BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031198
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 17/131 (12%)
Query: 6 QRRRALHRKLHILRTLT-NSKSVKKSSIIMDSLLYVCKLKLKLE--------------AI 50
QRR L+++ + LR + N + K+S++ D++ Y+ +LK KL+ +
Sbjct: 423 QRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVM 482
Query: 51 KREYSNLMAIKKAYLDLMKHNHV--PKEVKVEKIGENFIVRVRCNKGENRLVSILEAFEE 108
+E N + K L + + V EV V+ IG + ++R++C+K + +EA +E
Sbjct: 483 NKEAGNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKE 542
Query: 109 MGLIVRQATVS 119
+ L V A++S
Sbjct: 543 LDLEVNHASLS 553
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 6 QRRRALHRKLHILRTLTNSKS-VKKSSIIMDSLLY-------VCKLKLKLEAIKREYSNL 57
+RR+ L+ +L++LR++ S + ++SI+ D++ Y + L +LE+ S+L
Sbjct: 274 RRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPPSSSSL 333
Query: 58 MAIKKAYLDL---MKHNHVPKEVKVEKIGENFIVRVR------------CNKGENRLVSI 102
+ L +K P G+ V VR C + L+S
Sbjct: 334 HPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRRPGLLLST 393
Query: 103 LEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKA 151
+ A + +GL V+QA +SC FA+D +Q E DV +KA
Sbjct: 394 MRALDNLGLDVQQAVISCFNGFALDVFRA----EQCQEDHDVLPEQIKA 438
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 27/138 (19%)
Query: 6 QRRRALHRKLHILRTLT-NSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMAIKKAY 64
QRR L+++ + LR + N + K+S++ D++ Y+ +LK KL+ + S+ I+K
Sbjct: 422 QRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQQAE---SDKEEIQKKL 478
Query: 65 LDLMKHNH-----------------------VPKEVKVEKIGENFIVRVRCNKGENRLVS 101
+ K + + E+ V+ IG + ++RV+C K ++
Sbjct: 479 DGMSKEGNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGAR 538
Query: 102 ILEAFEEMGLIVRQATVS 119
+EA +E+ L V A++S
Sbjct: 539 FMEALKELDLEVNHASLS 556
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION
FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1
Length = 318
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 23/130 (17%)
Query: 1 MVSRLQRRRALHRKLHILRTL-TNSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMA 59
++S +RR + KL+ LR+L N + K+SI+ D++LYV +L+ + + +K + + L A
Sbjct: 133 LISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEA 192
Query: 60 IKKAYLDLMKHN------------HVPKE--------VKVEKIGENFIVRVRCNKGENRL 99
+ +H + P ++VE+ G F VR+ CNKGE
Sbjct: 193 SLNSTGGYQEHAPDAQKTQPFRGINPPASKKIIQMDVIQVEEKG--FYVRLVCNKGEGVA 250
Query: 100 VSILEAFEEM 109
S+ ++ E +
Sbjct: 251 PSLYKSLESL 260
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2
SV=1
Length = 590
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 6 QRRRALHRKLHILRTLT-NSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMAIKKAY 64
QRR L+++ + LR++ N + K+S++ D++ Y+ +L KL+ ++ E L
Sbjct: 440 QRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAERERLGYSSNPP 499
Query: 65 LDLMKHNHVPKEVKVEKIGENFIVRVRCNKGENRLVSILEAFEE 108
+ L ++ V+ GE+ VR+ C + I AFEE
Sbjct: 500 ISL------DSDINVQTSGEDVTVRINCPLESHPASRIFHAFEE 537
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2
SV=1
Length = 248
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 26/137 (18%)
Query: 1 MVSRLQRRRALHRKLHILRTLT-NSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMA 59
+VS RR+ L+++L LR++ N + K+SII D++ Y+ L+ + + ++ E L +
Sbjct: 57 IVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELES 116
Query: 60 IKKAYLDLMKHNH----VPK--------------------EVKVEKIGE-NFIVRVRCNK 94
K+ L K VP E+KV +GE +V V CNK
Sbjct: 117 TPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTCNK 176
Query: 95 GENRLVSILEAFEEMGL 111
+ +V + E FE + L
Sbjct: 177 RTDTMVKLCEVFESLNL 193
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana
GN=AMS PE=1 SV=2
Length = 571
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 85/200 (42%), Gaps = 41/200 (20%)
Query: 1 MVSRLQRRRALHRKLHILRTLTNS-KSVKKSSIIMDSLLYVCKLKLKLEAIKREY----- 54
+++ +RR+ L+ +L+ LR+L + ++SI+ D++ YV +L+ + + ++ E
Sbjct: 316 LMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSE 375
Query: 55 -----------------------------SNLMAIKKAYLDLMKHNHVPKE----VKVEK 81
SN+ ++K+ +DL N +E V V +
Sbjct: 376 TEDGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPSVKQD-VDLENSNDKGQEMEPQVDVAQ 434
Query: 82 I-GENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALE 140
+ G F V+V C ++EA + +GL V A + + V +N + ++
Sbjct: 435 LDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVEKNDNEMVQ 494
Query: 141 ARDVAQVILKATEKQAVEWQ 160
A V +L+ T + WQ
Sbjct: 495 AEHVRNSLLEITRNTSRGWQ 514
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 1 MVSRLQRRRALHRKLHILRTLTNSKS-VKKSSIIMDSLLYVCKLKLKLEAIKRE------ 53
+++ +RR+ L+ +L++LR++ S + ++SI+ D++ Y+ +L ++ + E
Sbjct: 309 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPP 368
Query: 54 ---------YSNLMAIKKAYLDLMKHNHVPKEVKVEKIGENFIVRVR------------C 92
+ L + +K P + K G+ V VR C
Sbjct: 369 GSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPK-GQQARVEVRLREGRAVNIHMFC 427
Query: 93 NKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQ 133
+ L++ ++A + +GL V+QA +SC FA+D Q
Sbjct: 428 GRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQ 468
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2
SV=1
Length = 423
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 6 QRRRALHRKLHILRTLTNSKS-VKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMAIKKAY 64
QRR L+ + + LR + S + K+S++ D++ Y+ LK K++ ++ E + +
Sbjct: 256 QRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKKMKMTETDK 315
Query: 65 LDLMKH-----------NHVPK--------EVKVEKIGENFIVRVRCNKGENRLVSILEA 105
LD N P EV+V+ +GE I+RV+ + +++ A
Sbjct: 316 LDNSSSNTSPSSVEYQVNQKPSKSNRGSDLEVQVKIVGEEAIIRVQTENVNHPTSALMSA 375
Query: 106 FEEMGLIVRQATVS 119
EM V+ A S
Sbjct: 376 LMEMDCRVQHANAS 389
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1
SV=1
Length = 351
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 11 LHRKLHILRTLTNSKS-VKKSSIIMDSLLYVCKLKLKLEAIKRE-----YSNLMAIKKAY 64
L+ +L +LR++ S + ++SI+ D++ Y+ +L K+ ++ E SN K +
Sbjct: 190 LNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLF 249
Query: 65 LDLMKHN-------HVPKEVKVEKIGENFIVRVRCNKGENRLVSILEAFEEMGLIVRQAT 117
DL N + PK ++++ E+ V + C+ L+S + E +GL + Q
Sbjct: 250 GDLKDLNANEPLVRNSPK-FEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCV 308
Query: 118 VSCNYYFAMDAIAVPQNPQQA-LEARDVAQVILK 150
+SC F++ A Q+ + + D+ Q + +
Sbjct: 309 ISCFSDFSLQASCSEGAEQRDFITSEDIKQALFR 342
>sp|Q99PS0|K1C23_MOUSE Keratin, type I cytoskeletal 23 OS=Mus musculus GN=Krt23 PE=2 SV=1
Length = 422
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 35 DSLLYVCKLKLKLEAIKREYSNLMAIKKAYLDLMKHNHVPKEVKVEKIGENFIVRVRCNK 94
D + L+ ++E +++E L+ +KK + M+ NH+P + KV V+V
Sbjct: 184 DLTIVTTDLEQEVEGMRKE---LILMKKRHEQEMEENHLPSDFKVS-------VKVDTTP 233
Query: 95 GENRLVSILEAF-EEMGLIVRQATVSCNYYFAMDAIAVPQ 133
GE+ L+ +LE +E LI+++ + +F + A+ Q
Sbjct: 234 GED-LIKVLEDMRQEYELIIKKKHQELDTWFREQSAAMAQ 272
>sp|Q811A3|PLOD2_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Rattus
norvegicus GN=Plod2 PE=2 SV=1
Length = 737
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 62 KAYLDLMKHNHVPKEVKVEKIGENFIVRVRCNKGENRLVSILEAFEE-----MGLIVRQA 116
K L L HN KEV EK + F+ + + + ++V E + MG+ +
Sbjct: 325 KEALRLFVHN---KEVYHEKDIKAFVDKAKHDISSIKIVGPEENLSQAEARNMGMDFCRQ 381
Query: 117 TVSCNYYFAMDAIAVPQNPQ 136
C+YYF++DA V NP+
Sbjct: 382 DEKCDYYFSVDADVVLTNPR 401
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 1 MVSRLQRRRALHRKLHILRTLTNSKS-VKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMA 59
+V+ +RR L+ K LR++ + + K SI+ D++ YV L+ ++ E N
Sbjct: 365 VVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRV----HELENTHH 420
Query: 60 IKKAYLDLMKHNHVPKEVKVEKIGENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119
++ +EV+V I + ++ +RC + L+ IL+ E+G+ S
Sbjct: 421 EQQHKRTRTCKRKTSEEVEVSIIENDVLLEMRCEYRDGLLLDILQVLHELGIETTAVHTS 480
Query: 120 CN 121
N
Sbjct: 481 VN 482
>sp|Q9R0B9|PLOD2_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Mus musculus
GN=Plod2 PE=2 SV=2
Length = 737
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 62 KAYLDLMKHNHVPKEVKVEKIGENFIVRVRCNKGENRLVSILEAFEE-----MGLIVRQA 116
K L L HN KEV EK + F+ + + + ++V E + MG+ +
Sbjct: 325 KEALQLFIHN---KEVYHEKDIKVFVDKAKHDISSIKIVGPEENLSQAEARNMGMDFCRQ 381
Query: 117 TVSCNYYFAMDAIAVPQNPQ 136
C+YYF++DA V NP+
Sbjct: 382 DEKCDYYFSVDADVVLTNPR 401
>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis
thaliana GN=RPP8L2 PE=1 SV=1
Length = 906
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 18 LRTLT--NSKSVKKSSIIMDSLLYV-CKLKLKLEAIKREYSNLMAIKKAYLDLMKHNHVP 74
LRTLT N K +K+ + D L YV C +LK+E +KRE++ + I D K H+P
Sbjct: 843 LRTLTIDNCKKLKQ---LPDGLKYVTCLKELKIERMKREWTERLVIGGE--DYYKVQHIP 897
>sp|Q46EK8|Y706_METBF UPF0288 protein Mbar_A0706 OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=Mbar_A0706 PE=3 SV=1
Length = 518
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 98 RLVSILEAFEEMGLIVRQATVSC--NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQ 155
++V + +FEE GL++ V + Y DA+ V Q+P LE A+V A +
Sbjct: 325 QIVLLGHSFEEAGLVLSSIGVELIKDGYTGEDAVIVSQDPPTTLEILGEAKVTAYAVPRD 384
Query: 156 A---VEWQPSKA 164
+E P KA
Sbjct: 385 KLIEIELYPEKA 396
>sp|Q47DJ8|MUTS_DECAR DNA mismatch repair protein MutS OS=Dechloromonas aromatica (strain
RCB) GN=mutS PE=3 SV=1
Length = 860
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 45 LKLEAIKREYSNLMAIKKAYLDLMKHNHVPKEVKVEKIGENFIVRVRCNKGENRLVSILE 104
+ +EA +RE S + ++K Y + V+KI +++ R E + L+
Sbjct: 451 VDMEARERERSGIASLKVEYNKVHGFYIEVTHANVDKIPDDYRRRQTLKNAERYITPELK 510
Query: 105 AFEEMGLIVRQATVSCN---YYFAMDAIAVPQNPQQALEARDVAQVILKA 151
AFE+ L ++ +++ Y +DA+ +P P AR +AQ+ L A
Sbjct: 511 AFEDKALSAQERSLAREKLLYEAILDAL-LPVVPTLQTIARAIAQLDLLA 559
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,201,395
Number of Sequences: 539616
Number of extensions: 1766411
Number of successful extensions: 5701
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5691
Number of HSP's gapped (non-prelim): 32
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)