q ss_pred EEEcCCCeEEccCCEEEEccCCC
Q 031197 14 YNIKGTNKVVRPGDCVLMRPADS 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
++++|....++.||++++.++.+
T Consensus 70 ~~i~~~~~~l~~Gd~~~~p~~~~ 92 (227)
T 3rns_A 70 IFIENNKKTISNGDFLEITANHN 92 (227)
T ss_dssp EEESSCEEEEETTEEEEECSSCC
T ss_pred EEECCEEEEECCCCEEEECCCCC
Confidence 45666667899999999998863
No 161
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.78 E-value=25 Score=15.42 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=7.0
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
.+|+.|.+-|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 5688887654
No 162
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=20.63 E-value=68 Score=22.38 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=11.0
Q ss_pred CeEEccCCEEEEccCC
Q 031197 20 NKVVRPGDCVLMRPAD 35 (164)
Q Consensus 20 ~~~~~vGD~V~v~~~~ 35 (164)
...++.||++++.++.
T Consensus 163 ~~~l~~GD~~~~~~~~ 178 (198)
T 2bnm_A 163 EALLPTGASMFVEEHV 178 (198)
T ss_dssp EEEECTTCEEEECTTC
T ss_pred cEEECCCCEEEeCCCC
Confidence 3567778888777664
No 163
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=25.73 E-value=22 Score=15.79 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=6.9
Q ss_pred EeCccccccc
Q 031197 154 VQCEGCKDWI 163 (164)
Q Consensus 154 ~~C~~C~~w~ 163 (164)
.+|+.|.+.|
T Consensus 4 ~~C~~C~k~f 13 (30)
T 2lvr_A 4 YVCIHCQRQF 13 (30)
Confidence 4688887654
No 164
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=20.31 E-value=72 Score=22.05 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=15.2
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+.+....++.||+|+|.++.
T Consensus 90 ~i~~~~~~l~~Gd~i~ip~~~ 110 (167)
T 3ibm_A 90 VLDDRVEPLTPLDCVYIAPHA 110 (167)
T ss_dssp EETTEEEEECTTCEEEECTTC
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 445544677888999888875
No 165
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=20.14 E-value=62 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred EEcCCCeEEccCCEEEEccCC
Q 031197 15 NIKGTNKVVRPGDCVLMRPAD 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+.+....++.||.+++.++.
T Consensus 75 ~~~~~~~~l~~Gd~~~ip~~~ 95 (126)
T 4e2g_A 75 TIGEETRVLRPGMAYTIPGGV 95 (126)
T ss_dssp EETTEEEEECTTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 344444677888888888765
No 166
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=20.11 E-value=75 Score=20.79 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.6
Q ss_pred ceeeeEEEcCCCeEEccCCEEEEccCCC
Q 031197 9 KDLDSYNIKGTNKVVRPGDCVLMRPADS 36 (164)
Q Consensus 9 ~~Y~s~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
+..+.|..+......++||.|.|....|
T Consensus 37 kr~kk~~aHDe~n~~k~GD~V~I~E~RP 64 (105)
T 2vqe_Q 37 KRSKKYLAHDPEEKYKLGDVVEIIESRP 64 (105)
T ss_dssp EEEEEEEEECTTCCCCTTCEEEEEEEEE
T ss_pred ecceEEEEECCCCCCCCCCEEEEEEccc
Confidence 3344566666667899999999976543
No 167
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=20.11 E-value=77 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=18.6
Q ss_pred EEccCCEEEEccCCCCCCCeEEEEcEEee
Q 031197 22 VVRPGDCVLMRPADSDKPPYVARVEKIEA 50 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~ig~I~~i~~ 50 (164)
.+..||.|.|...+- +..-=|+|...+.
T Consensus 58 wI~~GD~VlVe~~~y-d~~~Kg~Iv~r~~ 85 (102)
T 1jt8_A 58 WVREGDVVIVKPWEV-QGDQKCDIIWRYT 85 (102)
T ss_dssp CCCSCEEEEECCBCC-TTSEEEEEEEESS
T ss_pred EecCCCEEEEEeccC-CCCceEEEEEEeC
Confidence 478999999987652 2244577766653
No 168
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.08 E-value=34 Score=16.48 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=8.5
Q ss_pred ceEeCccccccc
Q 031197 152 LMVQCEGCKDWI 163 (164)
Q Consensus 152 ~~~~C~~C~~w~ 163 (164)
.-.+|+.|.+.|
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elm_A 8 HLYYCSQCHYSS 19 (37)
T ss_dssp CEEECSSSSCEE
T ss_pred cCeECCCCCccc
Confidence 346788888765
No 169
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=20.02 E-value=26 Score=18.73 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=10.2
Q ss_pred ceEeCccccccc
Q 031197 152 LMVQCEGCKDWI 163 (164)
Q Consensus 152 ~~~~C~~C~~w~ 163 (164)
.++-|+.|++.|
T Consensus 10 ~yl~CE~C~~~~ 21 (39)
T 2l9z_A 10 FTIWCTLCDRAY 21 (39)
T ss_dssp CSEEEGGGTEEE
T ss_pred hhhHHHHHhhhc
Confidence 789999998865
Done!