Query 031198
Match_columns 164
No_of_seqs 107 out of 566
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.4E-15 8.2E-20 104.3 6.6 58 2-59 12-71 (82)
2 1nkp_B MAX protein, MYC proto- 99.4 1.9E-13 6.3E-18 94.7 6.8 57 2-58 8-67 (83)
3 1hlo_A Protein (transcription 99.4 2.1E-13 7E-18 93.9 6.4 57 2-58 18-77 (80)
4 1nkp_A C-MYC, MYC proto-oncoge 99.4 3.1E-13 1.1E-17 94.8 6.3 57 2-58 12-72 (88)
5 4h10_B Circadian locomoter out 99.4 1.8E-13 6.1E-18 92.5 4.4 50 2-51 14-65 (71)
6 1an4_A Protein (upstream stimu 99.3 2.1E-13 7.2E-18 90.3 2.2 46 2-47 11-63 (65)
7 4ati_A MITF, microphthalmia-as 99.3 9.2E-13 3.1E-17 97.1 5.8 53 2-54 33-90 (118)
8 4h10_A ARYL hydrocarbon recept 99.3 7.6E-13 2.6E-17 89.9 2.5 43 3-45 16-63 (73)
9 1nlw_A MAD protein, MAX dimeri 99.2 1.3E-11 4.6E-16 85.1 6.9 57 2-58 7-67 (80)
10 1a0a_A BHLH, protein (phosphat 99.2 6.6E-12 2.2E-16 82.9 3.6 46 2-47 8-61 (63)
11 3u5v_A Protein MAX, transcript 99.1 1.9E-11 6.5E-16 83.6 2.4 50 2-51 11-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 98.8 1.9E-09 6.5E-14 72.1 2.8 47 2-48 18-67 (68)
13 4f3l_A Mclock, circadian locom 98.8 4.9E-09 1.7E-13 88.7 5.0 46 2-47 18-65 (361)
14 2ql2_B Neurod1, neurogenic dif 98.7 9.9E-09 3.4E-13 67.0 4.2 47 2-48 8-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 6.9E-08 2.4E-12 82.6 4.5 44 3-46 20-68 (387)
16 2lfh_A DNA-binding protein inh 98.2 2.3E-07 7.8E-12 61.8 0.9 42 4-45 22-67 (68)
17 4ath_A MITF, microphthalmia-as 97.8 2.3E-05 8E-10 54.0 5.0 47 8-54 4-55 (83)
18 4aya_A DNA-binding protein inh 97.3 0.00032 1.1E-08 49.6 5.0 46 4-49 33-82 (97)
19 1zpv_A ACT domain protein; str 97.3 0.0027 9.3E-08 42.6 9.5 71 86-159 6-77 (91)
20 1u8s_A Glycine cleavage system 97.1 0.0016 5.4E-08 50.0 7.3 71 85-159 6-77 (192)
21 2nyi_A Unknown protein; protei 97.0 0.0026 9E-08 49.3 7.9 71 85-159 93-170 (195)
22 1u8s_A Glycine cleavage system 96.9 0.0063 2.2E-07 46.6 9.7 72 85-159 93-173 (192)
23 2nyi_A Unknown protein; protei 96.9 0.0016 5.5E-08 50.5 5.7 71 85-159 5-80 (195)
24 3n0v_A Formyltetrahydrofolate 96.0 0.062 2.1E-06 44.3 10.4 72 85-159 8-82 (286)
25 3o1l_A Formyltetrahydrofolate 95.8 0.057 1.9E-06 45.0 9.7 73 85-159 22-97 (302)
26 3obi_A Formyltetrahydrofolate 95.6 0.069 2.4E-06 44.1 9.4 73 85-159 6-81 (288)
27 3lou_A Formyltetrahydrofolate 95.6 0.087 3E-06 43.6 9.9 76 84-159 9-87 (292)
28 2ko1_A CTR148A, GTP pyrophosph 95.3 0.12 4.3E-06 33.6 8.3 38 86-123 6-43 (88)
29 3p96_A Phosphoserine phosphata 95.0 0.053 1.8E-06 45.8 6.9 73 85-159 12-85 (415)
30 3nrb_A Formyltetrahydrofolate 95.0 0.097 3.3E-06 43.2 8.2 71 85-159 7-80 (287)
31 2jhe_A Transcription regulator 93.1 0.25 8.4E-06 36.0 6.4 37 87-123 2-38 (190)
32 2f1f_A Acetolactate synthase i 89.7 0.85 2.9E-05 34.6 6.4 36 86-121 4-39 (164)
33 2pc6_A Probable acetolactate s 85.7 1.4 4.7E-05 33.5 5.3 36 86-121 5-40 (165)
34 1y7p_A Hypothetical protein AF 83.1 4.5 0.00015 32.2 7.5 58 86-149 5-68 (223)
35 2fgc_A Acetolactate synthase, 82.0 3.7 0.00013 32.0 6.5 36 86-121 30-65 (193)
36 1zme_C Proline utilization tra 70.4 4.9 0.00017 25.1 3.6 23 37-59 43-65 (70)
37 2oqq_A Transcription factor HY 68.3 6.5 0.00022 23.2 3.5 21 38-58 3-23 (42)
38 2l5g_A GPS2 protein, G protein 67.0 9.6 0.00033 21.9 3.9 32 26-57 3-34 (38)
39 2rp4_A Transcription factor P5 66.8 4.6 0.00016 26.7 2.9 37 72-108 7-44 (76)
40 2f06_A Conserved hypothetical 66.7 30 0.001 24.2 8.6 35 87-121 8-42 (144)
41 2xze_Q Charged multivesicular 64.0 2.9 9.8E-05 24.6 1.3 12 9-20 29-40 (40)
42 2er8_A Regulatory protein Leu3 63.4 4.6 0.00016 25.5 2.4 23 36-58 47-69 (72)
43 2wt7_A Proto-oncogene protein 63.0 25 0.00086 22.0 6.1 43 4-58 1-43 (63)
44 1dh3_A Transcription factor CR 61.1 8.8 0.0003 23.7 3.3 40 7-58 3-42 (55)
45 1gd2_E Transcription factor PA 60.5 8.5 0.00029 25.1 3.3 20 38-57 29-48 (70)
46 2f06_A Conserved hypothetical 59.9 42 0.0014 23.5 8.6 32 88-119 75-106 (144)
47 2re1_A Aspartokinase, alpha an 55.8 56 0.0019 23.7 8.8 39 79-117 97-138 (167)
48 2dt9_A Aspartokinase; protein- 53.7 60 0.0021 23.5 8.2 37 83-119 14-51 (167)
49 2akf_A Coronin-1A; coiled coil 53.5 14 0.00047 20.2 2.8 15 39-53 14-28 (32)
50 3he4_B Synzip5; heterodimeric 53.5 18 0.0006 21.1 3.5 19 34-52 6-24 (46)
51 2qmx_A Prephenate dehydratase; 53.4 72 0.0024 25.8 8.5 59 86-151 201-265 (283)
52 2lqj_A Mg2+ transport protein; 51.9 51 0.0017 22.2 6.3 67 86-156 9-79 (94)
53 2re1_A Aspartokinase, alpha an 51.6 23 0.00078 25.9 4.9 37 83-119 23-60 (167)
54 2qmw_A PDT, prephenate dehydra 51.1 85 0.0029 25.2 8.6 61 85-151 186-253 (267)
55 2dtj_A Aspartokinase; protein- 46.5 78 0.0027 23.2 7.2 34 83-116 13-47 (178)
56 1hwt_C Protein (heme activator 44.0 10 0.00035 24.2 1.6 21 37-57 57-77 (81)
57 1g1e_B SIN3A; four-helix bundl 42.4 15 0.0005 24.8 2.3 18 32-49 9-26 (89)
58 2dgc_A Protein (GCN4); basic d 42.2 30 0.001 21.8 3.6 22 37-58 29-50 (63)
59 3coq_A Regulatory protein GAL4 41.1 25 0.00087 22.6 3.3 21 37-57 44-64 (89)
60 1pyi_A Protein (pyrimidine pat 40.7 22 0.00075 23.3 3.0 21 37-57 47-67 (96)
61 1jnm_A Proto-oncogene C-JUN; B 40.5 33 0.0011 21.2 3.6 22 37-58 21-42 (62)
62 1ybx_A Conserved hypothetical 39.8 58 0.002 23.9 5.4 25 33-57 43-67 (143)
63 2rrl_A FLIK, flagellar HOOK-le 39.3 82 0.0028 23.8 6.3 46 76-121 102-153 (169)
64 1e91_A Paired amphipathic heli 39.1 18 0.00061 24.1 2.3 19 31-49 5-23 (85)
65 1t2k_D Cyclic-AMP-dependent tr 36.5 42 0.0014 20.6 3.6 22 37-58 21-42 (61)
66 1phz_A Protein (phenylalanine 36.4 90 0.0031 27.0 6.8 60 86-151 35-98 (429)
67 1xkm_B Distinctin chain B; por 35.7 37 0.0013 17.4 2.6 20 30-49 3-22 (26)
68 1pd3_A Nonstructural protein N 35.3 55 0.0019 20.2 3.8 45 7-54 7-55 (58)
69 3mwb_A Prephenate dehydratase; 34.1 1.9E+02 0.0066 23.6 9.4 59 86-151 202-267 (313)
70 3luy_A Probable chorismate mut 33.0 2E+02 0.0067 23.8 8.2 53 94-151 217-273 (329)
71 2dnr_A Synaptojanin-1; RRM dom 32.8 85 0.0029 21.2 5.0 38 84-122 8-51 (91)
72 2f05_A Paired amphipathic heli 32.5 26 0.00087 24.5 2.3 17 33-49 7-23 (105)
73 3ab4_A Aspartokinase; aspartat 32.2 2.2E+02 0.0076 23.7 9.9 35 83-117 262-297 (421)
74 2czy_A Paired amphipathic heli 31.8 28 0.00096 22.7 2.3 17 33-49 4-20 (77)
75 2dtj_A Aspartokinase; protein- 31.7 1.5E+02 0.0051 21.6 7.9 66 78-153 88-157 (178)
76 2jee_A YIIU; FTSZ, septum, coi 31.6 74 0.0025 21.2 4.4 24 33-56 15-38 (81)
77 1d66_A Protein (GAL4); protein 30.8 13 0.00044 22.6 0.4 16 36-51 50-65 (66)
78 4go7_X Aspartokinase; transfer 30.6 73 0.0025 24.4 4.9 34 83-116 33-67 (200)
79 1kd8_B GABH BLL, GCN4 acid bas 28.0 75 0.0026 18.0 3.3 18 40-57 3-20 (36)
80 1j8b_A YBAB; hypothetical prot 27.7 72 0.0025 22.2 4.0 23 35-57 12-34 (112)
81 2dt9_A Aspartokinase; protein- 27.4 1.7E+02 0.0058 20.9 8.2 67 78-153 88-157 (167)
82 3s1t_A Aspartokinase; ACT doma 26.9 1.9E+02 0.0065 21.3 8.6 34 83-116 14-48 (181)
83 3mtj_A Homoserine dehydrogenas 26.4 64 0.0022 27.8 4.2 32 85-116 359-390 (444)
84 3ggz_E Vacuolar protein-sortin 25.8 28 0.00095 18.9 1.1 13 7-19 16-28 (29)
85 4h62_K Mediator of RNA polymer 25.4 39 0.0013 19.1 1.8 20 7-26 15-34 (40)
86 1kd8_A GABH AIV, GCN4 acid bas 23.9 65 0.0022 18.2 2.5 17 41-57 4-20 (36)
87 3s1t_A Aspartokinase; ACT doma 22.6 2.3E+02 0.0079 20.8 7.9 67 78-153 89-158 (181)
88 3i00_A HIP-I, huntingtin-inter 22.0 96 0.0033 22.0 3.8 28 30-57 32-59 (120)
89 3ra3_B P2F; coiled coil domain 21.7 70 0.0024 16.7 2.2 17 41-57 3-19 (28)
90 1r4g_A RNA polymerase alpha su 20.6 33 0.0011 20.9 0.9 25 15-46 4-31 (53)
91 3f42_A Protein HP0035; helicob 20.3 1.3E+02 0.0044 20.5 4.1 17 41-57 13-29 (99)
92 2cdq_A Aspartokinase; aspartat 20.3 2.9E+02 0.0098 24.1 7.3 42 85-127 341-385 (510)
93 1dip_A Delta-sleep-inducing pe 20.3 1.2E+02 0.0041 20.0 3.6 20 38-57 22-41 (78)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=2.4e-15 Score=104.30 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=53.2
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NS-KSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~-~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~~ 59 (164)
+.||+||.+||++|..||++| +. .|+|||+||.+||+||+.||.+++.|+.+...+..
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999 44 89999999999999999999999999998877653
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.44 E-value=1.9e-13 Score=94.66 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=52.1
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-C--CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-N--SKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~--~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
+.||+||..||+.|..||++| . ..|+||++||.+||+||+.|+++++.|+.+...+.
T Consensus 8 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 8 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999 3 48999999999999999999999999998877664
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=2.1e-13 Score=93.93 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=52.1
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CC--CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NS--KSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~--~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
++||+||..||+.|..||++| .. .|++|++||..||+||+.|++++++|+.+...+.
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999 33 7999999999999999999999999999887664
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=3.1e-13 Score=94.83 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=51.1
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CC---CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NS---KSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~---~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
++||+||.+||+.|..||.+| .+ .|+||++||.+||+||+.|+.+.+.+..+...+.
T Consensus 12 ~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 12 VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999 43 6999999999999999999999999888765543
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=92.52 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-C-CCCccccchhHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-N-SKSVKKSSIIMDSLLYVCKLKLKLEAIK 51 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~-~~KmDKaSIl~dAI~YIkeLq~~v~~Le 51 (164)
+.||+||.+||++|..|+++| . ..|+||+|||..||+||+.||.++.=|+
T Consensus 14 ~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 14 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 368999999999999999999 3 5799999999999999999999876554
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=2.1e-13 Score=90.29 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=41.3
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CCC------CccccchhHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NSK------SVKKSSIIMDSLLYVCKLKLKL 47 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~~------KmDKaSIl~dAI~YIkeLq~~v 47 (164)
+.||+||.+||+.|..|+++| ... |+|||+||.+||+||+.||++.
T Consensus 11 ~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 11 EVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999 433 7899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.35 E-value=9.2e-13 Score=97.07 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=47.9
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CC----CCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NS----KSVKKSSIIMDSLLYVCKLKLKLEAIKREY 54 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~----~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~ 54 (164)
+.||+||.+||++|..|+++| +. .|+|||+||.+||+||+.||++++.|+++.
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999 44 478899999999999999999999998753
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.29 E-value=7.6e-13 Score=89.92 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=39.5
Q ss_pred cHHHHHHHHhHhhHHhhhcc-C----CCCccccchhHHHHHHHHHHHH
Q 031198 3 SRLQRRRALHRKLHILRTLT-N----SKSVKKSSIIMDSLLYVCKLKL 45 (164)
Q Consensus 3 ser~RR~kln~rl~~LRslv-~----~~KmDKaSIl~dAI~YIkeLq~ 45 (164)
.||+||++||+.|..|++|| . .+|+||||||..||+||+.|+-
T Consensus 16 ~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 16 IEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999 3 3899999999999999999973
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.25 E-value=1.3e-11 Score=85.05 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=51.1
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CC---CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NS---KSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~---~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
+.||+||..||+.|..||++| .+ +|+.|++||..|++||+.|+++.+.|+.+...+.
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999 33 7889999999999999999999999998876654
No 10
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.21 E-value=6.6e-12 Score=82.94 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=41.2
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-C-------CCCccccchhHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-N-------SKSVKKSSIIMDSLLYVCKLKLKL 47 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~-------~~KmDKaSIl~dAI~YIkeLq~~v 47 (164)
+.||+||.+||..|..|++++ + -++.+||+||..||+||+.||+++
T Consensus 8 ~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 8 HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp GGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999 2 357779999999999999999865
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.12 E-value=1.9e-11 Score=83.58 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=43.0
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-CCCCcc----ccchhHHHHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-NSKSVK----KSSIIMDSLLYVCKLKLKLEAIK 51 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~~~KmD----KaSIl~dAI~YIkeLq~~v~~Le 51 (164)
+.||+||..+|+.|..||.+| ...+.| |++||..||+||+.||+++++++
T Consensus 11 ~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 11 ALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999 343444 55699999999999999999876
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.80 E-value=1.9e-09 Score=72.11 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhHhhHHhhhcc---CCCCccccchhHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT---NSKSVKKSSIIMDSLLYVCKLKLKLE 48 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv---~~~KmDKaSIl~dAI~YIkeLq~~v~ 48 (164)
+.||+|+..||+.|..||.++ +-+|+.|+.||..||+||..|++.++
T Consensus 18 ~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 18 MRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 358899999999999999998 24899999999999999999998653
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.77 E-value=4.9e-09 Score=88.72 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=41.5
Q ss_pred ccHHHHHHHHhHhhHHhhhcc--CCCCccccchhHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT--NSKSVKKSSIIMDSLLYVCKLKLKL 47 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv--~~~KmDKaSIl~dAI~YIkeLq~~v 47 (164)
++||+||+++|+.|..|++|+ +.+|+||+|||..||.||+.|+..-
T Consensus 18 ~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 18 KSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 468999999999999999999 4689999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.72 E-value=9.9e-09 Score=66.97 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhHhhHHhhhcc-C---CCCccccchhHHHHHHHHHHHHHHH
Q 031198 2 VSRLQRRRALHRKLHILRTLT-N---SKSVKKSSIIMDSLLYVCKLKLKLE 48 (164)
Q Consensus 2 ~ser~RR~kln~rl~~LRslv-~---~~KmDKaSIl~dAI~YIkeLq~~v~ 48 (164)
+.||+|+..||+-|..||.+| . -+|+.|..||.-||+||..|++.++
T Consensus 8 ~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 8 ARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999988 3 3699999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.50 E-value=6.9e-08 Score=82.59 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=40.4
Q ss_pred cHHHHHHHHhHhhHHhhhccC-----CCCccccchhHHHHHHHHHHHHH
Q 031198 3 SRLQRRRALHRKLHILRTLTN-----SKSVKKSSIIMDSLLYVCKLKLK 46 (164)
Q Consensus 3 ser~RR~kln~rl~~LRslv~-----~~KmDKaSIl~dAI~YIkeLq~~ 46 (164)
+||+||.++|+.|..|++|++ .+|+||+|||..||.|||.|+..
T Consensus 20 ~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 20 IEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 588999999999999999993 58999999999999999999854
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.23 E-value=2.3e-07 Score=61.82 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=37.7
Q ss_pred HHHHHHHHhHhhHHhhhcc-CC---CCccccchhHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLT-NS---KSVKKSSIIMDSLLYVCKLKL 45 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv-~~---~KmDKaSIl~dAI~YIkeLq~ 45 (164)
||+|...||+-|..||.+| .+ +|+.|.-||.-||+||..||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 5668899999999999998 32 799999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.83 E-value=2.3e-05 Score=53.97 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=40.7
Q ss_pred HHHHhHhhHHhhhcc-CC----CCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 031198 8 RRALHRKLHILRTLT-NS----KSVKKSSIIMDSLLYVCKLKLKLEAIKREY 54 (164)
Q Consensus 8 R~kln~rl~~LRslv-~~----~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~ 54 (164)
|..+|+++..|..+| +. .|.+|++||.-|++||+.||+..+.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999 33 578999999999999999999888776543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00032 Score=49.59 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=39.4
Q ss_pred HHHHHHHHhHhhHHhhhcc-C---CCCccccchhHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLT-N---SKSVKKSSIIMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv-~---~~KmDKaSIl~dAI~YIkeLq~~v~~ 49 (164)
||.|=..+|+-|..||..| . -+|+.|.-+|.-||+||..|++-+++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3456688999999999998 2 37999999999999999999988654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.28 E-value=0.0027 Score=42.58 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=55.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
+.|.|.|+.+||++.+|...|-+.|.+|.+.+.... +.|.+.... +. ....+.+.+...|.+.-...+..|
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v-~~--~~~~~l~~l~~~L~~~~~~~~~~~ 77 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV-SS--DEKQDFTYLRNEFEAFGQTLNVKI 77 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE-EE--SSCCCHHHHHHHHHHHHHHHTEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE-Ee--CCCCCHHHHHHHHHHHHHHcCCEE
Confidence 779999999999999999999999999999887654 455555444 21 224578999999988766666554
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.07 E-value=0.0016 Score=50.03 Aligned_cols=71 Identities=4% Similarity=0.033 Sum_probs=54.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.|.|+.+||++.+|...|...|++|..+++... +.|.+-..... .. .+.+.++.+|.....+.++.+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~--~~--~~~~~l~~~L~~~~~~~~~~~ 77 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG--SP--SNITRVETTLPLLGQQHDLIT 77 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE--CH--HHHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec--CC--CCHHHHHHHHHHHHHhcCCEE
Confidence 4789999999999999999999999999999998754 66777443321 11 356788888888776655544
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.99 E-value=0.0026 Score=49.27 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=56.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-------cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-------YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAV 157 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-------~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~ 157 (164)
.+.|.|.|+.+||++..|...|-+.|++|.+++..+. +.|.+...... ....+ +.++.++.......+.
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~---~~~~~-~~l~~~l~~~a~~l~~ 168 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF---PFPLY-QEVVTALSRVEEEFGV 168 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE---EGGGH-HHHHHHHHHHHHHHTC
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc---CCCcc-HHHHHHHHHHHHHcCe
Confidence 3889999999999999999999999999999988764 46777765532 12345 8899999988777776
Q ss_pred CC
Q 031198 158 EW 159 (164)
Q Consensus 158 ~~ 159 (164)
+|
T Consensus 169 di 170 (195)
T 2nyi_A 169 DI 170 (195)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.95 E-value=0.0063 Score=46.60 Aligned_cols=72 Identities=8% Similarity=-0.023 Sum_probs=57.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc---------cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhc
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN---------YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQ 155 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~---------~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~ 155 (164)
.+.|.|.|+.++|++..|.+.|-+.|++|..++..+. +.|.+...... ....+.+.++..+.......
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~---~~~~~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV---DSGCNLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE---CTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC---CCCCCHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999877653 35776665422 23568899999999888777
Q ss_pred cCCC
Q 031198 156 AVEW 159 (164)
Q Consensus 156 ~~~~ 159 (164)
+.+|
T Consensus 170 ~~~~ 173 (192)
T 1u8s_A 170 DVQG 173 (192)
T ss_dssp TCEE
T ss_pred CceE
Confidence 7665
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.86 E-value=0.0016 Score=50.49 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCC----HHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALE----ARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~----~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.|.|+.+||++..|...|..+|++|+.+++... +.|.|-...... + .+ .+.++++|..+..+.+..|
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~--~~~~~~~~~l~~~L~~~~~~~~~~~ 80 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--A--KDGKLIQSALESALPGFQISTRRAS 80 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--S--SSSHHHHHHHHHHSTTCEEEEEECC
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--C--ccchhHHHHHHHHHHHHHHhcCCeE
Confidence 3789999999999999999999999999999998754 678774433211 1 23 4556665554443434333
No 24
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=95.96 E-value=0.062 Score=44.31 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=57.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec---ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC---NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~---~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.|.|+.++|+...|...|-+.|.++.+++-.. .+.|.+...... ....+.+.+++++...-.+.+.+|
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~---~~~~~~~~L~~~f~~la~~l~m~~ 82 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ---PDDFDEAGFRAGLAERSEAFGMAF 82 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC---CSSCCHHHHHHHHHHHHGGGTCEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec---CCCCCHHHHHHHHHHHHHHcCCEE
Confidence 478999999999999999999999999999988662 366777665532 225789999999987766666654
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=95.83 E-value=0.057 Score=44.97 Aligned_cols=73 Identities=10% Similarity=0.209 Sum_probs=57.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec---ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC---NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~---~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.+.|+.++|+...|...|-+.|.+|.+++-.. .+.|.|....... +...+.+.+++++...-...+.+|
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~~~~~L~~~l~~la~~l~m~~ 97 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD--TLPFDLDGFREAFTPIAEEFSMDW 97 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG--GSSSCHHHHHHHHHHHHHHHTCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC--CCCCCHHHHHHHHHHHHHHhCCee
Confidence 378999999999999999999999999999988664 3668777655321 224788999999987666666654
No 26
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=95.63 E-value=0.069 Score=44.09 Aligned_cols=73 Identities=11% Similarity=0.163 Sum_probs=57.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec---ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC---NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~---~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.+.|+.++|+...|...|-+.|.++.+++-.. .+.|.+.....- .+...+.+.+++++...-.+.+.+|
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~~~~~~~~L~~~f~~la~~~~m~~ 81 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA--AAKVIPLASLRTGFGVIAAKFTMGW 81 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE--SSCCCCHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc--CCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 478999999999999999999999999999988642 356777665422 1224788999999987766666654
No 27
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=95.58 E-value=0.087 Score=43.59 Aligned_cols=76 Identities=13% Similarity=0.297 Sum_probs=56.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec---ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 84 ENFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC---NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 84 ~~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~---~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
..+.+.+.|+.++|+...|...|-+.|.+|.+++-.. .+.|.+........++...+.+.+++++...-...+.+|
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~m~~ 87 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQW 87 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcCcEE
Confidence 3578999999999999999999999999999988662 366777655422100224788999999987666666654
No 28
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.34 E-value=0.12 Score=33.65 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=34.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYY 123 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~ 123 (164)
+.|+|.++.+||+|.+|...|.+.|++|.+.++...++
T Consensus 6 ~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 6 AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 67899999999999999999999999999988876543
No 29
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.99 E-value=0.053 Score=45.82 Aligned_cols=73 Identities=7% Similarity=0.104 Sum_probs=54.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc-cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN-YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~-~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.|.|+.+||+...|...|-+.|.+|++++-... +.|++-...... +...+.+.++.++...-...+..|
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~ 85 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--ADVADGPALRHDVEAAIRKVGLDV 85 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CCcCCHHHHHHHHHHHHHHcCeEE
Confidence 4789999999999999999999999999999876543 567776654221 112255788888877656656554
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=94.95 E-value=0.097 Score=43.18 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=52.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeec---ccceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhccCCC
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSC---NYYFAMDAIAVPQNPQQALEARDVAQVILKATEKQAVEW 159 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~---~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~~~~ 159 (164)
.+.|.+.|+.++|+...|...|-+.|.+|.+++-.. .+.|.|....... ..+.+.+++++...-.+.+.+|
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~----~~~~~~L~~~f~~la~~~~m~~ 80 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP----VAGVNDFNSAFGKVVEKYNAEW 80 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC----C---CHHHHHHHHHHGGGTCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC----CCCHHHHHHHHHHHHHHcCCee
Confidence 478999999999999999999999999999988642 3667777655321 1344588888876666656554
No 31
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=93.07 E-value=0.25 Score=35.98 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=33.9
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecccc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNYY 123 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~ 123 (164)
.|+|.|..++|+|.+|+..|.+.++++..+++...+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE
Confidence 4889999999999999999999999999999987644
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=89.66 E-value=0.85 Score=34.55 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=32.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
..|.|..+++||.|.+|...|...|+++.+.++...
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t 39 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPT 39 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEEC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeec
Confidence 468899999999999999999999999999888754
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=85.68 E-value=1.4 Score=33.48 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=32.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
..|.|..+++||.|.+|...|...|+++.+.++...
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t 40 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPT 40 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEEC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEec
Confidence 468899999999999999999999999999888754
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=83.09 E-value=4.5 Score=32.24 Aligned_cols=58 Identities=9% Similarity=-0.008 Sum_probs=39.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeeccc------ceEEEEEeccCCCCCCCCHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCNY------YFAMDAIAVPQNPQQALEARDVAQVIL 149 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~~------~f~l~~~~~~~~~~~~~~~~~ik~al~ 149 (164)
+.|.|.+..++|+|.+|+..|-+.+.++.+.+.+... ...+. ... +.. +.+.+-+.|.
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~-IEV----~d~-~Le~LL~kLr 68 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY-FEI----EGG-DFEKILERVK 68 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE-EEE----CSS-CHHHHHHHHH
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE-EEE----CCC-CHHHHHHHHh
Confidence 6789999999999999999999999999999988743 35555 322 222 6666555543
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=81.97 E-value=3.7 Score=31.96 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=32.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
..|.|.-+++||.|.+|...|...|++|.+.++...
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~t 65 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGES 65 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEEC
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeecc
Confidence 568888999999999999999999999999888754
No 36
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=70.42 E-value=4.9 Score=25.05 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNLMA 59 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~~~ 59 (164)
-.||..|+.+++.|+..+..+.+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999998877653
No 37
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.26 E-value=6.5 Score=23.22 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031198 38 LYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 38 ~YIkeLq~~v~~Le~e~~~~~ 58 (164)
.|+-+|+.++++|+.....++
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 488899999998887655554
No 38
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=67.00 E-value=9.6 Score=21.93 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.9
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 26 SVKKSSIIMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 26 KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
.|..+.-|++.=+.|.+|+.+++.|+.|...+
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999876543
No 39
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=66.83 E-value=4.6 Score=26.71 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCcceEEEEE-cCeEEEEEEecCCCChHHHHHHHHHc
Q 031198 72 HVPKEVKVEKI-GENFIVRVRCNKGENRLVSILEAFEE 108 (164)
Q Consensus 72 ~~~~~V~V~~~-~~~~~I~i~c~k~~g~l~~i~~ale~ 108 (164)
..|.+-+|... ++++.+-|.|++++=+|-+|=..+++
T Consensus 7 ~~p~dW~VsRt~dGdYrL~itcpkKe~LLqSIEgmik~ 44 (76)
T 2rp4_A 7 DSAAEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKE 44 (76)
T ss_dssp CSSCCCEEECCTTTBEEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCccceeeeccCCceEEEEEeCcHHHHHHHHHHHHHH
Confidence 46778999988 45699999999998888777666654
No 40
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=66.66 E-value=30 Score=24.23 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=29.7
Q ss_pred EEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 87 IVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 87 ~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
.|.|.-+.+||.+.++...|.+.|++|....+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 46778899999999999999999999988765533
No 41
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=64.03 E-value=2.9 Score=24.58 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=10.6
Q ss_pred HHHhHhhHHhhh
Q 031198 9 RALHRKLHILRT 20 (164)
Q Consensus 9 ~kln~rl~~LRs 20 (164)
+.|+.||.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 469999999997
No 42
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=63.38 E-value=4.6 Score=25.46 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031198 36 SLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 36 AI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
.-.||.+|+++|+.|+..+..+.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34899999999999998776543
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=62.96 E-value=25 Score=21.96 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=29.8
Q ss_pred HHHHHHHHhHhhHHhhhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 4 RLQRRRALHRKLHILRTLTNSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 4 er~RR~kln~rl~~LRslv~~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
|+++|.+..++..+-|+= .---.|+.+|+.++..|+.+...+.
T Consensus 1 Ekr~rrrerNR~AA~rcR------------~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR------------NRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888874 2235788888888888887655443
No 44
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.08 E-value=8.8 Score=23.68 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=28.4
Q ss_pred HHHHHhHhhHHhhhccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLTNSKSVKKSSIIMDSLLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 7 RR~kln~rl~~LRslv~~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~~~~~ 58 (164)
.|..+..|..+-||=. -|- .|+.+|+.+|..|+.+...+.
T Consensus 3 ~rR~~~NResA~rSR~-----RKk-------~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 3 EVRLMKNREAARESRR-----KKK-------EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHH-----HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH-----HHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777742 221 799999999999998876654
No 45
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=60.49 E-value=8.5 Score=25.09 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031198 38 LYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 38 ~YIkeLq~~v~~Le~e~~~~ 57 (164)
.||++|+.+|.+|+.....+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 69999999999998765443
No 46
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=59.89 E-value=42 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.2
Q ss_pred EEEEecCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 88 VRVRCNKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 88 I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
+-+.-+.+||.+.+++++|.+.|++|...-++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~ 106 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSF 106 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence 44566899999999999999999999764433
No 47
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=55.79 E-value=56 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=30.8
Q ss_pred EEEEcCeEEEEEEecC---CCChHHHHHHHHHcCCCeEEEEE
Q 031198 79 VEKIGENFIVRVRCNK---GENRLVSILEAFEEMGLIVRQAT 117 (164)
Q Consensus 79 V~~~~~~~~I~i~c~k---~~g~l~~i~~ale~l~L~V~~a~ 117 (164)
|...++-..|.|.... .||.+.+++++|.+.|++|...+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 3443445778887755 79999999999999999998855
No 48
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=53.73 E-value=60 Score=23.46 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=28.9
Q ss_pred cCeEEEEEEe-cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 83 GENFIVRVRC-NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 83 ~~~~~I~i~c-~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
.+-.+|.|.. +.++|.+.+++++|.+.|++|...+.+
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 4457777765 778999999999999998888765433
No 49
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=53.54 E-value=14 Score=20.20 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 031198 39 YVCKLKLKLEAIKRE 53 (164)
Q Consensus 39 YIkeLq~~v~~Le~e 53 (164)
.+++||+++..||.-
T Consensus 14 ivq~lq~r~drle~t 28 (32)
T 2akf_A 14 IVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777777653
No 50
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=53.46 E-value=18 Score=21.08 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031198 34 MDSLLYVCKLKLKLEAIKR 52 (164)
Q Consensus 34 ~dAI~YIkeLq~~v~~Le~ 52 (164)
.+--+||++|+++-.+|+.
T Consensus 6 kelknyiqeleernaelkn 24 (46)
T 3he4_B 6 KELKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHh
Confidence 3455789998888777765
No 51
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=53.43 E-value=72 Score=25.83 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=38.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc----c--ceEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN----Y--YFAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~----~--~f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
..|-+.-+++||.|.++|..|...|++...-..=.. . .|-++..+ ..+...++++|...
T Consensus 201 tsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg-------~~~d~~v~~aL~~L 265 (283)
T 2qmx_A 201 TSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIG-------HREDQNVHNALENL 265 (283)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEES-------CTTSHHHHHHHHHH
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEec-------CCCcHHHHHHHHHH
Confidence 344445578999999999999999999988554332 3 34455432 23335667666554
No 52
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=51.95 E-value=51 Score=22.22 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=47.1
Q ss_pred EEEEEEecCCC--ChHHHHHHHHHcCCCeEEEEEeecc--cceEEEEEeccCCCCCCCCHHHHHHHHHHHHHhcc
Q 031198 86 FIVRVRCNKGE--NRLVSILEAFEEMGLIVRQATVSCN--YYFAMDAIAVPQNPQQALEARDVAQVILKATEKQA 156 (164)
Q Consensus 86 ~~I~i~c~k~~--g~l~~i~~ale~l~L~V~~a~vs~~--~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~~~~ 156 (164)
+.|+|.|.... .+..-++++|+..++.+.+.....+ +...+.+.... ...+...+-+.+-+.-..+|
T Consensus 9 Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~a----t~~~~~~Le~iv~rLs~ep~ 79 (94)
T 2lqj_A 9 YQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLM----VGHTPAKLERLVAELSLQPG 79 (94)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEE----ESCCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEe----cCCCHHHHHHHHHHHhCCCC
Confidence 78999997764 4566699999999999999885542 33447766543 34567777777766655554
No 53
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=51.60 E-value=23 Score=25.88 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=30.4
Q ss_pred cCeEEEEEEe-cCCCChHHHHHHHHHcCCCeEEEEEee
Q 031198 83 GENFIVRVRC-NKGENRLVSILEAFEEMGLIVRQATVS 119 (164)
Q Consensus 83 ~~~~~I~i~c-~k~~g~l~~i~~ale~l~L~V~~a~vs 119 (164)
.+-..|.|.. +.++|.+.+|++.|...|++|.....+
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 4447888885 888999999999999999988775433
No 54
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=51.14 E-value=85 Score=25.19 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=40.3
Q ss_pred eEEEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEeecc----cceEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 85 NFIVRVRC---NKGENRLVSILEAFEEMGLIVRQATVSCN----YYFAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 85 ~~~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~vs~~----~~f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
...|-+.. +++||.|.++|+.|...|++...-..-.. ..|.+-+-. + ..+...++++|...
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~-----e-~~~d~~v~~aL~~L 253 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA-----D-SAITTDIKKVIAIL 253 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE-----S-CCSCHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE-----e-cCCcHHHHHHHHHH
Confidence 34555666 78899999999999999999988554322 334443322 2 23446677776554
No 55
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=46.45 E-value=78 Score=23.22 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=27.0
Q ss_pred cCeEEEEEE-ecCCCChHHHHHHHHHcCCCeEEEE
Q 031198 83 GENFIVRVR-CNKGENRLVSILEAFEEMGLIVRQA 116 (164)
Q Consensus 83 ~~~~~I~i~-c~k~~g~l~~i~~ale~l~L~V~~a 116 (164)
.+-..|.|. -+.++|.+.+|++.|.+.|++|...
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i 47 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMV 47 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEE
Confidence 344778884 4888999999999999999666554
No 56
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=43.98 E-value=10 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~ 57 (164)
-.||..|+.+|..||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999866544
No 57
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=42.37 E-value=15 Score=24.81 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 031198 32 IIMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 32 Il~dAI~YIkeLq~~v~~ 49 (164)
=+.||+.||++++.+-+.
T Consensus 9 ~~~~A~~YvnkVK~rF~~ 26 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQG 26 (89)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 367999999999998654
No 58
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.17 E-value=30 Score=21.77 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~~ 58 (164)
-.|+.+|+.+|+.|+.+...+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999998887766554
No 59
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=41.07 E-value=25 Score=22.56 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~ 57 (164)
-.|+..|+++++.||..+..+
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999877655
No 60
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=40.69 E-value=22 Score=23.33 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~ 57 (164)
-.|+..|+++++.||..+..+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999877654
No 61
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.52 E-value=33 Score=21.24 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~~ 58 (164)
-.|+.+|+.++..|+.+...+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888765554
No 62
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=39.80 E-value=58 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.+...-.+++|++.++++++++..
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~ 67 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEK 67 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777888888888888877654
No 63
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=39.25 E-value=82 Score=23.77 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=38.2
Q ss_pred ceEEEEEcCeEEEEEEecCC------CChHHHHHHHHHcCCCeEEEEEeecc
Q 031198 76 EVKVEKIGENFIVRVRCNKG------ENRLVSILEAFEEMGLIVRQATVSCN 121 (164)
Q Consensus 76 ~V~V~~~~~~~~I~i~c~k~------~g~l~~i~~ale~l~L~V~~a~vs~~ 121 (164)
+|++.+.++.+.+.+..++. ++-+-.+-++|.+-||.+.+++|+.-
T Consensus 102 ~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 102 HISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 56666767789999999886 45678889999999999999999853
No 64
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=39.08 E-value=18 Score=24.13 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 031198 31 SIIMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 31 SIl~dAI~YIkeLq~~v~~ 49 (164)
.-+.||+.||++++.+-+.
T Consensus 5 ~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHHHHHHhc
Confidence 3468999999999998655
No 65
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.51 E-value=42 Score=20.64 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031198 37 LLYVCKLKLKLEAIKREYSNLM 58 (164)
Q Consensus 37 I~YIkeLq~~v~~Le~e~~~~~ 58 (164)
-.|+.+|+.++..|+.+...+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888887765554
No 66
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=36.41 E-value=90 Score=27.02 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=39.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHcCCCeEEEEEeecc----cceEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 86 FIVRVRCNKGENRLVSILEAFEEMGLIVRQATVSCN----YYFAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 86 ~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a~vs~~----~~f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
..|-+..++++|.|.++|+.|...|+++.+-..-.. ..|.+-+-+ + ..+...++++|...
T Consensus 35 TSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~-----e-h~~d~~v~~AL~eL 98 (429)
T 1phz_A 35 ISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL-----D-KRTKPVLGSIIKSL 98 (429)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB-----C-GGGHHHHHHHHHHH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEE-----e-eCCCHHHHHHHHHH
Confidence 455566688899999999999999999887543322 334443322 2 33445566666554
No 67
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=35.72 E-value=37 Score=17.44 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.2
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 031198 30 SSIIMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 30 aSIl~dAI~YIkeLq~~v~~ 49 (164)
.|-|-+|-.|+.+|..+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 35567888999998888653
No 68
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=35.32 E-value=55 Score=20.22 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=30.1
Q ss_pred HHHHHhHhhHHhhhcc----CCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 031198 7 RRRALHRKLHILRTLT----NSKSVKKSSIIMDSLLYVCKLKLKLEAIKREY 54 (164)
Q Consensus 7 RR~kln~rl~~LRslv----~~~KmDKaSIl~dAI~YIkeLq~~v~~Le~e~ 54 (164)
=|++|.++|...|-++ +.=|+.--| -+-|.|++-||-- -+.++|+
T Consensus 7 wReqL~qKFEeIRwlIeE~Rh~Lk~Tens--feQItfmqalQLl-leveqei 55 (58)
T 1pd3_A 7 WREQLGQKFEEIRWLIEEVRHRLKITENS--FEQITFMQALQLL-LEVEQEI 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCTTS--HHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHH-HHHHHHH
Confidence 4899999999999998 223333333 4678888888863 3344443
No 69
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=34.07 E-value=1.9e+02 Score=23.62 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=39.0
Q ss_pred EEEEEEec-CCCChHHHHHHHHHcCCCeEEEEEeecc----cc--eEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 86 FIVRVRCN-KGENRLVSILEAFEEMGLIVRQATVSCN----YY--FAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 86 ~~I~i~c~-k~~g~l~~i~~ale~l~L~V~~a~vs~~----~~--f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
..|-+.-+ ++||.|.++|..|...|++...-..-.. .. |-++..+ ..+...++++|...
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg-------~~~d~~v~~aL~~L 267 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADG-------HATDSRVADALAGL 267 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEES-------CTTSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeC-------CCCcHHHHHHHHHH
Confidence 44555665 7899999999999999999887554322 33 5555432 23445577766554
No 70
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=33.01 E-value=2e+02 Score=23.75 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEEeecc----cceEEEEEeccCCCCCCCCHHHHHHHHHHH
Q 031198 94 KGENRLVSILEAFEEMGLIVRQATVSCN----YYFAMDAIAVPQNPQQALEARDVAQVILKA 151 (164)
Q Consensus 94 k~~g~l~~i~~ale~l~L~V~~a~vs~~----~~f~l~~~~~~~~~~~~~~~~~ik~al~~a 151 (164)
.+||.|.++|..|...|++...-..-.. ..|.+.+-. +...+...++++|...
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~-----eg~~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL-----DAAPWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE-----SSCTTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE-----eCCcCCHHHHHHHHHH
Confidence 5799999999999999999877543322 334443322 2234446677777664
No 71
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.78 E-value=85 Score=21.21 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=26.9
Q ss_pred CeEEEEEEec------CCCChHHHHHHHHHcCCCeEEEEEeeccc
Q 031198 84 ENFIVRVRCN------KGENRLVSILEAFEEMGLIVRQATVSCNY 122 (164)
Q Consensus 84 ~~~~I~i~c~------k~~g~l~~i~~ale~l~L~V~~a~vs~~~ 122 (164)
..++|.+.-. ..+.+...+++.|..+| +|+.+++-.-.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 3466666321 13457889999999999 99999977533
No 72
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=32.53 E-value=26 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~ 49 (164)
+.||+.||++++.+-+.
T Consensus 7 ~~dA~~YvnkVK~rF~d 23 (105)
T 2f05_A 7 FNNAISYVNKIKTRFLD 23 (105)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 57999999999999654
No 73
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=32.19 E-value=2.2e+02 Score=23.75 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=29.7
Q ss_pred cCeEEEEEE-ecCCCChHHHHHHHHHcCCCeEEEEE
Q 031198 83 GENFIVRVR-CNKGENRLVSILEAFEEMGLIVRQAT 117 (164)
Q Consensus 83 ~~~~~I~i~-c~k~~g~l~~i~~ale~l~L~V~~a~ 117 (164)
.+-+.|.|. .+.++|.+.+|++.|.+.+++|....
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~ 297 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVL 297 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEE
Confidence 455788888 58889999999999999999888754
No 74
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=31.83 E-value=28 Score=22.66 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEA 49 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~ 49 (164)
+.||+.|++..+.+-+.
T Consensus 4 ~~dA~~yl~~VK~~F~~ 20 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGS 20 (77)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 57999999999998764
No 75
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=31.65 E-value=1.5e+02 Score=21.60 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=43.7
Q ss_pred EEEEEcCeEEEEEEec---CCCChHHHHHHHHHcCCCeEEEEEeeccc-ceEEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 031198 78 KVEKIGENFIVRVRCN---KGENRLVSILEAFEEMGLIVRQATVSCNY-YFAMDAIAVPQNPQQALEARDVAQVILKATE 153 (164)
Q Consensus 78 ~V~~~~~~~~I~i~c~---k~~g~l~~i~~ale~l~L~V~~a~vs~~~-~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~ 153 (164)
.+...++-..|.|... ..||.+.+++++|.+-|++|.-.+.|... +|.++ .-+.+...++|++++.
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV~----------~~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIR----------EDDLDAAARALHEQFQ 157 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEE----------GGGHHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEe----------HHHHHHHHHHHHHHHc
Confidence 3455455577888774 56899999999999999999875533211 22221 1345666677887775
No 76
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.63 E-value=74 Score=21.22 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 33 IMDSLLYVCKLKLKLEAIKREYSN 56 (164)
Q Consensus 33 l~dAI~YIkeLq~~v~~Le~e~~~ 56 (164)
|..||+-|.-||..+++|+.+...
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999888888888888876544
No 77
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=30.78 E-value=13 Score=22.61 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 031198 36 SLLYVCKLKLKLEAIK 51 (164)
Q Consensus 36 AI~YIkeLq~~v~~Le 51 (164)
.-.||..|+++++.||
T Consensus 50 ~~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 50 TRAHLTEVESRLERLE 65 (66)
T ss_dssp CHHHHHHHHHHHTTC-
T ss_pred cHHHHHHHHHHHHHHc
Confidence 3579999999998876
No 78
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=30.56 E-value=73 Score=24.38 Aligned_cols=34 Identities=6% Similarity=0.019 Sum_probs=27.9
Q ss_pred cCeEEEEEE-ecCCCChHHHHHHHHHcCCCeEEEE
Q 031198 83 GENFIVRVR-CNKGENRLVSILEAFEEMGLIVRQA 116 (164)
Q Consensus 83 ~~~~~I~i~-c~k~~g~l~~i~~ale~l~L~V~~a 116 (164)
.+.+.|.|. .+..||.+.+|+++|.+.+++|--.
T Consensus 33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI 67 (200)
T 4go7_X 33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMV 67 (200)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCE
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEE
Confidence 455777775 5889999999999999998887664
No 79
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.99 E-value=75 Score=17.95 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031198 40 VCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 40 IkeLq~~v~~Le~e~~~~ 57 (164)
+++|+.+|++|-.+...+
T Consensus 3 MnQLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 466777777766554443
No 80
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=27.73 E-value=72 Score=22.21 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031198 35 DSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 35 dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
+-..-.+++|++.++++++++..
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~ 34 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQL 34 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 44677788899998888877543
No 81
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=27.41 E-value=1.7e+02 Score=20.91 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=41.4
Q ss_pred EEEEEcCeEEEEEEecC---CCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 031198 78 KVEKIGENFIVRVRCNK---GENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATE 153 (164)
Q Consensus 78 ~V~~~~~~~~I~i~c~k---~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~ 153 (164)
.|...++-..|.|.... .||.+.+++++|.+-|++|...+.|.. .+-....+ -+.+..-++|++++.
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~---~is~vv~~------~d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEV---RISVIIPA------EYAEAALRAVHQAFE 157 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSS---EEEEEEEG------GGHHHHHHHHHHHTC
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCC---EEEEEEeH------HHHHHHHHHHHHHHc
Confidence 44444445777777644 799999999999999999966542211 22222211 234555566666653
No 82
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=26.87 E-value=1.9e+02 Score=21.27 Aligned_cols=34 Identities=6% Similarity=0.014 Sum_probs=27.3
Q ss_pred cCeEEEEEEe-cCCCChHHHHHHHHHcCCCeEEEE
Q 031198 83 GENFIVRVRC-NKGENRLVSILEAFEEMGLIVRQA 116 (164)
Q Consensus 83 ~~~~~I~i~c-~k~~g~l~~i~~ale~l~L~V~~a 116 (164)
.+-.+|.|.. +..+|.+.+|++.|...+++|.-.
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I 48 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMV 48 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 3446677754 778999999999999999888764
No 83
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=26.44 E-value=64 Score=27.80 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=28.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHcCCCeEEEE
Q 031198 85 NFIVRVRCNKGENRLVSILEAFEEMGLIVRQA 116 (164)
Q Consensus 85 ~~~I~i~c~k~~g~l~~i~~ale~l~L~V~~a 116 (164)
.|++++.+..+||.|.+|-..|-+.++++.+.
T Consensus 359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~ 390 (444)
T 3mtj_A 359 AYYLRLRAFDRPGVLADITRILADSSISIDAM 390 (444)
T ss_dssp EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEE
T ss_pred eeEEEEEecCcccHHHHHHHHHHhcCCceeEE
Confidence 48999999999999999999999999998774
No 84
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=25.81 E-value=28 Score=18.89 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=11.1
Q ss_pred HHHHHhHhhHHhh
Q 031198 7 RRRALHRKLHILR 19 (164)
Q Consensus 7 RR~kln~rl~~LR 19 (164)
.-.||-+||.+||
T Consensus 16 kEDkLAqRLRALR 28 (29)
T 3ggz_E 16 KEDKLAQRLRALR 28 (29)
T ss_pred hhHHHHHHHHHHc
Confidence 5578999999998
No 85
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=25.38 E-value=39 Score=19.05 Aligned_cols=20 Identities=10% Similarity=0.343 Sum_probs=15.7
Q ss_pred HHHHHhHhhHHhhhccCCCC
Q 031198 7 RRRALHRKLHILRTLTNSKS 26 (164)
Q Consensus 7 RR~kln~rl~~LRslv~~~K 26 (164)
--+||.++|..|.+++..+|
T Consensus 15 dtekmeeqldllsaildpsk 34 (40)
T 4h62_K 15 DTEKMEEQLDLLSAILDPSK 34 (40)
T ss_pred cHHHHHHHHHHHHHHcCccc
Confidence 34899999999999984443
No 86
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.94 E-value=65 Score=18.22 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031198 41 CKLKLKLEAIKREYSNL 57 (164)
Q Consensus 41 keLq~~v~~Le~e~~~~ 57 (164)
++|+.+|++|..+...+
T Consensus 4 nQLE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHH
Confidence 56666666665554443
No 87
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=22.62 E-value=2.3e+02 Score=20.77 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=42.9
Q ss_pred EEEEEcCeEEEEEEec---CCCChHHHHHHHHHcCCCeEEEEEeecccceEEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 031198 78 KVEKIGENFIVRVRCN---KGENRLVSILEAFEEMGLIVRQATVSCNYYFAMDAIAVPQNPQQALEARDVAQVILKATE 153 (164)
Q Consensus 78 ~V~~~~~~~~I~i~c~---k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~~~~~~~~~~~~~~~~~ik~al~~ai~ 153 (164)
+|...++-..|.|... ..||++.+++++|.+-+++|...+.| ...+-....+ -+.+..-++|++++.
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS---ei~Is~vV~~------~d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS---EIRISVLCRD------TELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE---TTEEEEEEEG------GGHHHHHHHHHHHHT
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC---CCEEEEEEeH------HHHHHHHHHHHHHHc
Confidence 3444444466777553 67999999999999999998887733 2222222211 344556667777764
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.03 E-value=96 Score=22.00 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031198 30 SSIIMDSLLYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 30 aSIl~dAI~YIkeLq~~v~~Le~e~~~~ 57 (164)
-+|...|=.||-+|+.+|..|++++...
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999887543
No 89
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.74 E-value=70 Score=16.68 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031198 41 CKLKLKLEAIKREYSNL 57 (164)
Q Consensus 41 keLq~~v~~Le~e~~~~ 57 (164)
+.|+++-..|++|++.+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 34555555555554433
No 90
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=20.59 E-value=33 Score=20.92 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=15.4
Q ss_pred hHHhhhcc---CCCCccccchhHHHHHHHHHHHHH
Q 031198 15 LHILRTLT---NSKSVKKSSIIMDSLLYVCKLKLK 46 (164)
Q Consensus 15 l~~LRslv---~~~KmDKaSIl~dAI~YIkeLq~~ 46 (164)
+..|+.++ +++...|+| ||++|...
T Consensus 4 m~SL~~vI~nS~LS~~~K~s-------Yi~~L~~C 31 (53)
T 1r4g_A 4 MHSLRLVIESSPLSRAEKAA-------YVKSLSKC 31 (53)
T ss_dssp HHHHHHHHTTSCCCSHHHHH-------HHHHHHTC
T ss_pred hhhHhhhhcCCcccHHHHHH-------HHHHHHHc
Confidence 34556666 345556654 99999753
No 91
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=20.34 E-value=1.3e+02 Score=20.48 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031198 41 CKLKLKLEAIKREYSNL 57 (164)
Q Consensus 41 keLq~~v~~Le~e~~~~ 57 (164)
+++|++.++++++++..
T Consensus 13 q~mQ~~m~~~QeeL~~~ 29 (99)
T 3f42_A 13 DGMKKEFSQLEEKNKDT 29 (99)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88999999999887653
No 92
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=20.31 E-value=2.9e+02 Score=24.05 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=32.2
Q ss_pred eEEEEEEe---cCCCChHHHHHHHHHcCCCeEEEEEeecccceEEE
Q 031198 85 NFIVRVRC---NKGENRLVSILEAFEEMGLIVRQATVSCNYYFAMD 127 (164)
Q Consensus 85 ~~~I~i~c---~k~~g~l~~i~~ale~l~L~V~~a~vs~~~~f~l~ 127 (164)
-.+|.|.. ...+|.+.+|++.|...+++|.....| ..++++-
T Consensus 341 ~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss-e~sis~~ 385 (510)
T 2cdq_A 341 VTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS-EVSISLT 385 (510)
T ss_dssp EEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE-TTEEEEE
T ss_pred eEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC-CCeEEEE
Confidence 37799986 457899999999999999999987543 3444433
No 93
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.30 E-value=1.2e+02 Score=19.95 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031198 38 LYVCKLKLKLEAIKREYSNL 57 (164)
Q Consensus 38 ~YIkeLq~~v~~Le~e~~~~ 57 (164)
+.|++|.+++..||.|-.-+
T Consensus 22 e~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777665444
Done!