BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031200
MSFACFCSYRTNYFIMITVILGLGFLRRPVAIIAALLTALSIAFLNDSFAGTFNEKVTRT
VRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLT
VLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL

High Scoring Gene Products

Symbol, full name Information P value
PRA1.A1
AT5G02040
protein from Arabidopsis thaliana 7.5e-57
PRA1.A3
AT3G11397
protein from Arabidopsis thaliana 7.2e-52
PRA1.A2
AT5G05987
protein from Arabidopsis thaliana 1.2e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031200
        (164 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2185198 - symbol:PRA1.A1 "AT5G02040" species:3...   585  7.5e-57   1
TAIR|locus:1006230201 - symbol:PRA1.A3 "AT3G11397" specie...   538  7.2e-52   1
TAIR|locus:1005716110 - symbol:PRA1.A2 "AT5G05987" specie...   536  1.2e-51   1


>TAIR|locus:2185198 [details] [associations]
            symbol:PRA1.A1 "AT5G02040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005783 "endoplasmic reticulum"
            evidence=IDA] [GO:0016192 "vesicle-mediated transport"
            evidence=IDA] [GO:0006869 "lipid transport" evidence=RCA]
            [GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA]
            [GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
            [GO:0010351 "lithium ion transport" evidence=RCA] [GO:0016558
            "protein import into peroxisome matrix" evidence=RCA] Pfam:PF03208
            InterPro:IPR004895 GO:GO:0005783 GO:GO:0016021 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0016192 GO:GO:0005789 EMBL:AL162508
            EMBL:AY045975 EMBL:AY054290 EMBL:AY079325 EMBL:AY085842
            IPI:IPI00516570 PIR:T48225 RefSeq:NP_195824.1 RefSeq:NP_850753.1
            UniGene:At.20027 IntAct:Q9LZM7 PRIDE:Q9LZM7
            EnsemblPlants:AT5G02040.1 EnsemblPlants:AT5G02040.2 GeneID:831904
            KEGG:ath:AT5G02040 TAIR:At5g02040 eggNOG:NOG280196
            HOGENOM:HOG000241475 InParanoid:Q9LZM7 OMA:RPVPEFF PhylomeDB:Q9LZM7
            ProtClustDB:CLSN2687304 Genevestigator:Q9LZM7 Uniprot:Q9LZM7
        Length = 209

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 113/156 (72%), Positives = 124/156 (79%)

Query:     9 YRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHL 68
             YRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP L
Sbjct:    54 YRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQL 113

Query:    69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
             AAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL + 
Sbjct:   114 AAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIA 173

Query:   129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
              LATILHAS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct:   174 HLATILHASLRTPNLKARFNTFREEFRAVWRNYSEI 209


>TAIR|locus:1006230201 [details] [associations]
            symbol:PRA1.A3 "AT3G11397" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0016020 "membrane" evidence=ISS]
            [GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0016192
            "vesicle-mediated transport" evidence=IDA] Pfam:PF03208
            InterPro:IPR004895 GO:GO:0005783 GO:GO:0016021 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0016192 GO:GO:0010008 EMBL:AC008153
            ProtClustDB:CLSN2687304 EMBL:AF462798 EMBL:AY113021 EMBL:AK227026
            IPI:IPI00539073 RefSeq:NP_974282.1 UniGene:At.23273 IntAct:Q8W115
            PaxDb:Q8W115 PRIDE:Q8W115 EnsemblPlants:AT3G11397.1 GeneID:2745881
            KEGG:ath:AT3G11397 TAIR:At3g11397 eggNOG:euNOG05769
            HOGENOM:HOG000064693 InParanoid:Q8W115 PhylomeDB:Q8W115
            Genevestigator:Q8W115 Uniprot:Q8W115
        Length = 209

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 100/156 (64%), Positives = 116/156 (74%)

Query:     9 YRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHL 68
             YRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHL
Sbjct:    54 YRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHL 113

Query:    69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
             AAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+AL   
Sbjct:   114 AAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTA 173

Query:   129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
             LL  +LHAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct:   174 LLMILLHASLRTPNLKARLNTFREEFRAVWRNYSEL 209


>TAIR|locus:1005716110 [details] [associations]
            symbol:PRA1.A2 "AT5G05987" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005783 "endoplasmic reticulum"
            evidence=IDA] [GO:0016192 "vesicle-mediated transport"
            evidence=IDA] Pfam:PF03208 InterPro:IPR004895 GO:GO:0005783
            GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016192
            GO:GO:0010008 EMBL:AB017060 HOGENOM:HOG000241475
            ProtClustDB:CLSN2687304 EMBL:AK118943 EMBL:BT005581 IPI:IPI00534339
            RefSeq:NP_850778.1 UniGene:At.47038 UniGene:At.9450 PRIDE:Q8GWC3
            EnsemblPlants:AT5G05987.1 GeneID:830485 KEGG:ath:AT5G05987
            TAIR:At5g05987 eggNOG:NOG272388 InParanoid:Q8GWC3 OMA:NDSFAAS
            PhylomeDB:Q8GWC3 Genevestigator:Q8GWC3 Uniprot:Q8GWC3
        Length = 209

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 96/156 (61%), Positives = 116/156 (74%)

Query:     9 YRTNYFIMITVILGLGFLRRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHL 68
             YRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+
Sbjct:    54 YRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHM 113

Query:    69 AAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVG 128
             AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+AL   
Sbjct:   114 AAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTS 173

Query:   129 LLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 164
             L   I+HAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct:   174 LAVIIVHASIRTPNLKARLNTFREEFRAVWRNYSEL 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.143   0.473    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       151   0.00097  104 3  11 21  0.46    30
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.63u 0.12s 14.75t   Elapsed:  00:00:01
  Total cpu time:  14.63u 0.12s 14.75t   Elapsed:  00:00:01
  Start:  Fri May 10 15:31:44 2013   End:  Fri May 10 15:31:45 2013

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