Query 031198
Match_columns 164
No_of_seqs 107 out of 566
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.3 3E-12 6.6E-17 81.5 4.5 47 2-48 2-52 (53)
2 cd00083 HLH Helix-loop-helix d 99.2 1.2E-11 2.6E-16 80.3 4.3 46 2-47 10-59 (60)
3 PF00010 HLH: Helix-loop-helix 99.1 1.6E-10 3.6E-15 74.4 4.0 42 3-44 8-55 (55)
4 cd04897 ACT_ACR_3 ACT domain-c 98.6 6.3E-07 1.4E-11 61.8 9.2 67 87-153 3-73 (75)
5 cd04895 ACT_ACR_1 ACT domain-c 98.5 1.3E-06 2.7E-11 59.9 9.3 67 86-152 2-68 (72)
6 cd04927 ACT_ACR-like_2 Second 98.5 1.7E-06 3.8E-11 59.2 9.4 69 86-154 1-73 (76)
7 cd04900 ACT_UUR-like_1 ACT dom 98.5 3.1E-06 6.7E-11 57.1 9.8 67 86-152 2-69 (73)
8 cd04896 ACT_ACR-like_3 ACT dom 98.4 2.9E-06 6.2E-11 58.6 9.5 67 87-154 2-74 (75)
9 cd04928 ACT_TyrKc Uncharacteri 98.3 1.4E-05 3E-10 54.2 9.2 64 87-152 3-67 (68)
10 cd04925 ACT_ACR_2 ACT domain-c 98.2 2.1E-05 4.5E-10 53.4 9.2 66 87-152 2-72 (74)
11 cd04899 ACT_ACR-UUR-like_2 C-t 98.0 0.00011 2.4E-09 48.3 9.0 45 87-131 2-46 (70)
12 cd04926 ACT_ACR_4 C-terminal 97.9 0.00018 3.9E-09 48.4 9.1 67 86-153 2-68 (72)
13 KOG1318 Helix loop helix trans 97.8 5.2E-05 1.1E-09 67.1 6.0 46 4-49 241-291 (411)
14 PRK05007 PII uridylyl-transfer 97.6 0.00048 1E-08 66.4 10.0 81 74-154 795-880 (884)
15 PRK00275 glnD PII uridylyl-tra 97.5 0.0011 2.5E-08 63.9 11.6 82 73-154 800-887 (895)
16 PRK04374 PII uridylyl-transfer 97.5 0.0013 2.9E-08 63.4 11.5 80 73-152 782-866 (869)
17 PF01842 ACT: ACT domain; Int 97.5 0.0012 2.7E-08 42.2 7.8 61 86-151 1-64 (66)
18 KOG3960 Myogenic helix-loop-he 97.4 0.00034 7.3E-09 58.3 5.2 56 2-57 124-182 (284)
19 PRK01759 glnD PII uridylyl-tra 97.3 0.0015 3.3E-08 62.8 10.1 80 73-152 769-853 (854)
20 PRK05092 PII uridylyl-transfer 97.2 0.0032 7E-08 61.0 11.4 82 73-154 829-916 (931)
21 PRK03381 PII uridylyl-transfer 97.2 0.0029 6.3E-08 60.3 10.8 77 74-152 694-772 (774)
22 cd04873 ACT_UUR-ACR-like ACT d 97.2 0.007 1.5E-07 39.1 9.3 44 87-130 2-45 (70)
23 PRK03381 PII uridylyl-transfer 97.2 0.0025 5.5E-08 60.6 9.9 71 84-154 598-668 (774)
24 PF13740 ACT_6: ACT domain; PD 97.2 0.0023 4.9E-08 43.5 7.0 70 85-158 2-72 (76)
25 PRK03059 PII uridylyl-transfer 97.2 0.0029 6.3E-08 60.9 10.0 77 74-152 773-854 (856)
26 KOG1319 bHLHZip transcription 97.2 0.00069 1.5E-08 54.4 4.8 55 3-57 69-131 (229)
27 KOG3561 Aryl-hydrocarbon recep 97.1 0.00039 8.5E-09 66.1 3.9 44 3-46 27-75 (803)
28 KOG4304 Transcriptional repres 97.1 0.00042 9.2E-09 57.8 3.2 46 4-49 40-94 (250)
29 cd04875 ACT_F4HF-DF N-terminal 97.1 0.011 2.3E-07 39.5 9.5 70 88-159 2-74 (74)
30 PRK01759 glnD PII uridylyl-tra 97.1 0.0069 1.5E-07 58.3 11.6 82 74-155 664-751 (854)
31 PRK05007 PII uridylyl-transfer 97.1 0.0071 1.5E-07 58.4 11.7 82 74-155 688-775 (884)
32 TIGR01693 UTase_glnD [Protein- 97.0 0.0044 9.5E-08 59.4 9.7 67 86-152 780-849 (850)
33 TIGR01693 UTase_glnD [Protein- 97.0 0.0058 1.3E-07 58.6 10.2 73 84-156 667-744 (850)
34 cd04893 ACT_GcvR_1 ACT domains 96.9 0.0087 1.9E-07 40.7 8.2 69 86-158 2-71 (77)
35 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0076 1.7E-07 41.7 7.8 72 86-159 2-74 (88)
36 cd04869 ACT_GcvR_2 ACT domains 96.9 0.014 3.1E-07 39.2 8.8 69 88-159 2-77 (81)
37 PRK03059 PII uridylyl-transfer 96.8 0.0096 2.1E-07 57.4 9.8 72 84-155 677-752 (856)
38 PRK00194 hypothetical protein; 96.8 0.012 2.7E-07 40.7 7.9 73 85-159 3-76 (90)
39 PRK00275 glnD PII uridylyl-tra 96.7 0.014 3E-07 56.5 10.4 72 84-155 703-780 (895)
40 COG2844 GlnD UTP:GlnB (protein 96.6 0.01 2.2E-07 56.7 8.6 81 73-154 777-859 (867)
41 PRK05092 PII uridylyl-transfer 96.6 0.025 5.3E-07 55.0 11.5 82 73-154 718-806 (931)
42 KOG0561 bHLH transcription fac 96.6 0.0016 3.5E-08 55.6 2.8 47 4-50 68-117 (373)
43 cd04870 ACT_PSP_1 CT domains f 96.5 0.026 5.6E-07 37.9 8.0 69 87-158 1-70 (75)
44 PRK04374 PII uridylyl-transfer 96.3 0.022 4.8E-07 55.0 9.3 72 84-155 689-762 (869)
45 PRK13010 purU formyltetrahydro 95.9 0.054 1.2E-06 46.1 8.8 74 85-159 9-85 (289)
46 PF13291 ACT_4: ACT domain; PD 95.9 0.12 2.6E-06 34.8 8.9 36 86-121 7-42 (80)
47 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.9 0.12 2.7E-06 33.4 8.7 70 86-161 1-73 (79)
48 KOG2483 Upstream transcription 95.9 0.023 5.1E-07 47.0 6.1 55 4-58 67-125 (232)
49 cd04886 ACT_ThrD-II-like C-ter 95.8 0.096 2.1E-06 33.4 7.9 64 88-158 1-70 (73)
50 PRK13011 formyltetrahydrofolat 95.3 0.17 3.7E-06 42.9 9.5 72 85-159 7-81 (286)
51 TIGR00655 PurU formyltetrahydr 95.1 0.18 4E-06 42.6 8.9 71 87-159 2-76 (280)
52 KOG4029 Transcription factor H 95.0 0.025 5.4E-07 46.2 3.5 50 4-53 117-171 (228)
53 PRK06027 purU formyltetrahydro 94.8 0.25 5.5E-06 41.8 9.1 73 85-159 6-81 (286)
54 COG2844 GlnD UTP:GlnB (protein 94.6 0.2 4.3E-06 48.2 8.6 81 78-158 677-761 (867)
55 cd04877 ACT_TyrR N-terminal AC 94.5 0.49 1.1E-05 31.4 8.3 35 87-121 2-36 (74)
56 cd04887 ACT_MalLac-Enz ACT_Mal 94.2 0.36 7.8E-06 31.6 7.1 34 88-121 2-35 (74)
57 cd04909 ACT_PDH-BS C-terminal 93.7 0.89 1.9E-05 29.3 8.2 34 87-120 3-36 (69)
58 cd04888 ACT_PheB-BS C-terminal 93.6 0.5 1.1E-05 30.9 6.9 43 87-129 2-46 (76)
59 cd02116 ACT ACT domains are co 93.5 0.18 3.9E-06 29.2 4.2 34 88-121 1-34 (60)
60 COG0788 PurU Formyltetrahydrof 93.3 0.68 1.5E-05 39.3 8.7 74 84-159 6-82 (287)
61 cd04894 ACT_ACR-like_1 ACT dom 93.2 0.71 1.5E-05 31.0 6.9 65 87-151 2-67 (69)
62 cd04876 ACT_RelA-SpoT ACT dom 93.2 0.45 9.7E-06 29.0 5.8 34 88-121 1-34 (71)
63 cd04874 ACT_Af1403 N-terminal 92.9 1.2 2.6E-05 28.1 7.8 35 87-121 2-36 (72)
64 COG3830 ACT domain-containing 92.4 0.53 1.1E-05 33.6 5.9 71 86-158 4-75 (90)
65 cd04882 ACT_Bt0572_2 C-termina 92.0 1.2 2.6E-05 28.0 6.8 33 88-120 2-34 (65)
66 cd04883 ACT_AcuB C-terminal AC 91.2 2.7 5.9E-05 27.0 8.4 34 86-119 2-35 (72)
67 PRK04435 hypothetical protein; 91.2 1.5 3.2E-05 33.6 7.7 39 82-120 66-104 (147)
68 PRK08577 hypothetical protein; 90.8 2.5 5.5E-05 31.5 8.5 37 85-121 56-92 (136)
69 PRK11589 gcvR glycine cleavage 90.3 1.2 2.6E-05 35.6 6.7 67 84-154 7-74 (190)
70 cd04880 ACT_AAAH-PDT-like ACT 90.0 3.8 8.3E-05 26.9 8.1 32 89-120 3-34 (75)
71 cd04905 ACT_CM-PDT C-terminal 89.2 4.9 0.00011 26.8 8.5 34 87-120 3-36 (80)
72 cd04879 ACT_3PGDH-like ACT_3PG 88.9 3.9 8.5E-05 25.4 7.5 34 88-121 2-35 (71)
73 cd04889 ACT_PDH-BS-like C-term 88.9 2 4.4E-05 26.6 5.7 34 88-121 1-34 (56)
74 cd04908 ACT_Bt0572_1 N-termina 88.8 1.5 3.3E-05 28.3 5.2 36 87-122 3-38 (66)
75 cd04903 ACT_LSD C-terminal ACT 88.2 1.1 2.4E-05 28.2 4.2 33 88-120 2-34 (71)
76 PF05088 Bac_GDH: Bacterial NA 88.0 4.4 9.4E-05 41.9 10.2 76 85-160 489-569 (1528)
77 PLN03217 transcription factor 87.8 1.9 4.2E-05 30.5 5.4 50 9-58 20-76 (93)
78 KOG3558 Hypoxia-inducible fact 87.1 0.35 7.6E-06 45.7 1.7 37 5-41 55-96 (768)
79 KOG3559 Transcriptional regula 86.6 0.62 1.3E-05 41.9 2.9 39 4-42 9-52 (598)
80 cd04878 ACT_AHAS N-terminal AC 86.5 5.9 0.00013 24.7 8.1 35 87-121 2-36 (72)
81 PRK00227 glnD PII uridylyl-tra 85.2 6.2 0.00013 37.6 9.0 71 83-154 544-615 (693)
82 PRK11589 gcvR glycine cleavage 85.1 7.8 0.00017 31.0 8.4 70 86-158 96-172 (190)
83 PRK07334 threonine dehydratase 85.0 6.7 0.00015 34.5 8.8 35 86-120 327-361 (403)
84 PRK06737 acetolactate synthase 84.7 11 0.00023 25.9 8.6 36 86-121 3-38 (76)
85 KOG2588 Predicted DNA-binding 84.2 0.51 1.1E-05 46.0 1.4 55 4-58 284-340 (953)
86 KOG3560 Aryl-hydrocarbon recep 83.5 0.77 1.7E-05 42.6 2.2 35 7-41 36-75 (712)
87 cd04904 ACT_AAAH ACT domain of 82.6 5.6 0.00012 26.5 5.7 33 88-120 3-35 (74)
88 cd04931 ACT_PAH ACT domain of 82.6 14 0.00031 25.9 9.1 34 86-119 15-48 (90)
89 PRK13562 acetolactate synthase 82.0 7.1 0.00015 27.5 6.1 35 87-121 4-38 (84)
90 cd04884 ACT_CBS C-terminal ACT 81.4 4.1 8.9E-05 26.5 4.7 33 88-120 2-34 (72)
91 COG4747 ACT domain-containing 80.8 12 0.00026 28.3 7.3 40 87-126 5-44 (142)
92 PRK11152 ilvM acetolactate syn 80.7 15 0.00034 25.1 8.1 36 86-121 4-39 (76)
93 CHL00100 ilvH acetohydroxyacid 80.7 12 0.00026 29.6 7.8 70 86-159 3-75 (174)
94 cd04929 ACT_TPH ACT domain of 80.7 15 0.00032 24.8 7.2 29 91-119 6-34 (74)
95 PF13710 ACT_5: ACT domain; PD 79.2 10 0.00022 24.7 5.9 28 94-121 1-28 (63)
96 TIGR00119 acolac_sm acetolacta 79.0 11 0.00024 29.2 7.0 36 87-122 3-38 (157)
97 PF02344 Myc-LZ: Myc leucine z 78.4 2.1 4.6E-05 24.7 2.1 16 5-20 14-29 (32)
98 cd04933 ACT_AK1-AT_1 ACT domai 77.8 19 0.00042 24.5 7.4 40 87-127 3-45 (78)
99 PRK11895 ilvH acetolactate syn 77.5 29 0.00064 27.0 9.0 36 86-121 3-38 (161)
100 cd04932 ACT_AKiii-LysC-EC_1 AC 74.3 23 0.0005 23.7 8.5 58 92-155 11-68 (75)
101 cd04885 ACT_ThrD-I Tandem C-te 73.6 21 0.00047 23.0 6.5 30 89-119 2-31 (68)
102 PF02120 Flg_hook: Flagellar h 72.8 18 0.00039 24.1 6.0 45 76-120 28-78 (85)
103 cd04901 ACT_3PGDH C-terminal A 71.6 8.6 0.00019 24.3 4.0 32 89-120 3-34 (69)
104 cd04902 ACT_3PGDH-xct C-termin 70.2 6.5 0.00014 25.1 3.2 33 88-120 2-34 (73)
105 PRK10872 relA (p)ppGpp synthet 69.7 29 0.00063 33.5 8.6 36 86-121 667-702 (743)
106 cd04930 ACT_TH ACT domain of t 68.6 24 0.00052 25.9 6.3 34 86-119 42-75 (115)
107 TIGR00691 spoT_relA (p)ppGpp s 64.9 42 0.0009 32.0 8.6 36 86-121 611-646 (683)
108 cd04890 ACT_AK-like_1 ACT doma 64.5 31 0.00068 21.4 5.5 35 93-128 11-45 (62)
109 PRK11092 bifunctional (p)ppGpp 64.3 43 0.00094 32.1 8.6 36 86-121 627-662 (702)
110 cd04892 ACT_AK-like_2 ACT doma 63.1 30 0.00066 20.7 7.0 34 87-120 2-38 (65)
111 TIGR01127 ilvA_1Cterm threonin 61.2 1E+02 0.0022 26.6 9.8 35 85-119 305-339 (380)
112 cd04937 ACT_AKi-DapG-BS_2 ACT 61.2 35 0.00075 21.6 5.3 24 94-117 13-36 (64)
113 cd04868 ACT_AK-like ACT domain 60.9 31 0.00068 20.1 5.3 25 95-119 13-37 (60)
114 KOG3910 Helix loop helix trans 59.6 11 0.00023 34.9 3.5 49 3-51 533-586 (632)
115 PRK14623 hypothetical protein; 58.4 51 0.0011 24.0 6.3 25 33-57 3-27 (106)
116 PRK14627 hypothetical protein; 57.5 54 0.0012 23.5 6.3 24 34-57 4-27 (100)
117 PRK08178 acetolactate synthase 57.5 69 0.0015 23.0 7.5 36 86-121 9-44 (96)
118 PRK05974 phosphoribosylformylg 57.5 38 0.00082 23.0 5.2 62 88-155 3-69 (80)
119 PRK14626 hypothetical protein; 56.6 57 0.0012 23.8 6.4 25 33-57 7-31 (110)
120 PRK00227 glnD PII uridylyl-tra 55.8 25 0.00053 33.7 5.3 60 86-153 632-691 (693)
121 PRK14622 hypothetical protein; 55.3 56 0.0012 23.6 6.1 24 33-56 3-26 (103)
122 PRK14625 hypothetical protein; 55.0 60 0.0013 23.8 6.2 25 33-57 4-28 (109)
123 PF11619 P53_C: Transcription 54.9 23 0.00049 23.9 3.6 35 74-108 4-39 (71)
124 cd04922 ACT_AKi-HSDH-ThrA_2 AC 54.5 49 0.0011 20.4 7.3 32 87-118 3-37 (66)
125 KOG4447 Transcription factor T 54.2 7.1 0.00015 30.6 1.3 42 2-43 84-128 (173)
126 PF14689 SPOB_a: Sensor_kinase 54.0 27 0.00058 22.7 3.8 40 5-50 17-56 (62)
127 PRK06382 threonine dehydratase 54.0 1.1E+02 0.0023 26.9 8.9 70 85-160 330-404 (406)
128 TIGR00103 DNA_YbaB_EbfC DNA-bi 53.3 67 0.0014 23.0 6.2 25 33-57 7-31 (102)
129 PRK14624 hypothetical protein; 53.1 67 0.0015 23.8 6.3 25 33-57 8-32 (115)
130 cd04920 ACT_AKiii-DAPDC_2 ACT 52.6 58 0.0013 20.7 6.2 26 94-119 12-37 (63)
131 PRK11899 prephenate dehydratas 52.2 1.5E+02 0.0031 25.1 9.1 59 86-151 195-259 (279)
132 cd04912 ACT_AKiii-LysC-EC-like 52.1 65 0.0014 21.1 7.9 33 87-119 3-38 (75)
133 cd04911 ACT_AKiii-YclM-BS_1 AC 51.5 28 0.00062 23.8 3.8 36 94-130 13-48 (76)
134 PF13840 ACT_7: ACT domain ; P 50.9 56 0.0012 21.1 5.0 32 86-117 7-42 (65)
135 PRK14629 hypothetical protein; 50.5 77 0.0017 22.8 6.1 23 35-57 7-29 (99)
136 PF14992 TMCO5: TMCO5 family 50.2 25 0.00053 30.1 4.0 29 28-56 138-169 (280)
137 cd04906 ACT_ThrD-I_1 First of 49.3 80 0.0017 21.3 6.4 27 86-114 2-28 (85)
138 PRK14621 hypothetical protein; 49.3 82 0.0018 23.1 6.2 24 33-56 6-29 (111)
139 KOG4447 Transcription factor T 49.3 22 0.00047 28.0 3.2 43 4-46 30-78 (173)
140 PRK00587 hypothetical protein; 48.7 86 0.0019 22.5 6.1 25 33-57 3-27 (99)
141 PRK08198 threonine dehydratase 48.1 1.9E+02 0.0041 25.2 9.6 36 84-119 326-361 (404)
142 PRK11898 prephenate dehydratas 47.2 1.5E+02 0.0033 24.9 8.4 35 86-120 197-232 (283)
143 cd04935 ACT_AKiii-DAPDC_1 ACT 46.4 59 0.0013 21.6 4.8 35 93-128 12-46 (75)
144 smart00338 BRLZ basic region l 46.2 35 0.00077 22.0 3.5 43 4-58 4-46 (65)
145 cd04923 ACT_AK-LysC-DapG-like_ 46.1 66 0.0014 19.4 6.8 32 88-119 3-37 (63)
146 COG4492 PheB ACT domain-contai 45.5 45 0.00097 25.7 4.4 36 84-119 71-106 (150)
147 COG1828 PurS Phosphoribosylfor 45.2 76 0.0017 22.2 5.2 63 87-155 3-70 (83)
148 cd04921 ACT_AKi-HSDH-ThrA-like 44.9 84 0.0018 20.3 5.9 27 93-119 12-38 (80)
149 PRK00153 hypothetical protein; 44.5 1E+02 0.0023 21.9 6.1 25 33-57 5-29 (104)
150 PF00170 bZIP_1: bZIP transcri 44.0 36 0.00079 21.9 3.3 22 37-58 25-46 (64)
151 PRK13847 conjugal transfer pro 43.8 35 0.00076 23.3 3.2 37 7-44 10-49 (71)
152 PF14197 Cep57_CLD_2: Centroso 43.4 47 0.001 22.2 3.8 27 30-56 39-65 (69)
153 PRK03762 hypothetical protein; 43.1 1.2E+02 0.0026 21.9 6.2 24 34-57 8-31 (103)
154 COG2061 ACT-domain-containing 42.9 35 0.00075 26.9 3.5 35 86-120 6-40 (170)
155 PF04508 Pox_A_type_inc: Viral 42.9 36 0.00079 18.2 2.5 16 40-55 3-18 (23)
156 cd04934 ACT_AK-Hom3_1 CT domai 42.7 99 0.0021 20.5 5.8 33 94-127 13-45 (73)
157 cd04916 ACT_AKiii-YclM-BS_2 AC 40.9 85 0.0018 19.2 7.2 32 87-118 3-37 (66)
158 cd04919 ACT_AK-Hom3_2 ACT doma 40.5 89 0.0019 19.3 7.4 25 94-118 13-37 (66)
159 PF02700 PurS: Phosphoribosylf 40.4 83 0.0018 21.6 4.8 42 87-128 2-48 (80)
160 COG3978 Acetolactate synthase 39.9 1.3E+02 0.0029 21.1 7.0 63 86-153 4-69 (86)
161 COG2716 GcvR Glycine cleavage 39.5 1E+02 0.0022 24.6 5.7 67 85-154 92-165 (176)
162 cd04936 ACT_AKii-LysC-BS-like_ 39.5 86 0.0019 18.8 6.9 27 93-119 11-37 (63)
163 cd04918 ACT_AK1-AT_2 ACT domai 38.3 1E+02 0.0023 19.5 5.8 27 94-120 12-38 (65)
164 PRK14011 prefoldin subunit alp 38.0 1.1E+02 0.0024 23.4 5.6 24 36-59 8-31 (144)
165 PF09006 Surfac_D-trimer: Lung 37.9 58 0.0013 20.3 3.3 20 40-59 1-20 (46)
166 COG1076 DjlA DnaJ-domain-conta 37.6 37 0.00079 26.4 3.0 47 9-55 125-171 (174)
167 PF06698 DUF1192: Protein of u 37.0 53 0.0012 21.5 3.2 20 40-59 23-42 (59)
168 PLN02678 seryl-tRNA synthetase 36.5 1.3E+02 0.0029 27.3 6.7 52 7-59 41-99 (448)
169 PF06005 DUF904: Protein of un 36.4 84 0.0018 21.2 4.2 25 33-57 13-37 (72)
170 TIGR01268 Phe4hydrox_tetr phen 35.0 3.5E+02 0.0076 24.6 9.8 34 86-119 17-50 (436)
171 COG0317 SpoT Guanosine polypho 34.3 2.4E+02 0.0052 27.3 8.2 36 86-121 628-663 (701)
172 PF10369 ALS_ss_C: Small subun 33.9 1.5E+02 0.0032 19.9 6.1 41 86-131 5-45 (75)
173 PRK12483 threonine dehydratase 33.2 2.9E+02 0.0063 25.5 8.5 68 84-159 344-413 (521)
174 TIGR00656 asp_kin_monofn aspar 31.2 3.5E+02 0.0076 23.4 8.7 36 83-118 258-296 (401)
175 PRK06635 aspartate kinase; Rev 30.9 1.7E+02 0.0037 25.5 6.4 36 84-119 261-297 (404)
176 PRK08210 aspartate kinase I; R 30.7 2.2E+02 0.0048 24.8 7.1 36 84-119 270-306 (403)
177 cd04924 ACT_AK-Arch_2 ACT doma 30.3 1.3E+02 0.0029 18.3 7.3 31 87-117 3-36 (66)
178 cd04891 ACT_AK-LysC-DapG-like_ 29.9 1E+02 0.0022 18.0 3.6 27 93-119 9-35 (61)
179 cd02742 GH20_hexosaminidase Be 29.8 1.6E+02 0.0034 24.8 5.8 65 97-162 16-91 (303)
180 TIGR00302 phosphoribosylformyl 29.7 1.6E+02 0.0036 19.8 4.9 38 89-126 4-46 (80)
181 PF02185 HR1: Hr1 repeat; Int 29.2 74 0.0016 20.8 3.0 52 7-58 2-60 (70)
182 cd06570 GH20_chitobiase-like_1 28.0 1.9E+02 0.0042 24.7 6.1 65 97-162 18-87 (311)
183 cd04871 ACT_PSP_2 ACT domains 27.9 77 0.0017 21.5 3.0 67 89-159 3-80 (84)
184 KOG3898 Transcription factor N 27.7 35 0.00077 28.5 1.5 43 4-46 80-126 (254)
185 PF13399 LytR_C: LytR cell env 27.5 1.5E+02 0.0033 19.8 4.5 26 91-116 10-35 (90)
186 PRK08210 aspartate kinase I; R 27.4 3.7E+02 0.0081 23.4 7.9 65 79-152 333-400 (403)
187 PRK01203 prefoldin subunit alp 27.1 2.2E+02 0.0048 21.5 5.6 25 35-59 4-28 (130)
188 PRK06635 aspartate kinase; Rev 27.0 3.9E+02 0.0085 23.1 8.0 35 83-117 338-375 (404)
189 PRK07431 aspartate kinase; Pro 26.8 3.7E+02 0.0081 24.8 8.1 66 78-152 341-409 (587)
190 COG0077 PheA Prephenate dehydr 26.5 4.1E+02 0.0088 22.7 7.9 59 86-151 195-259 (279)
191 PRK15385 magnesium transport p 26.5 3.7E+02 0.008 22.2 8.2 46 85-130 142-192 (225)
192 PRK14628 hypothetical protein; 26.2 2.7E+02 0.0059 20.6 6.2 20 35-54 23-42 (118)
193 PF07524 Bromo_TP: Bromodomain 26.2 43 0.00094 22.3 1.5 20 94-113 56-75 (77)
194 COG2716 GcvR Glycine cleavage 26.0 85 0.0018 25.0 3.3 61 86-150 6-67 (176)
195 PRK09084 aspartate kinase III; 25.5 2.7E+02 0.0059 24.9 6.8 36 84-119 305-343 (448)
196 cd00584 Prefoldin_alpha Prefol 25.3 2.4E+02 0.0053 20.3 5.5 22 83-104 76-97 (129)
197 PRK06349 homoserine dehydrogen 25.2 4.1E+02 0.0089 23.6 7.9 34 85-118 348-381 (426)
198 cd04913 ACT_AKii-LysC-BS-like_ 24.6 1.8E+02 0.0038 17.8 7.2 26 92-117 9-34 (75)
199 PHA03386 P10 fibrous body prot 24.5 1.7E+02 0.0037 21.0 4.2 32 27-58 1-32 (94)
200 PRK06291 aspartate kinase; Pro 24.4 5.2E+02 0.011 23.2 8.9 33 86-118 322-357 (465)
201 PRK05431 seryl-tRNA synthetase 23.8 3.3E+02 0.0071 24.3 7.0 54 7-60 36-95 (425)
202 PF08826 DMPK_coil: DMPK coile 23.7 1.9E+02 0.004 19.0 4.1 28 30-57 31-58 (61)
203 PF07544 Med9: RNA polymerase 23.2 2.5E+02 0.0055 19.1 5.7 44 9-54 31-75 (83)
204 cd04915 ACT_AK-Ectoine_2 ACT d 23.1 2.1E+02 0.0046 18.2 5.9 26 95-120 14-39 (66)
205 PRK10820 DNA-binding transcrip 23.1 1.5E+02 0.0032 27.1 4.7 37 87-123 2-38 (520)
206 PF06305 DUF1049: Protein of u 22.9 88 0.0019 19.9 2.4 16 40-55 50-65 (68)
207 PF01166 TSC22: TSC-22/dip/bun 22.8 1.7E+02 0.0036 19.2 3.6 19 39-57 22-40 (59)
208 TIGR00414 serS seryl-tRNA synt 22.8 2.5E+02 0.0055 25.0 6.0 53 7-59 38-97 (418)
209 PRK13581 D-3-phosphoglycerate 22.4 5E+02 0.011 23.8 8.0 52 79-130 446-499 (526)
210 cd06568 GH20_SpHex_like A subg 22.2 2.8E+02 0.006 23.8 6.0 65 97-162 18-94 (329)
211 PLN02320 seryl-tRNA synthetase 22.1 3.4E+02 0.0075 25.1 6.8 53 7-59 101-158 (502)
212 cd00890 Prefoldin Prefoldin is 22.0 3E+02 0.0064 19.5 5.4 12 83-94 76-87 (129)
213 PF02370 M: M protein repeat; 22.0 1.4E+02 0.003 15.6 3.0 16 41-56 4-19 (21)
214 PF12180 EABR: TSG101 and ALIX 21.9 1E+02 0.0022 18.2 2.2 13 38-50 23-35 (35)
215 PLN02551 aspartokinase 21.6 2.6E+02 0.0057 25.8 6.0 35 85-119 366-403 (521)
216 PF07716 bZIP_2: Basic region 21.4 1.8E+02 0.004 17.9 3.6 20 38-57 25-44 (54)
217 PRK09034 aspartate kinase; Rev 21.4 6E+02 0.013 22.8 8.2 67 79-153 379-449 (454)
218 PRK10622 pheA bifunctional cho 21.3 5.7E+02 0.012 22.6 8.8 54 91-151 303-362 (386)
219 COG1707 ACT domain-containing 21.3 1.6E+02 0.0034 23.8 3.9 32 88-119 5-36 (218)
220 PF08644 SPT16: FACT complex s 20.4 1.5E+02 0.0032 23.0 3.6 25 33-57 80-104 (152)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.30 E-value=3e-12 Score=81.55 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=43.1
Q ss_pred ccHHHHHHHHhHhhHHhhhccC----CCCccccchhHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLTN----SKSVKKSSIIMDSLLYVCKLKLKLE 48 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv~----~~KmDKaSIl~dAI~YIkeLq~~v~ 48 (164)
+.||+||.+||+.|..|+++++ ..|+||++||..||+||+.|+.+++
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999993 5789999999999999999999875
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.22 E-value=1.2e-11 Score=80.29 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=42.5
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CC---CCccccchhHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NS---KSVKKSSIIMDSLLYVCKLKLKL 47 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~---~KmDKaSIl~dAI~YIkeLq~~v 47 (164)
+.||+||.+||+.|..|++++ .. .|+||++||..||+||+.|+..+
T Consensus 10 ~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 10 LRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999 44 89999999999999999999875
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.06 E-value=1.6e-10 Score=74.39 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=38.9
Q ss_pred cHHHHHHHHhHhhHHhhhcc--C----CCCccccchhHHHHHHHHHHH
Q 031198 3 SRLQRRRALHRKLHILRTLT--N----SKSVKKSSIIMDSLLYVCKLK 44 (164)
Q Consensus 3 ser~RR~kln~rl~~LRslv--~----~~KmDKaSIl~dAI~YIkeLq 44 (164)
.||+||.+||+.|..|+.++ . ..|+||++||..||+||++||
T Consensus 8 ~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 8 RERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 58899999999999999999 3 378999999999999999997
No 4
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.59 E-value=6.3e-07 Score=61.82 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=55.0
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCC----HHHHHHHHHHHHH
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALE----ARDVAQVILKATE 153 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~----~~~ik~al~~ai~ 153 (164)
+|.|.|+.+||+|.+|..+|-.+|++|.+|.|++.+.-..+++-+...++..+. .+.|+++|..++.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999998888887766443455553 3567777777765
No 5
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.52 E-value=1.3e-06 Score=59.86 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=52.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKAT 152 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai 152 (164)
.+|+|.++.+||+|.+|..+|..+||+|..|.|++.+..+.+++-+...++..+.-+.-.+.|.+++
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999888888776543455564334444444444
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.49 E-value=1.7e-06 Score=59.21 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=53.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec-ccceEEEEEeccCCCCCCCC---HHHHHHHHHHHHHh
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC-NYYFAMDAIAVPQNPQQALE---ARDVAQVILKATEK 154 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~-~~~f~l~~~~~~~~~~~~~~---~~~ik~al~~ai~~ 154 (164)
++++|.|+.+||+|.++..+|..+||+|++|+|++ .++++++++.+...++...+ .+.++++|.+++++
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 47899999999999999999999999999999996 68889888876432222222 34466666666654
No 7
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.46 E-value=3.1e-06 Score=57.13 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=50.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKAT 152 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai 152 (164)
..|.|.|+.+||+|.++..+|..+||+|++|.|.+. ++++++++.+...++.....+.-.+.|.+.|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L 69 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHH
Confidence 357899999999999999999999999999999877 7899998876432333343333334444444
No 8
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.45 E-value=2.9e-06 Score=58.56 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=53.9
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEee--cccceEEEEEeccCCCCCCC-C---HHHHHHHHHHHHHh
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVS--CNYYFAMDAIAVPQNPQQAL-E---ARDVAQVILKATEK 154 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs--~~~~f~l~~~~~~~~~~~~~-~---~~~ik~al~~ai~~ 154 (164)
+|.|.|+.+||+|.+|..+|..+||+|..|.|+ +.+.-+.+++-+ ..++..+ + ...++++|..++..
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999 988777777766 3234333 3 46778888877654
No 9
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.26 E-value=1.4e-05 Score=54.19 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=54.2
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKAT 152 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai 152 (164)
.|-|.|+.+||+|.++..+|..+||+|++|++.+. ++++++++.+-. ...=+...+.++|++++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d--~~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG--WKRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec--CCccchHHHHHHHHHhh
Confidence 46789999999999999999999999999999865 889999888753 33346678888988876
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=2.1e-05 Score=53.40 Aligned_cols=66 Identities=8% Similarity=0.046 Sum_probs=51.7
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCC-CCCC-C---HHHHHHHHHHHH
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNP-QQAL-E---ARDVAQVILKAT 152 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~-~~~~-~---~~~ik~al~~ai 152 (164)
+|+|.++.+||+|.+|..+|..+|++|+.|++++.++.+++.+.+...+ +... + .+.+++.|.+++
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999888888877754312 2222 2 356666666655
No 11
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=0.00011 Score=48.26 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=39.8
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEec
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAV 131 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~ 131 (164)
.|.|.|+.++|+|.+|+.+|.+++++|.++++.+.+++.+..+..
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i 46 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYV 46 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEE
Confidence 588999999999999999999999999999999876677766554
No 12
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.89 E-value=0.00018 Score=48.44 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=50.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATE 153 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~ 153 (164)
..|.|.++.++|+|.+|..+|.++|++|+++.+.+.+...+..+.+...++...+. .--+.|.++|+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHhc
Confidence 46788999999999999999999999999999988877777766653323333443 34455666665
No 13
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=97.76 E-value=5.2e-05 Score=67.07 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=40.6
Q ss_pred HHHHHHHHhHhhHHhhhccCC-----CCccccchhHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLTNS-----KSVKKSSIIMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv~~-----~KmDKaSIl~dAI~YIkeLq~~v~~ 49 (164)
|||||+++|++...|--||+- .+-.|.+||.-+.+||++||+..+.
T Consensus 241 ERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 241 ERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 788999999999999999932 3667999999999999999988773
No 14
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.57 E-value=0.00048 Score=66.39 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=61.2
Q ss_pred CcceEEEEE--cCeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCC---HHHHHHHH
Q 031198 74 PKEVKVEKI--GENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALE---ARDVAQVI 148 (164)
Q Consensus 74 ~~~V~V~~~--~~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~---~~~ik~al 148 (164)
|+.|.+... +.-..|+|.|..+||+|.+|..+|..+||+|.+|.|+|.+.-+.+++-+...++..++ .+.|+++|
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L 874 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRL 874 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHH
Confidence 444444432 2237799999999999999999999999999999999998887777766433455555 45677777
Q ss_pred HHHHHh
Q 031198 149 LKATEK 154 (164)
Q Consensus 149 ~~ai~~ 154 (164)
..++..
T Consensus 875 ~~~l~~ 880 (884)
T PRK05007 875 TEALNP 880 (884)
T ss_pred HHHHhh
Confidence 777643
No 15
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.50 E-value=0.0011 Score=63.91 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCcceEEEEEc--CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCC-C---HHHHHH
Q 031198 73 VPKEVKVEKIG--ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQAL-E---ARDVAQ 146 (164)
Q Consensus 73 ~~~~V~V~~~~--~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~-~---~~~ik~ 146 (164)
.|+.|.+.... +...|.|.+..+||+|.+|..+|..+||+|+.|.|++.++++++++.+...++..+ + .+.|++
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~ 879 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQD 879 (895)
T ss_pred CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 44555555542 33779999999999999999999999999999999999999999888754334433 3 356888
Q ss_pred HHHHHHHh
Q 031198 147 VILKATEK 154 (164)
Q Consensus 147 al~~ai~~ 154 (164)
+|.+++.+
T Consensus 880 ~L~~~L~~ 887 (895)
T PRK00275 880 AICEQLDA 887 (895)
T ss_pred HHHHHHhc
Confidence 88888744
No 16
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.47 E-value=0.0013 Score=63.35 Aligned_cols=80 Identities=10% Similarity=0.099 Sum_probs=61.5
Q ss_pred CCcceEEEEEcC-e-EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCC---HHHHHHH
Q 031198 73 VPKEVKVEKIGE-N-FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALE---ARDVAQV 147 (164)
Q Consensus 73 ~~~~V~V~~~~~-~-~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~---~~~ik~a 147 (164)
.|+.|.+..... + ..|.|.+..+||+|.+|..+|..+||+|+.|.|+|.++.+++++.+...++...+ ...|+++
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~ 861 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDA 861 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHH
Confidence 455666655422 3 7799999999999999999999999999999999999999988876442333332 3567777
Q ss_pred HHHHH
Q 031198 148 ILKAT 152 (164)
Q Consensus 148 l~~ai 152 (164)
|..++
T Consensus 862 L~~~l 866 (869)
T PRK04374 862 LCACL 866 (869)
T ss_pred HHHHh
Confidence 77666
No 17
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.45 E-value=0.0012 Score=42.20 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=45.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccc---eEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYY---FAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~---f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
+.|.|.|+.+||+|.++.+.|-++|++|.++.+..... +.+-... ....+.+.+.++|.+.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIV-----VDEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEE-----EEGHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEE-----CCCCCHHHHHHHHHcc
Confidence 46889999999999999999999999999998887643 2222222 1234566666666654
No 18
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.36 E-value=0.00034 Score=58.30 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhHhhHHhhhcc--CC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT--NS-KSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv--~~-~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
|.||||=+|.||-|.+|.--+ |. ...-|.=||-.||.||..||.-++++.+....+
T Consensus 124 MRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 124 MRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 457767799999999998866 44 778999999999999999999999887654433
No 19
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.33 E-value=0.0015 Score=62.76 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=58.1
Q ss_pred CCcceEEEEEc-C-eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCH---HHHHHH
Q 031198 73 VPKEVKVEKIG-E-NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEA---RDVAQV 147 (164)
Q Consensus 73 ~~~~V~V~~~~-~-~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~---~~ik~a 147 (164)
.|+.|.+.... + -..|+|.+..+||+|.+|..+|..+|++|..|.|+|.+.-+.+++-+...++..++. ..|+++
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~ 848 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSR 848 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHH
Confidence 34444443332 2 277999999999999999999999999999999999987777766654334555543 556666
Q ss_pred HHHHH
Q 031198 148 ILKAT 152 (164)
Q Consensus 148 l~~ai 152 (164)
|..++
T Consensus 849 L~~~l 853 (854)
T PRK01759 849 LLSNL 853 (854)
T ss_pred HHHHh
Confidence 66554
No 20
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.24 E-value=0.0032 Score=60.98 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=62.8
Q ss_pred CCcceEEEEEc--CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCC-C---HHHHHH
Q 031198 73 VPKEVKVEKIG--ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQAL-E---ARDVAQ 146 (164)
Q Consensus 73 ~~~~V~V~~~~--~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~-~---~~~ik~ 146 (164)
.|+.|.+.... +...|.|.|..+||+|.+|..+|..+|++|.+|.|+|.+..+++.+.+...++..+ + .+.|++
T Consensus 829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~ 908 (931)
T PRK05092 829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRR 908 (931)
T ss_pred CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHH
Confidence 34556555542 23789999999999999999999999999999999998888888776643233333 2 467888
Q ss_pred HHHHHHHh
Q 031198 147 VILKATEK 154 (164)
Q Consensus 147 al~~ai~~ 154 (164)
+|..++..
T Consensus 909 ~L~~~L~~ 916 (931)
T PRK05092 909 ALLAALAE 916 (931)
T ss_pred HHHHHhcC
Confidence 88888854
No 21
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.24 E-value=0.0029 Score=60.27 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=57.5
Q ss_pred CcceEEEEEcC--eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 74 PKEVKVEKIGE--NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 74 ~~~V~V~~~~~--~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
|+.|.+..... -..|.|.|..+||+|.+|..+|..+|++|++|.|+|.++.+++++-+...++..++.+ .+.|.++
T Consensus 694 ~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~ 771 (774)
T PRK03381 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQA 771 (774)
T ss_pred CcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHH
Confidence 34444444322 3789999999999999999999999999999999999999999887754344444322 4555554
Q ss_pred H
Q 031198 152 T 152 (164)
Q Consensus 152 i 152 (164)
+
T Consensus 772 L 772 (774)
T PRK03381 772 V 772 (774)
T ss_pred h
Confidence 4
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.20 E-value=0.007 Score=39.06 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=37.0
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEe
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIA 130 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~ 130 (164)
.|.|.|+.++|+|.+++.+|.++|++|.++.+.+.+........
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~ 45 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFY 45 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEE
Confidence 47899999999999999999999999999998876545444443
No 23
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.19 E-value=0.0025 Score=60.64 Aligned_cols=71 Identities=18% Similarity=0.062 Sum_probs=59.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHh
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATEK 154 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~ 154 (164)
+.+.|.|.|+.+||++.+|..+|..+|++|++|+|.+.+++.++++.+....+.....+.+++.|.+++..
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALDG 668 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHcC
Confidence 45889999999999999999999999999999999988888888877644233334568899999988876
No 24
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.18 E-value=0.0023 Score=43.46 Aligned_cols=70 Identities=7% Similarity=0.107 Sum_probs=51.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVE 158 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~ 158 (164)
.++|.+.++.+||++..+..+|-+.|.++.+++.+.. +.|++-..... . .-+.+.++.+|.+...+.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~---~-~~~~~~l~~~L~~l~~~~~l~ 72 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI---P-EDSLERLESALEELAEELGLD 72 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE---S-HHHHHHHHHHHHHHHHHTT-E
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe---C-cccHHHHHHHHHHHHHHCCcE
Confidence 3789999999999999999999999999999999887 45665544321 1 226788888888887777654
No 25
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.16 E-value=0.0029 Score=60.89 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=57.9
Q ss_pred CcceEEEEEc--CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCC---HHHHHHHH
Q 031198 74 PKEVKVEKIG--ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALE---ARDVAQVI 148 (164)
Q Consensus 74 ~~~V~V~~~~--~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~---~~~ik~al 148 (164)
|+.|.+.... +-..|.|.|+.+||+|.+|..+|..+||+|+.|.|++.++.+++++.+.. .+ ..+ .+.|+++|
T Consensus 773 ~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~-~~-~~~~~~~~~l~~~L 850 (856)
T PRK03059 773 TPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG-SG-LSDNRLQIQLETEL 850 (856)
T ss_pred CceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC-CC-CCCHHHHHHHHHHH
Confidence 3445444432 23779999999999999999999999999999999999999999888732 11 122 45667777
Q ss_pred HHHH
Q 031198 149 LKAT 152 (164)
Q Consensus 149 ~~ai 152 (164)
.+++
T Consensus 851 ~~~L 854 (856)
T PRK03059 851 LDAL 854 (856)
T ss_pred HHHh
Confidence 6665
No 26
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=97.15 E-value=0.00069 Score=54.35 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=46.8
Q ss_pred cHHHHHHHHhHhhHHhhhcc-C------C-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 3 SRLQRRRALHRKLHILRTLT-N------S-KSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 3 ser~RR~kln~rl~~LRslv-~------~-~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
.|++||+.+|.-+..|.-|| . + .|..||-||.-+|+||..|.+...+-+.|...+
T Consensus 69 aEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 69 AEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999998 1 2 277899999999999999998888777766544
No 27
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.15 E-value=0.00039 Score=66.06 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=41.2
Q ss_pred cHHHHHHHHhHhhHHhhhcc--CC---CCccccchhHHHHHHHHHHHHH
Q 031198 3 SRLQRRRALHRKLHILRTLT--NS---KSVKKSSIIMDSLLYVCKLKLK 46 (164)
Q Consensus 3 ser~RR~kln~rl~~LRslv--~~---~KmDKaSIl~dAI~YIkeLq~~ 46 (164)
+|+|||+|+|.-+..|.+|| ++ -||||..||.-||.+|+.+++.
T Consensus 27 ~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 27 IEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999 66 8999999999999999999885
No 28
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.10 E-value=0.00042 Score=57.83 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=41.0
Q ss_pred HHHHHHHHhHhhHHhhhcc----C---C--CCccccchhHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLT----N---S--KSVKKSSIIMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv----~---~--~KmDKaSIl~dAI~YIkeLq~~v~~ 49 (164)
||+||.++|+=|..|+.|| . . +|++||=||.=+++|+++|+..-..
T Consensus 40 EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 40 EKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 7889999999999999998 1 2 8999999999999999999987553
No 29
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.08 E-value=0.011 Score=39.54 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=52.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeec---ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSC---NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~---~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
|.|.|+.+||++.+|...|-+.|+++.+.+..+ ...|.+.....- +....+...++.++...-.+.+..|
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~l~~~l~~l~~~l~~~~ 74 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFEL--EGFDLSREALEAAFAPVAAEFDMDW 74 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHHHHcCCcC
Confidence 789999999999999999999999999987664 244666555421 1113678999999888766655543
No 30
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.07 E-value=0.0069 Score=58.31 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=62.6
Q ss_pred CcceEEEEE--cCeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec-ccceEEEEEeccCCCCCCCCH---HHHHHH
Q 031198 74 PKEVKVEKI--GENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC-NYYFAMDAIAVPQNPQQALEA---RDVAQV 147 (164)
Q Consensus 74 ~~~V~V~~~--~~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~-~~~f~l~~~~~~~~~~~~~~~---~~ik~a 147 (164)
++-|.+... .+...|.|.|+.++|+|.+|..+|..+||+|++|.|.+ .+++.++++.+...++..++. +.|+++
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~ 743 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQA 743 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 344555443 23477999999999999999999999999999999977 688999988765433444443 357888
Q ss_pred HHHHHHhc
Q 031198 148 ILKATEKQ 155 (164)
Q Consensus 148 l~~ai~~~ 155 (164)
|.+++...
T Consensus 744 L~~aL~~~ 751 (854)
T PRK01759 744 LTKALNTN 751 (854)
T ss_pred HHHHHcCC
Confidence 88888654
No 31
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.06 E-value=0.0071 Score=58.44 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=62.5
Q ss_pred CcceEEEEE--cCeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCH---HHHHHH
Q 031198 74 PKEVKVEKI--GENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEA---RDVAQV 147 (164)
Q Consensus 74 ~~~V~V~~~--~~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~---~~ik~a 147 (164)
++-|.+... ++...|.|.|+.++|+|.+|..+|..+||+|++|.|.+. ++++++++.+...++...+. +.|++.
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~ 767 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKA 767 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHH
Confidence 344555443 234789999999999999999999999999999999876 56998888764433444443 458888
Q ss_pred HHHHHHhc
Q 031198 148 ILKATEKQ 155 (164)
Q Consensus 148 l~~ai~~~ 155 (164)
|.+++...
T Consensus 768 L~~aL~~~ 775 (884)
T PRK05007 768 LEQALTQS 775 (884)
T ss_pred HHHHHcCC
Confidence 98888654
No 32
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.01 E-value=0.0044 Score=59.43 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=49.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCC---HHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALE---ARDVAQVILKAT 152 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~---~~~ik~al~~ai 152 (164)
..|.|.|..+||+|.+|..+|..+|++|.+|.|++.+.-..+.+.+....+..++ .+.|+++|..++
T Consensus 780 t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 780 TIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999976544444433221233333 456666666654
No 33
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.98 E-value=0.0058 Score=58.62 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=59.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee-cccceEEEEEeccCCCCCCCC----HHHHHHHHHHHHHhcc
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS-CNYYFAMDAIAVPQNPQQALE----ARDVAQVILKATEKQA 156 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs-~~~~f~l~~~~~~~~~~~~~~----~~~ik~al~~ai~~~~ 156 (164)
+...|.|.++.++|+|.+|..+|..+||+|++|.|+ +.++++++++.+...++...+ .+.|++.|.+++....
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~ 744 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA 744 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 347799999999999999999999999999999999 568899998877543344332 4568889999987643
No 34
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.94 E-value=0.0087 Score=40.70 Aligned_cols=69 Identities=9% Similarity=0.076 Sum_probs=52.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCC
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVE 158 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~ 158 (164)
+.|.+.|+.+||+..+|.+.|.+.|.++.+++.... +.|.+-..... + ..+...+++.+...-.+.+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~---~-~~~~~~l~~~l~~~~~~~~l~ 71 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG---S-WDAIAKLEAALPGLARRLDLT 71 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe---c-cccHHHHHHHHHHHHHHcCCE
Confidence 578999999999999999999999999999887654 45655544422 1 246788888887765554543
No 35
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.90 E-value=0.0076 Score=41.74 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=55.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
+.|.+.|+.+||++..|.+.|-..|+++.+.+..+. +.|.+...... .+...+...++..+...-.+.+.++
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~--~~~~~~~~~L~~~l~~l~~~~~l~~ 74 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI--SESNLDFAELQEELEELGKELGVKI 74 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe--CCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 578999999999999999999999999999876554 45666654432 1224678999999988776766554
No 36
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.87 E-value=0.014 Score=39.18 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=53.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-------cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-------YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-------~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
|.|.|+.++|++.+|-+.|...|+++.+.+..+. +.|.+.....- ....+...++..+...-.+.+..+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~---p~~~~~~~l~~~l~~l~~~~~~~~ 77 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL---PAGTDLDALREELEELCDDLNVDI 77 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec---CCCCCHHHHHHHHHHHHHHhcceE
Confidence 6799999999999999999999999999887653 34655544422 234678999999998877777654
No 37
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.77 E-value=0.0096 Score=57.38 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee-cccceEEEEEeccCCCCCCC---CHHHHHHHHHHHHHhc
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS-CNYYFAMDAIAVPQNPQQAL---EARDVAQVILKATEKQ 155 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs-~~~~f~l~~~~~~~~~~~~~---~~~~ik~al~~ai~~~ 155 (164)
+...|-|.|+.+||++.++..+|..+||+|++|+|. +.++++++++.+...++... -.+.|++.|.+++...
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCC
Confidence 347799999999999999999999999999999995 46899999888754223311 2566788888887653
No 38
>PRK00194 hypothetical protein; Validated
Probab=96.76 E-value=0.012 Score=40.67 Aligned_cols=73 Identities=10% Similarity=0.126 Sum_probs=53.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.|.|+.+||++.++.+.|-+.|++|.+.+..+. +.|.+.....- .....+...+++.|...-...+.++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~l~~l~~~~~~~~ 76 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI--SESKKDFAELKEELEELGKELGVKI 76 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe--cCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 4679999999999999999999999999999775543 44555433311 1223567889888888766666543
No 39
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.69 E-value=0.014 Score=56.54 Aligned_cols=72 Identities=10% Similarity=0.217 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee-cccceEEEEEeccCCCCCCC--C---HHHHHHHHHHHHHhc
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS-CNYYFAMDAIAVPQNPQQAL--E---ARDVAQVILKATEKQ 155 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs-~~~~f~l~~~~~~~~~~~~~--~---~~~ik~al~~ai~~~ 155 (164)
+...|.|.|+.+||+|.++..+|..+||+|++|+|. +.+++.++++.+-..++... + .+.|++.|.+++...
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 347799999999999999999999999999999985 45889999887754233332 2 345788888887543
No 40
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.01 Score=56.74 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=57.9
Q ss_pred CCcceEEEEE--cCeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHH
Q 031198 73 VPKEVKVEKI--GENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILK 150 (164)
Q Consensus 73 ~~~~V~V~~~--~~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ 150 (164)
.||+|....- .+...+++.+..+||+|..+...|..++|++++|.|++++.=+.+++.+....+..+ -.++++.+.+
T Consensus 777 i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l-~~~~~q~l~~ 855 (867)
T COG2844 777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL-NAELRQSLLQ 855 (867)
T ss_pred cCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC-CHHHHHHHHH
Confidence 3455555443 234779999999999999999999999999999999999765555554432234445 3456666666
Q ss_pred HHHh
Q 031198 151 ATEK 154 (164)
Q Consensus 151 ai~~ 154 (164)
.+..
T Consensus 856 ~ll~ 859 (867)
T COG2844 856 RLLE 859 (867)
T ss_pred HHHH
Confidence 6554
No 41
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.61 E-value=0.025 Score=54.99 Aligned_cols=82 Identities=16% Similarity=0.034 Sum_probs=61.9
Q ss_pred CCcceEEEEEc--CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec-ccceEEEEEeccCCCCCCC----CHHHHH
Q 031198 73 VPKEVKVEKIG--ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC-NYYFAMDAIAVPQNPQQAL----EARDVA 145 (164)
Q Consensus 73 ~~~~V~V~~~~--~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~-~~~f~l~~~~~~~~~~~~~----~~~~ik 145 (164)
.|+-|.+.... +...|.|.|+.++|+|.+|..+|..+|++|++|+|.+ .++|+++++.+...++... ..+.|.
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 34455555542 4588999999999999999999999999999999987 5889999776533223221 366788
Q ss_pred HHHHHHHHh
Q 031198 146 QVILKATEK 154 (164)
Q Consensus 146 ~al~~ai~~ 154 (164)
++|.+++.+
T Consensus 798 ~~L~~~l~~ 806 (931)
T PRK05092 798 KAIEDALSG 806 (931)
T ss_pred HHHHHHHcC
Confidence 888888854
No 42
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=96.58 E-value=0.0016 Score=55.64 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=39.5
Q ss_pred HHHHHHHHhHhhHHhhhcc---CCCCccccchhHHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLT---NSKSVKKSSIIMDSLLYVCKLKLKLEAI 50 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv---~~~KmDKaSIl~dAI~YIkeLq~~v~~L 50 (164)
||+|=.-+|.-|..||+|+ .--|..||.||..+.+||.+|+..--+|
T Consensus 68 ERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 68 ERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 4555578999999999999 4589999999999999999998765443
No 43
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.026 Score=37.93 Aligned_cols=69 Identities=6% Similarity=0.104 Sum_probs=54.2
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCC
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVE 158 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~ 158 (164)
+|.|.++.+||++.++...|-+.|+++.+.+-++. +.|++.....- ....+.+.++.+|.......+.+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~---p~~~~~~~l~~~l~~l~~~l~l~ 70 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI---PDSADSEALLKDLLFKAHELGLQ 70 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc---CCCCCHHHHHHHHHHHHHHcCce
Confidence 37899999999999999999999999999876654 45777654421 23367899999998887776654
No 44
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.33 E-value=0.022 Score=55.03 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=57.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec-ccceEEEEEeccCCCCC-CCCHHHHHHHHHHHHHhc
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC-NYYFAMDAIAVPQNPQQ-ALEARDVAQVILKATEKQ 155 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~-~~~f~l~~~~~~~~~~~-~~~~~~ik~al~~ai~~~ 155 (164)
+...|-|.|+.++|++.+|..+|..+||+|++|+|.+ .++++++++.+....+. .-....|++.|.+++...
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 4477999999999999999999999999999999987 48899998876542222 223556888888888663
No 45
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.94 E-value=0.054 Score=46.08 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=56.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEe---ecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATV---SCNYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~v---s~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.|.|+.++|+..+|-+.|-+.|+++++.+- +..+.|.+-...... .....+...+++++...-.+.|.+|
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~~~~~l~~~l~~l~~~l~l~~ 85 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAASVDTFRQEFQPVAEKFDMQW 85 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCCCHHHHHHHHHHHHHHhCCeE
Confidence 3789999999999999999999999999999876 333555554333211 1235788999999998877777654
No 46
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.93 E-value=0.12 Score=34.77 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=31.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
+.|+|.|..++|+|.+|..++.+.|.++.+.++...
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~ 42 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTN 42 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE-
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEe
Confidence 678999999999999999999999999999998874
No 47
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.90 E-value=0.12 Score=33.37 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=47.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc---cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCCCC
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN---YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEWQP 161 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~---~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~~~ 161 (164)
++|+|.+..++|.+.+++..|.+.+.++.+.+.... +...+..... ..+...+++.+.+.=.-++.-..|
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~------~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH------ETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc------cCCHHHHHHHHHHHHcCccccCCc
Confidence 578999999999999999999999999999876543 2233443321 245666666665543334544444
No 48
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=95.87 E-value=0.023 Score=47.00 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=45.2
Q ss_pred HHHHHHHHhHhhHHhhhccCC----CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLTNS----KSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv~~----~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
||+||..|.+.|..|+=.|+. +.-+.++||.-|..||+.|+.+..+.+..++.+.
T Consensus 67 Ek~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~ 125 (232)
T KOG2483|consen 67 EKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLS 125 (232)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 678999999999999999822 3333689999999999999999888777665543
No 49
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.85 E-value=0.096 Score=33.39 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=42.6
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc------cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCC
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN------YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVE 158 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~------~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~ 158 (164)
+.|.++.+||.|.+|++.|.+.|++|.+.+.... +...+.... + ..+.+++ +.+.+.|.+.|+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v-~-----~~~~~~l-~~l~~~l~~~g~~ 70 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTL-E-----TRGAEHI-EEIIAALREAGYD 70 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEE-E-----eCCHHHH-HHHHHHHHHcCCE
Confidence 4688999999999999999999999998775532 222333222 1 1233333 4666667776664
No 50
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=95.30 E-value=0.17 Score=42.92 Aligned_cols=72 Identities=11% Similarity=0.247 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc---cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN---YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~---~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.|.|+.+||+..++...|-++|+++.+.+..+. +-|.+.+...- ....+...+++++...-...+.++
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~---p~~~~~~~L~~~L~~l~~~l~l~i 81 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS---EEGLDEDALRAGFAPIAARFGMQW 81 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec---CCCCCHHHHHHHHHHHHHHhCcEE
Confidence 4789999999999999999999999999999887532 46777655421 345779999999998877766544
No 51
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.06 E-value=0.18 Score=42.63 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=53.6
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc---cceEEEEEeccCCCCCCCCHHHHHHHHHH-HHHhccCCC
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN---YYFAMDAIAVPQNPQQALEARDVAQVILK-ATEKQAVEW 159 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~---~~f~l~~~~~~~~~~~~~~~~~ik~al~~-ai~~~~~~~ 159 (164)
.|.|.|+.++|+..+|-+.|-+.|.++++.+-+.. +.|.|-....- .+...+..++++++.. .-...+..|
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~--~~~~~~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL--EGFRLEESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHHHHHhCCEE
Confidence 57899999999999999999999999999886653 56776554421 1224688999999988 444445443
No 52
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=95.02 E-value=0.025 Score=46.20 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=43.1
Q ss_pred HHHHHHHHhHhhHHhhhcc----C-CCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLT----N-SKSVKKSSIIMDSLLYVCKLKLKLEAIKRE 53 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv----~-~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e 53 (164)
||+|=+.+|..|..||..+ . .+|..|..+|.-||.||+-|+.-++.-+..
T Consensus 117 ER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 117 ERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 6666689999999999988 3 689999999999999999999987765543
No 53
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.81 E-value=0.25 Score=41.85 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec--c-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC--N-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~--~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.+.|+.+||++..|.+.|-++|+++.+.+.++ . +-|.+.....- +....+.+.++++|...-...+.++
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~~~~~L~~~L~~l~~~l~l~i 81 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLIFNLETLRADFAALAEEFEMDW 81 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHHHHhCCEE
Confidence 478999999999999999999999999999988776 4 45766655421 1234568899999988777666543
No 54
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.2 Score=48.17 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=61.2
Q ss_pred EEEEEcCeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCH---HHHHHHHHHHHH
Q 031198 78 KVEKIGENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEA---RDVAQVILKATE 153 (164)
Q Consensus 78 ~V~~~~~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~---~~ik~al~~ai~ 153 (164)
.++...++.-|-|.|+.+|+++..+..++...|++|+.|+|-++ ++|.++++.+.+-++..++. ..+.+.+.+++.
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~ 756 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALL 756 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHh
Confidence 44444677999999999999999999999999999999998765 89999998875433444442 234456666666
Q ss_pred hccCC
Q 031198 154 KQAVE 158 (164)
Q Consensus 154 ~~~~~ 158 (164)
..-..
T Consensus 757 s~~~~ 761 (867)
T COG2844 757 SGKAQ 761 (867)
T ss_pred cCCCC
Confidence 54444
No 55
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.48 E-value=0.49 Score=31.45 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=32.4
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
.|+|.|..++|+|.+|+.+|.+.+.++.+.++...
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 58899999999999999999999999999998764
No 56
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.20 E-value=0.36 Score=31.56 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=31.0
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
|+|.+..+||.|.+|+.+|.+.|.+|.+.+....
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~ 35 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ 35 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe
Confidence 6899999999999999999999999999887654
No 57
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.73 E-value=0.89 Score=29.33 Aligned_cols=34 Identities=6% Similarity=0.161 Sum_probs=30.1
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
.+.+.++.+||.|.++++.|.+.|+++.+.....
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~ 36 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILE 36 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence 5788999999999999999999999999876544
No 58
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.57 E-value=0.5 Score=30.91 Aligned_cols=43 Identities=7% Similarity=-0.042 Sum_probs=34.1
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc--cceEEEEE
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN--YYFAMDAI 129 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~--~~f~l~~~ 129 (164)
.+.|.++.++|.|.+|++.|.+.+.++...+.+.. +.+.+...
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~ 46 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTIS 46 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEE
Confidence 47889999999999999999999999999876542 33444433
No 59
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.49 E-value=0.18 Score=29.16 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=30.2
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
|.+.|+..+|.+.++++.|...++++...+.+..
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999999887543
No 60
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=93.31 E-value=0.68 Score=39.30 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=56.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec---ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC---NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~---~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
..+.+.++|+.++|+...|-.-|-+.|.++++++--. .+.|-+.+....+ +...+.+.+.+++-....+-++.|
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~--~~~~~~~~l~~~f~~~a~~f~m~~ 82 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGE--GGPLDREALRAAFAPLAEEFGMDW 82 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecC--CCcccHHHHHHHHHHHHHhhCcee
Confidence 3478999999999999999999999999999987664 3567777766543 333777888888777555555444
No 61
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.18 E-value=0.71 Score=31.00 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=48.9
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEec-cCCCCCCCCHHHHHHHHHHH
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAV-PQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~-~~~~~~~~~~~~ik~al~~a 151 (164)
.|.|.||.+.|+--++...+=++||.|....+++-+....-+.-+ .....-.+.-+.+|+.|..+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 588999999999999999999999999999999876544333322 11123346778888887764
No 62
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.16 E-value=0.45 Score=28.96 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=30.2
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
|+|.|+.++|.+.+++..|.+.++++.+..+...
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD 34 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC
Confidence 4788999999999999999999999999877654
No 63
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.87 E-value=1.2 Score=28.12 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=31.2
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
.+.+.++.++|.|.+++..|.+.+.++.+.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47789999999999999999999999998776654
No 64
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.41 E-value=0.53 Score=33.57 Aligned_cols=71 Identities=10% Similarity=0.167 Sum_probs=58.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCC
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVE 158 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~ 158 (164)
++|.|.-..++|+...+-.+|-++|+++++.+=+-. +.|+|-...- - +.+..+...++..+..+..+.|..
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~-~-~~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD-I-SKEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc-C-ChHhccHHHHHHHHHHHHHhcCcE
Confidence 678899999999999999999999999999765554 6678776542 1 235688999999999999888865
No 65
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.01 E-value=1.2 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.4
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+.|.=+.+||.|.++++.|.+.|.+|.+...+.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~ 34 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV 34 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence 567778999999999999999999998776543
No 66
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.23 E-value=2.7 Score=27.02 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
..+.+..+.++|.|.++++.|.+.|+++.+....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 3577889999999999999999999999987544
No 67
>PRK04435 hypothetical protein; Provisional
Probab=91.23 E-value=1.5 Score=33.55 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=34.9
Q ss_pred EcCeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 82 IGENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 82 ~~~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
.|+.+.|.+.++.++|+|.+|++.|.+.|.+|...+.+.
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i 104 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI 104 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc
Confidence 366799999999999999999999999999999887654
No 68
>PRK08577 hypothetical protein; Provisional
Probab=90.77 E-value=2.5 Score=31.51 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=33.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
.+.|.|.+..++|+|.+++..|.+.+.++.+.+..+.
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~ 92 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEEL 92 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEe
Confidence 4889999999999999999999999999998776553
No 69
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=90.25 E-value=1.2 Score=35.65 Aligned_cols=67 Identities=4% Similarity=-0.007 Sum_probs=51.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHh
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEK 154 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~ 154 (164)
..+.|.+.++.|||++..|-+.|-+.|.++..++.+.. +.|++-.... +...+...++.+|-..-.+
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~~~~~~le~~L~~l~~~ 74 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSWNAITLIESTLPLKGAE 74 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CChhHHHHHHHHHHhhhhh
Confidence 45789999999999999999999999999999998876 4576655442 2233667777777665444
No 70
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=90.01 E-value=3.8 Score=26.93 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.2
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 89 RVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 89 ~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
-+..+.+||.|.++++.|...|+++.+.....
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp 34 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRP 34 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee
Confidence 34567899999999999999999999986554
No 71
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=89.21 E-value=4.9 Score=26.84 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=28.0
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
.+.+.-+.++|.|.++++.|.+.|+++++.....
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p 36 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRP 36 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEE
Confidence 3455667889999999999999999999875443
No 72
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=88.94 E-value=3.9 Score=25.37 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=30.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
+.|.++.++|.+.+++..|.+.++++.+.++...
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~ 35 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRK 35 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEecc
Confidence 5688999999999999999999999999887764
No 73
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=88.92 E-value=2 Score=26.56 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=30.0
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
|.+..+.+||.|.++++.|...|.+|.+..+...
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~ 34 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAET 34 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEc
Confidence 4578899999999999999999999988877654
No 74
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=88.76 E-value=1.5 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=31.3
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeeccc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNY 122 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~ 122 (164)
.|.|..+.+||.|.++++.|.+.|++|.+.-+....
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~ 38 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTS 38 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecC
Confidence 467889999999999999999999999998765543
No 75
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.15 E-value=1.1 Score=28.20 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=29.8
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+.+.++.++|.+.++...|.+.+.++.+.+...
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678899999999999999999999999887665
No 76
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=88.05 E-value=4.4 Score=41.93 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=57.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEE---eecc--cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQAT---VSCN--YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~---vs~~--~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.++|.....+..|.+++-.|++|||.|+... +.+. ..+-++.+...-..+...+...+++.+.+++.+.|...
T Consensus 489 ~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 489 RLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNGR 568 (1528)
T ss_pred eEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcCC
Confidence 388999999999999999999999999999965 3332 23444444433223445789999999999999887654
Q ss_pred C
Q 031198 160 Q 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 569 ~ 569 (1528)
T PF05088_consen 569 A 569 (1528)
T ss_pred C
Confidence 3
No 77
>PLN03217 transcription factor ATBS1; Provisional
Probab=87.85 E-value=1.9 Score=30.51 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=40.0
Q ss_pred HHHhHhhHHhhhcc-CC---CCccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 9 RALHRKLHILRTLT-NS---KSVKKSS---IIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 9 ~kln~rl~~LRslv-~~---~KmDKaS---Il~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
+++|+-...|++++ .+ -.-||+| +|.++-.||+.|...|.+|-+.+..+-
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL 76 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999988 22 2234544 899999999999999999998776654
No 78
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.06 E-value=0.35 Score=45.73 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=32.9
Q ss_pred HHHHHHHhHhhHHhhhcc----C-CCCccccchhHHHHHHHH
Q 031198 5 LQRRRALHRKLHILRTLT----N-SKSVKKSSIIMDSLLYVC 41 (164)
Q Consensus 5 r~RR~kln~rl~~LRslv----~-~~KmDKaSIl~dAI~YIk 41 (164)
|-||.|-|+-||.|.-++ . .+-.|||||+-=||.|++
T Consensus 55 RsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 55 RSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 568999999999999987 2 388999999999999986
No 79
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=86.56 E-value=0.62 Score=41.88 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHhHhhHHhhhccC----C-CCccccchhHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLTN----S-KSVKKSSIIMDSLLYVCK 42 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv~----~-~KmDKaSIl~dAI~YIke 42 (164)
-|+||++-|--|+.|--+++ | +..|||||+.=+-.|||-
T Consensus 9 A~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 9 ARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 37899999999999999872 2 679999999999999974
No 80
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=86.53 E-value=5.9 Score=24.69 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=30.9
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
.+.+.+..++|.|.+++..|.+.+.++.+.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 46788999999999999999999999999887653
No 81
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=85.17 E-value=6.2 Score=37.64 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=54.5
Q ss_pred cCeEEEEEEe-cCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHh
Q 031198 83 GENFIVRVRC-NKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATEK 154 (164)
Q Consensus 83 ~~~~~I~i~c-~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~ 154 (164)
.++..+.|.. +.++|.|.++...|--.|+.|.+|++.+.+..+.+..... ..+...++..+.|.+..++..
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~ 615 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGPWSAEFDVRA-NGPQDFDPQEFLQAYKSGVYS 615 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCceEEEEEEec-CCCCCCChHHHHHHHHHhhcC
Confidence 4555666766 9999999999999999999999999998554544433322 257778999999988877643
No 82
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=85.13 E-value=7.8 Score=30.99 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=54.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeeccc-------ceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCC
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNY-------YFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVE 158 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~-------~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~ 158 (164)
+.|.|.-..+||++..+-+.|-+.|++|.+-+.-+.. -|.+..... -....+...++.++.......+.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~---lP~~~~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAH---SPASQDAANIEQAFKALCTELNAQ 172 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEE---cCCCCCHHHHHHHHHHHHHHhCce
Confidence 7889999999999999999999999999986654432 466665442 245577899999999887777665
No 83
>PRK07334 threonine dehydratase; Provisional
Probab=85.03 E-value=6.7 Score=34.47 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=32.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+.|+|.+..++|+|.+|+..|.+.+.+|.+.+...
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~ 361 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQR 361 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEe
Confidence 88999999999999999999999999999988764
No 84
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=84.65 E-value=11 Score=25.94 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=32.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
..|.+.-+++||.|.++...|...|+++.+-+++..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~t 38 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNER 38 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEeccc
Confidence 357888899999999999999999999999888754
No 85
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=84.21 E-value=0.51 Score=45.96 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=46.9
Q ss_pred HHHHHHHHhHhhHHhhhcc--CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLT--NSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv--~~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
|++=|--+|+|...||-+| .-.|+.|.+.+.-||+||++|+..-+.+..+.+.+.
T Consensus 284 EKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 284 EKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred HHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 5566888999999999999 458999999999999999999998888777655443
No 86
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=83.48 E-value=0.77 Score=42.56 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHHhHhhHHhhhcc-----CCCCccccchhHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT-----NSKSVKKSSIIMDSLLYVC 41 (164)
Q Consensus 7 RR~kln~rl~~LRslv-----~~~KmDKaSIl~dAI~YIk 41 (164)
-|++||.-|..|-||+ -|+|.||-|||-=++.|++
T Consensus 36 HRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 36 HRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred HHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 6899999999999998 2699999999999999975
No 87
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=82.62 E-value=5.6 Score=26.47 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=27.2
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+-+..+++||.|.++++.|...|+++.+-..-.
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP 35 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRP 35 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCC
Confidence 334557899999999999999999999966443
No 88
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.55 E-value=14 Score=25.89 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=28.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
..|-+..++++|.|.+++..|...|+++.+-..-
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSR 48 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESR 48 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEec
Confidence 4566667889999999999999999999996543
No 89
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=81.99 E-value=7.1 Score=27.46 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=32.1
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
.|.+.-+++||.|.++...|-..|+++.+-+++..
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~T 38 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHS 38 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEeccc
Confidence 57888899999999999999999999999888865
No 90
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.40 E-value=4.1 Score=26.54 Aligned_cols=33 Identities=6% Similarity=0.110 Sum_probs=28.5
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+.+.=+.+||.|.++++.|.+.|.+|.+.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 456778999999999999999999999876554
No 91
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=80.79 E-value=12 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=34.3
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEE
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAM 126 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l 126 (164)
.|.|+-+++||.|.++..+|.+.|+++---++..++.|-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 4789999999999999999999999999888776655543
No 92
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=80.69 E-value=15 Score=25.06 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=32.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
..+.+.-.++||.|.+++..|...|++|.+-++...
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t 39 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQN 39 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeec
Confidence 357788899999999999999999999999888764
No 93
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=80.65 E-value=12 Score=29.58 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=48.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc---cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN---YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~---~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
..|.|.-+++||+|.++...|-..|+++.+-++... +...+.....+ +... .+.|...|.+.+.-.....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~---~~~~-ieqL~kQL~KLidVl~V~~ 75 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG---DDRT-IEQLTKQLYKLVNILKVQD 75 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC---CHHH-HHHHHHHHHHHhHhhEEEe
Confidence 357888899999999999999999999999888653 22233333221 1112 6788888877765544433
No 94
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.65 E-value=15 Score=24.78 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=24.9
Q ss_pred EecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 91 RCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 91 ~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
.-+.++|.|.+++..|+..|+++.+-..-
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSR 34 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESR 34 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEec
Confidence 34788999999999999999999996543
No 95
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=79.16 E-value=10 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 94 KGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
++||.|.+|+..|...|+++.+-+++..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~ 28 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPT 28 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeec
Confidence 4799999999999999999999888874
No 96
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=79.01 E-value=11 Score=29.24 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=32.5
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeeccc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNY 122 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~ 122 (164)
.|.|.-+++||.|.+|...|...|+++.+..++..+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 577888999999999999999999999998887653
No 97
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=78.43 E-value=2.1 Score=24.66 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=12.7
Q ss_pred HHHHHHHhHhhHHhhh
Q 031198 5 LQRRRALHRKLHILRT 20 (164)
Q Consensus 5 r~RR~kln~rl~~LRs 20 (164)
|+||+.|..+|..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5689999999999985
No 98
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.78 E-value=19 Score=24.52 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=29.0
Q ss_pred EEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEeecccceEEE
Q 031198 87 IVRVRC---NKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMD 127 (164)
Q Consensus 87 ~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~ 127 (164)
+|.|.. +..+|.+.+++++|++.|++|-....+. .++++-
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~qs~-~sISft 45 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSE-VSISLT 45 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEecC-CEEEEE
Confidence 455544 5568999999999999999999875433 444443
No 99
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=77.51 E-value=29 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=32.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
..|.|.-+++||.|.+|...|...|+++.+..+...
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~t 38 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPT 38 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeec
Confidence 357788899999999999999999999999888765
No 100
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.35 E-value=23 Score=23.71 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=37.4
Q ss_pred ecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhc
Q 031198 92 CNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQ 155 (164)
Q Consensus 92 c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~ 155 (164)
.+..+|.+.+|+++|.+.|++|-....+. .++++-+... +... -+.++.+|.+-+.+.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~-~~iSftv~~~----d~~~-~~~~~~~l~~~l~~~ 68 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE-ISVALTLDNT----GSTS-DQLLTQALLKELSQI 68 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC-CEEEEEEecc----ccch-hHHHHHHHHHHHHhc
Confidence 35679999999999999999998875433 4444443321 1111 145666776666663
No 101
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.57 E-value=21 Score=22.98 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=25.1
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 89 RVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 89 ~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+|.=+.+||-|.++++.|.. |.+|...+-.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~ 31 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR 31 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence 46668899999999999999 9888876544
No 102
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=72.76 E-value=18 Score=24.14 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=33.3
Q ss_pred ceEEEEEcCeEEEEEEecCC------CChHHHHHHHHHcCCCeEEEEEeec
Q 031198 76 EVKVEKIGENFIVRVRCNKG------ENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 76 ~V~V~~~~~~~~I~i~c~k~------~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
.|.+...++.+.|.+.++.. ...+-.+-++|...|+.+.+.+++.
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQ 78 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEES
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 56666668889999999876 3356778999999999999988764
No 103
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=71.57 E-value=8.6 Score=24.31 Aligned_cols=32 Identities=9% Similarity=-0.042 Sum_probs=27.2
Q ss_pred EEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 89 RVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 89 ~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
-+.+..++|.+.+++..|.+.+.++...+...
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~ 34 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQT 34 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccC
Confidence 35789999999999999999999997766544
No 104
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=70.20 E-value=6.5 Score=25.06 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=28.5
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+-+..+.++|.+.++...|.+.|+++.+..++.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~ 34 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGR 34 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeec
Confidence 346789999999999999999999998877654
No 105
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=69.67 E-value=29 Score=33.49 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=32.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
+.|.|.+..++|+|.+|..+|.+.+.+|.++++...
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~ 702 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSD 702 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEc
Confidence 468999999999999999999999999999988653
No 106
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.63 E-value=24 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=27.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
..+-+..++++|.|.++|..|...|+++.+-..-
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESR 75 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESR 75 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECC
Confidence 3444555889999999999999999999996543
No 107
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=64.91 E-value=42 Score=31.98 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=33.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
+.|+|.+..++|+|.+|+.+|-+.+.+|.+.++...
T Consensus 611 v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~ 646 (683)
T TIGR00691 611 VDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY 646 (683)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc
Confidence 568999999999999999999999999999988764
No 108
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=64.51 E-value=31 Score=21.39 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=26.4
Q ss_pred cCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEE
Q 031198 93 NKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDA 128 (164)
Q Consensus 93 ~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~ 128 (164)
...+|...+++++|++.|++|.....+. +++++-.
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~-~~is~~v 45 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE-NSVTLYL 45 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC-CEEEEEE
Confidence 3568999999999999999999985433 4444443
No 109
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=64.27 E-value=43 Score=32.07 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=33.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
+.|+|.+..++|+|.+|+.+|-+.+.+|.++++...
T Consensus 627 v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~ 662 (702)
T PRK11092 627 AEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK 662 (702)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc
Confidence 568999999999999999999999999999997654
No 110
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=63.14 E-value=30 Score=20.70 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=26.7
Q ss_pred EEEEEec---CCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 87 IVRVRCN---KGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 87 ~I~i~c~---k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+|.|.+. ..+|.+.+++++|.+.++++.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4566543 568899999999999999998876543
No 111
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=61.18 E-value=1e+02 Score=26.65 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=30.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
.+.+.|.=+.+||.|.++++.+.+.|.+|++....
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 36888999999999999999999999999887543
No 112
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=61.15 E-value=35 Score=21.62 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEE
Q 031198 94 KGENRLVSILEAFEEMGLIVRQAT 117 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~ 117 (164)
..+|++.+++++|...|++|....
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEE
Confidence 579999999999999999997544
No 113
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=60.86 E-value=31 Score=20.11 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.5
Q ss_pred CCChHHHHHHHHHcCCCeEEEEEee
Q 031198 95 GENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 95 ~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
.+|.+.+++++|.+.++++.....+
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999998876544
No 114
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=59.62 E-value=11 Score=34.90 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=39.2
Q ss_pred cHHHHHHHHhHhhHHhhhcc--CC---CCccccchhHHHHHHHHHHHHHHHHHH
Q 031198 3 SRLQRRRALHRKLHILRTLT--NS---KSVKKSSIIMDSLLYVCKLKLKLEAIK 51 (164)
Q Consensus 3 ser~RR~kln~rl~~LRslv--~~---~KmDKaSIl~dAI~YIkeLq~~v~~Le 51 (164)
.||-|=+.+|+-|..|--|. .. +.-.|--||-.|+.-|-.|+++|++-.
T Consensus 533 RERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 533 RERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 34556678999999999887 33 334588999999999999999999743
No 115
>PRK14623 hypothetical protein; Provisional
Probab=58.36 E-value=51 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+++.....+++|++.++++.+++..
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~ 27 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTV 27 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888888888888877543
No 116
>PRK14627 hypothetical protein; Provisional
Probab=57.55 E-value=54 Score=23.50 Aligned_cols=24 Identities=4% Similarity=0.184 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 34 MDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 34 ~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
.+.....+++|++.++++.+++..
T Consensus 4 ~~~mkqaq~mQ~km~~~Q~el~~~ 27 (100)
T PRK14627 4 RQLMQMAQQMQRQMQKVQEELAAT 27 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566777888888888776543
No 117
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=57.53 E-value=69 Score=23.02 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=32.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
..|.+.-++.||+|.+|...|-..|.++.+-+++.+
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~t 44 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPI 44 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeec
Confidence 678999999999999999999999999999887765
No 118
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=57.50 E-value=38 Score=23.03 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=35.4
Q ss_pred EEEEecCCCChH----HHHHHHHHcCCCe-EEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhc
Q 031198 88 VRVRCNKGENRL----VSILEAFEEMGLI-VRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQ 155 (164)
Q Consensus 88 I~i~c~k~~g~l----~~i~~ale~l~L~-V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~ 155 (164)
++|.=..+||++ -.+..+|..||++ |.+++++-...|.+++. +...+.+.+...-.+.+.++
T Consensus 3 ~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k~~~l~~~~~------~~~~a~~~v~~i~~~lL~Np 69 (80)
T PRK05974 3 VKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGKYFELELEGE------SEEKAEADLKEMCEKLLANP 69 (80)
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCC------chhhhHHHHHHHHHHhcCCc
Confidence 344444567654 5688999999998 88877664444433321 22344444555444455444
No 119
>PRK14626 hypothetical protein; Provisional
Probab=56.63 E-value=57 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.+-+.-.+++|++.++++++++..
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~ 31 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKE 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566777888888888888877654
No 120
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=55.78 E-value=25 Score=33.69 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=48.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATE 153 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~ 153 (164)
..++|....++|+|..|+.+|+ +|.-+++++.+.-.+...... ...+-..+..+|..++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~----~~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK----PGFDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec----CcccHHHHHHHHHHHHh
Confidence 5789999999999999999999 899999999988777777653 22455677788877764
No 121
>PRK14622 hypothetical protein; Provisional
Probab=55.34 E-value=56 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSN 56 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~ 56 (164)
+.+.....+++|++.++++.+++.
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~ 26 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAE 26 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666677778887777776654
No 122
>PRK14625 hypothetical protein; Provisional
Probab=54.96 E-value=60 Score=23.76 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.+.+.-.+++|++.++++.+++..
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~ 28 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAET 28 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677788888888888877654
No 123
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=54.92 E-value=23 Score=23.90 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=25.7
Q ss_pred CcceEEEEE-cCeEEEEEEecCCCChHHHHHHHHHc
Q 031198 74 PKEVKVEKI-GENFIVRVRCNKGENRLVSILEAFEE 108 (164)
Q Consensus 74 ~~~V~V~~~-~~~~~I~i~c~k~~g~l~~i~~ale~ 108 (164)
..+-+|... ++++.+-|.|++++-+|-+|=..+++
T Consensus 4 ~~dW~Vsrt~dGdYrL~itcp~Ke~LlqSIEgmi~~ 39 (71)
T PF11619_consen 4 AADWEVSRTLDGDYRLVITCPKKEWLLQSIEGMIKE 39 (71)
T ss_dssp T-S-EEEEETTTCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cccceeeeccCCceEEEEecCcHHHHHHHHHHHHHH
Confidence 346788887 45699999999998887777666654
No 124
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=54.55 E-value=49 Score=20.38 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=24.7
Q ss_pred EEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEe
Q 031198 87 IVRVRC---NKGENRLVSILEAFEEMGLIVRQATV 118 (164)
Q Consensus 87 ~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~v 118 (164)
+|.|.+ ...+|.+.+++++|.+.|++|.-.+-
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 355555 35689999999999999999966543
No 125
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=54.22 E-value=7.1 Score=30.61 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhHhhHHhhhccC---CCCccccchhHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLTN---SKSVKKSSIIMDSLLYVCKL 43 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv~---~~KmDKaSIl~dAI~YIkeL 43 (164)
|-||||=.-||+-|.+||-+++ +-|..|.--|.-|--||-=|
T Consensus 84 vrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl 128 (173)
T KOG4447|consen 84 VRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFL 128 (173)
T ss_pred HHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchh
Confidence 5689999999999999999984 44444444455555555443
No 126
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.96 E-value=27 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=30.7
Q ss_pred HHHHHHHhHhhHHhhhccCCCCccccchhHHHHHHHHHHHHHHHHH
Q 031198 5 LQRRRALHRKLHILRTLTNSKSVKKSSIIMDSLLYVCKLKLKLEAI 50 (164)
Q Consensus 5 r~RR~kln~rl~~LRslv~~~KmDKaSIl~dAI~YIkeLq~~v~~L 50 (164)
|.-|=....+|..+.+++...+.|+ |.+||+++-..++..
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~~~~------a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGKYEE------AKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHH
Confidence 4456667778999999998788765 589999998887766
No 127
>PRK06382 threonine dehydratase; Provisional
Probab=53.96 E-value=1.1e+02 Score=26.95 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=45.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee----cc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS----CN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs----~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.+.|.=+.+||.|.++++.|.+.+.+|++.... .. .+...-.+..+ +.+.+ -.+.|.+.|.+-||.+
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~ve-----t~~~~-~~~~v~~~L~~~Gy~~ 403 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVN-----VRGQD-HLDRILNALREMGYKF 403 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEE-----eCCHH-HHHHHHHHHHHCCCCe
Confidence 47788888999999999999999999999886653 11 12221111111 12222 2346777777777765
Q ss_pred C
Q 031198 160 Q 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 404 ~ 404 (406)
T PRK06382 404 N 404 (406)
T ss_pred e
Confidence 4
No 128
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=53.33 E-value=67 Score=22.99 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.+.+.-.+++|+++++++.+++..
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~~ 31 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQF 31 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667777888888888888877643
No 129
>PRK14624 hypothetical protein; Provisional
Probab=53.14 E-value=67 Score=23.75 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.+....-+++|++.++++++++..
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~ 32 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASI 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566677777777777777766543
No 130
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.65 E-value=58 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 94 KGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
..+|++.+++++|.+.++.+.+...|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s 37 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN 37 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC
Confidence 57899999999999988888665544
No 131
>PRK11899 prephenate dehydratase; Provisional
Probab=52.19 E-value=1.5e+02 Score=25.14 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=38.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc----c--ceEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN----Y--YFAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~----~--~f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
..|-+..+++||.|.++|+.|-..|++...-..-.. . .|-++..+ ..+...++++|...
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg-------~~~d~~v~~aL~~l 259 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG-------HPEDRNVALALEEL 259 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC-------CCCCHHHHHHHHHH
Confidence 344445578999999999999999999887543332 3 34455543 12334566666654
No 132
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=52.06 E-value=65 Score=21.10 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=25.8
Q ss_pred EEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 87 IVRVRC---NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 87 ~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+|.|.+ ...+|.+.+++++|.+.|++|.....+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s 38 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS 38 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcC
Confidence 455533 456899999999999999999887543
No 133
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.50 E-value=28 Score=23.83 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEe
Q 031198 94 KGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIA 130 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~ 130 (164)
+.-|.+.++|+.||..|+.+-|.-.+ .+++++-...
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~PSG-ID~~Siii~~ 48 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMPSG-IDDISIIIRD 48 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeecCC-CccEEEEEEc
Confidence 45699999999999999999997633 5677766543
No 134
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=50.86 E-value=56 Score=21.05 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=27.0
Q ss_pred EEEEEEec----CCCChHHHHHHHHHcCCCeEEEEE
Q 031198 86 FIVRVRCN----KGENRLVSILEAFEEMGLIVRQAT 117 (164)
Q Consensus 86 ~~I~i~c~----k~~g~l~~i~~ale~l~L~V~~a~ 117 (164)
..|.|.++ ..+|++.++..+|-+-|++|...+
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 55788776 368999999999999999999888
No 135
>PRK14629 hypothetical protein; Provisional
Probab=50.48 E-value=77 Score=22.82 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031198 35 DSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 35 dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+...-.+++|++.++++.+++..
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~~ 29 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQI 29 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667788888888888877543
No 136
>PF14992 TMCO5: TMCO5 family
Probab=50.17 E-value=25 Score=30.06 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=24.0
Q ss_pred cccch---hHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 28 KKSSI---IMDSLLYVCKLKLKLEAIKREYSN 56 (164)
Q Consensus 28 DKaSI---l~dAI~YIkeLq~~v~~Le~e~~~ 56 (164)
|-+++ -.|+..||++||+.++.++.+.+.
T Consensus 138 d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 138 DYQQVHQLCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 789999999999999999986654
No 137
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.30 E-value=80 Score=21.29 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=21.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEE
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVR 114 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~ 114 (164)
.++.|.=+.+||.|.++++.|- +-+|.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~ 28 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNIT 28 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCcee
Confidence 3578888999999999999998 44444
No 138
>PRK14621 hypothetical protein; Provisional
Probab=49.28 E-value=82 Score=23.07 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSN 56 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~ 56 (164)
+.+.+.-.+++|++.++++++++.
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~ 29 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEK 29 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455667777788888877777654
No 139
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=49.27 E-value=22 Score=27.96 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHHHhHhhHHhhhccC---CCCcccc---chhHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLTN---SKSVKKS---SIIMDSLLYVCKLKLK 46 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv~---~~KmDKa---SIl~dAI~YIkeLq~~ 46 (164)
||+|-.++|+.+..|+.+.+ ..+|.+- +|=.|-|.+..|||.+
T Consensus 30 e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~q 78 (173)
T KOG4447|consen 30 ERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQ 78 (173)
T ss_pred HHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHH
Confidence 45677899999999999982 3333322 3445777777777764
No 140
>PRK00587 hypothetical protein; Provisional
Probab=48.69 E-value=86 Score=22.53 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+++...-.+++|++.++++.+++..
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~ 27 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEK 27 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666778888888888777554
No 141
>PRK08198 threonine dehydratase; Provisional
Probab=48.14 E-value=1.9e+02 Score=25.24 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+.+.+.|.=+.+||.|.++++.+-+.|.+|...+..
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 347889999999999999999999999988876654
No 142
>PRK11898 prephenate dehydratase; Provisional
Probab=47.22 E-value=1.5e+02 Score=24.88 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=27.8
Q ss_pred EEEEEEecC-CCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 86 FIVRVRCNK-GENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 86 ~~I~i~c~k-~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
..+-+..++ ++|.|.++|..|...|+++.+-..-.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP 232 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRP 232 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEeccc
Confidence 445566666 49999999999999999999965443
No 143
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.35 E-value=59 Score=21.63 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=26.6
Q ss_pred cCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEE
Q 031198 93 NKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDA 128 (164)
Q Consensus 93 ~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~ 128 (164)
+..+|.+.+++++|...|++|-....+. +++++-.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~s~-~~isftv 46 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVSTSE-TNVTVSL 46 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEeCC-CEEEEEE
Confidence 5568999999999999999999875432 4444443
No 144
>smart00338 BRLZ basic region leucin zipper.
Probab=46.24 E-value=35 Score=21.97 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHHhHhhHHhhhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLTNSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv~~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
++++|.++..+-.+-++=. ---.|+.+|+.++..|+.+...+.
T Consensus 4 ~k~~rR~~rNR~aA~~~R~------------rKk~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 4 EKRRRRRERNREAARRSRE------------RKKAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666542 123589999999999888776554
No 145
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.07 E-value=66 Score=19.39 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=24.9
Q ss_pred EEEEe---cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 88 VRVRC---NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 88 I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
|.|.+ .+.+|.+.+++++|.+.+++|.-.+.+
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 45543 345899999999999999999877644
No 146
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=45.51 E-value=45 Score=25.72 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
..+.+.+.-+.+.|.|.++++++-..+++|+..+=+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ 106 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQT 106 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecc
Confidence 348899999999999999999999999999986533
No 147
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=45.17 E-value=76 Score=22.23 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=41.1
Q ss_pred EEEEEecCCCChH----HHHHHHHHcCCCe-EEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhc
Q 031198 87 IVRVRCNKGENRL----VSILEAFEEMGLI-VRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQ 155 (164)
Q Consensus 87 ~I~i~c~k~~g~l----~~i~~ale~l~L~-V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~ 155 (164)
.++|.-..++|+| .-|-.||..||.+ |.++++.-...|.+++.. .......++.+-.+.+.|+
T Consensus 3 ~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK~~el~ld~~~------~e~a~~~v~~mcekLLaNp 70 (83)
T COG1828 3 KVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDAES------EEKAEEEVKEMCEKLLANP 70 (83)
T ss_pred EEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeeeEEEEEecCcc------hhHHHHHHHHHHHHHhCCC
Confidence 3455555566654 4688999999977 999999877777776532 2233345666666655554
No 148
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=44.93 E-value=84 Score=20.31 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=22.2
Q ss_pred cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 93 NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 93 ~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
...+|.+.+++++|.+.++++.-.+-+
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 12 VGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 456899999999999999999765543
No 149
>PRK00153 hypothetical protein; Validated
Probab=44.48 E-value=1e+02 Score=21.85 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.+-+.-.+++|+++++++.++...
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~ 29 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566777888888888888877544
No 150
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.04 E-value=36 Score=21.88 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~~ 58 (164)
-.|+.+|+.++..|+.+...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999988766554
No 151
>PRK13847 conjugal transfer protein TraD; Provisional
Probab=43.78 E-value=35 Score=23.26 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=25.8
Q ss_pred HHHHHhHhhHHhhhcc---CCCCccccchhHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT---NSKSVKKSSIIMDSLLYVCKLK 44 (164)
Q Consensus 7 RR~kln~rl~~LRslv---~~~KmDKaSIl~dAI~YIkeLq 44 (164)
||++ ..+++.|=.|| +++..|+|.|+|-=+.-=.+|+
T Consensus 10 Rkkd-TR~kIeLGGLVVKAGL~~~dra~llGaLl~~a~~L~ 49 (71)
T PRK13847 10 RKKD-TREKIELGGLIVKAGLRYEKRALLLGALIDAGRRIK 49 (71)
T ss_pred HHHH-HHHHHHhcceeeecCCCCccHHHHHHHHHHHHHHhc
Confidence 4444 45678888887 7899999999986665333453
No 152
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.43 E-value=47 Score=22.25 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 30 SSIIMDSLLYVCKLKLKLEAIKREYSN 56 (164)
Q Consensus 30 aSIl~dAI~YIkeLq~~v~~Le~e~~~ 56 (164)
++=|++|+.-+.+|+..++.|..+...
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999988654
No 153
>PRK03762 hypothetical protein; Provisional
Probab=43.08 E-value=1.2e+02 Score=21.90 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 34 MDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 34 ~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.-..-.+++|+++++++++++..
T Consensus 8 ~~m~kqaqkmQ~km~~~Q~el~~~ 31 (103)
T PRK03762 8 SKLGEMLEQMQKKAKQLEEENANK 31 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555777888888888776543
No 154
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=42.94 E-value=35 Score=26.89 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=29.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+.+-|.-+.+||.|+++++-|-++|-+|++.--+.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r 40 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSR 40 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeec
Confidence 45677889999999999999999999998866553
No 155
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=42.87 E-value=36 Score=18.18 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 031198 40 VCKLKLKLEAIKREYS 55 (164)
Q Consensus 40 IkeLq~~v~~Le~e~~ 55 (164)
|..|+.++.+||.++.
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678889999988764
No 156
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=42.68 E-value=99 Score=20.48 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEEeecccceEEE
Q 031198 94 KGENRLVSILEAFEEMGLIVRQATVSCNYYFAMD 127 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~ 127 (164)
..+|.+.+++++|...|++|-....+. .++++-
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~s~-~~isft 45 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLISTSE-VHVSMA 45 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEeCC-CEEEEE
Confidence 458999999999999999998875433 444443
No 157
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.88 E-value=85 Score=19.22 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=24.3
Q ss_pred EEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEe
Q 031198 87 IVRVRC---NKGENRLVSILEAFEEMGLIVRQATV 118 (164)
Q Consensus 87 ~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~v 118 (164)
+|.+.+ ++.+|.+.+++++|.+.|++|.-.+.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 345544 35689999999999999999966543
No 158
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.47 E-value=89 Score=19.30 Aligned_cols=25 Identities=0% Similarity=-0.037 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEEe
Q 031198 94 KGENRLVSILEAFEEMGLIVRQATV 118 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~v 118 (164)
..+|.+.+++++|.+.|++|.-.+-
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 4689999999999999999965543
No 159
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=40.45 E-value=83 Score=21.58 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=28.4
Q ss_pred EEEEEecCCCChH----HHHHHHHHcCCCe-EEEEEeecccceEEEE
Q 031198 87 IVRVRCNKGENRL----VSILEAFEEMGLI-VRQATVSCNYYFAMDA 128 (164)
Q Consensus 87 ~I~i~c~k~~g~l----~~i~~ale~l~L~-V~~a~vs~~~~f~l~~ 128 (164)
.++|.=..++|++ -.|..+|..||++ |.++++.-.-.|.+++
T Consensus 2 ~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~ 48 (80)
T PF02700_consen 2 KVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEA 48 (80)
T ss_dssp EEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeC
Confidence 3455555667754 4599999999999 9999988766666664
No 160
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=39.89 E-value=1.3e+02 Score=21.11 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=48.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc---cceEEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN---YYFAMDAIAVPQNPQQALEARDVAQVILKATE 153 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~---~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~ 153 (164)
+.+.+.-..+|+.|.+++...+--|+.|...+.|.. +...++... +..-+++.+...|.+...
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-----~s~R~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-----DSDRSVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-----cCCCChHHHHHHHHHHcc
Confidence 456777888999999999999999999999888765 445666554 344567777777766544
No 161
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=39.46 E-value=1e+02 Score=24.64 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=49.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec--c-----cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHh
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC--N-----YYFAMDAIAVPQNPQQALEARDVAQVILKATEK 154 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~--~-----~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~ 154 (164)
-+.+++.-..|||++-++..-|..+|+++.+-..-+ . .-|.+++... -...++...+++.+......
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~---lPa~~~i~~l~~~f~al~~~ 165 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITAR---LPANLSISALRDAFEALCDE 165 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhcc---CCCcCcHHHHHHHHHHHHHh
Confidence 377888999999999999999999999887743222 1 2356555442 35678889999888765443
No 162
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=39.46 E-value=86 Score=18.84 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.7
Q ss_pred cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 93 NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 93 ~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+..+|.+.+++++|.+.+++|.-.+.+
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 355899999999999999999877644
No 163
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.32 E-value=1e+02 Score=19.48 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 94 KGENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
+.+|++.+++++|.+.|++|.-.+-++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 347899999999999999996655443
No 164
>PRK14011 prefoldin subunit alpha; Provisional
Probab=37.96 E-value=1.1e+02 Score=23.41 Aligned_cols=24 Identities=8% Similarity=0.199 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 36 SLLYVCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 36 AI~YIkeLq~~v~~Le~e~~~~~~ 59 (164)
=+.|++.|+++++.|.+++..+..
T Consensus 8 ~~~~l~~~~~qie~L~~si~~L~~ 31 (144)
T PRK14011 8 QFMALEVYNQQVQKLQEELSSIDM 31 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888887766654
No 165
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=37.87 E-value=58 Score=20.35 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031198 40 VCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 40 IkeLq~~v~~Le~e~~~~~~ 59 (164)
|..|+++|..|+.++..+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 45788888888888877654
No 166
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.59 E-value=37 Score=26.43 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=38.0
Q ss_pred HHHhHhhHHhhhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031198 9 RALHRKLHILRTLTNSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYS 55 (164)
Q Consensus 9 ~kln~rl~~LRslv~~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~ 55 (164)
.....-..++|.+++-+.-|+++..++=-.|++.|++++++++.-+.
T Consensus 125 ~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~ 171 (174)
T COG1076 125 ADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171 (174)
T ss_pred hhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777555589999999999999999999999987553
No 167
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=37.00 E-value=53 Score=21.51 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031198 40 VCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 40 IkeLq~~v~~Le~e~~~~~~ 59 (164)
|.||++++..|++|+..+++
T Consensus 23 v~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888887766654
No 168
>PLN02678 seryl-tRNA synthetase
Probab=36.52 E-value=1.3e+02 Score=27.25 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHHHHhHhhHHhhhcc-CCCC------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT-NSKS------VKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 7 RR~kln~rl~~LRslv-~~~K------mDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~~ 59 (164)
.|.++..++..||+-- .++| .++. =..+.+.-+++|+++++.|+.+...++.
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~-~~~~l~~~~~~Lk~ei~~le~~~~~~~~ 99 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKE-DATELIAETKELKKEITEKEAEVQEAKA 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777654 1111 2221 2356677788888888888887766654
No 169
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.36 E-value=84 Score=21.24 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+..||+-|.-||.++++|+.+...+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5679999999999999999875444
No 170
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=34.96 E-value=3.5e+02 Score=24.60 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=27.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
..|-+.-++++|.|.++|+.|...|+++.+-..-
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESR 50 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESR 50 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecc
Confidence 4455555888999999999999999999996543
No 171
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=34.26 E-value=2.4e+02 Score=27.28 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=32.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
+-|.|.-.+++|+|.+|+++|-+.+.+|.+++..+.
T Consensus 628 ~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~ 663 (701)
T COG0317 628 VDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD 663 (701)
T ss_pred EEEEEEEccccchHHHHHHHHHhCCCceEEeecccc
Confidence 557888999999999999999999999999887764
No 172
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=33.85 E-value=1.5e+02 Score=19.86 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=31.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEec
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAV 131 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~ 131 (164)
++|||.| .+.-...|++-.+.++-.|++.+ .++++++..+.
T Consensus 5 ~LiKV~~--~~~~r~ei~~l~~~f~a~ivd~~---~~~~iie~tG~ 45 (75)
T PF10369_consen 5 ALIKVKA--TPENRSEILQLAEIFRARIVDVS---PDSIIIELTGT 45 (75)
T ss_dssp EEEEEE---SCHHHHHHHHHHHHTT-EEEEEE---TTEEEEEEEE-
T ss_pred EEEEEEC--CccCHHHHHHHHHHhCCEEEEEC---CCEEEEEEcCC
Confidence 7899999 56778889999999999998876 45788888773
No 173
>PRK12483 threonine dehydratase; Reviewed
Probab=33.17 E-value=2.9e+02 Score=25.50 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=44.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec--ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC--NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~--~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
..+.+.|.=+.+||.|.++++.|-.. +|.+.+-.. ...-.+.+.. +.-+.+++++.|.+++.+.|+.+
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~i------e~~~~~~~~~~i~~~l~~~g~~~ 413 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGV------QTHPRHDPRAQLLASLRAQGFPV 413 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEE------EeCChhhhHHHHHHHHHHCCCCe
Confidence 34888999999999999999999877 666543321 1111111111 12345667777888888887764
No 174
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=31.23 E-value=3.5e+02 Score=23.43 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=29.6
Q ss_pred cCeEEEEEE---ecCCCChHHHHHHHHHcCCCeEEEEEe
Q 031198 83 GENFIVRVR---CNKGENRLVSILEAFEEMGLIVRQATV 118 (164)
Q Consensus 83 ~~~~~I~i~---c~k~~g~l~~i~~ale~l~L~V~~a~v 118 (164)
.+-.+|.|. -...+|.+.+++++|.+.+++|...+.
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~ 296 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQ 296 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEc
Confidence 344778887 466789999999999999999987655
No 175
>PRK06635 aspartate kinase; Reviewed
Probab=30.85 E-value=1.7e+02 Score=25.45 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=29.3
Q ss_pred CeEEEEEEe-cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 84 ENFIVRVRC-NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 84 ~~~~I~i~c-~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+-.+|.+.+ ..++|.+.+++++|.+.|++|...+.+
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s 297 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQN 297 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 336677766 556899999999999999999987655
No 176
>PRK08210 aspartate kinase I; Reviewed
Probab=30.70 E-value=2.2e+02 Score=24.80 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=29.9
Q ss_pred CeEEEEEEecCC-CChHHHHHHHHHcCCCeEEEEEee
Q 031198 84 ENFIVRVRCNKG-ENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 84 ~~~~I~i~c~k~-~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+-.+|.|..... +|.+.+|+++|.+.|++|...+.+
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 347788887655 999999999999999999987554
No 177
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.28 E-value=1.3e+02 Score=18.25 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=23.6
Q ss_pred EEEEEe---cCCCChHHHHHHHHHcCCCeEEEEE
Q 031198 87 IVRVRC---NKGENRLVSILEAFEEMGLIVRQAT 117 (164)
Q Consensus 87 ~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~ 117 (164)
+|.|.+ +..+|.+.+++++|.+.|++|.-.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~ 36 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMIS 36 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 345544 3568999999999999999986554
No 178
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.89 E-value=1e+02 Score=18.02 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.8
Q ss_pred cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 93 NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 93 ~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+..+|.+.+++++|.+.|+++...+.+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 567899999999999999999775543
No 179
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.75 E-value=1.6e+02 Score=24.82 Aligned_cols=65 Identities=9% Similarity=0.192 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccC-----------CCCCCCCHHHHHHHHHHHHHhccCCCCCC
Q 031198 97 NRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQ-----------NPQQALEARDVAQVILKATEKQAVEWQPS 162 (164)
Q Consensus 97 g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~-----------~~~~~~~~~~ik~al~~ai~~~~~~~~~~ 162 (164)
.-+.++++.+-.+++++.|-.++...+|.+++....+ ..+...+.+++++-+.-| ..-|.+.+|.
T Consensus 16 ~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA-~~rgI~viPE 91 (303)
T cd02742 16 ESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYA-AARGIEVIPE 91 (303)
T ss_pred HHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHH-HHcCCEEEEe
Confidence 4578899999999999999999998999999765322 023347889999877766 6777776664
No 180
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=29.66 E-value=1.6e+02 Score=19.80 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=24.9
Q ss_pred EEEecCCCChH----HHHHHHHHcCCCe-EEEEEeecccceEE
Q 031198 89 RVRCNKGENRL----VSILEAFEEMGLI-VRQATVSCNYYFAM 126 (164)
Q Consensus 89 ~i~c~k~~g~l----~~i~~ale~l~L~-V~~a~vs~~~~f~l 126 (164)
+|.=..+||++ -.+..+|..||++ |.+++++-...|.+
T Consensus 4 ~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~ 46 (80)
T TIGR00302 4 EVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGKVIELTI 46 (80)
T ss_pred EEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEE
Confidence 34334566654 5688999999998 88877664444443
No 181
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=29.17 E-value=74 Score=20.82 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHhHhhHHhhhcc-CCC------CccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT-NSK------SVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 7 RR~kln~rl~~LRslv-~~~------KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
|.+.|+.++..=..+. +.. ..|+.+++.+|-.-+.+-..++..|+.++..+.
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554433333 222 346666888999999999999998888776553
No 182
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.02 E-value=1.9e+02 Score=24.66 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccC-----CCCCCCCHHHHHHHHHHHHHhccCCCCCC
Q 031198 97 NRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQ-----NPQQALEARDVAQVILKATEKQAVEWQPS 162 (164)
Q Consensus 97 g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~-----~~~~~~~~~~ik~al~~ai~~~~~~~~~~ 162 (164)
.-+.++++.+-.+++++.|-.++...+|.+++....+ ..+.-.+.+++++.+.-| ..-|.+.+|.
T Consensus 18 ~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA-~~rgI~vIPE 87 (311)
T cd06570 18 AVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYA-RDRGIRVVPE 87 (311)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHH-HHcCCEEEEe
Confidence 3577888999999999999999999999999776322 113357899999887766 6666666664
No 183
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=27.93 E-value=77 Score=21.55 Aligned_cols=67 Identities=9% Similarity=0.097 Sum_probs=44.9
Q ss_pred EEEecC-CCChHHHHHHHHHcCCCeEEEEEee-cc---------cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccC
Q 031198 89 RVRCNK-GENRLVSILEAFEEMGLIVRQATVS-CN---------YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAV 157 (164)
Q Consensus 89 ~i~c~k-~~g~l~~i~~ale~l~L~V~~a~vs-~~---------~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~ 157 (164)
.|.-.+ ..|.+..+-+.|-+.|+++.+.+-. .. ..+.++.... +...+.+.++.+|...-...|.
T Consensus 3 tvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~----~~~~~~~~lr~~L~~la~elgv 78 (84)
T cd04871 3 TLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR----GQPADLEALRAALLELASELNV 78 (84)
T ss_pred EEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe----CCCCCHHHHHHHHHHHhcccCc
Confidence 344445 6899999999999999999874321 11 1234444332 2236899999999987777666
Q ss_pred CC
Q 031198 158 EW 159 (164)
Q Consensus 158 ~~ 159 (164)
++
T Consensus 79 DI 80 (84)
T cd04871 79 DI 80 (84)
T ss_pred eE
Confidence 53
No 184
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=27.72 E-value=35 Score=28.47 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHHhHhhHHhhhcc----CCCCccccchhHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLT----NSKSVKKSSIIMDSLLYVCKLKLK 46 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv----~~~KmDKaSIl~dAI~YIkeLq~~ 46 (164)
||+|=-.||+-|..||.++ .-.|+.|.=.|.=|=+||..|++-
T Consensus 80 ER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 80 ERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 5545578999999999998 348888888998888888888754
No 185
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=27.47 E-value=1.5e+02 Score=19.84 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=21.9
Q ss_pred EecCCCChHHHHHHHHHcCCCeEEEE
Q 031198 91 RCNKGENRLVSILEAFEEMGLIVRQA 116 (164)
Q Consensus 91 ~c~k~~g~l~~i~~ale~l~L~V~~a 116 (164)
.....+|+.-++-+.|++.|+.+...
T Consensus 10 Ngt~~~GlA~~~a~~L~~~Gf~v~~~ 35 (90)
T PF13399_consen 10 NGTGVSGLAARVADALRNRGFTVVEV 35 (90)
T ss_pred ECcCCcCHHHHHHHHHHHCCCceeec
Confidence 34556899999999999999999764
No 186
>PRK08210 aspartate kinase I; Reviewed
Probab=27.37 E-value=3.7e+02 Score=23.39 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=40.1
Q ss_pred EEEEcCeEEEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 031198 79 VEKIGENFIVRVRC---NKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKAT 152 (164)
Q Consensus 79 V~~~~~~~~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai 152 (164)
+.+.++-.+|.|.. ...+|.+.+++++|.+-+++|.+...| ...+-..... -+.+...++|++++
T Consensus 333 v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s---~~~is~vv~~------~~~~~a~~~Lh~~f 400 (403)
T PRK08210 333 PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADS---HTTIWVLVKE------EDMEKAVNALHDAF 400 (403)
T ss_pred EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecC---CCEEEEEEcH------HHHHHHHHHHHHHh
Confidence 44434446666655 357899999999999999999863322 2222222211 23556667777765
No 187
>PRK01203 prefoldin subunit alpha; Provisional
Probab=27.09 E-value=2.2e+02 Score=21.49 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 35 DSLLYVCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 35 dAI~YIkeLq~~v~~Le~e~~~~~~ 59 (164)
|.+.-++-|+++++.|++++..+..
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~ 28 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNK 28 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888888776654
No 188
>PRK06635 aspartate kinase; Reviewed
Probab=27.00 E-value=3.9e+02 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=28.4
Q ss_pred cCeEEEEEEe---cCCCChHHHHHHHHHcCCCeEEEEE
Q 031198 83 GENFIVRVRC---NKGENRLVSILEAFEEMGLIVRQAT 117 (164)
Q Consensus 83 ~~~~~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~ 117 (164)
.+-.+|.|.+ +..+|.+.+++++|.+.+++|....
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 4446677765 4678999999999999999998865
No 189
>PRK07431 aspartate kinase; Provisional
Probab=26.85 E-value=3.7e+02 Score=24.78 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=43.9
Q ss_pred EEEEEcCeEEEEEEec---CCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 031198 78 KVEKIGENFIVRVRCN---KGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKAT 152 (164)
Q Consensus 78 ~V~~~~~~~~I~i~c~---k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai 152 (164)
++....+-.+|.|.+. +.+|++.+++.+|.+.+++|...+.| ...+-....+ -+.+...++|++.+
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sS---e~~Is~vv~~------~d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTS---EVKVSCVIDA------EDGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC---CCEEEEEEcH------HHHHHHHHHHHHHh
Confidence 3444455577888774 56899999999999999999887732 2222222211 24566777778777
No 190
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=26.51 E-value=4.1e+02 Score=22.68 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=37.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEe--ecc--cc--eEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATV--SCN--YY--FAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~v--s~~--~~--f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
..|=+.-+++||.|.++|..|-..|++...-.. +.. +. |-++..+ ..+-..++++|...
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg-------~~~~~~v~~AL~el 259 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEG-------HIDDPLVKEALEEL 259 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEec-------CcCcHhHHHHHHHH
Confidence 334444559999999999999999888877443 322 33 4444432 23335677776554
No 191
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=26.49 E-value=3.7e+02 Score=22.19 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=34.4
Q ss_pred eEEEEEEecCCCC--hHHHHHHHHHcCCCeEEEEEeecc---cceEEEEEe
Q 031198 85 NFIVRVRCNKGEN--RLVSILEAFEEMGLIVRQATVSCN---YYFAMDAIA 130 (164)
Q Consensus 85 ~~~I~i~c~k~~g--~l~~i~~ale~l~L~V~~a~vs~~---~~f~l~~~~ 130 (164)
.+.++|.|...++ +...+++.|++.++.+.+.++... +...+++..
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l 192 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAEL 192 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEE
Confidence 4778999988765 578888999999999999888543 234444443
No 192
>PRK14628 hypothetical protein; Provisional
Probab=26.16 E-value=2.7e+02 Score=20.56 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031198 35 DSLLYVCKLKLKLEAIKREY 54 (164)
Q Consensus 35 dAI~YIkeLq~~v~~Le~e~ 54 (164)
++-.--+++|++.+++++++
T Consensus 23 q~~k~qq~mq~k~~elqe~l 42 (118)
T PRK14628 23 DFAKMQEELQKKIQELEESF 42 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444554444
No 193
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=26.16 E-value=43 Score=22.28 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHHHcCCCeE
Q 031198 94 KGENRLVSILEAFEEMGLIV 113 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V 113 (164)
+....+.++..+|+++|++|
T Consensus 56 Rt~~~~~Dv~~al~~~gi~v 75 (77)
T PF07524_consen 56 RTEPNLQDVEQALEEMGISV 75 (77)
T ss_pred CCCCCHHHHHHHHHHhCCCC
Confidence 34455888899999999876
No 194
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=26.04 E-value=85 Score=25.04 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=44.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeeccc-ceEEEEEeccCCCCCCCCHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNY-YFAMDAIAVPQNPQQALEARDVAQVILK 150 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~-~f~l~~~~~~~~~~~~~~~~~ik~al~~ 150 (164)
++|...-..+||+...|..+.-+-|-+++.++++.++ .|++-.... +..=.+..++++|..
T Consensus 6 LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis----gs~dav~~le~~l~~ 67 (176)
T COG2716 6 LVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS----GSWDAVTLLEATLPL 67 (176)
T ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe----eCHHHHHHHHHHhhc
Confidence 6788999999999999999999999999999999874 344443331 122244556665543
No 195
>PRK09084 aspartate kinase III; Validated
Probab=25.52 E-value=2.7e+02 Score=24.91 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=29.8
Q ss_pred CeEEEEEEec---CCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 84 ENFIVRVRCN---KGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 84 ~~~~I~i~c~---k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+-++|.|.+. ..+|.+.+++++|.+.|++|...+.|
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ss 343 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTS 343 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEecc
Confidence 3478899865 46899999999999999999987644
No 196
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.30 E-value=2.4e+02 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=11.1
Q ss_pred cCeEEEEEEecCCCChHHHHHH
Q 031198 83 GENFIVRVRCNKGENRLVSILE 104 (164)
Q Consensus 83 ~~~~~I~i~c~k~~g~l~~i~~ 104 (164)
|.|++++...+.-...+-+=++
T Consensus 76 G~g~~vE~~~~eA~~~l~~r~~ 97 (129)
T cd00584 76 GTGYYVEKDLEEAIEFLDKKIE 97 (129)
T ss_pred CCCEEEEecHHHHHHHHHHHHH
Confidence 6666666655444444433333
No 197
>PRK06349 homoserine dehydrogenase; Provisional
Probab=25.25 E-value=4.1e+02 Score=23.57 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEe
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATV 118 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~v 118 (164)
.++|++.-..+||.|.+|...|.+.++++.+...
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q 381 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQ 381 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEe
Confidence 4899999999999999999999999998887543
No 198
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=24.61 E-value=1.8e+02 Score=17.84 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=22.1
Q ss_pred ecCCCChHHHHHHHHHcCCCeEEEEE
Q 031198 92 CNKGENRLVSILEAFEEMGLIVRQAT 117 (164)
Q Consensus 92 c~k~~g~l~~i~~ale~l~L~V~~a~ 117 (164)
.+..+|.+.+++++|.+.|+++.-..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 36778999999999999999997554
No 199
>PHA03386 P10 fibrous body protein; Provisional
Probab=24.51 E-value=1.7e+02 Score=21.00 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=23.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 27 VKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 27 mDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
|.|-+||----.-|+.+-.||..|++.+..+.
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67888888777788887777777777655443
No 200
>PRK06291 aspartate kinase; Provisional
Probab=24.42 E-value=5.2e+02 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=27.6
Q ss_pred EEEEEEec---CCCChHHHHHHHHHcCCCeEEEEEe
Q 031198 86 FIVRVRCN---KGENRLVSILEAFEEMGLIVRQATV 118 (164)
Q Consensus 86 ~~I~i~c~---k~~g~l~~i~~ale~l~L~V~~a~v 118 (164)
.+|.|... ..+|.+.+++++|.+.|++|...+-
T Consensus 322 alIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq 357 (465)
T PRK06291 322 ALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQ 357 (465)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 67888764 5689999999999999999987653
No 201
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.83 E-value=3.3e+02 Score=24.34 Aligned_cols=54 Identities=24% Similarity=0.227 Sum_probs=32.0
Q ss_pred HHHHHhHhhHHhhhcc-C----CCC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT-N----SKS-VKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMAI 60 (164)
Q Consensus 7 RR~kln~rl~~LRslv-~----~~K-mDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~~~ 60 (164)
.|.++..++..||+-. . +.+ ..+..=....+.-+++|++++++|+.+...++..
T Consensus 36 ~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 36 ERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777654 1 222 1111113346677788888888888887766553
No 202
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.66 E-value=1.9e+02 Score=19.00 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 30 SSIIMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 30 aSIl~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
.+=|.||=...++|+.+|+.|+.+++.+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888889999999999998887654
No 203
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.18 E-value=2.5e+02 Score=19.12 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHhHhhHHhhhcc-CCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 031198 9 RALHRKLHILRTLT-NSKSVKKSSIIMDSLLYVCKLKLKLEAIKREY 54 (164)
Q Consensus 9 ~kln~rl~~LRslv-~~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~ 54 (164)
..|..||...|++| .+.-+|+. +.+=-.+|++|+++++...+-+
T Consensus 31 ~~lk~Klq~ar~~i~~lpgi~~s--~eeq~~~i~~Le~~i~~k~~~L 75 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELPGIDRS--VEEQEEEIEELEEQIRKKREVL 75 (83)
T ss_pred HHHHHHHHHHHHHHHhCCCccCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888 66666664 4555667777777776655533
No 204
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=23.13 E-value=2.1e+02 Score=18.21 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHcCCCeEEEEEeec
Q 031198 95 GENRLVSILEAFEEMGLIVRQATVSC 120 (164)
Q Consensus 95 ~~g~l~~i~~ale~l~L~V~~a~vs~ 120 (164)
.+|++.+++++|.+.|++|...+.+.
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecC
Confidence 47899999999999999997766554
No 205
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=23.07 E-value=1.5e+02 Score=27.09 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=33.0
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYY 123 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~ 123 (164)
.++|.|..|-|+..+|++-|-..++++....|...+.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~~ 38 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGR 38 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCCe
Confidence 4789999999999999999999999999988876544
No 206
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.89 E-value=88 Score=19.93 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 031198 40 VCKLKLKLEAIKREYS 55 (164)
Q Consensus 40 IkeLq~~v~~Le~e~~ 55 (164)
++.+++++++++.|.+
T Consensus 50 ~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 50 IRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 207
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=22.83 E-value=1.7e+02 Score=19.25 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031198 39 YVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 39 YIkeLq~~v~~Le~e~~~~ 57 (164)
.|.+|+.+...|+.|-.-+
T Consensus 22 ~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666554433
No 208
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=22.76 E-value=2.5e+02 Score=24.96 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHhHhhHHhhhcc-C----CCCccccc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT-N----SKSVKKSS-I-IMDSLLYVCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 7 RR~kln~rl~~LRslv-~----~~KmDKaS-I-l~dAI~YIkeLq~~v~~Le~e~~~~~~ 59 (164)
+|.++..++..||+-- . +.+..+.. = ....+..+++|++++++|+++...++.
T Consensus 38 ~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 38 ERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777654 1 22211111 1 456677788899999999887766654
No 209
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.35 E-value=5e+02 Score=23.78 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=36.5
Q ss_pred EEEEcCeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc--cceEEEEEe
Q 031198 79 VEKIGENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN--YYFAMDAIA 130 (164)
Q Consensus 79 V~~~~~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~--~~f~l~~~~ 130 (164)
|+..+++.++=+....+||.+.++...|-+.+++|-+.+++.. ++..+-+..
T Consensus 446 v~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~ 499 (526)
T PRK13581 446 VDAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLS 499 (526)
T ss_pred EEeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEE
Confidence 3333344444456688999999999999999999999888753 344444343
No 210
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.20 E-value=2.8e+02 Score=23.80 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccC--C----------CCCCCCHHHHHHHHHHHHHhccCCCCCC
Q 031198 97 NRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQ--N----------PQQALEARDVAQVILKATEKQAVEWQPS 162 (164)
Q Consensus 97 g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~--~----------~~~~~~~~~ik~al~~ai~~~~~~~~~~ 162 (164)
.-+.++++.+...++++.|-.++...+|.++.....+ . .+.-.+.+++++-+.-| ..-|.+.+|.
T Consensus 18 ~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA-~~rgI~vIPE 94 (329)
T cd06568 18 AEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYA-AERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHH-HHcCCEEEEe
Confidence 4678899999999999999999988899999765321 0 12336889998877666 6666666664
No 211
>PLN02320 seryl-tRNA synthetase
Probab=22.12 E-value=3.4e+02 Score=25.09 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=34.0
Q ss_pred HHHHHhHhhHHhhhcc-C----CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT-N----SKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 7 RR~kln~rl~~LRslv-~----~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~~ 59 (164)
+|.++..++..||+-- . +....+..-....+.-+++|++++.+|+.+....+.
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777755 2 221122234566777888899999998887766554
No 212
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.02 E-value=3e+02 Score=19.48 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=6.5
Q ss_pred cCeEEEEEEecC
Q 031198 83 GENFIVRVRCNK 94 (164)
Q Consensus 83 ~~~~~I~i~c~k 94 (164)
|.|++++...+.
T Consensus 76 G~~~~ve~~~~e 87 (129)
T cd00890 76 GTGVYVEKSLEE 87 (129)
T ss_pred cCCEEEEecHHH
Confidence 555666555443
No 213
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=22.01 E-value=1.4e+02 Score=15.63 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 031198 41 CKLKLKLEAIKREYSN 56 (164)
Q Consensus 41 keLq~~v~~Le~e~~~ 56 (164)
|+|+...+.|+++...
T Consensus 4 k~lEa~~qkLe~e~q~ 19 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQI 19 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5777777777776543
No 214
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=21.88 E-value=1e+02 Score=18.15 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 031198 38 LYVCKLKLKLEAI 50 (164)
Q Consensus 38 ~YIkeLq~~v~~L 50 (164)
.||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5888888888775
No 215
>PLN02551 aspartokinase
Probab=21.56 E-value=2.6e+02 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=29.3
Q ss_pred eEEEEEEecC---CCChHHHHHHHHHcCCCeEEEEEee
Q 031198 85 NFIVRVRCNK---GENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 85 ~~~I~i~c~k---~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
-.+|.|.+.. .+|.+.+|++.|.+.|++|.....|
T Consensus 366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS 403 (521)
T PLN02551 366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 403 (521)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc
Confidence 3788998864 6899999999999999999987543
No 216
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.38 E-value=1.8e+02 Score=17.92 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031198 38 LYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 38 ~YIkeLq~~v~~Le~e~~~~ 57 (164)
.|+.+|+..+..|+.+...+
T Consensus 25 ~~~~~le~~~~~L~~en~~L 44 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQL 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655444
No 217
>PRK09034 aspartate kinase; Reviewed
Probab=21.37 E-value=6e+02 Score=22.77 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=41.1
Q ss_pred EEEEcCeEEEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 031198 79 VEKIGENFIVRVRC---NKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATE 153 (164)
Q Consensus 79 V~~~~~~~~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~ 153 (164)
|....+-.+|.|.. ...+|.+.+++++|.+.+++|.-.+-++. ..+++-+. + -+.....++|++.+.
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~--~------~d~~~av~~LH~~f~ 449 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVK--N------EDAEKAVKAIYNAFF 449 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEc--H------HHHHHHHHHHHHHHh
Confidence 44444456677743 35689999999999999999976553332 22222211 1 234455667777764
No 218
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=21.34 E-value=5.7e+02 Score=22.56 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=35.1
Q ss_pred EecCCCChHHHHHHHHHcCCCeEEEEEeecc----c--ceEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 91 RCNKGENRLVSILEAFEEMGLIVRQATVSCN----Y--YFAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 91 ~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~----~--~f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
.-+++||.|.++++.|-..|++...-..-.. + .|-++..+ ..+...++++|.+.
T Consensus 303 ~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg-------~~~d~~~~~aL~~l 362 (386)
T PRK10622 303 ATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQA-------NLRSAEMQKALKEL 362 (386)
T ss_pred EcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeC-------CCCCHHHHHHHHHH
Confidence 3368999999999999999988877543322 3 34455543 22224466666554
No 219
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=21.33 E-value=1.6e+02 Score=23.77 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=29.2
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
++|..++++|.|-++...+-+.|-++..++--
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~ 36 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQF 36 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehh
Confidence 67888999999999999999999999998754
No 220
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=20.38 E-value=1.5e+02 Score=22.99 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.++..-|++||++++.-|+|....
T Consensus 80 ~~~v~~~Ikel~k~~~~re~E~~e~ 104 (152)
T PF08644_consen 80 LQEVFRQIKELQKRVKQREQERREK 104 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999888765443
Done!